text stringlengths 89 104k | code_tokens list | avg_line_len float64 7.91 980 | score float64 0 630 |
|---|---|---|---|
def update_import_errors(session, dagbag):
"""
For the DAGs in the given DagBag, record any associated import errors and clears
errors for files that no longer have them. These are usually displayed through the
Airflow UI so that users know that there are issues parsing DAGs.
:p... | [
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def lsb_release(self,
loglevel=logging.DEBUG):
"""Get distro information from lsb_release.
"""
# v the space is intentional, to avoid polluting bash history.
shutit = self.shutit
d = {}
self.send(ShutItSendSpec(self,
send=' command lsb_release -a',
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def run(self, func, *func_args, **func__kwargs):
"""
Specify the function to run at the scheduled times
:param func: a callable
:param func_args: the args to the callable
:param func__kwargs: the kwargs to the callable
:return:
"""
self._func = func
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def get(self, request, bot_id, id, format=None):
"""
Get list of Messenger recipients of a hook
---
serializer: MessengerRecipientSerializer
responseMessages:
- code: 401
message: Not authenticated
"""
return super(MessengerRecipientList,... | [
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def ConvCnstrMODOptions(opt=None, method='fista'):
"""A wrapper function that dynamically defines a class derived from
the Options class associated with one of the implementations of
the Convolutional Constrained MOD problem, and returns an object
instantiated with the provided parameters. The wrapper i... | [
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def search(self, resource, resource_class, search_filter=None, dmql_query=None, limit=9999999, offset=0,
optional_parameters=None, auto_offset=True, query_type='DMQL2', standard_names=0,
response_format='COMPACT-DECODED'):
"""
Preform a search on the RETS board
:par... | [
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def check_in_out_dates(self):
"""
When date_order is less then check-in date or
Checkout date should be greater than the check-in date.
"""
if self.checkout and self.checkin:
if self.checkin < self.date_order:
raise ValidationError(_('Check-in date sho... | [
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def capture_usb_device(self, id_p, capture_filename):
"""Requests a capture of the given host USB device.
When the request is completed, the VM process will
get a :py:func:`IInternalSessionControl.on_usb_device_attach`
notification.
in id_p of type str
in capture_filen... | [
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def invert_dict(dict_, unique_vals=True):
r"""
Swaps the keys and values in a dictionary.
Args:
dict_ (dict): dictionary to invert
unique_vals (bool): if False, inverted keys are returned in a set.
The default is True.
Returns:
dict: inverted
Notes:
The... | [
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def clear(self) -> None:
"""
Clears out the tracked metrics, but keeps the patience and should_decrease settings.
"""
self._best_so_far = None
self._epochs_with_no_improvement = 0
self._is_best_so_far = True
self._epoch_number = 0
self.best_epoch = None | [
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def parse(chord):
""" Parse a string to get chord component
:param str chord: str expression of a chord
:rtype: (str, pychord.Quality, str, str)
:return: (root, quality, appended, on)
"""
if len(chord) > 1 and chord[1] in ("b", "#"):
root = chord[:2]
rest = chord[2:]
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def set_fixed_capabils(self, capabils):
"""set keys of capabils into fields of object
:capabils: dict
"""
self.ess = capabils['ess']
self.ibss = capabils['ibss']
self.priv = capabils['priv']
self.short_preamble = capabils['short_preamble']
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def checkOutputPath(self, output_path):
"""
Create or clean up output path
"""
if not output_path:
# output_path = self.output_path_DEFAULT
output_path = os.path.join(self.output_path_DEFAULT,
slugify(unicode(self.title)))
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def get_response(self):
"""
Get a response from the chatbot and display it.
"""
user_input = self.usr_input.get()
self.usr_input.delete(0, tk.END)
response = self.chatbot.get_response(user_input)
self.conversation['state'] = 'normal'
self.conversation.in... | [
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def voigt_symmetrized(self):
"""
Returns a "voigt"-symmetrized tensor, i. e. a voigt-notation
tensor such that it is invariant wrt permutation of indices
"""
if not (self.rank % 2 == 0 and self.rank >= 2):
raise ValueError("V-symmetrization requires rank even and >= 2... | [
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def import_from_path(path):
""" Import and return the object at `path` if it exists.
Raises an :exc:`ImportError` if the object is not found.
"""
if path is None:
return
obj = locate(path)
if obj is None:
raise ImportError(
"`{}` could not be imported".format(path)
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def action_update_library_location(_location):
"""
Sets the folder that contains models for the local library
@todo: add options to move things over etc..
note: this is called from 'manager'
"""
# if not(os.path.exists(_location)):
# os.mkdir(_location)
# printDebug("Creating... | [
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def execute_catch(c, sql, vars=None):
"""Run a query, but ignore any errors. For error recovery paths where the error handler should not raise another."""
try:
c.execute(sql, vars)
except Exception as err:
cmd = sql.split(' ', 1)[0]
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def _substitute_file_uuids_throughout_template(self, template, file_dependencies):
"""Anywhere in "template" that refers to a data object but does not
give a specific UUID, if a matching file can be found in "file_dependencies",
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def build_config(self, config):
"""Set config defaults"""
for sec in 'LiSE', 'ELiDE':
config.adddefaultsection(sec)
config.setdefaults(
'LiSE',
{
'world': 'sqlite:///LiSEworld.db',
'language': 'eng',
'logfile': '... | [
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def quantize(
self,
input=None,
qout=False,
cutoff=0,
retrain=False,
epoch=None,
lr=None,
thread=None,
verbose=None,
dsub=2,
qnorm=False
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"""
Quantize the model reducing the size of the model and
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def read_profile(name):
"""Get a named profile from the CONFIG_FILE.
Args:
name
The name of the profile to load.
Returns:
A dictionary with the profile's ``repo`` and ``token`` values.
"""
config = configparser.ConfigParser()
config.read(CONFIG_FILE)
profile =... | [
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def truncate_to_string(num, precision=0):
"""Deprecated, todo: remove references from subclasses"""
if precision > 0:
parts = ('{0:.%df}' % precision).format(Decimal(num)).split('.')
decimal_digits = parts[1][:precision].rstrip('0')
decimal_digits = decimal_digits if ... | [
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def generate(self, x, **kwargs):
"""
Return a tensor that constructs adversarial examples for the given
input. Generate uses tf.py_func in order to operate over tensors.
:param x: A tensor with the inputs.
:param kwargs: See `parse_params`
"""
assert self.sess is not None, \
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def _get_snapshot(name, suffix, blade):
'''
Return name of Snapshot
or None
'''
try:
filt = 'source=\'{}\' and suffix=\'{}\''.format(name, suffix)
res = blade.file_system_snapshots.list_file_system_snapshots(filter=filt)
return res.items[0]
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def find(self, asset_id, query=None, **kwargs):
"""
Gets a single asset by ID.
"""
if query is None:
query = {}
normalize_select(query)
return super(AssetsProxy, self).find(asset_id, query=query, **kwargs) | [
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def f_set_single(self, name, item):
"""Adds a single data item to the pickle result.
Note that it is NOT checked if the item can be pickled!
"""
if self.v_stored:
self._logger.debug('You are changing an already stored result. If '
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def wrap_tuple_streams(unwrapped, kdims, streams):
"""
Fills in tuple keys with dimensioned stream values as appropriate.
"""
param_groups = [(s.contents.keys(), s) for s in streams]
pairs = [(name,s) for (group, s) in param_groups for name in group]
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def _replace_deferred(self, arg, context):
"""This replaces all deferred nodes (UnboundVariables and _DeferredLayers).
If arg is a sequence or a dict, then it's deferred values are also replaced.
Args:
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def get_predictions(genes):
"""Get sift predictions from genes."""
data = {
'sift_predictions': [],
'polyphen_predictions': [],
'region_annotations': [],
'functional_annotations': []
}
for gene_obj in genes:
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def new_crew_member(self, program, role, fullname, givenname, surname):
"""Callback run for each new crew member entry. 'fullname' is a
derived full-name, based on the presence of 'givenname' and/or
'surname'.
"""
if self.__v_crew_member:
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"%... | 44.555556 | 19.888889 |
def setupSources(self, config):
"""Sets up source objects from the given config"""
sources = config.get('sources', [])
for source in sources:
src = self.createSource(source)
self.setupTriggers(source, src)
self.sources.append(src) | [
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def findNestedUnions(self, lst):
'''
Recursive helper function for finding nested unions. If this node is a class or
struct it may have had a union added to its child list. When this occurred, the
union was removed from ``self.unions`` in the :class:`~exhale.graph.ExhaleRoot`
c... | [
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def resolve_dst(self, dst_dir, src):
"""
finds the destination based on source
if source is an absolute path, and there's no pattern, it copies the file to base dst_dir
"""
if os.path.isabs(src):
return os.path.join(dst_dir, os.path.basename(src))
return os.pa... | [
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def profile_function(self):
"""Runs cProfile on a function."""
prof = cProfile.Profile()
prof.enable()
result = self._run_object(*self._run_args, **self._run_kwargs)
prof.disable()
prof_stats = pstats.Stats(prof)
prof_stats.calc_callees()
return {
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def run_command(self, commands, timeout_sec=None, exception=None):
"""
Executes the given commands and sends OVSDB messages.
``commands`` must be a list of
:py:mod:`ryu.lib.ovs.vsctl.VSCtlCommand`.
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def list_fence(self, filename):
'''list fence points, optionally saving to a file'''
self.fenceloader.clear()
count = self.get_mav_param('FENCE_TOTAL', 0)
if count == 0:
print("No geo-fence points")
return
for i in range(int(count)):
p = self.f... | [
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def add_defs(self, variable, locations, size_threshold=32):
"""
Add a collection of new definitions of a variable.
:param SimVariable variable: The variable being defined.
:param iterable locations: A collection of locations where the variable was defined.
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def init(args=None, lib='standard'):
"""Intialize the rabit module, call this once before using anything.
Parameters
----------
args: list of str, optional
The list of arguments used to initialized the rabit
usually you need to pass in sys.argv.
Defaults to sys.argv when it is N... | [
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def pow(cls, x: 'TensorFluent', y: 'TensorFluent') -> 'TensorFluent':
'''Returns a TensorFluent for the pow function.TensorFluent
Args:
x: The first operand.
y: The second operand.
Returns:
A TensorFluent wrapping the pow function.
'''
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def inspect_image(self, image_id):
"""
return detailed metadata about provided image (see 'man docker-inspect')
:param image_id: str or ImageName, id or name of the image
:return: dict
"""
logger.info("inspecting image '%s'", image_id)
logger.debug("image_id = '%... | [
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def in_scope(self, exclude_scopes=None, include_scopes=None):
"""Whether this scope should be included by the given inclusion and exclusion rules.
:param Scope exclude_scopes: An optional Scope containing scope names to exclude. None (the
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def release_apply(ui, repo, clname, **opts):
"""apply a CL to the release branch
Creates a new CL copying a previously committed change
from the main branch to the release branch.
The current client must either be clean or already be in
the release branch.
The release branch must be created by starting with a
... | [
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def load_global_settings():
"""Loads settings file containing paths to dependencies and other optional configuration elements."""
with open(settings_path, 'r') as settings_f:
global global_settings
settings_json = json.loads(settings_f.read())
if global_settings is None:
glob... | [
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def compile(self, cost, name_scope="train"):
"""Compile the optimizer with the given training parameters.
Parameters
----------
cost : Tensor
A Tensor containing the value to minimize.
name_scope : str , optional (default="train")
Optional name scope for ... | [
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def create_index(manager, prop, node_type='Node'):
"""
:param manager: Neo4jDBSessionManager
:param prop: Property to index
:param node_type: Label to create index on
:type manager: Neo4jDBSessionManager
:type prop: str
:type node_type: str
"""
with manager.session as s:
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def generate_api_resources():
"""Generate the Blockade API endpoints."""
client = boto3.client('apigateway', region_name=PRIMARY_REGION)
matches = [x for x in client.get_rest_apis().get('items', list())
if x['name'] == API_GATEWAY]
match = matches.pop()
iam = boto3.resource('iam')
... | [
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... | 42.019231 | 21.096154 |
def get_homology_models(self):
"""DictList: Return a DictList of all homology models in self.structures"""
# TODO: change to a property?
if self.representative_structure:
return DictList(x for x in self.structures if not x.is_experimental and x.id != self.representative_structure.id)... | [
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def reshape_like(a, b):
"""Reshapes a to match the shape of b in all but the last dimension."""
ret = tf.reshape(a, tf.concat([tf.shape(b)[:-1], tf.shape(a)[-1:]], 0))
if not tf.executing_eagerly():
ret.set_shape(b.get_shape().as_list()[:-1] + a.get_shape().as_list()[-1:])
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def make_value_from_datastore(self, value):
"""Convert value from datastore representation.
Args:
value: datastore value.
Returns:
value to store in the model.
"""
if value is None:
return None
_json = json.loads(value, cls=JsonDecoder)
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def list_to_string(input, delimiter):
"""converts list to string recursively so that nested lists are supported
:param input: a list of strings and lists of strings (and so on recursive)
:type input: list
:param delimiter: the deimiter to use when joining the items
:type delimiter: str
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def _prep_message(self):
"""Performs initial message setup.
:raises MasterKeyProviderError: if primary master key is not a member of supplied MasterKeyProvider
:raises MasterKeyProviderError: if no Master Keys are returned from key_provider
"""
message_id = aws_encryption_sdk.in... | [
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def get_base_image_info(self):
"""
query docker about base image
:return dict
"""
if self.base_from_scratch:
return
logger.info("getting information about base image '%s'", self.base_image)
image_info = self.tasker.get_image_info_by_image_name(self.ba... | [
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def list(self, to=values.unset, from_=values.unset,
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start_time_before=values.unset, start_time=values.unset,
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def get_musiclibrary():
lib_files = music_library.get_file_list(config.library_path)
global lib
lib = music_library.parse_library(lib_files)
""":type :musiclibrary.MusicLibrary"""
return lib | [
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def convert_bytes(bytes):
"""
Convert bytes into human readable
"""
bytes = float(bytes)
if bytes >= 1099511627776:
terabytes = bytes / 1099511627776
size = '%.2fT' % terabytes
elif bytes >= 1073741824:
gigabytes = bytes / 1073741824
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def postponed_from(self):
"""
Date that the event was postponed from (in the local time zone).
"""
fromDate = getLocalDate(self.except_date, self.time_from, self.tz)
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def mfcc(wav_path):
""" Grabs MFCC features with energy and derivates. """
(rate, sig) = wav.read(wav_path)
feat = python_speech_features.mfcc(sig, rate, appendEnergy=True)
delta_feat = python_speech_features.delta(feat, 2)
all_feats = [feat, delta_feat]
all_feats = np.array(all_feats)
# Ma... | [
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def protected_view(view, info):
"""allows adding `protected=True` to a view_config`"""
if info.options.get('protected'):
def wrapper_view(context, request):
response = _advice(request)
if response is not None:
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def _adjust_rate_aggressive(self, real_wave_mfcc, algo_parameters):
"""
RATEAGGRESSIVE
"""
self.log(u"Called _adjust_rate_aggressive")
self._apply_rate(max_rate=algo_parameters[0], aggressive=True) | [
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def rank_member_in(
self, leaderboard_name, member, score, member_data=None):
'''
Rank a member in the named leaderboard.
@param leaderboard_name [String] Name of the leaderboard.
@param member [String] Member name.
@param score [float] Member score.
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def image_search(auth=None, **kwargs):
'''
Search for images
CLI Example:
.. code-block:: bash
salt '*' glanceng.image_search name=image1
salt '*' glanceng.image_search
'''
cloud = get_operator_cloud(auth)
kwargs = _clean_kwargs(**kwargs)
return cloud.search_images(**k... | [
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def save_model(self, request, entry, form, change):
"""
Fill the content field with the interpretation
of the placeholder
"""
context = RequestContext(request)
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content = render_placeholder(entry.content_placeholder, context)
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def defer(callable):
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... print('bar')
>>> join = defer(foo)
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def get_graphics_control_ext(self, duration=0.1, dispose=2, transparent_flag=0, transparency_index=0):
""" get_graphics_control_ext(duration=0.1, dispose=2)
Graphics Control Extension. A sort of header at the start of
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def _filter_meta_data(self, source, soup, data, url=None):
"""This method filters the web page content for meta tags that match patterns given in the ``FILTER_MAPS``
:param source: The key of the meta dictionary in ``FILTER_MAPS['meta']``
:type source: string
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def list_schemas(repo):
"""
Return a list of parsed avro schemas as dictionaries.
:param Repo repo:
The git repository.
:returns: dict
"""
schema_files = glob.glob(
os.path.join(repo.working_dir, '_schemas', '*.avsc'))
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def _addsub_offset_array(self, other, op):
"""
Add or subtract array-like of DateOffset objects
Parameters
----------
other : Index, np.ndarray
object-dtype containing pd.DateOffset objects
op : {operator.add, operator.sub}
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def ekccnt(table):
"""
Return the number of distinct columns in a specified,
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http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/ekccnt_c.html
:param table: Name of table.
:type table: str
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def get_vnetwork_dvs_output_vnetwork_dvs_host(self, **kwargs):
"""Auto Generated Code
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def _fallback(self, section_name, pref_name):
"""
Create a fallback preference object,
This is used when you have model instances that do not match
any registered preferences, see #41
"""
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def _set_src_host_ip(self, v, load=False):
"""
Setter method for src_host_ip, mapped from YANG variable /ipv6_acl/ipv6/access_list/extended/seq/src_host_ip (sip)
If this variable is read-only (config: false) in the
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def get_min_max_mag(self):
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def fix_e713(self, result):
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(line_index, offset, target) = get_index_offset_contents(result,
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def opacity( self ):
"""
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"""
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def setup_geoserver(options):
from geonode.settings import INSTALLED_APPS, OGC_SERVER
"""Prepare a testing instance of GeoServer."""
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_backend = os.environ.get('BACKEND', OGC_SERVER['default']['BACKEND'])
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def _backward_impl(self):
"""Actual implementation of the backward computation. The computation
should take ``self._scores`` and ``self._labels`` and then compute the
gradients with respect to the scores, store it as an `NDArray` in
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def generate_look_up_table():
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:return: List
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def translation_generator(
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min_transcript_prefix_length,
max_transcript_mismatches,
include_mismatches_after_variant,
protein_sequence_length=None):
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def get_file(path, s3_bucket=None):
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if bucket_name:
bucket = get_bucket(bucket_name)
key = bucket.get_key(path)
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def gen(mimetype):
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@app.route('/')
@gen('')
def index():
pass
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def validate(model:nn.Module, dl:DataLoader, loss_func:OptLossFunc=None, cb_handler:Optional[CallbackHandler]=None,
pbar:Optional[PBar]=None, average=True, n_batch:Optional[int]=None)->Iterator[Tuple[Union[Tensor,int],...]]:
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def export_profile(self):
""" Export minimum needs to a json file.
This method will save the current state of the minimum needs setup.
Then open a dialog allowing the user to browse to the desired
destination location and allow the user to save the needs as a json
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def from_classes(cls,
im_model_cls, im_model_config, expl_dims,
sm_model_cls, sm_model_config, inf_dims,
m_mins, m_maxs, s_mins, s_maxs, n_bootstrap=0, context_mode=None):
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def generate_docs(self, clspath, more_content):
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obj = import_class(clspath)
sourcename = 'docstring of %s' % clspath
all_options = []
indent = ' '
config = obj.get_required_config()
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def plot_margins(*, fig=None, inches=1., centers=True, edges=True):
"""Add lines onto a figure indicating the margins, centers, and edges.
Useful for ensuring your figure design scripts work as intended, and for laying
out figures.
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def surface(func, umin=0, umax=2 * np.pi, ucount=64, urepeat=1.0,
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"""
Computes the parameterization of a parametric surface
func: function(u,v)
Parametric function used to build the surface
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def make_tsmap_plots(self, maps, roi=None, **kwargs):
"""Make plots from the output of
`~fermipy.gtanalysis.GTAnalysis.tsmap` or
`~fermipy.gtanalysis.GTAnalysis.tscube`. This method
generates a 2D sky map for the best-fit test source in
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def infer_timedelta_units(deltas):
"""Given an array of timedeltas, returns a CF compatible time-unit from
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divide all unique time deltas in `deltas`)
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deltas = pd.to_timedelta(np.asarray(deltas).ravel(), box=False)
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"(",... | 48.555556 | 15 |
def from_local_repository(repository_path, refspec=None):
""" Retrieves the git context from a local git repository.
:param repository_path: Path to the git repository to retrieve the context from
:param refspec: The commit(s) to retrieve
"""
context = GitContext()
# If... | [
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"# We tried many thing... | 52.222222 | 35.4 |
def as_list(self):
"""
Return an *ordered* list of the source attributes
"""
self._sanitise()
l = []
for name in self.names:
l.append(getattr(self, name))
return l | [
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def handle_keypress(self):
"""When hitting tab, it handles if single or double tab"""
if self.numpress == 2:
self.sig_double_tab_pressed.emit(True)
self.numpress = 0 | [
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def ib64_patched(self, attrsD, contentparams):
""" Patch isBase64 to prevent Base64 encoding of JSON content
"""
if attrsD.get("mode", "") == "base64":
return 0
if self.contentparams["type"].startswith("text/"):
return 0
if self.contentparams["type"].endswith("+xml"):
return ... | [
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"st... | 32.857143 | 14.571429 |
def match(self, subj=None, pred=None, obj=None, attrs=None):
'''
Retrieve an iterator of relationship IDs that match a pattern of components
subj - optional subject or origin of the relationship, an IRI coded as a unicode object. If omitted any subject will be matched.
pred - optional p... | [
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"and_placeholder",... | 71.283019 | 47.584906 |
def _get_identical_contigs(self, hits_dict):
'''Input is a dict:
key=contig name. Value = set of contigs that contain the key.
Returns a list of sets of contigs that are equivalent'''
equivalent_contigs = []
for qry_name, containing in hits_dict.items():
equi... | [
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"containing_name",... | 42.222222 | 20.888889 |
def setUserPushTag(self, userTag):
"""
添加 Push 标签方法 方法
@param userTag:用户标签。
@return code:返回码,200 为正常。
@return errorMessage:错误信息。
"""
desc = {
"name": "CodeSuccessReslut",
"desc": " http 成功返回结果",
"fields": [{
"n... | [
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"\"Inte... | 26.444444 | 12.407407 |
def create_node(self, bank, tags=None):
"""
Set up a CondorDagmanNode class to run splitbank code
Parameters
----------
bank : pycbc.workflow.core.File
The File containing the template bank to be split
Returns
--------
node : pycbc.workflow.c... | [
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")",... | 36.69697 | 17.060606 |
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