kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def cmd_set_homepos(self, args): '''called when user selects "Set Home" on map''' (lat, lon) = (self.click_position[0], self.click_position[1]) print("Setting home to: ", lat, lon) self.master.mav.command_int_send( self.settings.target_system, self.settings.target_component, ...	[ "def", "cmd_set_homepos", "(", "self", ",", "args", ")", ":", "(", "lat", ",", "lon", ")", "=", "(", "self", ".", "click_position", "[", "0", "]", ",", "self", ".", "click_position", "[", "1", "]", ")", "print", "(", "\"Setting home to: \"", ",", "la...	37.941176	15.235294
def next(self): """ Return all files in folder. """ # get depth of starting root directory base_depth = self.__root.count(os.path.sep) # walk files and folders for root, subFolders, files in os.walk(self.__root): # apply folder filter if ...	[ "def", "next", "(", "self", ")", ":", "# get depth of starting root directory", "base_depth", "=", "self", ".", "__root", ".", "count", "(", "os", ".", "path", ".", "sep", ")", "# walk files and folders", "for", "root", ",", "subFolders", ",", "files", "in", ...	28.870968	16.225806
def page(request): """ Adds the current page to the template context and runs its ``set_helper`` method. This was previously part of ``PageMiddleware``, but moved to a context processor so that we could assign these template context variables without the middleware depending on Django's ``Templa...	[ "def", "page", "(", "request", ")", ":", "context", "=", "{", "}", "page", "=", "getattr", "(", "request", ",", "\"page\"", ",", "None", ")", "if", "isinstance", "(", "page", ",", "Page", ")", ":", "# set_helpers has always expected the current template contex...	42.411765	17
def send_work(self): '''Sends the query to the actor for it to start executing the work. It is possible to execute once again a future that has finished if necessary (overwriting the results), but only one execution at a time. ''' if self.__set_running(): ...	[ "def", "send_work", "(", "self", ")", ":", "if", "self", ".", "__set_running", "(", ")", ":", "# msg = FutureRequest(FUTURE, self.__method, self.__params,", "# self.__channel, self.__target, self.__id)", "msg", "=", "{", "TYPE", ":", "FUTURE", ",", "ME...	43.411765	24.117647
def str_repeat(arr, repeats): """ Duplicate each string in the Series or Index. Parameters ---------- repeats : int or sequence of int Same value for all (int) or different value per (sequence). Returns ------- Series or Index of object Series or Index of repeated strin...	[ "def", "str_repeat", "(", "arr", ",", "repeats", ")", ":", "if", "is_scalar", "(", "repeats", ")", ":", "def", "scalar_rep", "(", "x", ")", ":", "try", ":", "return", "bytes", ".", "__mul__", "(", "x", ",", "repeats", ")", "except", "TypeError", ":",...	21.915254	21.711864
def _pretty_dump(self, label, data): """Print modbus/TCP frame ('[header]body') or RTU ('body[CRC]') on stdout :param label: modbus function code :type label: str :param data: modbus frame :type data: str (Python2) or class bytes (Python3) """ # split dat...	[ "def", "_pretty_dump", "(", "self", ",", "label", ",", "data", ")", ":", "# split data string items to a list of hex value", "dump", "=", "[", "'%02X'", "%", "c", "for", "c", "in", "bytearray", "(", "data", ")", "]", "# format for TCP or RTU", "if", "self", "....	31.821429	11.571429
def reset(self): """Reset stacks and instruction pointer.""" self.data_stack = stack.Stack() self.return_stack = stack.Stack() self.instruction_pointer = 0 return self	[ "def", "reset", "(", "self", ")", ":", "self", ".", "data_stack", "=", "stack", ".", "Stack", "(", ")", "self", ".", "return_stack", "=", "stack", ".", "Stack", "(", ")", "self", ".", "instruction_pointer", "=", "0", "return", "self" ]	33.666667	8.5
def compute_etag(self) -> Optional[str]: """Sets the ``Etag`` header based on static url version. This allows efficient ``If-None-Match`` checks against cached versions, and sends the correct ``Etag`` for a partial response (i.e. the same ``Etag`` as the full file). .. versiona...	[ "def", "compute_etag", "(", "self", ")", "->", "Optional", "[", "str", "]", ":", "assert", "self", ".", "absolute_path", "is", "not", "None", "version_hash", "=", "self", ".", "_get_cached_version", "(", "self", ".", "absolute_path", ")", "if", "not", "ver...	38.285714	15.928571
def _fw_rule_create(self, drvr_name, data, cache): """Firewall Rule create routine. This function updates its local cache with rule parameters. It checks if local cache has information about the Policy associated with the rule. If not, it means a restart has happened. It retriev...	[ "def", "_fw_rule_create", "(", "self", ",", "drvr_name", ",", "data", ",", "cache", ")", ":", "tenant_id", "=", "data", ".", "get", "(", "'firewall_rule'", ")", ".", "get", "(", "'tenant_id'", ")", "fw_rule", "=", "data", ".", "get", "(", "'firewall_rule...	50.08	16.68
def temporary_chdir(new_dir): """ Like os.chdir(), but always restores the old working directory For example, code like this... old_curdir = os.getcwd() os.chdir('stuff') do_some_stuff() os.chdir(old_curdir) ...leaves the current working directory unchanged if do_some_...	[ "def", "temporary_chdir", "(", "new_dir", ")", ":", "old_dir", "=", "os", ".", "getcwd", "(", ")", "os", ".", "chdir", "(", "new_dir", ")", "try", ":", "yield", "finally", ":", "os", ".", "chdir", "(", "old_dir", ")" ]	22.8125	20.0625
def create_new_dispatch(self, dispatch): """ Create a new dispatch :param dispatch: is the new dispatch that the client wants to create """ self._validate_uuid(dispatch.dispatch_id) # Create new dispatch url = "/notification/v1/dispatch" post_resp...	[ "def", "create_new_dispatch", "(", "self", ",", "dispatch", ")", ":", "self", ".", "_validate_uuid", "(", "dispatch", ".", "dispatch_id", ")", "# Create new dispatch", "url", "=", "\"/notification/v1/dispatch\"", "post_response", "=", "NWS_DAO", "(", ")", ".", "po...	34.588235	12.705882
def _get_close_args(self, data): """ this functions extracts the code, reason from the close body if they exists, and if the self.on_close except three arguments """ # if the on_close callback is "old", just return empty list if sys.version_info < (3, 0): if not self.on_close...	[ "def", "_get_close_args", "(", "self", ",", "data", ")", ":", "# if the on_close callback is \"old\", just return empty list", "if", "sys", ".", "version_info", "<", "(", "3", ",", "0", ")", ":", "if", "not", "self", ".", "on_close", "or", "len", "(", "inspect...	43.176471	19.588235
def is_annual(self): """Check if an analysis period is annual.""" if (self.st_month, self.st_day, self.st_hour, self.end_month, self.end_day, self.end_hour) == (1, 1, 0, 12, 31, 23): return True else: return False	[ "def", "is_annual", "(", "self", ")", ":", "if", "(", "self", ".", "st_month", ",", "self", ".", "st_day", ",", "self", ".", "st_hour", ",", "self", ".", "end_month", ",", "self", ".", "end_day", ",", "self", ".", "end_hour", ")", "==", "(", "1", ...	39.857143	18.714286
def add_binary_content_type(application, content_type, pack, unpack): """ Add handler for a binary content type. :param tornado.web.Application application: the application to modify :param str content_type: the content type to add :param pack: function that packs a dictionary to a byte string. ...	[ "def", "add_binary_content_type", "(", "application", ",", "content_type", ",", "pack", ",", "unpack", ")", ":", "add_transcoder", "(", "application", ",", "handlers", ".", "BinaryContentHandler", "(", "content_type", ",", "pack", ",", "unpack", ")", ")" ]	40.571429	19.285714
def makeEndOfPrdvFuncCond(self): ''' Construct the end-of-period value function conditional on next period's state. NOTE: It might be possible to eliminate this method and replace it with ConsIndShockSolver.makeEndOfPrdvFunc, but the self.X_cond variables must be renamed. ...	[ "def", "makeEndOfPrdvFuncCond", "(", "self", ")", ":", "VLvlNext", "=", "(", "self", ".", "PermShkVals_temp", "*", "(", "1.0", "-", "self", ".", "CRRA", ")", "", "self", ".", "PermGroFac", "*", "(", "1.0", "-", "self", ".", "CRRA", ")", ")", "", ...	49.535714	29.75
def update(self, **kwargs): ''' validates the given data against this object's rules and then updates ''' redis = type(self).get_redis() errors = ValidationErrors() for fieldname, field in self.proxy: if not field.fillable: continue given...	[ "def", "update", "(", "self", ",", "", "", "kwargs", ")", ":", "redis", "=", "type", "(", "self", ")", ".", "get_redis", "(", ")", "errors", "=", "ValidationErrors", "(", ")", "for", "fieldname", ",", "field", "in", "self", ".", "proxy", ":", "if...	23.935484	20.258065
def init(deb1, deb2=False): """Initialize DEBUG and DEBUGALL. Allows other modules to set DEBUG and DEBUGALL, so their call to dprint or dprintx generate output. Args: deb1 (bool): value of DEBUG to set deb2 (bool): optional - value of DEBUGALL to set, defaults to ...	[ "def", "init", "(", "deb1", ",", "deb2", "=", "False", ")", ":", "global", "DEBUG", "# pylint: disable=global-statement", "global", "DEBUGALL", "# pylint: disable=global-statement", "DEBUG", "=", "deb1", "DEBUGALL", "=", "deb2" ]	29.6875	18.1875
def __get_labels(self): """ Read the label file of the documents and extract all the labels Returns: An array of labels.Label objects """ labels = [] try: with self.fs.open(self.fs.join(self.path, self.LABEL_FILE), ...	[ "def", "__get_labels", "(", "self", ")", ":", "labels", "=", "[", "]", "try", ":", "with", "self", ".", "fs", ".", "open", "(", "self", ".", "fs", ".", "join", "(", "self", ".", "path", ",", "self", ".", "LABEL_FILE", ")", ",", "'r'", ")", "as"...	34.631579	17.789474
def parseconf (self, filename): """Parse clamav configuration from given file.""" with open(filename) as fd: # yet another config format, sigh for line in fd: line = line.strip() if not line or line.startswith("#"): # ignore emp...	[ "def", "parseconf", "(", "self", ",", "filename", ")", ":", "with", "open", "(", "filename", ")", "as", "fd", ":", "# yet another config format, sigh", "for", "line", "in", "fd", ":", "line", "=", "line", ".", "strip", "(", ")", "if", "not", "line", "o...	39.071429	7.714286
def ifusergroup(parser, token): """ Check to see if the currently logged in user belongs to a specific group. Requires the Django authentication contrib app and middleware. Usage: {% ifusergroup Admins %} ... {% endifusergroup %}, or {% ifusergroup Admins Clients Sellers %} ... {% else %} ... {%...	[ "def", "ifusergroup", "(", "parser", ",", "token", ")", ":", "try", ":", "tokensp", "=", "token", ".", "split_contents", "(", ")", "groups", "=", "[", "]", "groups", "+=", "tokensp", "[", "1", ":", "]", "except", "ValueError", ":", "raise", "template",...	35.2	23.24
def create_checksum_object_from_iterator( itr, algorithm=d1_common.const.DEFAULT_CHECKSUM_ALGORITHM ): """Calculate the checksum of an iterator. Args: itr: iterable Object which supports the iterator protocol. algorithm: str Checksum algorithm, ``MD5`` or ``SHA1`` / ``SHA-1``. ...	[ "def", "create_checksum_object_from_iterator", "(", "itr", ",", "algorithm", "=", "d1_common", ".", "const", ".", "DEFAULT_CHECKSUM_ALGORITHM", ")", ":", "checksum_str", "=", "calculate_checksum_on_iterator", "(", "itr", ",", "algorithm", ")", "checksum_pyxb", "=", "d...	28.2	21.4
def subset_sum(x, R): """Subsetsum :param x: table of non negative values :param R: target value :returns bool: True if a subset of x sums to R :complexity: O(nR) """ b = [False] (R + 1) b[0] = True for xi in x: for s in range(R, xi - 1, -1): b[s] \|= b[s - xi]...	[ "def", "subset_sum", "(", "x", ",", "R", ")", ":", "b", "=", "[", "False", "]", "*", "(", "R", "+", "1", ")", "b", "[", "0", "]", "=", "True", "for", "xi", "in", "x", ":", "for", "s", "in", "range", "(", "R", ",", "xi", "-", "1", ",", ...	23.071429	14.571429
def delete_certificate(ctx, slot, management_key, pin): """ Delete a certificate. Delete a certificate from a slot on the YubiKey. """ controller = ctx.obj['controller'] _ensure_authenticated(ctx, controller, pin, management_key) controller.delete_certificate(slot)	[ "def", "delete_certificate", "(", "ctx", ",", "slot", ",", "management_key", ",", "pin", ")", ":", "controller", "=", "ctx", ".", "obj", "[", "'controller'", "]", "_ensure_authenticated", "(", "ctx", ",", "controller", ",", "pin", ",", "management_key", ")",...	31.777778	12
def print_diskinfo(diskinfo, widelayout, incolor): ''' Disk information output function. ''' sep = ' ' if opts.relative: import math base = max([ disk.ocap for disk in diskinfo ]) for disk in diskinfo: if disk.ismntd: ico = _diskico else: ico = _unmnico...	[ "def", "print_diskinfo", "(", "diskinfo", ",", "widelayout", ",", "incolor", ")", ":", "sep", "=", "' '", "if", "opts", ".", "relative", ":", "import", "math", "base", "=", "max", "(", "[", "disk", ".", "ocap", "for", "disk", "in", "diskinfo", "]", "...	34	19.52381
def read_config(conf_dir=DEFAULT_CONFIG_DIR): "Find and read config file for a directory, return None if not found." conf_path = os.path.expanduser(conf_dir) if not os.path.exists(conf_path): # only throw if not default if conf_dir != DEFAULT_CONFIG_DIR: raise IOError("Config di...	[ "def", "read_config", "(", "conf_dir", "=", "DEFAULT_CONFIG_DIR", ")", ":", "conf_path", "=", "os", ".", "path", ".", "expanduser", "(", "conf_dir", ")", "if", "not", "os", ".", "path", ".", "exists", "(", "conf_path", ")", ":", "# only throw if not default"...	41.9	19.5
def action_verify_checksum(self, ids): """Inactivate users.""" try: count = 0 for file_id in ids: f = FileInstance.query.filter_by( id=uuid.UUID(file_id)).one_or_none() if f is None: raise ValueError(_("Canno...	[ "def", "action_verify_checksum", "(", "self", ",", "ids", ")", ":", "try", ":", "count", "=", "0", "for", "file_id", "in", "ids", ":", "f", "=", "FileInstance", ".", "query", ".", "filter_by", "(", "id", "=", "uuid", ".", "UUID", "(", "file_id", ")",...	39.684211	14.789474
def readLipd(usr_path=""): """ Read LiPD file(s). Enter a file path, directory path, or leave args blank to trigger gui. :param str usr_path: Path to file / directory (optional) :return dict _d: Metadata """ global cwd, settings, files if settings["verbose"]: __disclaimer(opt="u...	[ "def", "readLipd", "(", "usr_path", "=", "\"\"", ")", ":", "global", "cwd", ",", "settings", ",", "files", "if", "settings", "[", "\"verbose\"", "]", ":", "__disclaimer", "(", "opt", "=", "\"update\"", ")", "start", "=", "clock", "(", ")", "files", "["...	28.388889	16.611111
def get(self,key,default=None): """Get a value from the dictionary. Args: key (str): The dictionary key. default (any): The default to return if the key is not in the dictionary. Defaults to None. Returns: str or any: The dictionary value or ...	[ "def", "get", "(", "self", ",", "key", ",", "default", "=", "None", ")", ":", "retval", "=", "self", ".", "__getitem__", "(", "key", ")", "if", "not", "retval", ":", "retval", "=", "default", "return", "retval" ]	27.444444	19.666667
def start(self): ''' doesn't work''' thread = threading.Thread(target=reactor.run) thread.start()	[ "def", "start", "(", "self", ")", ":", "thread", "=", "threading", ".", "Thread", "(", "target", "=", "reactor", ".", "run", ")", "thread", ".", "start", "(", ")" ]	29.5	17
def hexadecimal(token): """ Convert a strip of hexadecimal numbers into binary data. @type token: str @param token: String to parse. @rtype: str @return: Parsed string value. """ token = ''.join([ c for c in token if c.isalnum() ]) if len(token...	[ "def", "hexadecimal", "(", "token", ")", ":", "token", "=", "''", ".", "join", "(", "[", "c", "for", "c", "in", "token", "if", "c", ".", "isalnum", "(", ")", "]", ")", "if", "len", "(", "token", ")", "%", "2", "!=", "0", ":", "raise", "ValueE...	28.9	15.7
def get_gpg_home( appname, config_dir=None ): """ Get the GPG keyring directory for a particular application. Return the path. """ assert is_valid_appname(appname) config_dir = get_config_dir( config_dir ) path = os.path.join( config_dir, "gpgkeys", appname ) return path	[ "def", "get_gpg_home", "(", "appname", ",", "config_dir", "=", "None", ")", ":", "assert", "is_valid_appname", "(", "appname", ")", "config_dir", "=", "get_config_dir", "(", "config_dir", ")", "path", "=", "os", ".", "path", ".", "join", "(", "config_dir", ...	32.777778	11
def add_member(self, user, state=MembershipState.ACTIVE): """Invite a user to a group. :param user: User to be added as a group member. :param state: MembershipState. Default: MembershipState.ACTIVE. :returns: Membership object or None. """ return Membership.create(self,...	[ "def", "add_member", "(", "self", ",", "user", ",", "state", "=", "MembershipState", ".", "ACTIVE", ")", ":", "return", "Membership", ".", "create", "(", "self", ",", "user", ",", "state", ")" ]	40.75	14.875
def touch_project(): """ Touches the project to trigger refreshing its cauldron.json state. """ r = Response() project = cd.project.get_internal_project() if project: project.refresh() else: r.fail( code='NO_PROJECT', message='No open project to refre...	[ "def", "touch_project", "(", ")", ":", "r", "=", "Response", "(", ")", "project", "=", "cd", ".", "project", ".", "get_internal_project", "(", ")", "if", "project", ":", "project", ".", "refresh", "(", ")", "else", ":", "r", ".", "fail", "(", "code",...	22.611111	19.166667
def max_width(self): """Get maximum width of progress bar :rtype: int :returns: Maximum column width of progress bar """ value, unit = float(self._width_str[:-1]), self._width_str[-1] ensure(unit in ["c", "%"], ValueError, "Width unit must be either 'c' o...	[ "def", "max_width", "(", "self", ")", ":", "value", ",", "unit", "=", "float", "(", "self", ".", "_width_str", "[", ":", "-", "1", "]", ")", ",", "self", ".", "_width_str", "[", "-", "1", "]", "ensure", "(", "unit", "in", "[", "\"c\"", ",", "\"...	34.73913	19.130435
def sleep(duration): ''' Sleeps for duration seconds in increments of 0.5 seconds. Use this so that the sleep can be interrupted by thread_raise(). ''' import time start = time.time() while True: elapsed = time.time() - start if elapsed >= duration: break ...	[ "def", "sleep", "(", "duration", ")", ":", "import", "time", "start", "=", "time", ".", "time", "(", ")", "while", "True", ":", "elapsed", "=", "time", ".", "time", "(", ")", "-", "start", "if", "elapsed", ">=", "duration", ":", "break", "time", "....	26.846154	21.923077
def _FormatTypeCheck(type_): """Pretty format of type check.""" if isinstance(type_, tuple): items = [_FormatTypeCheck(t) for t in type_] return "(%s)" % ", ".join(items) elif hasattr(type_, "__name__"): return type_.__name__ else: return repr(type_)	[ "def", "_FormatTypeCheck", "(", "type_", ")", ":", "if", "isinstance", "(", "type_", ",", "tuple", ")", ":", "items", "=", "[", "_FormatTypeCheck", "(", "t", ")", "for", "t", "in", "type_", "]", "return", "\"(%s)\"", "%", "\", \"", ".", "join", "(", ...	29.555556	11.777778
def printParams(paramDictionary, all=False, log=None): """ Print nicely the parameters from the dictionary. """ if log is not None: def output(msg): log.info(msg) else: def output(msg): print(msg) if not paramDictionary: output('No parameters wer...	[ "def", "printParams", "(", "paramDictionary", ",", "all", "=", "False", ",", "log", "=", "None", ")", ":", "if", "log", "is", "not", "None", ":", "def", "output", "(", "msg", ")", ":", "log", ".", "info", "(", "msg", ")", "else", ":", "def", "out...	29.181818	17.636364
def add(self, operator, args): """Adds a proximal operator to the list of operators""" if isinstance(operator, str): op = getattr(proxops, operator)(args) elif isinstance(operator, proxops.ProximalOperatorBaseClass): op = operator else: raise ValueE...	[ "def", "add", "(", "self", ",", "operator", ",", "", "args", ")", ":", "if", "isinstance", "(", "operator", ",", "str", ")", ":", "op", "=", "getattr", "(", "proxops", ",", "operator", ")", "(", "", "args", ")", "elif", "isinstance", "(", "operat...	35.916667	21
def xml_parser(self, scode, *args): """ args[0]: xpath args[1]: text / html / xml """ allow_method = ('text', 'html', 'xml') xpath_string, method = args assert method in allow_method, 'method allow: %s' % allow_method result = self.ensure_list( ...	[ "def", "xml_parser", "(", "self", ",", "scode", ",", "*", "args", ")", ":", "allow_method", "=", "(", "'text'", ",", "'html'", ",", "'xml'", ")", "xpath_string", ",", "method", "=", "args", "assert", "method", "in", "allow_method", ",", "'method allow: %s'...	32.388889	15.611111
async def _default_help_command(ctx, *commands : str): """Shows this message.""" bot = ctx.bot destination = ctx.message.author if bot.pm_help else ctx.message.channel def repl(obj): return _mentions_transforms.get(obj.group(0), '') # help by itself just lists our own commands. if len(...	[ "async", "def", "_default_help_command", "(", "ctx", ",", "*", "commands", ":", "str", ")", ":", "bot", "=", "ctx", ".", "bot", "destination", "=", "ctx", ".", "message", ".", "author", "if", "bot", ".", "pm_help", "else", "ctx", ".", "message", ".", ...	39.72	23.46
def get_preservation_data(self): """Returns a list of Preservation data """ for obj in self.get_preservations(): info = self.get_base_info(obj) yield info	[ "def", "get_preservation_data", "(", "self", ")", ":", "for", "obj", "in", "self", ".", "get_preservations", "(", ")", ":", "info", "=", "self", ".", "get_base_info", "(", "obj", ")", "yield", "info" ]	32.833333	5.333333
def update_dimension(dimension,**kwargs): """ Update a dimension in the DB. Raises and exception if the dimension does not exist. The key is ALWAYS the name and the name itself is not modificable """ db_dimension = None dimension = JSONObject(dimension) try: db_dimens...	[ "def", "update_dimension", "(", "dimension", ",", "", "", "kwargs", ")", ":", "db_dimension", "=", "None", "dimension", "=", "JSONObject", "(", "dimension", ")", "try", ":", "db_dimension", "=", "db", ".", "DBSession", ".", "query", "(", "Dimension", ")"...	43.714286	26.952381
def _list_model(self, model_cls: Type[X]) -> List[X]: """List the models in this class.""" return self.session.query(model_cls).all()	[ "def", "_list_model", "(", "self", ",", "model_cls", ":", "Type", "[", "X", "]", ")", "->", "List", "[", "X", "]", ":", "return", "self", ".", "session", ".", "query", "(", "model_cls", ")", ".", "all", "(", ")" ]	49	7.666667
def encode_list(data, encoding=None, errors='strict', keep=False, preserve_dict_class=False, preserve_tuples=False): ''' Encode all string values to bytes ''' rv = [] for item in data: if isinstance(item, list): item = encode_list(item, encoding, errors, keep, ...	[ "def", "encode_list", "(", "data", ",", "encoding", "=", "None", ",", "errors", "=", "'strict'", ",", "keep", "=", "False", ",", "preserve_dict_class", "=", "False", ",", "preserve_tuples", "=", "False", ")", ":", "rv", "=", "[", "]", "for", "item", "i...	41.125	21.5
def read_config(self, path): """Read configuration file.""" PYVLXLOG.info('Reading config file: %s', path) try: with open(path, 'r') as filehandle: doc = yaml.safe_load(filehandle) self.test_configuration(doc, path) self.host = doc['con...	[ "def", "read_config", "(", "self", ",", "path", ")", ":", "PYVLXLOG", ".", "info", "(", "'Reading config file: %s'", ",", "path", ")", "try", ":", "with", "open", "(", "path", ",", "'r'", ")", "as", "filehandle", ":", "doc", "=", "yaml", ".", "safe_loa...	45.307692	11.769231
def _indent_line(self, line, stripspace=''): """indent the given line according to the current indent level. stripspace is a string of space that will be truncated from the start of the line before indenting.""" return re.sub(r"^%s" % stripspace, self.indentstring ...	[ "def", "_indent_line", "(", "self", ",", "line", ",", "stripspace", "=", "''", ")", ":", "return", "re", ".", "sub", "(", "r\"^%s\"", "%", "stripspace", ",", "self", ".", "indentstring", "*", "self", ".", "indent", ",", "line", ")" ]	41.75	17.125
def _get_init_args(self, skip=4): """Get all arguments of current layer for saving the graph.""" stack = inspect.stack() if len(stack) < skip + 1: raise ValueError("The length of the inspection stack is shorter than the requested start position.") args, _, _, values = inspe...	[ "def", "_get_init_args", "(", "self", ",", "skip", "=", "4", ")", ":", "stack", "=", "inspect", ".", "stack", "(", ")", "if", "len", "(", "stack", ")", "<", "skip", "+", "1", ":", "raise", "ValueError", "(", "\"The length of the inspection stack is shorter...	37.137931	26.448276
def get_attachment(self, ticket_id, attachment_id): """ Get attachment. :param ticket_id: ID of ticket :param attachment_id: ID of attachment for obtain :returns: Attachment as dictionary with these keys: * Transaction * ContentType ...	[ "def", "get_attachment", "(", "self", ",", "ticket_id", ",", "attachment_id", ")", ":", "msg", "=", "self", ".", "__request", "(", "'ticket/{}/attachments/{}'", ".", "format", "(", "str", "(", "ticket_id", ")", ",", "str", "(", "attachment_id", ")", ")", "...	43.47191	18.955056
def compute_eigen(self, n_comps=15, sym=None, sort='decrease'): """Compute eigen decomposition of transition matrix. Parameters ---------- n_comps : `int` Number of eigenvalues/vectors to be computed, set `n_comps = 0` if you need all eigenvectors. sym : ...	[ "def", "compute_eigen", "(", "self", ",", "n_comps", "=", "15", ",", "sym", "=", "None", ",", "sort", "=", "'decrease'", ")", ":", "np", ".", "set_printoptions", "(", "precision", "=", "10", ")", "if", "self", ".", "_transitions_sym", "is", "None", ":"...	45.351852	20.518519
def show_ntp_output_node_active_server_rbridge_id_out(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") show_ntp = ET.Element("show_ntp") config = show_ntp output = ET.SubElement(show_ntp, "output") node_active_server = ET.SubElement(output...	[ "def", "show_ntp_output_node_active_server_rbridge_id_out", "(", "self", ",", "", "", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "show_ntp", "=", "ET", ".", "Element", "(", "\"show_ntp\"", ")", "config", "=", "show_ntp",...	42.923077	16.230769
def load_config(self, config): """Load outdated parameter in the global section of the configuration file.""" global_section = 'global' if (hasattr(config, 'has_section') and config.has_section(global_section)): self.args.disable_check_update = config.get_value(globa...	[ "def", "load_config", "(", "self", ",", "config", ")", ":", "global_section", "=", "'global'", "if", "(", "hasattr", "(", "config", ",", "'has_section'", ")", "and", "config", ".", "has_section", "(", "global_section", ")", ")", ":", "self", ".", "args", ...	42.833333	25.833333
def estimate_optim(data, testfile, ipyclient): """ Estimate a reasonable optim value by grabbing a chunk of sequences, decompressing and counting them, to estimate the full file size. """ ## count the len of one file and assume all others are similar len insize = os.path.getsize(testfile) ...	[ "def", "estimate_optim", "(", "data", ",", "testfile", ",", "ipyclient", ")", ":", "## count the len of one file and assume all others are similar len", "insize", "=", "os", ".", "path", ".", "getsize", "(", "testfile", ")", "tmp_file_name", "=", "os", ".", "path", ...	37.833333	19.133333
def save_data(self,session, exp_id, content): '''save data will obtain the current subid from the session, and save it depending on the database type.''' from expfactory.database.models import ( Participant, Result ) subid = session.get('subid') bot.info('Saving data for subi...	[ "def", "save_data", "(", "self", ",", "session", ",", "exp_id", ",", "content", ")", ":", "from", "expfactory", ".", "database", ".", "models", "import", "(", "Participant", ",", "Result", ")", "subid", "=", "session", ".", "get", "(", "'subid'", ")", ...	34.833333	18.633333
def connect(self): """ Starts up an authentication session for the client using cookie authentication if necessary. """ if self.r_session: self.session_logout() if self.admin_party: self._use_iam = False self.r_session = ClientSession(...	[ "def", "connect", "(", "self", ")", ":", "if", "self", ".", "r_session", ":", "self", ".", "session_logout", "(", ")", "if", "self", ".", "admin_party", ":", "self", ".", "_use_iam", "=", "False", "self", ".", "r_session", "=", "ClientSession", "(", "t...	34.12	14.72
def factory(self, data, manager=None): """Factory func for filters. data - policy config for filters manager - resource type manager (ec2, s3, etc) """ # Make the syntax a little nicer for common cases. if isinstance(data, dict) and len(data) == 1 and 'type' not in data...	[ "def", "factory", "(", "self", ",", "data", ",", "manager", "=", "None", ")", ":", "# Make the syntax a little nicer for common cases.", "if", "isinstance", "(", "data", ",", "dict", ")", "and", "len", "(", "data", ")", "==", "1", "and", "'type'", "not", "...	36.545455	10.212121
def add_done_callback(self, fn): """Adds a callback to be completed once future is done :parm fn: A callable that takes no arguments. Note that is different than concurrent.futures.Future.add_done_callback that requires a single argument for the future. """ # The...	[ "def", "add_done_callback", "(", "self", ",", "fn", ")", ":", "# The done callback for concurrent.futures.Future will always pass a", "# the future in as the only argument. So we need to create the", "# proper signature wrapper that will invoke the callback provided.", "def", "done_callback"...	49.923077	20.461538
def event_return(events): ''' Send the events to a mattermost room. :param events: List of events :return: Boolean if messages were sent successfully. ''' _options = _get_options() api_url = _options.get('api_url') channel = _options.get('channel') username = _optio...	[ "def", "event_return", "(", "events", ")", ":", "_options", "=", "_get_options", "(", ")", "api_url", "=", "_options", ".", "get", "(", "'api_url'", ")", "channel", "=", "_options", ".", "get", "(", "'channel'", ")", "username", "=", "_options", ".", "ge...	30	15.466667
def get_average_of_timeseries( image, idx=None ): """Average the timeseries into a dimension-1 image. image: input time series image idx: indices over which to average """ imagedim = image.dimension if idx is None: idx = range( image.shape[ imagedim - 1 ] ) i0 = utils.slice_image( i...	[ "def", "get_average_of_timeseries", "(", "image", ",", "idx", "=", "None", ")", ":", "imagedim", "=", "image", ".", "dimension", "if", "idx", "is", "None", ":", "idx", "=", "range", "(", "image", ".", "shape", "[", "imagedim", "-", "1", "]", ")", "i0...	38.153846	14.923077
def main(self): """Search and sieve query names.""" # TODO: Break up, too complex primary_bool = True no_records = True nsearch = 1 search_terms = self.terms original_names = [] while True: if primary_bool: self.logger.info('Sea...	[ "def", "main", "(", "self", ")", ":", "# TODO: Break up, too complex", "primary_bool", "=", "True", "no_records", "=", "True", "nsearch", "=", "1", "search_terms", "=", "self", ".", "terms", "original_names", "=", "[", "]", "while", "True", ":", "if", "prima...	39.630435	13.73913
def create_translated_fields_serializer(shared_model, meta=None, related_name=None, **fields): """ Create a Rest Framework serializer class for a translated fields model. :param shared_model: The shared model. :type shared_model: :class:`parler.models.TranslatableModel` """ if not related_name:...	[ "def", "create_translated_fields_serializer", "(", "shared_model", ",", "meta", "=", "None", ",", "related_name", "=", "None", ",", "", "", "fields", ")", ":", "if", "not", "related_name", ":", "translated_model", "=", "shared_model", ".", "_parler_meta", ".",...	36.6	24.2
def calc_avgstrlen_pathstextnodes(pars_tnodes, dbg=False): """In the effort of not using external libraries (like scipy, numpy, etc), I've written some harmless code for basic statistical calculations """ ttl = 0 for _, tnodes in pars_tnodes: ttl += tnodes[3] # index #3 holds th...	[ "def", "calc_avgstrlen_pathstextnodes", "(", "pars_tnodes", ",", "dbg", "=", "False", ")", ":", "ttl", "=", "0", "for", "_", ",", "tnodes", "in", "pars_tnodes", ":", "ttl", "+=", "tnodes", "[", "3", "]", "# index #3 holds the avg strlen\r", "crd", "=", "len"...	33.142857	17.928571
def N(u,i,p,knots): """Compute Spline Basis Evaluates the spline basis of order p defined by knots at knot i and point u. """ if p == 0: if knots[i] < u and u <=knots[i+1]: return 1.0 else: return 0.0 else: try: k = (( float((u-kn...	[ "def", "N", "(", "u", ",", "i", ",", "p", ",", "knots", ")", ":", "if", "p", "==", "0", ":", "if", "knots", "[", "i", "]", "<", "u", "and", "u", "<=", "knots", "[", "i", "+", "1", "]", ":", "return", "1.0", "else", ":", "return", "0.0", ...	28.434783	17.826087
def input_chat(self): """ This :tl:`InputPeer` is the input version of the chat where the message was sent. Similarly to `input_sender`, this doesn't have things like username or similar, but still useful in some cases. Note that this might not be available if the library doesn'...	[ "def", "input_chat", "(", "self", ")", ":", "if", "self", ".", "_input_chat", "is", "None", "and", "self", ".", "_chat_peer", ":", "try", ":", "self", ".", "_input_chat", "=", "self", ".", "_client", ".", "_entity_cache", "[", "self", ".", "_chat_peer", ...	37.3125	21.4375
def _known_stale(self): """ The commit is known to be from a file (and therefore stale) if a SHA is supplied by git archive and doesn't match the parsed commit. """ if self._output_from_file() is None: commit = None else: commit = self.commit ...	[ "def", "_known_stale", "(", "self", ")", ":", "if", "self", ".", "_output_from_file", "(", ")", "is", "None", ":", "commit", "=", "None", "else", ":", "commit", "=", "self", ".", "commit", "known_stale", "=", "(", "self", ".", "archive_commit", "is", "...	37.6	17.6
def write_chisq(page, injList, grbtag): """ Write injection chisq plots to markup.page object page """ if injList: th = ['']+injList + ['OFFSOURCE'] else: th= ['','OFFSOURCE'] injList = ['OFFSOURCE'] td = [] plots = ['bank_veto','auto_veto','chi_square', 'mchir...	[ "def", "write_chisq", "(", "page", ",", "injList", ",", "grbtag", ")", ":", "if", "injList", ":", "th", "=", "[", "''", "]", "+", "injList", "+", "[", "'OFFSOURCE'", "]", "else", ":", "th", "=", "[", "''", ",", "'OFFSOURCE'", "]", "injList", "=", ...	26.0625	20.8125
def sandbox(cls, path): '''Ensures path exists before yielding, cleans up after''' # Ensure the path exists and is clean try: os.makedirs(path) logger.debug('Making %s' % path) except OSError: if not os.path.isdir(path): raise f...	[ "def", "sandbox", "(", "cls", ",", "path", ")", ":", "# Ensure the path exists and is clean", "try", ":", "os", ".", "makedirs", "(", "path", ")", "logger", ".", "debug", "(", "'Making %s'", "%", "path", ")", "except", "OSError", ":", "if", "not", "os", ...	30.5625	17.8125
def cursor_up(self, stats): """Set the cursor to position N-1 in the list.""" if 0 <= self.cursor_position - 1: self.cursor_position -= 1 else: if self._current_page - 1 < 0 : self._current_page = self._page_max - 1 self.cursor_position = (...	[ "def", "cursor_up", "(", "self", ",", "stats", ")", ":", "if", "0", "<=", "self", ".", "cursor_position", "-", "1", ":", "self", ".", "cursor_position", "-=", "1", "else", ":", "if", "self", ".", "_current_page", "-", "1", "<", "0", ":", "self", "....	42.818182	13.454545
def list_images(profile, location_id=None, **libcloud_kwargs): ''' Return a list of images for this cloud :param profile: The profile key :type profile: ``str`` :param location_id: The location key, from list_locations :type location_id: ``str`` :param libcloud_kwargs: Extra arguments f...	[ "def", "list_images", "(", "profile", ",", "location_id", "=", "None", ",", "", "", "libcloud_kwargs", ")", ":", "conn", "=", "_get_driver", "(", "profile", "=", "profile", ")", "libcloud_kwargs", "=", "salt", ".", "utils", ".", "args", ".", "clean_kwarg...	28.354839	23.516129
def with_metaclass(meta, *bases): """ Create a base class with a metaclass. For example, if you have the metaclass >>> class Meta(type): ... pass Use this as the metaclass by doing >>> from symengine.compatibility import with_metaclass >>> class MyClass(with_metaclass(Meta, objec...	[ "def", "with_metaclass", "(", "meta", ",", "*", "bases", ")", ":", "class", "metaclass", "(", "meta", ")", ":", "__call__", "=", "type", ".", "__call__", "__init__", "=", "type", ".", "__init__", "def", "__new__", "(", "cls", ",", "name", ",", "this_ba...	25.348837	19.302326
def getone(self, key): """ Get one value matching the key, raising a KeyError if multiple values were found. """ v = self.getall(key) if not v: raise KeyError('Key not found: %r' % key) if len(v) > 1: raise KeyError('Multiple values match %...	[ "def", "getone", "(", "self", ",", "key", ")", ":", "v", "=", "self", ".", "getall", "(", "key", ")", "if", "not", "v", ":", "raise", "KeyError", "(", "'Key not found: %r'", "%", "key", ")", "if", "len", "(", "v", ")", ">", "1", ":", "raise", "...	31.636364	16.181818
def diff_node_cache(prov_dir, node, new_data, opts): ''' Check new node data against current cache. If data differ, fire an event which consists of the new node data. This function will only run if configured to do so in the main Salt Cloud configuration file (normally /etc/salt/cloud). .. cod...	[ "def", "diff_node_cache", "(", "prov_dir", ",", "node", ",", "new_data", ",", "opts", ")", ":", "if", "'diff_cache_events'", "not", "in", "opts", "or", "not", "opts", "[", "'diff_cache_events'", "]", ":", "return", "if", "node", "is", "None", ":", "return"...	32.306452	22.145161
def _provision_network(self, port_id, net_uuid, network_type, physical_network, segmentation_id): """Provision the network with the received information.""" LOG.info("Provisioning network %s", net_uuid) vswitch_name = self._get_vswitch_name(network_type, physical_netw...	[ "def", "_provision_network", "(", "self", ",", "port_id", ",", "net_uuid", ",", "network_type", ",", "physical_network", ",", "segmentation_id", ")", ":", "LOG", ".", "info", "(", "\"Provisioning network %s\"", ",", "net_uuid", ")", "vswitch_name", "=", "self", ...	45.333333	15.5
def find_exception_by_code(code): """Find name of exception by WebDriver defined error code. Args: code(str): Error code defined in protocol. Returns: The error name defined in protocol. """ errorName = None for error in WebDriverError: if error.value.code == code: ...	[ "def", "find_exception_by_code", "(", "code", ")", ":", "errorName", "=", "None", "for", "error", "in", "WebDriverError", ":", "if", "error", ".", "value", ".", "code", "==", "code", ":", "errorName", "=", "error", "break", "return", "errorName" ]	24.666667	16.333333
def add_sequence(self, words): """Add each of the tuple words[i:i+n], using a sliding window. Prefix some copies of the empty word, '', to make the start work.""" n = self.n words = ['',] * (n-1) + words for i in range(len(words)-n): self.add(tuple(words[i:i+n]))	[ "def", "add_sequence", "(", "self", ",", "words", ")", ":", "n", "=", "self", ".", "n", "words", "=", "[", "''", ",", "]", "*", "(", "n", "-", "1", ")", "+", "words", "for", "i", "in", "range", "(", "len", "(", "words", ")", "-", "n", ")", ...	44.142857	5.571429
def __get_is_revertible(self): """Return a boolean representing whether this Action is revertible or not""" # If it was already reverted if self.reverted: return False errors = [] inst = self.timemachine if inst.fields != inst.presently.fiel...	[ "def", "__get_is_revertible", "(", "self", ")", ":", "# If it was already reverted", "if", "self", ".", "reverted", ":", "return", "False", "errors", "=", "[", "]", "inst", "=", "self", ".", "timemachine", "if", "inst", ".", "fields", "!=", "inst", ".", "p...	42.661972	16.309859
def infer_id(self, ident, diagnostic=None): """ Infer type from an ID! - check if ID is declarated in the scope - if no ID is polymorphic type """ # check if ID is declared #defined = self.type_node.get_by_symbol_name(ident) defined = self.infer_node.scope...	[ "def", "infer_id", "(", "self", ",", "ident", ",", "diagnostic", "=", "None", ")", ":", "# check if ID is declared", "#defined = self.type_node.get_by_symbol_name(ident)", "defined", "=", "self", ".", "infer_node", ".", "scope_node", ".", "get_by_symbol_name", "(", "i...	35.473684	11.052632
def sample_hidden_from_visible(self, visible): """Sample the hidden units from the visible units. This is the Positive phase of the Contrastive Divergence algorithm. :param visible: activations of the visible units :return: tuple(hidden probabilities, hidden binary states) """ ...	[ "def", "sample_hidden_from_visible", "(", "self", ",", "visible", ")", ":", "hprobs", "=", "tf", ".", "nn", ".", "sigmoid", "(", "tf", ".", "add", "(", "tf", ".", "matmul", "(", "visible", ",", "self", ".", "W", ")", ",", "self", ".", "bh_", ")", ...	39.75	22.333333
def filter(self, record): """If request_id is set in flask.g, add it to log record.""" if g and hasattr(g, 'request_id'): record.request_id = g.request_id return True	[ "def", "filter", "(", "self", ",", "record", ")", ":", "if", "g", "and", "hasattr", "(", "g", ",", "'request_id'", ")", ":", "record", ".", "request_id", "=", "g", ".", "request_id", "return", "True" ]	39.6	8.4
def _update_table(data): """Add new jobs to the priority table and update the build system if required. data - it is a list of dictionaries that describe a job type returns the number of new, failed and updated jobs """ jp_index, priority, expiration_date = _initialize_values() total_jobs = le...	[ "def", "_update_table", "(", "data", ")", ":", "jp_index", ",", "priority", ",", "expiration_date", "=", "_initialize_values", "(", ")", "total_jobs", "=", "len", "(", "data", ")", "new_jobs", ",", "failed_changes", ",", "updated_jobs", "=", "0", ",", "0", ...	44.436364	21.872727
def get_atlas_summary_df(self): """Create a single data frame which summarizes all genes per row. Returns: DataFrame: Pandas DataFrame of the results """ all_info = [] for g in self.reference_gempro.genes_with_a_representative_sequence: info = {} ...	[ "def", "get_atlas_summary_df", "(", "self", ")", ":", "all_info", "=", "[", "]", "for", "g", "in", "self", ".", "reference_gempro", ".", "genes_with_a_representative_sequence", ":", "info", "=", "{", "}", "info", "[", "'Gene_ID'", "]", "=", "g", ".", "id",...	53.818182	28.766234
def render(self): """Runs the render until thread flag is set. Returns ------- self """ while not self._stop_spinner.is_set(): self._render_frame() time.sleep(0.001 * self._interval) return self	[ "def", "render", "(", "self", ")", ":", "while", "not", "self", ".", "_stop_spinner", ".", "is_set", "(", ")", ":", "self", ".", "_render_frame", "(", ")", "time", ".", "sleep", "(", "0.001", "*", "self", ".", "_interval", ")", "return", "self" ]	24.090909	16.545455
def run(self): '''Define the job of each process to run. ''' if self.verbose: pbar = tqdm(total=100) while True: task_remain = self._task_queue.qsize() task_finished = int((float(self.total_task - task_remain) / float(s...	[ "def", "run", "(", "self", ")", ":", "if", "self", ".", "verbose", ":", "pbar", "=", "tqdm", "(", "total", "=", "100", ")", "while", "True", ":", "task_remain", "=", "self", ".", "_task_queue", ".", "qsize", "(", ")", "task_finished", "=", "int", "...	41.941176	17.235294
def raise_exception_if_baseline_file_is_unstaged(filename): """We want to make sure that if there are changes to the baseline file, they will be included in the commit. This way, we can keep our baselines up-to-date. :raises: ValueError """ try: files_changed_but_not_staged = subprocess...	[ "def", "raise_exception_if_baseline_file_is_unstaged", "(", "filename", ")", ":", "try", ":", "files_changed_but_not_staged", "=", "subprocess", ".", "check_output", "(", "[", "'git'", ",", "'diff'", ",", "'--name-only'", ",", "]", ",", ")", ".", "split", "(", "...	28.965517	19.862069
def Chen_Edelstein(m, x, D, rhol, rhog, mul, mug, kl, Cpl, Hvap, sigma, dPsat, Te): r'''Calculates heat transfer coefficient for film boiling of saturated fluid in any orientation of flow. Correlation is developed in [1]_ and [2]_, and reviewed in [3]_. This model is one of the most...	[ "def", "Chen_Edelstein", "(", "m", ",", "x", ",", "D", ",", "rhol", ",", "rhog", ",", "mul", ",", "mug", ",", "kl", ",", "Cpl", ",", "Hvap", ",", "sigma", ",", "dPsat", ",", "Te", ")", ":", "G", "=", "m", "/", "(", "pi", "/", "4", "*", "D...	35.280374	23.616822
def load(data_path): """ Extract data from provided file and return it as a string. """ with open(data_path, "r") as data_file: raw_data = data_file.read() data_file.close() return raw_data	[ "def", "load", "(", "data_path", ")", ":", "with", "open", "(", "data_path", ",", "\"r\"", ")", "as", "data_file", ":", "raw_data", "=", "data_file", ".", "read", "(", ")", "data_file", ".", "close", "(", ")", "return", "raw_data" ]	26.888889	14
def _check_std(self, paths, cmd_pieces): """ Run `cmd` as a check on `paths`. """ cmd_pieces.extend(paths) process = Popen(cmd_pieces, stdout=PIPE, stderr=PIPE) out, err = process.communicate() lines = out.strip().splitlines() + err.strip().splitlines() re...	[ "def", "_check_std", "(", "self", ",", "paths", ",", "cmd_pieces", ")", ":", "cmd_pieces", ".", "extend", "(", "paths", ")", "process", "=", "Popen", "(", "cmd_pieces", ",", "stdout", "=", "PIPE", ",", "stderr", "=", "PIPE", ")", "out", ",", "err", "...	36.172414	12.862069
def _load_plain_yaml(cls, _yaml: YamlDocument) -> Any: """ Will just load the yaml without executing any extensions. You will get the plain dictionary without augmentation. It is equivalent to just perform `yaml.safe_load`. Besides that you can specify a stream, a file or just a string t...	[ "def", "_load_plain_yaml", "(", "cls", ",", "_yaml", ":", "YamlDocument", ")", "->", "Any", ":", "if", "Validator", ".", "is_stream", "(", "yaml_", "=", "_yaml", ")", ":", "return", "yaml", ".", "safe_load", "(", "_yaml", ")", "if", "Validator", ".", "...	42.857143	22.857143
def info_gain_nominal(x, y, separate_max): """ Function calculates information gain for discrete features. If feature is continuous it is firstly discretized. x: numpy array - numerical or discrete feature y: numpy array - labels ft: string - feature type ("c" - continuous, "d" - discrete) spli...	[ "def", "info_gain_nominal", "(", "x", ",", "y", ",", "separate_max", ")", ":", "x_vals", "=", "np", ".", "unique", "(", "x", ")", "# unique values", "if", "len", "(", "x_vals", ")", "<", "3", ":", "# if there is just one unique value", "return", "None", "y...	47.363636	27.227273
def start_drag_opperation(self, evt): "Event handler for drag&drop functionality" # get the control ctrl = self.menu_ctrl_map[evt.GetToolId()] # create our own data format and use it in a custom data object ldata = wx.CustomDataObject("gui") ldata.SetData(ctrl._meta...	[ "def", "start_drag_opperation", "(", "self", ",", "evt", ")", ":", "# get the control", "ctrl", "=", "self", ".", "menu_ctrl_map", "[", "evt", ".", "GetToolId", "(", ")", "]", "# create our own data format and use it in a custom data object", "ldata", "=", "wx", "."...	35.774194	17.258065
def _process_loaded_object(self, path): """process the :paramref:`path`. :param str path: the path to load an svg from """ file_name = os.path.basename(path) name = os.path.splitext(file_name)[0] with open(path) as file: string = file.read() self....	[ "def", "_process_loaded_object", "(", "self", ",", "path", ")", ":", "file_name", "=", "os", ".", "path", ".", "basename", "(", "path", ")", "name", "=", "os", ".", "path", ".", "splitext", "(", "file_name", ")", "[", "0", "]", "with", "open", "(", ...	35.9	10.2
def get_field_key(self, key, using_name=True): """Given a field key or name, return it's field key. """ try: if using_name: return self.f_name[key].key else: return self.f[key].key except KeyError: raise ValueError("'%s'...	[ "def", "get_field_key", "(", "self", ",", "key", ",", "using_name", "=", "True", ")", ":", "try", ":", "if", "using_name", ":", "return", "self", ".", "f_name", "[", "key", "]", ".", "key", "else", ":", "return", "self", ".", "f", "[", "key", "]", ...	33.4	10.9
def encode(self): """This method encodes the data into a binary string using the appropriate algorithm specified by the mode. """ if self.mode == tables.modes['alphanumeric']: encoded = self.encode_alphanumeric() elif self.mode == tables.modes['numeric']: ...	[ "def", "encode", "(", "self", ")", ":", "if", "self", ".", "mode", "==", "tables", ".", "modes", "[", "'alphanumeric'", "]", ":", "encoded", "=", "self", ".", "encode_alphanumeric", "(", ")", "elif", "self", ".", "mode", "==", "tables", ".", "modes", ...	41.923077	8.461538
def p_unit_list(self, p): """ unit_list : unit_list unit \| unit """ if isinstance(p[1], list): if len(p) >= 3: if isinstance(p[2], list): p[1].extend(p[2]) else: ...	[ "def", "p_unit_list", "(", "self", ",", "p", ")", ":", "if", "isinstance", "(", "p", "[", "1", "]", ",", "list", ")", ":", "if", "len", "(", "p", ")", ">=", "3", ":", "if", "isinstance", "(", "p", "[", "2", "]", ",", "list", ")", ":", "p", ...	29.769231	9.769231
def make_synthetic(self, srd=0, v_repl_seismic=2000, v_repl_log=2000, f=50, dt=0.001): """ Early hack. Use with extreme caution. Hands-free. There'll be a more granualr version in ...	[ "def", "make_synthetic", "(", "self", ",", "srd", "=", "0", ",", "v_repl_seismic", "=", "2000", ",", "v_repl_log", "=", "2000", ",", "f", "=", "50", ",", "dt", "=", "0.001", ")", ":", "kb", "=", "getattr", "(", "self", ".", "location", ",", "'kb'",...	30.192982	18.894737
def get_overs_summary(self, match_key): """ Calling Overs Summary API Arg: match_key: key of the match Return: json data """ overs_summary_url = self.api_path + "match/" + match_key + "/overs_summary/" response = self.get_response(overs_summ...	[ "def", "get_overs_summary", "(", "self", ",", "match_key", ")", ":", "overs_summary_url", "=", "self", ".", "api_path", "+", "\"match/\"", "+", "match_key", "+", "\"/overs_summary/\"", "response", "=", "self", ".", "get_response", "(", "overs_summary_url", ")", ...	28.416667	16.583333
def page(self, end_date=values.unset, event_type=values.unset, minutes=values.unset, reservation_sid=values.unset, start_date=values.unset, task_queue_sid=values.unset, task_sid=values.unset, worker_sid=values.unset, workflow_sid=values.unset, task_channel=values.unse...	[ "def", "page", "(", "self", ",", "end_date", "=", "values", ".", "unset", ",", "event_type", "=", "values", ".", "unset", ",", "minutes", "=", "values", ".", "unset", ",", "reservation_sid", "=", "values", ".", "unset", ",", "start_date", "=", "values", ...	48.962264	23.415094
def postURL(self, url, headers, body): """ Implement post using a get call """ new_url = url if body is not None: new_url = FileSea.convert_body(url, body) return self.getURL(new_url, headers)	[ "def", "postURL", "(", "self", ",", "url", ",", "headers", ",", "body", ")", ":", "new_url", "=", "url", "if", "body", "is", "not", "None", ":", "new_url", "=", "FileSea", ".", "convert_body", "(", "url", ",", "body", ")", "return", "self", ".", "g...	30.625	6.375
def link_docstring(modules, docstring:str, overwrite:bool=False)->str: "Search `docstring` for backticks and attempt to link those functions to respective documentation." mods = listify(modules) for mod in mods: _modvars.update(mod.__dict__) # concat all module definitions return re.sub(BT_REGEX, replac...	[ "def", "link_docstring", "(", "modules", ",", "docstring", ":", "str", ",", "overwrite", ":", "bool", "=", "False", ")", "->", "str", ":", "mods", "=", "listify", "(", "modules", ")", "for", "mod", "in", "mods", ":", "_modvars", ".", "update", "(", "...	66.8	32
def write_config(configfile, content): """ Write dict to a file in yaml format """ with open(configfile, 'w+') as ymlfile: yaml.dump( content, ymlfile, default_flow_style=False, )	[ "def", "write_config", "(", "configfile", ",", "content", ")", ":", "with", "open", "(", "configfile", ",", "'w+'", ")", "as", "ymlfile", ":", "yaml", ".", "dump", "(", "content", ",", "ymlfile", ",", "default_flow_style", "=", "False", ",", ")" ]	23.8	10.2
def get_comics(self, args, *kwargs): """ Returns a full ComicDataWrapper object for this creator. /creators/{creatorId}/comics :returns: ComicDataWrapper -- A new request to API. Contains full results set. """ from .comic import Comic, ComicDataWrappe...	[ "def", "get_comics", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "from", ".", "comic", "import", "Comic", ",", "ComicDataWrapper", "return", "self", ".", "get_related_resource", "(", "Comic", ",", "ComicDataWrapper", ",", "args", ",",...	39.2	19

def cmd_set_homepos(self, args): '''called when user selects "Set Home" on map''' (lat, lon) = (self.click_position[0], self.click_position[1]) print("Setting home to: ", lat, lon) self.master.mav.command_int_send( self.settings.target_system, self.settings.target_component, ...

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def next(self): """ Return all files in folder. """ # get depth of starting root directory base_depth = self.__root.count(os.path.sep) # walk files and folders for root, subFolders, files in os.walk(self.__root): # apply folder filter if ...

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def page(request): """ Adds the current page to the template context and runs its ``set_helper`` method. This was previously part of ``PageMiddleware``, but moved to a context processor so that we could assign these template context variables without the middleware depending on Django's ``Templa...

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42.411765

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def send_work(self): '''Sends the query to the actor for it to start executing the work. It is possible to execute once again a future that has finished if necessary (overwriting the results), but only one execution at a time. ''' if self.__set_running(): ...

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43.411765

24.117647

def str_repeat(arr, repeats): """ Duplicate each string in the Series or Index. Parameters ---------- repeats : int or sequence of int Same value for all (int) or different value per (sequence). Returns ------- Series or Index of object Series or Index of repeated strin...

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def _pretty_dump(self, label, data): """Print modbus/TCP frame ('[header]body') or RTU ('body[CRC]') on stdout :param label: modbus function code :type label: str :param data: modbus frame :type data: str (Python2) or class bytes (Python3) """ # split dat...

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31.821429

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def reset(self): """Reset stacks and instruction pointer.""" self.data_stack = stack.Stack() self.return_stack = stack.Stack() self.instruction_pointer = 0 return self

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33.666667

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def compute_etag(self) -> Optional[str]: """Sets the ``Etag`` header based on static url version. This allows efficient ``If-None-Match`` checks against cached versions, and sends the correct ``Etag`` for a partial response (i.e. the same ``Etag`` as the full file). .. versiona...

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38.285714

15.928571

def _fw_rule_create(self, drvr_name, data, cache): """Firewall Rule create routine. This function updates its local cache with rule parameters. It checks if local cache has information about the Policy associated with the rule. If not, it means a restart has happened. It retriev...

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def temporary_chdir(new_dir): """ Like os.chdir(), but always restores the old working directory For example, code like this... old_curdir = os.getcwd() os.chdir('stuff') do_some_stuff() os.chdir(old_curdir) ...leaves the current working directory unchanged if do_some_...

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22.8125

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def create_new_dispatch(self, dispatch): """ Create a new dispatch :param dispatch: is the new dispatch that the client wants to create """ self._validate_uuid(dispatch.dispatch_id) # Create new dispatch url = "/notification/v1/dispatch" post_resp...

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def _get_close_args(self, data): """ this functions extracts the code, reason from the close body if they exists, and if the self.on_close except three arguments """ # if the on_close callback is "old", just return empty list if sys.version_info < (3, 0): if not self.on_close...

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def is_annual(self): """Check if an analysis period is annual.""" if (self.st_month, self.st_day, self.st_hour, self.end_month, self.end_day, self.end_hour) == (1, 1, 0, 12, 31, 23): return True else: return False

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def add_binary_content_type(application, content_type, pack, unpack): """ Add handler for a binary content type. :param tornado.web.Application application: the application to modify :param str content_type: the content type to add :param pack: function that packs a dictionary to a byte string. ...

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40.571429

19.285714

def makeEndOfPrdvFuncCond(self): ''' Construct the end-of-period value function conditional on next period's state. NOTE: It might be possible to eliminate this method and replace it with ConsIndShockSolver.makeEndOfPrdvFunc, but the self.X_cond variables must be renamed. ...

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49.535714

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def update(self, **kwargs): ''' validates the given data against this object's rules and then updates ''' redis = type(self).get_redis() errors = ValidationErrors() for fieldname, field in self.proxy: if not field.fillable: continue given...

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23.935484

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def init(deb1, deb2=False): """Initialize DEBUG and DEBUGALL. Allows other modules to set DEBUG and DEBUGALL, so their call to dprint or dprintx generate output. Args: deb1 (bool): value of DEBUG to set deb2 (bool): optional - value of DEBUGALL to set, defaults to ...

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29.6875

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def __get_labels(self): """ Read the label file of the documents and extract all the labels Returns: An array of labels.Label objects """ labels = [] try: with self.fs.open(self.fs.join(self.path, self.LABEL_FILE), ...

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34.631579

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def parseconf (self, filename): """Parse clamav configuration from given file.""" with open(filename) as fd: # yet another config format, sigh for line in fd: line = line.strip() if not line or line.startswith("#"): # ignore emp...

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39.071429

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def ifusergroup(parser, token): """ Check to see if the currently logged in user belongs to a specific group. Requires the Django authentication contrib app and middleware. Usage: {% ifusergroup Admins %} ... {% endifusergroup %}, or {% ifusergroup Admins Clients Sellers %} ... {% else %} ... {%...

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35.2

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def create_checksum_object_from_iterator( itr, algorithm=d1_common.const.DEFAULT_CHECKSUM_ALGORITHM ): """Calculate the checksum of an iterator. Args: itr: iterable Object which supports the iterator protocol. algorithm: str Checksum algorithm, ``MD5`` or ``SHA1`` / ``SHA-1``. ...

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28.2

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def subset_sum(x, R): """Subsetsum :param x: table of non negative values :param R: target value :returns bool: True if a subset of x sums to R :complexity: O(n*R) """ b = [False] * (R + 1) b[0] = True for xi in x: for s in range(R, xi - 1, -1): b[s] |= b[s - xi]...

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23.071429

14.571429

def delete_certificate(ctx, slot, management_key, pin): """ Delete a certificate. Delete a certificate from a slot on the YubiKey. """ controller = ctx.obj['controller'] _ensure_authenticated(ctx, controller, pin, management_key) controller.delete_certificate(slot)

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31.777778

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def print_diskinfo(diskinfo, widelayout, incolor): ''' Disk information output function. ''' sep = ' ' if opts.relative: import math base = max([ disk.ocap for disk in diskinfo ]) for disk in diskinfo: if disk.ismntd: ico = _diskico else: ico = _unmnico...

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34

19.52381

def read_config(conf_dir=DEFAULT_CONFIG_DIR): "Find and read config file for a directory, return None if not found." conf_path = os.path.expanduser(conf_dir) if not os.path.exists(conf_path): # only throw if not default if conf_dir != DEFAULT_CONFIG_DIR: raise IOError("Config di...

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41.9

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def action_verify_checksum(self, ids): """Inactivate users.""" try: count = 0 for file_id in ids: f = FileInstance.query.filter_by( id=uuid.UUID(file_id)).one_or_none() if f is None: raise ValueError(_("Canno...

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39.684211

14.789474

def readLipd(usr_path=""): """ Read LiPD file(s). Enter a file path, directory path, or leave args blank to trigger gui. :param str usr_path: Path to file / directory (optional) :return dict _d: Metadata """ global cwd, settings, files if settings["verbose"]: __disclaimer(opt="u...

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28.388889

16.611111

def get(self,key,default=None): """Get a value from the dictionary. Args: key (str): The dictionary key. default (any): The default to return if the key is not in the dictionary. Defaults to None. Returns: str or any: The dictionary value or ...

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27.444444

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def start(self): ''' doesn't work''' thread = threading.Thread(target=reactor.run) thread.start()

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29.5

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def hexadecimal(token): """ Convert a strip of hexadecimal numbers into binary data. @type token: str @param token: String to parse. @rtype: str @return: Parsed string value. """ token = ''.join([ c for c in token if c.isalnum() ]) if len(token...

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28.9

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def get_gpg_home( appname, config_dir=None ): """ Get the GPG keyring directory for a particular application. Return the path. """ assert is_valid_appname(appname) config_dir = get_config_dir( config_dir ) path = os.path.join( config_dir, "gpgkeys", appname ) return path

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def add_member(self, user, state=MembershipState.ACTIVE): """Invite a user to a group. :param user: User to be added as a group member. :param state: MembershipState. Default: MembershipState.ACTIVE. :returns: Membership object or None. """ return Membership.create(self,...

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def touch_project(): """ Touches the project to trigger refreshing its cauldron.json state. """ r = Response() project = cd.project.get_internal_project() if project: project.refresh() else: r.fail( code='NO_PROJECT', message='No open project to refre...

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def max_width(self): """Get maximum width of progress bar :rtype: int :returns: Maximum column width of progress bar """ value, unit = float(self._width_str[:-1]), self._width_str[-1] ensure(unit in ["c", "%"], ValueError, "Width unit must be either 'c' o...

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def sleep(duration): ''' Sleeps for duration seconds in increments of 0.5 seconds. Use this so that the sleep can be interrupted by thread_raise(). ''' import time start = time.time() while True: elapsed = time.time() - start if elapsed >= duration: break ...

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def _FormatTypeCheck(type_): """Pretty format of type check.""" if isinstance(type_, tuple): items = [_FormatTypeCheck(t) for t in type_] return "(%s)" % ", ".join(items) elif hasattr(type_, "__name__"): return type_.__name__ else: return repr(type_)

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def printParams(paramDictionary, all=False, log=None): """ Print nicely the parameters from the dictionary. """ if log is not None: def output(msg): log.info(msg) else: def output(msg): print(msg) if not paramDictionary: output('No parameters wer...

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def add(self, operator, *args): """Adds a proximal operator to the list of operators""" if isinstance(operator, str): op = getattr(proxops, operator)(*args) elif isinstance(operator, proxops.ProximalOperatorBaseClass): op = operator else: raise ValueE...

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def xml_parser(self, scode, *args): """ args[0]: xpath args[1]: text / html / xml """ allow_method = ('text', 'html', 'xml') xpath_string, method = args assert method in allow_method, 'method allow: %s' % allow_method result = self.ensure_list( ...

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async def _default_help_command(ctx, *commands : str): """Shows this message.""" bot = ctx.bot destination = ctx.message.author if bot.pm_help else ctx.message.channel def repl(obj): return _mentions_transforms.get(obj.group(0), '') # help by itself just lists our own commands. if len(...

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def get_preservation_data(self): """Returns a list of Preservation data """ for obj in self.get_preservations(): info = self.get_base_info(obj) yield info

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def update_dimension(dimension,**kwargs): """ Update a dimension in the DB. Raises and exception if the dimension does not exist. The key is ALWAYS the name and the name itself is not modificable """ db_dimension = None dimension = JSONObject(dimension) try: db_dimens...

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def _list_model(self, model_cls: Type[X]) -> List[X]: """List the models in this class.""" return self.session.query(model_cls).all()

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def encode_list(data, encoding=None, errors='strict', keep=False, preserve_dict_class=False, preserve_tuples=False): ''' Encode all string values to bytes ''' rv = [] for item in data: if isinstance(item, list): item = encode_list(item, encoding, errors, keep, ...

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def read_config(self, path): """Read configuration file.""" PYVLXLOG.info('Reading config file: %s', path) try: with open(path, 'r') as filehandle: doc = yaml.safe_load(filehandle) self.test_configuration(doc, path) self.host = doc['con...

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def _indent_line(self, line, stripspace=''): """indent the given line according to the current indent level. stripspace is a string of space that will be truncated from the start of the line before indenting.""" return re.sub(r"^%s" % stripspace, self.indentstring ...

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def _get_init_args(self, skip=4): """Get all arguments of current layer for saving the graph.""" stack = inspect.stack() if len(stack) < skip + 1: raise ValueError("The length of the inspection stack is shorter than the requested start position.") args, _, _, values = inspe...

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def get_attachment(self, ticket_id, attachment_id): """ Get attachment. :param ticket_id: ID of ticket :param attachment_id: ID of attachment for obtain :returns: Attachment as dictionary with these keys: * Transaction * ContentType ...

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def compute_eigen(self, n_comps=15, sym=None, sort='decrease'): """Compute eigen decomposition of transition matrix. Parameters ---------- n_comps : `int` Number of eigenvalues/vectors to be computed, set `n_comps = 0` if you need all eigenvectors. sym : ...

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def show_ntp_output_node_active_server_rbridge_id_out(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") show_ntp = ET.Element("show_ntp") config = show_ntp output = ET.SubElement(show_ntp, "output") node_active_server = ET.SubElement(output...

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def load_config(self, config): """Load outdated parameter in the global section of the configuration file.""" global_section = 'global' if (hasattr(config, 'has_section') and config.has_section(global_section)): self.args.disable_check_update = config.get_value(globa...

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def estimate_optim(data, testfile, ipyclient): """ Estimate a reasonable optim value by grabbing a chunk of sequences, decompressing and counting them, to estimate the full file size. """ ## count the len of one file and assume all others are similar len insize = os.path.getsize(testfile) ...

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def save_data(self,session, exp_id, content): '''save data will obtain the current subid from the session, and save it depending on the database type.''' from expfactory.database.models import ( Participant, Result ) subid = session.get('subid') bot.info('Saving data for subi...

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def connect(self): """ Starts up an authentication session for the client using cookie authentication if necessary. """ if self.r_session: self.session_logout() if self.admin_party: self._use_iam = False self.r_session = ClientSession(...

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def factory(self, data, manager=None): """Factory func for filters. data - policy config for filters manager - resource type manager (ec2, s3, etc) """ # Make the syntax a little nicer for common cases. if isinstance(data, dict) and len(data) == 1 and 'type' not in data...

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def add_done_callback(self, fn): """Adds a callback to be completed once future is done :parm fn: A callable that takes no arguments. Note that is different than concurrent.futures.Future.add_done_callback that requires a single argument for the future. """ # The...

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def event_return(events): ''' Send the events to a mattermost room. :param events: List of events :return: Boolean if messages were sent successfully. ''' _options = _get_options() api_url = _options.get('api_url') channel = _options.get('channel') username = _optio...

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def get_average_of_timeseries( image, idx=None ): """Average the timeseries into a dimension-1 image. image: input time series image idx: indices over which to average """ imagedim = image.dimension if idx is None: idx = range( image.shape[ imagedim - 1 ] ) i0 = utils.slice_image( i...

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def main(self): """Search and sieve query names.""" # TODO: Break up, too complex primary_bool = True no_records = True nsearch = 1 search_terms = self.terms original_names = [] while True: if primary_bool: self.logger.info('Sea...

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def create_translated_fields_serializer(shared_model, meta=None, related_name=None, **fields): """ Create a Rest Framework serializer class for a translated fields model. :param shared_model: The shared model. :type shared_model: :class:`parler.models.TranslatableModel` """ if not related_name:...

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def calc_avgstrlen_pathstextnodes(pars_tnodes, dbg=False): """In the effort of not using external libraries (like scipy, numpy, etc), I've written some harmless code for basic statistical calculations """ ttl = 0 for _, tnodes in pars_tnodes: ttl += tnodes[3] # index #3 holds th...

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def N(u,i,p,knots): """Compute Spline Basis Evaluates the spline basis of order p defined by knots at knot i and point u. """ if p == 0: if knots[i] < u and u <=knots[i+1]: return 1.0 else: return 0.0 else: try: k = (( float((u-kn...

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def input_chat(self): """ This :tl:`InputPeer` is the input version of the chat where the message was sent. Similarly to `input_sender`, this doesn't have things like username or similar, but still useful in some cases. Note that this might not be available if the library doesn'...

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def _known_stale(self): """ The commit is known to be from a file (and therefore stale) if a SHA is supplied by git archive and doesn't match the parsed commit. """ if self._output_from_file() is None: commit = None else: commit = self.commit ...

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def write_chisq(page, injList, grbtag): """ Write injection chisq plots to markup.page object page """ if injList: th = ['']+injList + ['OFFSOURCE'] else: th= ['','OFFSOURCE'] injList = ['OFFSOURCE'] td = [] plots = ['bank_veto','auto_veto','chi_square', 'mchir...

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def sandbox(cls, path): '''Ensures path exists before yielding, cleans up after''' # Ensure the path exists and is clean try: os.makedirs(path) logger.debug('Making %s' % path) except OSError: if not os.path.isdir(path): raise f...

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def cursor_up(self, stats): """Set the cursor to position N-1 in the list.""" if 0 <= self.cursor_position - 1: self.cursor_position -= 1 else: if self._current_page - 1 < 0 : self._current_page = self._page_max - 1 self.cursor_position = (...

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def list_images(profile, location_id=None, **libcloud_kwargs): ''' Return a list of images for this cloud :param profile: The profile key :type profile: ``str`` :param location_id: The location key, from list_locations :type location_id: ``str`` :param libcloud_kwargs: Extra arguments f...

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def with_metaclass(meta, *bases): """ Create a base class with a metaclass. For example, if you have the metaclass >>> class Meta(type): ... pass Use this as the metaclass by doing >>> from symengine.compatibility import with_metaclass >>> class MyClass(with_metaclass(Meta, objec...

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def getone(self, key): """ Get one value matching the key, raising a KeyError if multiple values were found. """ v = self.getall(key) if not v: raise KeyError('Key not found: %r' % key) if len(v) > 1: raise KeyError('Multiple values match %...

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def diff_node_cache(prov_dir, node, new_data, opts): ''' Check new node data against current cache. If data differ, fire an event which consists of the new node data. This function will only run if configured to do so in the main Salt Cloud configuration file (normally /etc/salt/cloud). .. cod...

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def _provision_network(self, port_id, net_uuid, network_type, physical_network, segmentation_id): """Provision the network with the received information.""" LOG.info("Provisioning network %s", net_uuid) vswitch_name = self._get_vswitch_name(network_type, physical_netw...

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def find_exception_by_code(code): """Find name of exception by WebDriver defined error code. Args: code(str): Error code defined in protocol. Returns: The error name defined in protocol. """ errorName = None for error in WebDriverError: if error.value.code == code: ...

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def add_sequence(self, words): """Add each of the tuple words[i:i+n], using a sliding window. Prefix some copies of the empty word, '', to make the start work.""" n = self.n words = ['',] * (n-1) + words for i in range(len(words)-n): self.add(tuple(words[i:i+n]))

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44.142857

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def __get_is_revertible(self): """Return a boolean representing whether this Action is revertible or not""" # If it was already reverted if self.reverted: return False errors = [] inst = self.timemachine if inst.fields != inst.presently.fiel...

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42.661972

16.309859

def infer_id(self, ident, diagnostic=None): """ Infer type from an ID! - check if ID is declarated in the scope - if no ID is polymorphic type """ # check if ID is declared #defined = self.type_node.get_by_symbol_name(ident) defined = self.infer_node.scope...

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35.473684

11.052632

def sample_hidden_from_visible(self, visible): """Sample the hidden units from the visible units. This is the Positive phase of the Contrastive Divergence algorithm. :param visible: activations of the visible units :return: tuple(hidden probabilities, hidden binary states) """ ...

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39.75

22.333333

def filter(self, record): """If request_id is set in flask.g, add it to log record.""" if g and hasattr(g, 'request_id'): record.request_id = g.request_id return True

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39.6

8.4

def _update_table(data): """Add new jobs to the priority table and update the build system if required. data - it is a list of dictionaries that describe a job type returns the number of new, failed and updated jobs """ jp_index, priority, expiration_date = _initialize_values() total_jobs = le...

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44.436364

21.872727

def get_atlas_summary_df(self): """Create a single data frame which summarizes all genes per row. Returns: DataFrame: Pandas DataFrame of the results """ all_info = [] for g in self.reference_gempro.genes_with_a_representative_sequence: info = {} ...

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53.818182

28.766234

def render(self): """Runs the render until thread flag is set. Returns ------- self """ while not self._stop_spinner.is_set(): self._render_frame() time.sleep(0.001 * self._interval) return self

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24.090909

16.545455

def run(self): '''Define the job of each process to run. ''' if self.verbose: pbar = tqdm(total=100) while True: task_remain = self._task_queue.qsize() task_finished = int((float(self.total_task - task_remain) / float(s...

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41.941176

17.235294

def raise_exception_if_baseline_file_is_unstaged(filename): """We want to make sure that if there are changes to the baseline file, they will be included in the commit. This way, we can keep our baselines up-to-date. :raises: ValueError """ try: files_changed_but_not_staged = subprocess...

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28.965517

19.862069

def Chen_Edelstein(m, x, D, rhol, rhog, mul, mug, kl, Cpl, Hvap, sigma, dPsat, Te): r'''Calculates heat transfer coefficient for film boiling of saturated fluid in any orientation of flow. Correlation is developed in [1]_ and [2]_, and reviewed in [3]_. This model is one of the most...

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35.280374

23.616822

def load(data_path): """ Extract data from provided file and return it as a string. """ with open(data_path, "r") as data_file: raw_data = data_file.read() data_file.close() return raw_data

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26.888889

14

def _check_std(self, paths, cmd_pieces): """ Run `cmd` as a check on `paths`. """ cmd_pieces.extend(paths) process = Popen(cmd_pieces, stdout=PIPE, stderr=PIPE) out, err = process.communicate() lines = out.strip().splitlines() + err.strip().splitlines() re...

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36.172414

12.862069

def _load_plain_yaml(cls, _yaml: YamlDocument) -> Any: """ Will just load the yaml without executing any extensions. You will get the plain dictionary without augmentation. It is equivalent to just perform `yaml.safe_load`. Besides that you can specify a stream, a file or just a string t...

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42.857143

22.857143

def info_gain_nominal(x, y, separate_max): """ Function calculates information gain for discrete features. If feature is continuous it is firstly discretized. x: numpy array - numerical or discrete feature y: numpy array - labels ft: string - feature type ("c" - continuous, "d" - discrete) spli...

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47.363636

27.227273

def start_drag_opperation(self, evt): "Event handler for drag&drop functionality" # get the control ctrl = self.menu_ctrl_map[evt.GetToolId()] # create our own data format and use it in a custom data object ldata = wx.CustomDataObject("gui") ldata.SetData(ctrl._meta...

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35.774194

17.258065

def _process_loaded_object(self, path): """process the :paramref:`path`. :param str path: the path to load an svg from """ file_name = os.path.basename(path) name = os.path.splitext(file_name)[0] with open(path) as file: string = file.read() self....

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35.9

10.2

def get_field_key(self, key, using_name=True): """Given a field key or name, return it's field key. """ try: if using_name: return self.f_name[key].key else: return self.f[key].key except KeyError: raise ValueError("'%s'...

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33.4

10.9

def encode(self): """This method encodes the data into a binary string using the appropriate algorithm specified by the mode. """ if self.mode == tables.modes['alphanumeric']: encoded = self.encode_alphanumeric() elif self.mode == tables.modes['numeric']: ...

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41.923077

8.461538

def p_unit_list(self, p): """ unit_list : unit_list unit | unit """ if isinstance(p[1], list): if len(p) >= 3: if isinstance(p[2], list): p[1].extend(p[2]) else: ...

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29.769231

9.769231

def make_synthetic(self, srd=0, v_repl_seismic=2000, v_repl_log=2000, f=50, dt=0.001): """ Early hack. Use with extreme caution. Hands-free. There'll be a more granualr version in ...

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30.192982

18.894737

def get_overs_summary(self, match_key): """ Calling Overs Summary API Arg: match_key: key of the match Return: json data """ overs_summary_url = self.api_path + "match/" + match_key + "/overs_summary/" response = self.get_response(overs_summ...

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28.416667

16.583333

def page(self, end_date=values.unset, event_type=values.unset, minutes=values.unset, reservation_sid=values.unset, start_date=values.unset, task_queue_sid=values.unset, task_sid=values.unset, worker_sid=values.unset, workflow_sid=values.unset, task_channel=values.unse...

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48.962264

23.415094

def postURL(self, url, headers, body): """ Implement post using a get call """ new_url = url if body is not None: new_url = FileSea.convert_body(url, body) return self.getURL(new_url, headers)

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30.625

6.375

def link_docstring(modules, docstring:str, overwrite:bool=False)->str: "Search `docstring` for backticks and attempt to link those functions to respective documentation." mods = listify(modules) for mod in mods: _modvars.update(mod.__dict__) # concat all module definitions return re.sub(BT_REGEX, replac...

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66.8

32

def write_config(configfile, content): """ Write dict to a file in yaml format """ with open(configfile, 'w+') as ymlfile: yaml.dump( content, ymlfile, default_flow_style=False, )

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23.8

10.2

def get_comics(self, *args, **kwargs): """ Returns a full ComicDataWrapper object for this creator. /creators/{creatorId}/comics :returns: ComicDataWrapper -- A new request to API. Contains full results set. """ from .comic import Comic, ComicDataWrappe...

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39.2

19