kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def sep1(parser, separator): """Like sep but must consume at least one of parser. """ first = [parser()] def inner(): separator() return parser() return first + many(tri(inner))	[ "def", "sep1", "(", "parser", ",", "separator", ")", ":", "first", "=", "[", "parser", "(", ")", "]", "def", "inner", "(", ")", ":", "separator", "(", ")", "return", "parser", "(", ")", "return", "first", "+", "many", "(", "tri", "(", "inner", ")...	25.75	12.125
def louvain_clustering(self, X=None, res=1, method='modularity'): """Runs Louvain clustering using the vtraag implementation. Assumes that 'louvain' optional dependency is installed. Parameters ---------- res - float, optional, default 1 The resolution parameter whic...	[ "def", "louvain_clustering", "(", "self", ",", "X", "=", "None", ",", "res", "=", "1", ",", "method", "=", "'modularity'", ")", ":", "if", "X", "is", "None", ":", "X", "=", "self", ".", "adata", ".", "uns", "[", "'neighbors'", "]", "[", "'connectiv...	33.115385	19.307692
def _R2deriv(self,R,z,phi=0.,t=0.): """ NAME: _Rforce PURPOSE: evaluate the second radial derivative for this potential INPUT: R - Galactocentric cylindrical radius z - vertical height phi - azimuth t - time ...	[ "def", "_R2deriv", "(", "self", ",", "R", ",", "z", ",", "phi", "=", "0.", ",", "t", "=", "0.", ")", ":", "return", "self", ".", "_denom", "(", "R", ",", "z", ")", "*", "-", "1.5", "-", "3.", "", "R", "*", "2", "", "self", ".", "_deno...	29.411765	15.882353
def _valid_deleted_file(path): ''' Filters file path against unwanted directories and decides whether file is marked as deleted. Returns: True if file is desired deleted file, else False. Args: path: A string - path to file ''' ret = False if path.endswith(' (deleted)'): ...	[ "def", "_valid_deleted_file", "(", "path", ")", ":", "ret", "=", "False", "if", "path", ".", "endswith", "(", "' (deleted)'", ")", ":", "ret", "=", "True", "if", "re", ".", "compile", "(", "r\"\\(path inode=[0-9]+\\)$\"", ")", ".", "search", "(", "path", ...	25.05	24.45
def map_aliases_to_device_objects(self): """ A device object knows its rid, but not its alias. A portal object knows its device rids and aliases. This function adds an 'portals_aliases' key to all of the device objects so they can be sorted by alias. """...	[ "def", "map_aliases_to_device_objects", "(", "self", ")", ":", "all_devices", "=", "self", ".", "get_all_devices_in_portal", "(", ")", "for", "dev_o", "in", "all_devices", ":", "dev_o", "[", "'portals_aliases'", "]", "=", "self", ".", "get_portal_by_name", "(", ...	46.642857	19.5
def get_index_list(nside, nest, region): """ Returns the list of pixels indices for all the pixels in a region nside : HEALPix nside parameter nest : True for 'NESTED', False = 'RING' region : HEALPix region string """ tokens = parse_hpxregion(region) i...	[ "def", "get_index_list", "(", "nside", ",", "nest", ",", "region", ")", ":", "tokens", "=", "parse_hpxregion", "(", "region", ")", "if", "tokens", "[", "0", "]", "==", "'DISK'", ":", "vec", "=", "coords_to_vec", "(", "float", "(", "tokens", "[", "1", ...	44.59375	16.34375
def unregister(self, provider_class): """ Unregisters a provider from the site. """ if not issubclass(provider_class, BaseProvider): raise TypeError('%s must be a subclass of BaseProvider' % provider_class.__name__) if provider_class not in self._registered_p...	[ "def", "unregister", "(", "self", ",", "provider_class", ")", ":", "if", "not", "issubclass", "(", "provider_class", ",", "BaseProvider", ")", ":", "raise", "TypeError", "(", "'%s must be a subclass of BaseProvider'", "%", "provider_class", ".", "__name__", ")", "...	38.714286	19
def get_assign_annotation(node): """Get the type annotation of the assignment of the given node. :param node: The node to get the annotation for. :type node: astroid.nodes.Assign or astroid.nodes.AnnAssign :returns: The type annotation as a string, or None if one does not exist. :type: str or None...	[ "def", "get_assign_annotation", "(", "node", ")", ":", "annotation", "=", "None", "annotation_node", "=", "None", "try", ":", "annotation_node", "=", "node", ".", "annotation", "except", "AttributeError", ":", "# Python 2 has no support for type annotations, so use getatt...	31.2	21.28
def _call_when_changed(self, ticks, state): """ Called to fire the :attr:`when_changed` event handler; override this in descendents if additional (currently redundant) parameters need to be passed. """ method = self._when_changed() if method is None: s...	[ "def", "_call_when_changed", "(", "self", ",", "ticks", ",", "state", ")", ":", "method", "=", "self", ".", "_when_changed", "(", ")", "if", "method", "is", "None", ":", "self", ".", "when_changed", "=", "None", "else", ":", "method", "(", "ticks", ","...	34.545455	13.454545
def set_default_property_values(self, dev_class, class_prop, dev_prop): """ set_default_property_values(self, dev_class, class_prop, dev_prop) -> None Sets the default property values Parameters : - dev_class : (DeviceClass) device class object ...	[ "def", "set_default_property_values", "(", "self", ",", "dev_class", ",", "class_prop", ",", "dev_prop", ")", ":", "for", "name", "in", "class_prop", ":", "type", "=", "self", ".", "get_property_type", "(", "name", ",", "class_prop", ")", "val", "=", "self",...	42	20.153846
def write_data(self, variable_id, value): """ write values to the device """ i = 0 j = 0 while i < 10: try: self.inst.query('*IDN?') logger.info("Visa-MDO3014-Write- variable_id : %s et value : %s" %(variable_id, value)) ...	[ "def", "write_data", "(", "self", ",", "variable_id", ",", "value", ")", ":", "i", "=", "0", "j", "=", "0", "while", "i", "<", "10", ":", "try", ":", "self", ".", "inst", ".", "query", "(", "'*IDN?'", ")", "logger", ".", "info", "(", "\"Visa-MDO3...	46.131944	22.1875
def from_excel_to_ymd(excel_int): """ converts date in Microsoft Excel representation style and returns `(year, month, day)` tuple :param int excel_int: date as int (days since 1899-12-31) :return tuple(int, int, int): """ int_date = int(floor(excel_int)) int_date -= 1 if excel_int > 60 e...	[ "def", "from_excel_to_ymd", "(", "excel_int", ")", ":", "int_date", "=", "int", "(", "floor", "(", "excel_int", ")", ")", "int_date", "-=", "1", "if", "excel_int", ">", "60", "else", "0", "# jan dingerkus: There are two errors in excels own date <> int conversion.", ...	32.971429	24.514286
def constrain_opts(self, constraint_dict, options): """ Return result of constraints and options against a template """ constraints = {} for constraint in constraint_dict: if constraint != 'self': if (constraint_dict[constraint] or constraint_d...	[ "def", "constrain_opts", "(", "self", ",", "constraint_dict", ",", "options", ")", ":", "constraints", "=", "{", "}", "for", "constraint", "in", "constraint_dict", ":", "if", "constraint", "!=", "'self'", ":", "if", "(", "constraint_dict", "[", "constraint", ...	52.272727	13.272727
def _split(self, string): """Iterates over the ngrams of a string (no padding). >>> from ngram import NGram >>> n = NGram() >>> list(n._split("hamegg")) ['ham', 'ame', 'meg', 'egg'] """ for i in range(len(string) - self.N + 1): yield string[i:i + self...	[ "def", "_split", "(", "self", ",", "string", ")", ":", "for", "i", "in", "range", "(", "len", "(", "string", ")", "-", "self", ".", "N", "+", "1", ")", ":", "yield", "string", "[", "i", ":", "i", "+", "self", ".", "N", "]" ]	31.4	9.6
def undo(self): ''' Undo the last action. ''' if self.canundo(): undoable = self._undos.pop() with self._pausereceiver(): try: undoable.undo() except: self.clear() raise ...	[ "def", "undo", "(", "self", ")", ":", "if", "self", ".", "canundo", "(", ")", ":", "undoable", "=", "self", ".", "_undos", ".", "pop", "(", ")", "with", "self", ".", "_pausereceiver", "(", ")", ":", "try", ":", "undoable", ".", "undo", "(", ")", ...	31.076923	10.461538
def create_background(bg_type, fafile, outfile, genome="hg18", width=200, nr_times=10, custom_background=None): """Create background of a specific type. Parameters ---------- bg_type : str Name of background type. fafile : str Name of input FASTA file. outfile : str Na...	[ "def", "create_background", "(", "bg_type", ",", "fafile", ",", "outfile", ",", "genome", "=", "\"hg18\"", ",", "width", "=", "200", ",", "nr_times", "=", "10", ",", "custom_background", "=", "None", ")", ":", "width", "=", "int", "(", "width", ")", "c...	35.662921	21.696629
def confusion_matrix(y_true, y_pred, target_names=None, normalize=False, cmap=None, ax=None): """ Plot confustion matrix. Parameters ---------- y_true : array-like, shape = [n_samples] Correct target values (ground truth). y_pred : array-like, shape = [n_samples] ...	[ "def", "confusion_matrix", "(", "y_true", ",", "y_pred", ",", "target_names", "=", "None", ",", "normalize", "=", "False", ",", "cmap", "=", "None", ",", "ax", "=", "None", ")", ":", "if", "any", "(", "(", "val", "is", "None", "for", "val", "in", "...	33.096774	20.666667
def prev_sibling(self): """ The node immediately preceding the invocant in their parent's children list. If the invocant does not have a previous sibling, it is None. """ if self.parent is None: return None # Can't use index(); we need to test by identity ...	[ "def", "prev_sibling", "(", "self", ")", ":", "if", "self", ".", "parent", "is", "None", ":", "return", "None", "# Can't use index(); we need to test by identity", "for", "i", ",", "child", "in", "enumerate", "(", "self", ".", "parent", ".", "children", ")", ...	35.571429	16.428571
def _init_metadata(self): """stub""" self._min_string_length = None self._max_string_length = None self._texts_metadata = { 'element_id': Id(self.my_osid_object_form._authority, self.my_osid_object_form._namespace, 'te...	[ "def", "_init_metadata", "(", "self", ")", ":", "self", ".", "_min_string_length", "=", "None", "self", ".", "_max_string_length", "=", "None", "self", ".", "_texts_metadata", "=", "{", "'element_id'", ":", "Id", "(", "self", ".", "my_osid_object_form", ".", ...	38	12.545455
def set_result(self, values, visible_columns={}): """Set the result of this run. Use this method instead of manually setting the run attributes and calling after_execution(), this method handles all this by itself. @param values: a dictionary with result values as returned by RunExecutor...	[ "def", "set_result", "(", "self", ",", "values", ",", "visible_columns", "=", "{", "}", ")", ":", "exitcode", "=", "values", ".", "pop", "(", "'exitcode'", ",", "None", ")", "if", "exitcode", "is", "not", "None", ":", "self", ".", "values", "[", "'@e...	48.179487	17.897436
def show_vcs_output_vcs_cluster_type_info(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") show_vcs = ET.Element("show_vcs") config = show_vcs output = ET.SubElement(show_vcs, "output") vcs_cluster_type_info = ET.SubElement(output, "vcs-cl...	[ "def", "show_vcs_output_vcs_cluster_type_info", "(", "self", ",", "", "", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "show_vcs", "=", "ET", ".", "Element", "(", "\"show_vcs\"", ")", "config", "=", "show_vcs", "output",...	40.833333	15.25
def from_status(status, message=None, extra=None): """ Try to create an error from status code :param int status: HTTP status :param str message: Body content :param dict extra: Additional info :return: An error :rtype: cdumay_rest_client.errors.Error """ if status in HTTP_STATUS_CODES:...	[ "def", "from_status", "(", "status", ",", "message", "=", "None", ",", "extra", "=", "None", ")", ":", "if", "status", "in", "HTTP_STATUS_CODES", ":", "return", "HTTP_STATUS_CODES", "[", "status", "]", "(", "message", "=", "message", ",", "extra", "=", "...	32.25	15.625
def image_name(self): """ The image_name of a container is the concatenation of the ``image_index``, ``image_name_prefix``, and ``name`` of the image. Also, if $EXTRA_IMAGE_NAME is defined, that is appended """ if getattr(self, "_image_name", NotSpecified) is NotSpecifie...	[ "def", "image_name", "(", "self", ")", ":", "if", "getattr", "(", "self", ",", "\"_image_name\"", ",", "NotSpecified", ")", "is", "NotSpecified", ":", "self", ".", "_image_name", "=", "self", ".", "prefixed_image_name", "if", "self", ".", "image_index", ":",...	41.6875	24.8125
def is_unit_paused_set(): """Return the state of the kv().get('unit-paused'). This does NOT verify that the unit really is paused. To help with units that don't have HookData() (testing) if it excepts, return False """ try: with unitdata.HookData()() as t: kv = t[0] ...	[ "def", "is_unit_paused_set", "(", ")", ":", "try", ":", "with", "unitdata", ".", "HookData", "(", ")", "(", ")", "as", "t", ":", "kv", "=", "t", "[", "0", "]", "# transform something truth-y into a Boolean.", "return", "not", "(", "not", "(", "kv", ".", ...	32.142857	15.428571
def index_queryset(self, using=None): """ Used when the entire index for model is updated. """ return self.get_model().objects.filter(date_creation__lte=datetime.datetime.now())	[ "def", "index_queryset", "(", "self", ",", "using", "=", "None", ")", ":", "return", "self", ".", "get_model", "(", ")", ".", "objects", ".", "filter", "(", "date_creation__lte", "=", "datetime", ".", "datetime", ".", "now", "(", ")", ")" ]	41	13.8
def threshold_monitor_hidden_threshold_monitor_sfp_policy_area_threshold_high_threshold(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") threshold_monitor_hidden = ET.SubElement(config, "threshold-monitor-hidden", xmlns="urn:brocade.com:mgmt:brocade-threshold-mon...	[ "def", "threshold_monitor_hidden_threshold_monitor_sfp_policy_area_threshold_high_threshold", "(", "self", ",", "", "", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "threshold_monitor_hidden", "=", "ET", ".", "SubElement", "(", "c...	54.047619	20.857143
def get_key(self, section, key): """ Gets key value from settings file. :param section: Current section to retrieve key from. :type section: unicode :param key: Current key to retrieve. :type key: unicode :return: Current key value. :rtype: object ...	[ "def", "get_key", "(", "self", ",", "section", ",", "key", ")", ":", "LOGGER", ".", "debug", "(", "\"> Retrieving '{0}' in '{1}' section.\"", ".", "format", "(", "key", ",", "section", ")", ")", "self", ".", "__settings", ".", "beginGroup", "(", "section", ...	29.55	16.55
def main(arg1=55, arg2='test', arg3=None): """ This is a sample program to show how a learning agent can be logged using AIKIF. The idea is that this main function is your algorithm, which will run until it finds a successful result. The result is returned and the time taken is logged. ...	[ "def", "main", "(", "arg1", "=", "55", ",", "arg2", "=", "'test'", ",", "arg3", "=", "None", ")", ":", "print", "(", "'Starting dummy AI algorithm with :'", ",", "arg1", ",", "arg2", ",", "arg3", ")", "if", "arg3", "is", "None", ":", "arg3", "=", "["...	33.789474	16.315789
def register_entry_points(self, exclude=()): """Allow Gears plugins to inject themselves to the environment. For example, if your plugin's package contains such ``entry_points`` definition in ``setup.py``, ``gears_plugin.register`` function will be called with current environment during ...	[ "def", "register_entry_points", "(", "self", ",", "exclude", "=", "(", ")", ")", ":", "for", "entry_point", "in", "iter_entry_points", "(", "'gears'", ",", "'register'", ")", ":", "if", "entry_point", ".", "module_name", "not", "in", "exclude", ":", "registe...	41.714286	22
def pending(): """Show the number of pending signals by signal type.""" signalbus = current_app.extensions['signalbus'] pending = [] total_pending = 0 for signal_model in signalbus.get_signal_models(): count = signal_model.query.count() if count > 0: pending.append((coun...	[ "def", "pending", "(", ")", ":", "signalbus", "=", "current_app", ".", "extensions", "[", "'signalbus'", "]", "pending", "=", "[", "]", "total_pending", "=", "0", "for", "signal_model", "in", "signalbus", ".", "get_signal_models", "(", ")", ":", "count", "...	36.333333	17.333333
def wrapup(self): """ Finishes up after execution finishes, does not remove any graphical output. """ self._loader = None self._iterator = None super(LoadDataset, self).wrapup()	[ "def", "wrapup", "(", "self", ")", ":", "self", ".", "_loader", "=", "None", "self", ".", "_iterator", "=", "None", "super", "(", "LoadDataset", ",", "self", ")", ".", "wrapup", "(", ")" ]	31.285714	13
def read_msh(path): """ Reads a GMSH MSH file and returns a :class:`Mesh` instance. :arg path: path to MSH file. :type path: str """ elementMap = { 15:"point1", 1:"line2", 2:"tri3", 3:"quad4", 4:"tetra4", 5:"hexa8", ...	[ "def", "read_msh", "(", "path", ")", ":", "elementMap", "=", "{", "15", ":", "\"point1\"", ",", "1", ":", "\"line2\"", ",", "2", ":", "\"tri3\"", ",", "3", ":", "\"quad4\"", ",", "4", ":", "\"tetra4\"", ",", "5", ":", "\"hexa8\"", ",", "6", ":", ...	31.52381	14.920635
def read_certificate(self, certificate_name): ''' a method to retrieve the details about a server certificate :param certificate_name: string with name of server certificate :return: dictionary with certificate details ''' title = '%s.read_certificate' % self.__cla...	[ "def", "read_certificate", "(", "self", ",", "certificate_name", ")", ":", "title", "=", "'%s.read_certificate'", "%", "self", ".", "__class__", ".", "__name__", "# validate inputs", "input_fields", "=", "{", "'certificate_name'", ":", "certificate_name", "}", "for"...	39.042553	21.382979
def rtl_all(*vectorlist): """ Hardware equivalent of python native "all". :param WireVector vectorlist: all arguments are WireVectors of length 1 :return: WireVector of length 1 Returns a 1-bit WireVector which will hold a '1' only if all of the inputs are '1' (i.e. it is a big ol' AND gate) "...	[ "def", "rtl_all", "(", "*", "vectorlist", ")", ":", "if", "len", "(", "vectorlist", ")", "<=", "0", ":", "raise", "PyrtlError", "(", "'rtl_all requires at least 1 argument'", ")", "converted_vectorlist", "=", "[", "as_wires", "(", "v", ")", "for", "v", "in",...	43.733333	20.133333
def __grabHotkey(self, key, modifiers, window): """ Grab a specific hotkey in the given window """ logger.debug("Grabbing hotkey: %r %r", modifiers, key) try: keycode = self.__lookupKeyCode(key) mask = 0 for mod in modifiers: ma...	[ "def", "__grabHotkey", "(", "self", ",", "key", ",", "modifiers", ",", "window", ")", ":", "logger", ".", "debug", "(", "\"Grabbing hotkey: %r %r\"", ",", "modifiers", ",", "key", ")", "try", ":", "keycode", "=", "self", ".", "__lookupKeyCode", "(", "key",...	44.458333	28.958333
def extract_body(mail, types=None, field_key='copiousoutput'): """Returns a string view of a Message. If the `types` argument is set then any encoding types there will be used as the prefered encoding to extract. If `types` is None then :ref:`prefer_plaintext <prefer-plaintext>` will be consulted; if i...	[ "def", "extract_body", "(", "mail", ",", "types", "=", "None", ",", "field_key", "=", "'copiousoutput'", ")", ":", "preferred", "=", "'text/plain'", "if", "settings", ".", "get", "(", "'prefer_plaintext'", ")", "else", "'text/html'", "has_preferred", "=", "Fal...	37.017544	19.666667
def _get_coordinator_for_group(self, group): """ Returns the coordinator broker for a consumer group. GroupCoordinatorNotAvailableError will be raised if the coordinator does not currently exist for the group. GroupLoadInProgressError is raised if the coordinator is available ...	[ "def", "_get_coordinator_for_group", "(", "self", ",", "group", ")", ":", "resp", "=", "self", ".", "send_consumer_metadata_request", "(", "group", ")", "# If there's a problem with finding the coordinator, raise the", "# provided error", "kafka", ".", "errors", ".", "che...	36.105263	22.105263
def _get_voltage_magnitude_var(self, buses, generators): """ Returns the voltage magnitude variable set. """ Vm = array([b.v_magnitude for b in buses]) # For buses with generators initialise Vm from gen data. for g in generators: Vm[g.bus._i] = g.v_magnitude ...	[ "def", "_get_voltage_magnitude_var", "(", "self", ",", "buses", ",", "generators", ")", ":", "Vm", "=", "array", "(", "[", "b", ".", "v_magnitude", "for", "b", "in", "buses", "]", ")", "# For buses with generators initialise Vm from gen data.", "for", "g", "in",...	34.846154	16.230769
def generate_description(dataset_name, local_cache_dir=None): """Generates desription for a given dataset in its README.md file in a dataset local_cache_dir file. :param dataset_name: str The name of the data set to load from PMLB. :param local_cache_dir: str (required) The directory on...	[ "def", "generate_description", "(", "dataset_name", ",", "local_cache_dir", "=", "None", ")", ":", "assert", "(", "local_cache_dir", "!=", "None", ")", "readme_file", "=", "open", "(", "os", ".", "path", ".", "join", "(", "local_cache_dir", ",", "'datasets'", ...	48.789474	21.394737
def regex_search(self, regex: str) -> List[HistoryItem]: """Find history items which match a given regular expression :param regex: the regular expression to search for. :return: a list of history items, or an empty list if the string was not found """ regex = regex.strip() ...	[ "def", "regex_search", "(", "self", ",", "regex", ":", "str", ")", "->", "List", "[", "HistoryItem", "]", ":", "regex", "=", "regex", ".", "strip", "(", ")", "if", "regex", ".", "startswith", "(", "r'/'", ")", "and", "regex", ".", "endswith", "(", ...	45.133333	18.266667
def broadcast(self, response): '''Broadcast ``message`` to all :attr:`clients`.''' remove = set() channel = to_string(response[0]) message = response[1] if self.protocol: try: message = self.protocol.decode(message) except ProtocolError: ...	[ "def", "broadcast", "(", "self", ",", "response", ")", ":", "remove", "=", "set", "(", ")", "channel", "=", "to_string", "(", "response", "[", "0", "]", ")", "message", "=", "response", "[", "1", "]", "if", "self", ".", "protocol", ":", "try", ":",...	37.190476	13.095238
def create_admin_by_sis_id(self, sis_account_id, user_id, role): """ Flag an existing user as an admin within the account sis id. """ return self.create_admin(self._sis_id(sis_account_id), user_id, role)	[ "def", "create_admin_by_sis_id", "(", "self", ",", "sis_account_id", ",", "user_id", ",", "role", ")", ":", "return", "self", ".", "create_admin", "(", "self", ".", "_sis_id", "(", "sis_account_id", ")", ",", "user_id", ",", "role", ")" ]	46.2	17.8
def install_virtualenv_p2(root, python_version): """ Install virtual environment for Python 2.7+; removing the old one if it exists """ try: import virtualenv except ImportError: sys.stdout.write('Installing virtualenv into global interpreter \n') ret_code = subprocess.call([VE_GLOBA...	[ "def", "install_virtualenv_p2", "(", "root", ",", "python_version", ")", ":", "try", ":", "import", "virtualenv", "except", "ImportError", ":", "sys", ".", "stdout", ".", "write", "(", "'Installing virtualenv into global interpreter \\n'", ")", "ret_code", "=", "sub...	46.4375	23.8125
def filter(self, s, method='chebyshev', order=30): r"""Filter signals (analysis or synthesis). A signal is defined as a rank-3 tensor of shape ``(N_NODES, N_SIGNALS, N_FEATURES)``, where ``N_NODES`` is the number of nodes in the graph, ``N_SIGNALS`` is the number of independent signals,...	[ "def", "filter", "(", "self", ",", "s", ",", "method", "=", "'chebyshev'", ",", "order", "=", "30", ")", ":", "s", "=", "self", ".", "G", ".", "_check_signal", "(", "s", ")", "# TODO: not in self.Nin (Nf = Nin x Nout).", "if", "s", ".", "ndim", "==", "...	39.405405	23.102703
def GCT(gct_obj): """ Create a Dataframe with the contents of the GCT file """ # Handle all the various initialization types and get an IO object gct_io = _obtain_io(gct_obj) # Load the GCT file into a DataFrame df = pd.read_csv(gct_io, sep='\t', header=2, index_col=[0, 1], skip_blank_lines...	[ "def", "GCT", "(", "gct_obj", ")", ":", "# Handle all the various initialization types and get an IO object", "gct_io", "=", "_obtain_io", "(", "gct_obj", ")", "# Load the GCT file into a DataFrame", "df", "=", "pd", ".", "read_csv", "(", "gct_io", ",", "sep", "=", "'...	29	19.266667
def post_install_postgresql(): """ example default hook for installing postgresql """ from django.conf import settings as s with settings(warn_only=True): sudo('/etc/init.d/postgresql-8.4 restart') sudo("""psql template1 -c "ALTER USER postgres with encrypted password '%s';" """% env...	[ "def", "post_install_postgresql", "(", ")", ":", "from", "django", ".", "conf", "import", "settings", "as", "s", "with", "settings", "(", "warn_only", "=", "True", ")", ":", "sudo", "(", "'/etc/init.d/postgresql-8.4 restart'", ")", "sudo", "(", "\"\"\"psql templ...	62.8125	20.0625
def system_info(query): """system_info(query) -- print system specific information like OS, kernel, architecture etc. """ proc = subprocess.Popen(["uname -o"], stdout=subprocess.PIPE, shell=True) (out, err) = proc.communicate() print "operating system : "+str(out), proc = subprocess.Popen(["uname"], stdout=subp...	[ "def", "system_info", "(", "query", ")", ":", "proc", "=", "subprocess", ".", "Popen", "(", "[", "\"uname -o\"", "]", ",", "stdout", "=", "subprocess", ".", "PIPE", ",", "shell", "=", "True", ")", "(", "out", ",", "err", ")", "=", "proc", ".", "com...	35.782609	18.73913
def remove_dependent_cols(M, tol=1e-6, display=False): """ Returns a matrix where dependent columsn have been removed """ R = la.qr(M, mode='r')[0][:M.shape[1], :] I = (abs(R.diagonal())>tol) if sp.any(~I) and display: print(('cols ' + str(sp.where(~I)[0]) + ' have been r...	[ "def", "remove_dependent_cols", "(", "M", ",", "tol", "=", "1e-6", ",", "display", "=", "False", ")", ":", "R", "=", "la", ".", "qr", "(", "M", ",", "mode", "=", "'r'", ")", "[", "0", "]", "[", ":", "M", ".", "shape", "[", "1", "]", ",", ":...	32.384615	15.923077
def process_pc_pathsbetween(gene_names, neighbor_limit=1, database_filter=None, block_size=None): """Returns a BiopaxProcessor for a PathwayCommons paths-between query. The paths-between query finds the paths between a set of genes. Here source gene names are given in a single l...	[ "def", "process_pc_pathsbetween", "(", "gene_names", ",", "neighbor_limit", "=", "1", ",", "database_filter", "=", "None", ",", "block_size", "=", "None", ")", ":", "if", "not", "block_size", ":", "model", "=", "pcc", ".", "graph_query", "(", "'pathsbetween'",...	44.844828	22.241379
def RunPlaybookOnHosts(playbook_path, hosts, private_key, extra_vars=None): """ Runs the playbook and returns True if it completes successfully on all hosts. """ inventory = ansible_inventory.Inventory(hosts) if not inventory.list_hosts(): raise RuntimeError("Host list is empty.") stats = callbacks.Aggreg...	[ "def", "RunPlaybookOnHosts", "(", "playbook_path", ",", "hosts", ",", "private_key", ",", "extra_vars", "=", "None", ")", ":", "inventory", "=", "ansible_inventory", ".", "Inventory", "(", "hosts", ")", "if", "not", "inventory", ".", "list_hosts", "(", ")", ...	41.444444	14.777778
def _api_get(self): """ A helper method to GET this object from the server """ json = self._client.get(type(self).api_endpoint, model=self) self._populate(json)	[ "def", "_api_get", "(", "self", ")", ":", "json", "=", "self", ".", "_client", ".", "get", "(", "type", "(", "self", ")", ".", "api_endpoint", ",", "model", "=", "self", ")", "self", ".", "_populate", "(", "json", ")" ]	32.5	13.166667
def time_replacer(match, timestamp): """ Transforms the timestamp to the format the regex match determines. :param str match: the regex match :param time timestamp: the timestamp to format with match.group(1) :return str: the timestamp formated with strftime the way the ...	[ "def", "time_replacer", "(", "match", ",", "timestamp", ")", ":", "# match.group(0) = entire match", "# match.group(1) = match in braces #1", "return", "time", ".", "strftime", "(", "match", ".", "group", "(", "1", ")", ",", "time", ".", "gmtime", "(", "timestamp"...	44.916667	17.25
def get_type(self): """ Return the type of the field :rtype: string """ if self.type_idx_value == None: self.type_idx_value = self.CM.get_type(self.type_idx) return self.type_idx_value	[ "def", "get_type", "(", "self", ")", ":", "if", "self", ".", "type_idx_value", "==", "None", ":", "self", ".", "type_idx_value", "=", "self", ".", "CM", ".", "get_type", "(", "self", ".", "type_idx", ")", "return", "self", ".", "type_idx_value" ]	24.5	14.7
def _validate_singletons(self, boxes): """Several boxes can only occur once.""" count = self._collect_box_count(boxes) # Which boxes occur more than once? multiples = [box_id for box_id, bcount in count.items() if bcount > 1] if 'dtbl' in multiples: raise IOError('The...	[ "def", "_validate_singletons", "(", "self", ",", "boxes", ")", ":", "count", "=", "self", ".", "_collect_box_count", "(", "boxes", ")", "# Which boxes occur more than once?", "multiples", "=", "[", "box_id", "for", "box_id", ",", "bcount", "in", "count", ".", ...	50.571429	12.571429
def load_app(target): """ Load a bottle application based on a target string and return the application object. If the target is an import path (e.g. package.module), the application stack is used to isolate the routes defined in that module. If the target contains a colon (e.g. pac...	[ "def", "load_app", "(", "target", ")", ":", "tmp", "=", "app", ".", "push", "(", ")", "# Create a new \"default application\"", "rv", "=", "_load", "(", "target", ")", "# Import the target module", "app", ".", "remove", "(", "tmp", ")", "# Remove the temporary a...	48.846154	19.923077
def en_last(self): """ Report the energies from the last SCF present in the output. Returns a \|dict\| providing the various energy values from the last SCF cycle performed in the output. Keys are those of :attr:`~opan.output.OrcaOutput.p_en`. Any energy value not relevant to the ...	[ "def", "en_last", "(", "self", ")", ":", "# Initialize the return dict", "last_ens", "=", "dict", "(", ")", "# Iterate and store", "for", "(", "k", ",", "l", ")", "in", "self", ".", "en", ".", "items", "(", ")", ":", "last_ens", ".", "update", "(", "{"...	28.740741	19.814815
def _get_args(cls, args): # type: (tuple) -> Tuple[type, slice, Callable] """Return the parameters necessary to check type boundaries. Args: args: A slice representing the minimum and maximum lengths allowed for values of that string. Returns: A ...	[ "def", "_get_args", "(", "cls", ",", "args", ")", ":", "# type: (tuple) -> Tuple[type, slice, Callable]", "if", "isinstance", "(", "args", ",", "tuple", ")", ":", "raise", "TypeError", "(", "\"{}[...] takes exactly one argument.\"", ".", "format", "(", "cls", ".", ...	36.294118	20.941176
def get_radians(self): """ Return the angle between this vector and the positive x-axis measured in radians. Result will be between -pi and pi. """ if not self: raise NullVectorError() return math.atan2(self.y, self.x)	[ "def", "get_radians", "(", "self", ")", ":", "if", "not", "self", ":", "raise", "NullVectorError", "(", ")", "return", "math", ".", "atan2", "(", "self", ".", "y", ",", "self", ".", "x", ")" ]	49.4	4.6
def get_shift_by_data(temp_hourly, lon, lat, time_zone): '''function to get max temp shift (monthly) by hourly data Parameters ---- hourly_data_obs : observed hourly data lat : latitude in DezDeg lon : longitude in DezDeg time_zone: timezone ''' d...	[ "def", "get_shift_by_data", "(", "temp_hourly", ",", "lon", ",", "lat", ",", "time_zone", ")", ":", "daily_index", "=", "temp_hourly", ".", "resample", "(", "'D'", ")", ".", "mean", "(", ")", ".", "index", "sun_times", "=", "melodist", ".", "util", ".", ...	38.47619	20.190476
def update(self, file_id, data): """ Update a file in the File Manager. :param file_id: The unique id for the File Manager file. :type file_id: :py:class:`str` :param data: The request body parameters :type data: :py:class:`dict` data = { "name": stri...	[ "def", "update", "(", "self", ",", "file_id", ",", "data", ")", ":", "self", ".", "file_id", "=", "file_id", "if", "'name'", "not", "in", "data", ":", "raise", "KeyError", "(", "'The file must have a name'", ")", "if", "'file_data'", "not", "in", "data", ...	34.421053	13.684211
def repository_get(name, local=False, hosts=None, profile=None): ''' .. versionadded:: 2017.7.0 Get existing repository details. name Repository name local Retrieve only local information, default is false CLI example:: salt myminion elasticsearch.repository_get testr...	[ "def", "repository_get", "(", "name", ",", "local", "=", "False", ",", "hosts", "=", "None", ",", "profile", "=", "None", ")", ":", "es", "=", "_get_instance", "(", "hosts", ",", "profile", ")", "try", ":", "return", "es", ".", "snapshot", ".", "get_...	29.73913	27.913043
def generate_vectored_io_stripe_metadata(local_path, metadata): # type: (blobxfer.models.upload.LocalPath, dict) -> dict """Generate vectored io stripe metadata dict :param blobxfer.models.upload.LocalPath local_path: local path :param dict metadata: existing metadata dict :rtype: dict :return: ...	[ "def", "generate_vectored_io_stripe_metadata", "(", "local_path", ",", "metadata", ")", ":", "# type: (blobxfer.models.upload.LocalPath, dict) -> dict", "md", "=", "{", "_JSON_KEY_VECTORED_IO", ":", "{", "_JSON_KEY_VECTORED_IO_MODE", ":", "_JSON_KEY_VECTORED_IO_STRIPE", ",", "_...	42.75	16.791667
def get_undecorated_callback(self): """ Return the callback. If the callback is a decorated function, try to recover the original function. """ func = self.callback func = getattr(func, '__func__' if py3k else 'im_func', func) closure_attr = '__closure__' if py3k else 'func_c...	[ "def", "get_undecorated_callback", "(", "self", ")", ":", "func", "=", "self", ".", "callback", "func", "=", "getattr", "(", "func", ",", "'__func__'", "if", "py3k", "else", "'im_func'", ",", "func", ")", "closure_attr", "=", "'__closure__'", "if", "py3k", ...	52.235294	18.705882
def get_logs(self, project, release_id, **kwargs): """GetLogs. [Preview API] Get logs for a release Id. :param str project: Project ID or project name :param int release_id: Id of the release. :rtype: object """ route_values = {} if project is not None: ...	[ "def", "get_logs", "(", "self", ",", "project", ",", "release_id", ",", "", "", "kwargs", ")", ":", "route_values", "=", "{", "}", "if", "project", "is", "not", "None", ":", "route_values", "[", "'project'", "]", "=", "self", ".", "_serialize", ".", ...	45.863636	16.863636
def load(filename): """Retrieve a pickled object Parameter --------- filename : path Return ------ object Unpickled object """ filename = os.path.normcase(filename) try: with open(filename, 'rb') as f: u = pickle.Unpickler(f) return u.loa...	[ "def", "load", "(", "filename", ")", ":", "filename", "=", "os", ".", "path", ".", "normcase", "(", "filename", ")", "try", ":", "with", "open", "(", "filename", ",", "'rb'", ")", "as", "f", ":", "u", "=", "pickle", ".", "Unpickler", "(", "f", ")...	21.052632	20.473684
def query_associations(self, subjects=None, infer_subjects=True, include_xrefs=True): """ Query for a set of associations. Note: only a minimal association model is stored, so all results are returned as (subject_id,class_id) tuples Arguments: subjects: list list o...	[ "def", "query_associations", "(", "self", ",", "subjects", "=", "None", ",", "infer_subjects", "=", "True", ",", "include_xrefs", "=", "True", ")", ":", "if", "subjects", "is", "None", ":", "subjects", "=", "[", "]", "mset", "=", "set", "(", ")", "if",...	37.26	25.54
def _update_font(self, textfont): """Updates text font widget Parameters ---------- textfont: String \tFont name """ try: fontface_id = self.fonts.index(textfont) except ValueError: fontface_id = 0 self.font_choice_comb...	[ "def", "_update_font", "(", "self", ",", "textfont", ")", ":", "try", ":", "fontface_id", "=", "self", ".", "fonts", ".", "index", "(", "textfont", ")", "except", "ValueError", ":", "fontface_id", "=", "0", "self", ".", "font_choice_combo", ".", "Select", ...	19.117647	21.470588
def magic(self, arg_s): """DEPRECATED. Use run_line_magic() instead. Call a magic function by name. Input: a string containing the name of the magic function to call and any additional arguments to be passed to the magic. magic('name -opt foo bar') is equivalent to typing at t...	[ "def", "magic", "(", "self", ",", "arg_s", ")", ":", "# TODO: should we issue a loud deprecation warning here?", "magic_name", ",", "_", ",", "magic_arg_s", "=", "arg_s", ".", "partition", "(", "' '", ")", "magic_name", "=", "magic_name", ".", "lstrip", "(", "pr...	37.913043	25
def get_group_permissions(self, user_obj, obj=None): """ Returns a set of permission strings that this user has through his/her groups. """ if user_obj.is_anonymous() or obj is not None: return set() if not hasattr(user_obj, '_group_perm_cache'): i...	[ "def", "get_group_permissions", "(", "self", ",", "user_obj", ",", "obj", "=", "None", ")", ":", "if", "user_obj", ".", "is_anonymous", "(", ")", "or", "obj", "is", "not", "None", ":", "return", "set", "(", ")", "if", "not", "hasattr", "(", "user_obj",...	53.941176	25.235294
def extended_arg_patterns(self): """Iterator over patterns for positional arguments to be matched This yields the elements of :attr:`args`, extended by their `mode` value """ for arg in self._arg_iterator(self.args): if isinstance(arg, Pattern): if ar...	[ "def", "extended_arg_patterns", "(", "self", ")", ":", "for", "arg", "in", "self", ".", "_arg_iterator", "(", "self", ".", "args", ")", ":", "if", "isinstance", "(", "arg", ",", "Pattern", ")", ":", "if", "arg", ".", "mode", ">", "self", ".", "single...	32.6	13.6
def parse_supybot_log(filepath): """Parse a Supybot IRC log file. The method parses the Supybot IRC log file and returns an iterator of dictionaries. Each one of this, contains a message from the file. :param filepath: path to the IRC log file :returns: a generator of parsed m...	[ "def", "parse_supybot_log", "(", "filepath", ")", ":", "with", "open", "(", "filepath", ",", "'r'", ",", "errors", "=", "'surrogateescape'", ",", "newline", "=", "os", ".", "linesep", ")", "as", "f", ":", "parser", "=", "SupybotParser", "(", "f", ")", ...	35.68	19.48
def load(source, **kwargs) -> JsonObj: """ Deserialize a JSON source. :param source: a URI, File name or a .read()-supporting file-like object containing a JSON document :param kwargs: arguments. see: json.load for details :return: JsonObj representing fp """ if isinstance(source, str): ...	[ "def", "load", "(", "source", ",", "", "", "kwargs", ")", "->", "JsonObj", ":", "if", "isinstance", "(", "source", ",", "str", ")", ":", "if", "'://'", "in", "source", ":", "req", "=", "Request", "(", "source", ")", "req", ".", "add_header", "(",...	35.954545	17
def split(self): """Split the phase. When a phase is exhausted, it gets split into a pair of phases to be further solved. The split happens like so: 1) Select the first unsolved package scope. 2) Find some common dependency in the first N variants of the scope. 3) Split ...	[ "def", "split", "(", "self", ")", ":", "assert", "(", "self", ".", "status", "==", "SolverStatus", ".", "exhausted", ")", "scopes", "=", "[", "]", "next_scopes", "=", "[", "]", "split_i", "=", "None", "for", "i", ",", "scope", "in", "enumerate", "(",...	34.072727	18.727273
def convert_to_human_readable(sdp): """Convert the SDP relaxation to a human-readable format. :param sdp: The SDP relaxation to write. :type sdp: :class:`ncpol2sdpa.sdp`. :returns: tuple of the objective function in a string and a matrix of strings as the symbolic representation of the mo...	[ "def", "convert_to_human_readable", "(", "sdp", ")", ":", "objective", "=", "\"\"", "indices_in_objective", "=", "[", "]", "for", "i", ",", "tmp", "in", "enumerate", "(", "sdp", ".", "obj_facvar", ")", ":", "candidates", "=", "[", "key", "for", "key", ",...	37.530303	15.318182
def _supported_baremetal_transaction(self, context): """Verify transaction is complete and for us.""" port = context.current if self.trunk.is_trunk_subport_baremetal(port): return self._baremetal_set_binding(context) if not nexus_help.is_baremetal(port): return...	[ "def", "_supported_baremetal_transaction", "(", "self", ",", "context", ")", ":", "port", "=", "context", ".", "current", "if", "self", ".", "trunk", ".", "is_trunk_subport_baremetal", "(", "port", ")", ":", "return", "self", ".", "_baremetal_set_binding", "(", ...	29.192308	20.538462
def _IncrementNestLevel(): """Increments the per thread nest level of imports.""" # This is the top call to import (no nesting), init the per-thread nest level # and names set. if getattr(_import_local, 'nest_level', None) is None: _import_local.nest_level = 0 if _import_local.nest_level == 0: # Re-i...	[ "def", "_IncrementNestLevel", "(", ")", ":", "# This is the top call to import (no nesting), init the per-thread nest level", "# and names set.", "if", "getattr", "(", "_import_local", ",", "'nest_level'", ",", "None", ")", "is", "None", ":", "_import_local", ".", "nest_lev...	36.384615	17.769231
def update_cdh_version(self, new_cdh_version): """ Manually set the CDH version. @param new_cdh_version: New CDH version, e.g. 4.5.1 @return: An ApiCluster object @since: API v6 """ dic = self.to_json_dict() dic['fullVersion'] = new_cdh_version return self._put_cluster(dic)	[ "def", "update_cdh_version", "(", "self", ",", "new_cdh_version", ")", ":", "dic", "=", "self", ".", "to_json_dict", "(", ")", "dic", "[", "'fullVersion'", "]", "=", "new_cdh_version", "return", "self", ".", "_put_cluster", "(", "dic", ")" ]	27.363636	10.454545
def to_satoshis(input_quantity, input_type): ''' convert to satoshis, no rounding ''' assert input_type in UNIT_CHOICES, input_type # convert to satoshis if input_type in ('btc', 'mbtc', 'bit'): satoshis = float(input_quantity) * float(UNIT_MAPPINGS[input_type]['satoshis_per']) elif input_t...	[ "def", "to_satoshis", "(", "input_quantity", ",", "input_type", ")", ":", "assert", "input_type", "in", "UNIT_CHOICES", ",", "input_type", "# convert to satoshis", "if", "input_type", "in", "(", "'btc'", ",", "'mbtc'", ",", "'bit'", ")", ":", "satoshis", "=", ...	35.307692	19.307692
def report_errors(audit, url): """ Args: audit: results of `AxeCoreAudit.do_audit()`. url: the url of the page being audited. Raises: `AccessibilityError` """ errors = AxeCoreAudit.get_errors(audit) if errors["total"] > 0: msg = u"URL...	[ "def", "report_errors", "(", "audit", ",", "url", ")", ":", "errors", "=", "AxeCoreAudit", ".", "get_errors", "(", "audit", ")", "if", "errors", "[", "\"total\"", "]", ">", "0", ":", "msg", "=", "u\"URL '{}' has {} errors:\\n\\n{}\"", ".", "format", "(", "...	30	15.176471
def ndef(self): """An :class:`NDEF` object if found, otherwise :const:`None`.""" if self._ndef is None: ndef = self.NDEF(self) if ndef.has_changed: self._ndef = ndef return self._ndef	[ "def", "ndef", "(", "self", ")", ":", "if", "self", ".", "_ndef", "is", "None", ":", "ndef", "=", "self", ".", "NDEF", "(", "self", ")", "if", "ndef", ".", "has_changed", ":", "self", ".", "_ndef", "=", "ndef", "return", "self", ".", "_ndef" ]	34.428571	10.142857
def file_generator(self, sql, sql_args): """Generator for FileRecord :param sql: A SQL statement which must return rows describing files. :param sql_args: Any variables required to populate the query provided in 'sql' :return: A generator which produc...	[ "def", "file_generator", "(", "self", ",", "sql", ",", "sql_args", ")", ":", "self", ".", "con", ".", "execute", "(", "sql", ",", "sql_args", ")", "results", "=", "self", ".", "con", ".", "fetchall", "(", ")", "output", "=", "[", "]", "for", "resul...	45.081081	24.459459
def get_dependencies(self, version=None): ''' Parameters ---------- version: str string representing version number whose dependencies you are looking up ''' version = _process_version(self, version) history = self.get_history() f...	[ "def", "get_dependencies", "(", "self", ",", "version", "=", "None", ")", ":", "version", "=", "_process_version", "(", "self", ",", "version", ")", "history", "=", "self", ".", "get_history", "(", ")", "for", "v", "in", "reversed", "(", "history", ")", ...	29.058824	20.705882
def showConfig( self ): """ Show the config widget for the currently selected plugin. """ item = self.uiPluginTREE.currentItem() if not isinstance(item, PluginItem): return plugin = item.plugin() widget = self.findChild(QWidget, plugin.uniqueN...	[ "def", "showConfig", "(", "self", ")", ":", "item", "=", "self", ".", "uiPluginTREE", ".", "currentItem", "(", ")", "if", "not", "isinstance", "(", "item", ",", "PluginItem", ")", ":", "return", "plugin", "=", "item", ".", "plugin", "(", ")", "widget",...	33	14.647059
def _EStep(self, K, x, z_h1, pi_h, p_h): """ Description: Internal function for computing the E-Step of the EMM algorithm. """ # E-Step: for i in range(self.n): for k in range(K): denom_sum = 0 for k2 in range(K): ...	[ "def", "_EStep", "(", "self", ",", "K", ",", "x", ",", "z_h1", ",", "pi_h", ",", "p_h", ")", ":", "# E-Step:", "for", "i", "in", "range", "(", "self", ".", "n", ")", ":", "for", "k", "in", "range", "(", "K", ")", ":", "denom_sum", "=", "0", ...	38.833333	16.666667
def mock(self, slot, rpc_id, value): """Store a mock return value for an RPC Args: slot (SlotIdentifier): The slot we are mocking rpc_id (int): The rpc we are mocking value (int): The value that should be returned when the RPC is called. """ ...	[ "def", "mock", "(", "self", ",", "slot", ",", "rpc_id", ",", "value", ")", ":", "address", "=", "slot", ".", "address", "if", "address", "not", "in", "self", ".", "mock_rpcs", ":", "self", ".", "mock_rpcs", "[", "address", "]", "=", "{", "}", "self...	29.25	15.875
def run(self, data_service, project_file): """ Attach a remote file to activity with used relationship. :param data_service: DataServiceApi: service used to attach relationship :param project_file: ProjectFile: contains details about a file we will attach """ remote_path ...	[ "def", "run", "(", "self", ",", "data_service", ",", "project_file", ")", ":", "remote_path", "=", "project_file", ".", "path", "file_dict", "=", "data_service", ".", "get_file", "(", "project_file", ".", "id", ")", ".", "json", "(", ")", "file_version_id", ...	57.818182	23.272727
def dimension_values(self, dim, expanded=True, flat=True): """ The set of samples available along a particular dimension. """ dim_idx = self.get_dimension_index(dim) if not expanded and dim_idx == 0: return np.array(range(self.data.shape[1])) elif not expanded...	[ "def", "dimension_values", "(", "self", ",", "dim", ",", "expanded", "=", "True", ",", "flat", "=", "True", ")", ":", "dim_idx", "=", "self", ".", "get_dimension_index", "(", "dim", ")", "if", "not", "expanded", "and", "dim_idx", "==", "0", ":", "retur...	42.941176	13.529412
def _rm_units_from_var_name_single(var): """ NOTE: USE THIS FOR SINGLE CELLS ONLY When parsing sheets, all variable names be exact matches when cross-referenceing the metadata and data sections However, sometimes people like to put "age (years BP)" in one section, and "age" in the other. This causes pro...	[ "def", "_rm_units_from_var_name_single", "(", "var", ")", ":", "# Use the regex to match the cell", "m", "=", "re", ".", "match", "(", "re_var_w_units", ",", "var", ")", "# Should always get a match, but be careful anyways.", "if", "m", ":", "# m.group(1): variableName", ...	45.956522	22.130435
def user_stars(self, user_id, extra_query_params={}): """ client = BacklogClient("your_space_name", "your_api_key") client.user_stars(5) client.user_stars(5, {"count": 100, "order": "asc"}) """ return self.do("GET", "users/{user_id}/stars", url_para...	[ "def", "user_stars", "(", "self", ",", "user_id", ",", "extra_query_params", "=", "{", "}", ")", ":", "return", "self", ".", "do", "(", "\"GET\"", ",", "\"users/{user_id}/stars\"", ",", "url_params", "=", "{", "\"user_id\"", ":", "user_id", "}", ",", "quer...	43.555556	12.666667
def update_line(self, trace, xdata, ydata, side='left', draw=False, update_limits=True): """ update a single trace, for faster redraw """ x = self.conf.get_mpl_line(trace) x.set_data(xdata, ydata) datarange = [xdata.min(), xdata.max(), ydata.min(), ydata.max()] ...	[ "def", "update_line", "(", "self", ",", "trace", ",", "xdata", ",", "ydata", ",", "side", "=", "'left'", ",", "draw", "=", "False", ",", "update_limits", "=", "True", ")", ":", "x", "=", "self", ".", "conf", ".", "get_mpl_line", "(", "trace", ")", ...	34.8125	16.3125
def location_from_dictionary(d): """ Builds a Location object out of a data dictionary. Only certain properties of the dictionary are used: if these properties are not found or cannot be read, an error is issued. :param d: a data dictionary :type d: dict :returns: a Location instance ...	[ "def", "location_from_dictionary", "(", "d", ")", ":", "country", "=", "None", "if", "'sys'", "in", "d", "and", "'country'", "in", "d", "[", "'sys'", "]", ":", "country", "=", "d", "[", "'sys'", "]", "[", "'country'", "]", "if", "'city'", "in", "d", ...	31.204545	17.022727
def run(self, N=100): """ Parameter --------- N: int number of particles Returns ------- wgts: Weights object The importance weights (with attributes lw, W, and ESS) X: ThetaParticles object The N particles (wi...	[ "def", "run", "(", "self", ",", "N", "=", "100", ")", ":", "th", "=", "self", ".", "proposal", ".", "rvs", "(", "size", "=", "N", ")", "self", ".", "X", "=", "ThetaParticles", "(", "theta", "=", "th", ",", "lpost", "=", "None", ")", "self", "...	30.434783	15.913043
def list_consumer_group(self, project, logstore): """ List consumer group :type project: string :param project: project name :type logstore: string :param logstore: logstore name :return: ListConsumerGroupResponse """ resource = "/logstores...	[ "def", "list_consumer_group", "(", "self", ",", "project", ",", "logstore", ")", ":", "resource", "=", "\"/logstores/\"", "+", "logstore", "+", "\"/consumergroups\"", "params", "=", "{", "}", "headers", "=", "{", "}", "(", "resp", ",", "header", ")", "=", ...	29.055556	19.611111
def push_0(self, build_record_id, **kwargs): """ Build record push results. This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please define a `callback` function to be invoked when receiving the response. >>> def callb...	[ "def", "push_0", "(", "self", ",", "build_record_id", ",", "", "", "kwargs", ")", ":", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'callback'", ")", ":", "return", "self", ".", "push_0_with_http_info", "...	40.769231	17.230769
def getRenderModelOriginalPath(self, pchRenderModelName, pchOriginalPath, unOriginalPathLen): """ Provides a render model path that will load the unskinned model if the model name provided has been replace by the user. If the model hasn't been replaced the path value will still be a valid path t...	[ "def", "getRenderModelOriginalPath", "(", "self", ",", "pchRenderModelName", ",", "pchOriginalPath", ",", "unOriginalPathLen", ")", ":", "fn", "=", "self", ".", "function_table", ".", "getRenderModelOriginalPath", "peError", "=", "EVRRenderModelError", "(", ")", "resu...	57.363636	36.636364
def GetRegion(region_name): """ Converts region name string into boto Region object. """ regions = boto_ec2.regions() region = None valid_region_names = [] for r in regions: valid_region_names.append(r.name) if r.name == region_name: region = r break if not region: logging.info( ...	[ "def", "GetRegion", "(", "region_name", ")", ":", "regions", "=", "boto_ec2", ".", "regions", "(", ")", "region", "=", "None", "valid_region_names", "=", "[", "]", "for", "r", "in", "regions", ":", "valid_region_names", ".", "append", "(", "r", ".", "nam...	30.8	18.4
def _do_save_as(self, filename): """Saves spectrum back to FITS file.""" if len(self.spectrum.x) < 2: raise RuntimeError("Spectrum must have at least two points") if os.path.isfile(filename): os.unlink(filename) # PyFITS does not overwrite file hdu = self.spect...	[ "def", "_do_save_as", "(", "self", ",", "filename", ")", ":", "if", "len", "(", "self", ".", "spectrum", ".", "x", ")", "<", "2", ":", "raise", "RuntimeError", "(", "\"Spectrum must have at least two points\"", ")", "if", "os", ".", "path", ".", "isfile", ...	36.1	16
def file_md5(file_name): ''' Generate an MD5 hash of the specified file. @file_name - The file to hash. Returns an MD5 hex digest string. ''' md5 = hashlib.md5() with open(file_name, 'rb') as f: for chunk in iter(lambda: f.read(128 * md5.block_size), b''): md5.update(c...	[ "def", "file_md5", "(", "file_name", ")", ":", "md5", "=", "hashlib", ".", "md5", "(", ")", "with", "open", "(", "file_name", ",", "'rb'", ")", "as", "f", ":", "for", "chunk", "in", "iter", "(", "lambda", ":", "f", ".", "read", "(", "128", "*", ...	22.6	22.2
def _get_reference(self): """ Sets up references to important components. A reference is typically an index or a list of indices that point to the corresponding elements in a flattened array, which is how MuJoCo stores physical simulation data. """ super()._get_reference(...	[ "def", "_get_reference", "(", "self", ")", ":", "super", "(", ")", ".", "_get_reference", "(", ")", "self", ".", "hole_body_id", "=", "self", ".", "sim", ".", "model", ".", "body_name2id", "(", "\"hole\"", ")", "self", ".", "cyl_body_id", "=", "self", ...	49.333333	20.888889
def insert(self, iterable, data=None, weight=1.0): """Used to insert into he root node Args iterable(hashable): index or key used to identify data(object): data to be paired with the key """ self.root.insert(iterable, index=0, data=data, weight=1.0)	[ "def", "insert", "(", "self", ",", "iterable", ",", "data", "=", "None", ",", "weight", "=", "1.0", ")", ":", "self", ".", "root", ".", "insert", "(", "iterable", ",", "index", "=", "0", ",", "data", "=", "data", ",", "weight", "=", "1.0", ")" ]	37.375	17.625

def sep1(parser, separator): """Like sep but must consume at least one of parser. """ first = [parser()] def inner(): separator() return parser() return first + many(tri(inner))

[ "def", "sep1", "(", "parser", ",", "separator", ")", ":", "first", "=", "[", "parser", "(", ")", "]", "def", "inner", "(", ")", ":", "separator", "(", ")", "return", "parser", "(", ")", "return", "first", "+", "many", "(", "tri", "(", "inner", ")...

25.75

12.125

def louvain_clustering(self, X=None, res=1, method='modularity'): """Runs Louvain clustering using the vtraag implementation. Assumes that 'louvain' optional dependency is installed. Parameters ---------- res - float, optional, default 1 The resolution parameter whic...

[ "def", "louvain_clustering", "(", "self", ",", "X", "=", "None", ",", "res", "=", "1", ",", "method", "=", "'modularity'", ")", ":", "if", "X", "is", "None", ":", "X", "=", "self", ".", "adata", ".", "uns", "[", "'neighbors'", "]", "[", "'connectiv...

33.115385

19.307692

def _R2deriv(self,R,z,phi=0.,t=0.): """ NAME: _Rforce PURPOSE: evaluate the second radial derivative for this potential INPUT: R - Galactocentric cylindrical radius z - vertical height phi - azimuth t - time ...

[ "def", "_R2deriv", "(", "self", ",", "R", ",", "z", ",", "phi", "=", "0.", ",", "t", "=", "0.", ")", ":", "return", "self", ".", "_denom", "(", "R", ",", "z", ")", "**", "-", "1.5", "-", "3.", "*", "R", "**", "2", "*", "self", ".", "_deno...

29.411765

15.882353

def _valid_deleted_file(path): ''' Filters file path against unwanted directories and decides whether file is marked as deleted. Returns: True if file is desired deleted file, else False. Args: path: A string - path to file ''' ret = False if path.endswith(' (deleted)'): ...

[ "def", "_valid_deleted_file", "(", "path", ")", ":", "ret", "=", "False", "if", "path", ".", "endswith", "(", "' (deleted)'", ")", ":", "ret", "=", "True", "if", "re", ".", "compile", "(", "r\"\$path inode=[0-9]+\$$\"", ")", ".", "search", "(", "path", ...

25.05

24.45

def map_aliases_to_device_objects(self): """ A device object knows its rid, but not its alias. A portal object knows its device rids and aliases. This function adds an 'portals_aliases' key to all of the device objects so they can be sorted by alias. """...

[ "def", "map_aliases_to_device_objects", "(", "self", ")", ":", "all_devices", "=", "self", ".", "get_all_devices_in_portal", "(", ")", "for", "dev_o", "in", "all_devices", ":", "dev_o", "[", "'portals_aliases'", "]", "=", "self", ".", "get_portal_by_name", "(", ...

46.642857

19.5

def get_index_list(nside, nest, region): """ Returns the list of pixels indices for all the pixels in a region nside : HEALPix nside parameter nest : True for 'NESTED', False = 'RING' region : HEALPix region string """ tokens = parse_hpxregion(region) i...

[ "def", "get_index_list", "(", "nside", ",", "nest", ",", "region", ")", ":", "tokens", "=", "parse_hpxregion", "(", "region", ")", "if", "tokens", "[", "0", "]", "==", "'DISK'", ":", "vec", "=", "coords_to_vec", "(", "float", "(", "tokens", "[", "1", ...

44.59375

16.34375

def unregister(self, provider_class): """ Unregisters a provider from the site. """ if not issubclass(provider_class, BaseProvider): raise TypeError('%s must be a subclass of BaseProvider' % provider_class.__name__) if provider_class not in self._registered_p...

[ "def", "unregister", "(", "self", ",", "provider_class", ")", ":", "if", "not", "issubclass", "(", "provider_class", ",", "BaseProvider", ")", ":", "raise", "TypeError", "(", "'%s must be a subclass of BaseProvider'", "%", "provider_class", ".", "__name__", ")", "...

38.714286

19

def get_assign_annotation(node): """Get the type annotation of the assignment of the given node. :param node: The node to get the annotation for. :type node: astroid.nodes.Assign or astroid.nodes.AnnAssign :returns: The type annotation as a string, or None if one does not exist. :type: str or None...

[ "def", "get_assign_annotation", "(", "node", ")", ":", "annotation", "=", "None", "annotation_node", "=", "None", "try", ":", "annotation_node", "=", "node", ".", "annotation", "except", "AttributeError", ":", "# Python 2 has no support for type annotations, so use getatt...

31.2

21.28

def _call_when_changed(self, ticks, state): """ Called to fire the :attr:`when_changed` event handler; override this in descendents if additional (currently redundant) parameters need to be passed. """ method = self._when_changed() if method is None: s...

[ "def", "_call_when_changed", "(", "self", ",", "ticks", ",", "state", ")", ":", "method", "=", "self", ".", "_when_changed", "(", ")", "if", "method", "is", "None", ":", "self", ".", "when_changed", "=", "None", "else", ":", "method", "(", "ticks", ","...

34.545455

13.454545

def set_default_property_values(self, dev_class, class_prop, dev_prop): """ set_default_property_values(self, dev_class, class_prop, dev_prop) -> None Sets the default property values Parameters : - dev_class : (DeviceClass) device class object ...

[ "def", "set_default_property_values", "(", "self", ",", "dev_class", ",", "class_prop", ",", "dev_prop", ")", ":", "for", "name", "in", "class_prop", ":", "type", "=", "self", ".", "get_property_type", "(", "name", ",", "class_prop", ")", "val", "=", "self",...

42

20.153846

def write_data(self, variable_id, value): """ write values to the device """ i = 0 j = 0 while i < 10: try: self.inst.query('*IDN?') logger.info("Visa-MDO3014-Write- variable_id : %s et value : %s" %(variable_id, value)) ...

[ "def", "write_data", "(", "self", ",", "variable_id", ",", "value", ")", ":", "i", "=", "0", "j", "=", "0", "while", "i", "<", "10", ":", "try", ":", "self", ".", "inst", ".", "query", "(", "'*IDN?'", ")", "logger", ".", "info", "(", "\"Visa-MDO3...

46.131944

22.1875

def from_excel_to_ymd(excel_int): """ converts date in Microsoft Excel representation style and returns `(year, month, day)` tuple :param int excel_int: date as int (days since 1899-12-31) :return tuple(int, int, int): """ int_date = int(floor(excel_int)) int_date -= 1 if excel_int > 60 e...

[ "def", "from_excel_to_ymd", "(", "excel_int", ")", ":", "int_date", "=", "int", "(", "floor", "(", "excel_int", ")", ")", "int_date", "-=", "1", "if", "excel_int", ">", "60", "else", "0", "# jan dingerkus: There are two errors in excels own date <> int conversion.", ...

32.971429

24.514286

def constrain_opts(self, constraint_dict, options): """ Return result of constraints and options against a template """ constraints = {} for constraint in constraint_dict: if constraint != 'self': if (constraint_dict[constraint] or constraint_d...

[ "def", "constrain_opts", "(", "self", ",", "constraint_dict", ",", "options", ")", ":", "constraints", "=", "{", "}", "for", "constraint", "in", "constraint_dict", ":", "if", "constraint", "!=", "'self'", ":", "if", "(", "constraint_dict", "[", "constraint", ...

52.272727

13.272727

def _split(self, string): """Iterates over the ngrams of a string (no padding). >>> from ngram import NGram >>> n = NGram() >>> list(n._split("hamegg")) ['ham', 'ame', 'meg', 'egg'] """ for i in range(len(string) - self.N + 1): yield string[i:i + self...

[ "def", "_split", "(", "self", ",", "string", ")", ":", "for", "i", "in", "range", "(", "len", "(", "string", ")", "-", "self", ".", "N", "+", "1", ")", ":", "yield", "string", "[", "i", ":", "i", "+", "self", ".", "N", "]" ]

31.4

9.6

def undo(self): ''' Undo the last action. ''' if self.canundo(): undoable = self._undos.pop() with self._pausereceiver(): try: undoable.undo() except: self.clear() raise ...

[ "def", "undo", "(", "self", ")", ":", "if", "self", ".", "canundo", "(", ")", ":", "undoable", "=", "self", ".", "_undos", ".", "pop", "(", ")", "with", "self", ".", "_pausereceiver", "(", ")", ":", "try", ":", "undoable", ".", "undo", "(", ")", ...

31.076923

10.461538

def create_background(bg_type, fafile, outfile, genome="hg18", width=200, nr_times=10, custom_background=None): """Create background of a specific type. Parameters ---------- bg_type : str Name of background type. fafile : str Name of input FASTA file. outfile : str Na...

[ "def", "create_background", "(", "bg_type", ",", "fafile", ",", "outfile", ",", "genome", "=", "\"hg18\"", ",", "width", "=", "200", ",", "nr_times", "=", "10", ",", "custom_background", "=", "None", ")", ":", "width", "=", "int", "(", "width", ")", "c...

35.662921

21.696629

def confusion_matrix(y_true, y_pred, target_names=None, normalize=False, cmap=None, ax=None): """ Plot confustion matrix. Parameters ---------- y_true : array-like, shape = [n_samples] Correct target values (ground truth). y_pred : array-like, shape = [n_samples] ...

[ "def", "confusion_matrix", "(", "y_true", ",", "y_pred", ",", "target_names", "=", "None", ",", "normalize", "=", "False", ",", "cmap", "=", "None", ",", "ax", "=", "None", ")", ":", "if", "any", "(", "(", "val", "is", "None", "for", "val", "in", "...

33.096774

20.666667

def prev_sibling(self): """ The node immediately preceding the invocant in their parent's children list. If the invocant does not have a previous sibling, it is None. """ if self.parent is None: return None # Can't use index(); we need to test by identity ...

[ "def", "prev_sibling", "(", "self", ")", ":", "if", "self", ".", "parent", "is", "None", ":", "return", "None", "# Can't use index(); we need to test by identity", "for", "i", ",", "child", "in", "enumerate", "(", "self", ".", "parent", ".", "children", ")", ...

35.571429

16.428571

def _init_metadata(self): """stub""" self._min_string_length = None self._max_string_length = None self._texts_metadata = { 'element_id': Id(self.my_osid_object_form._authority, self.my_osid_object_form._namespace, 'te...

[ "def", "_init_metadata", "(", "self", ")", ":", "self", ".", "_min_string_length", "=", "None", "self", ".", "_max_string_length", "=", "None", "self", ".", "_texts_metadata", "=", "{", "'element_id'", ":", "Id", "(", "self", ".", "my_osid_object_form", ".", ...

38

12.545455

def set_result(self, values, visible_columns={}): """Set the result of this run. Use this method instead of manually setting the run attributes and calling after_execution(), this method handles all this by itself. @param values: a dictionary with result values as returned by RunExecutor...

[ "def", "set_result", "(", "self", ",", "values", ",", "visible_columns", "=", "{", "}", ")", ":", "exitcode", "=", "values", ".", "pop", "(", "'exitcode'", ",", "None", ")", "if", "exitcode", "is", "not", "None", ":", "self", ".", "values", "[", "'@e...

48.179487

17.897436

def show_vcs_output_vcs_cluster_type_info(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") show_vcs = ET.Element("show_vcs") config = show_vcs output = ET.SubElement(show_vcs, "output") vcs_cluster_type_info = ET.SubElement(output, "vcs-cl...

[ "def", "show_vcs_output_vcs_cluster_type_info", "(", "self", ",", "*", "*", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "show_vcs", "=", "ET", ".", "Element", "(", "\"show_vcs\"", ")", "config", "=", "show_vcs", "output",...

40.833333

15.25

def from_status(status, message=None, extra=None): """ Try to create an error from status code :param int status: HTTP status :param str message: Body content :param dict extra: Additional info :return: An error :rtype: cdumay_rest_client.errors.Error """ if status in HTTP_STATUS_CODES:...

[ "def", "from_status", "(", "status", ",", "message", "=", "None", ",", "extra", "=", "None", ")", ":", "if", "status", "in", "HTTP_STATUS_CODES", ":", "return", "HTTP_STATUS_CODES", "[", "status", "]", "(", "message", "=", "message", ",", "extra", "=", "...

32.25

15.625

def image_name(self): """ The image_name of a container is the concatenation of the ``image_index``, ``image_name_prefix``, and ``name`` of the image. Also, if $EXTRA_IMAGE_NAME is defined, that is appended """ if getattr(self, "_image_name", NotSpecified) is NotSpecifie...

[ "def", "image_name", "(", "self", ")", ":", "if", "getattr", "(", "self", ",", "\"_image_name\"", ",", "NotSpecified", ")", "is", "NotSpecified", ":", "self", ".", "_image_name", "=", "self", ".", "prefixed_image_name", "if", "self", ".", "image_index", ":",...

41.6875

24.8125

def is_unit_paused_set(): """Return the state of the kv().get('unit-paused'). This does NOT verify that the unit really is paused. To help with units that don't have HookData() (testing) if it excepts, return False """ try: with unitdata.HookData()() as t: kv = t[0] ...

[ "def", "is_unit_paused_set", "(", ")", ":", "try", ":", "with", "unitdata", ".", "HookData", "(", ")", "(", ")", "as", "t", ":", "kv", "=", "t", "[", "0", "]", "# transform something truth-y into a Boolean.", "return", "not", "(", "not", "(", "kv", ".", ...

32.142857

15.428571

def index_queryset(self, using=None): """ Used when the entire index for model is updated. """ return self.get_model().objects.filter(date_creation__lte=datetime.datetime.now())

[ "def", "index_queryset", "(", "self", ",", "using", "=", "None", ")", ":", "return", "self", ".", "get_model", "(", ")", ".", "objects", ".", "filter", "(", "date_creation__lte", "=", "datetime", ".", "datetime", ".", "now", "(", ")", ")" ]

41

13.8

def threshold_monitor_hidden_threshold_monitor_sfp_policy_area_threshold_high_threshold(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") threshold_monitor_hidden = ET.SubElement(config, "threshold-monitor-hidden", xmlns="urn:brocade.com:mgmt:brocade-threshold-mon...

[ "def", "threshold_monitor_hidden_threshold_monitor_sfp_policy_area_threshold_high_threshold", "(", "self", ",", "*", "*", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "threshold_monitor_hidden", "=", "ET", ".", "SubElement", "(", "c...

54.047619

20.857143

def get_key(self, section, key): """ Gets key value from settings file. :param section: Current section to retrieve key from. :type section: unicode :param key: Current key to retrieve. :type key: unicode :return: Current key value. :rtype: object ...

[ "def", "get_key", "(", "self", ",", "section", ",", "key", ")", ":", "LOGGER", ".", "debug", "(", "\"> Retrieving '{0}' in '{1}' section.\"", ".", "format", "(", "key", ",", "section", ")", ")", "self", ".", "__settings", ".", "beginGroup", "(", "section", ...

29.55

16.55

def main(arg1=55, arg2='test', arg3=None): """ This is a sample program to show how a learning agent can be logged using AIKIF. The idea is that this main function is your algorithm, which will run until it finds a successful result. The result is returned and the time taken is logged. ...

[ "def", "main", "(", "arg1", "=", "55", ",", "arg2", "=", "'test'", ",", "arg3", "=", "None", ")", ":", "print", "(", "'Starting dummy AI algorithm with :'", ",", "arg1", ",", "arg2", ",", "arg3", ")", "if", "arg3", "is", "None", ":", "arg3", "=", "["...

33.789474

16.315789

def register_entry_points(self, exclude=()): """Allow Gears plugins to inject themselves to the environment. For example, if your plugin's package contains such ``entry_points`` definition in ``setup.py``, ``gears_plugin.register`` function will be called with current environment during ...

[ "def", "register_entry_points", "(", "self", ",", "exclude", "=", "(", ")", ")", ":", "for", "entry_point", "in", "iter_entry_points", "(", "'gears'", ",", "'register'", ")", ":", "if", "entry_point", ".", "module_name", "not", "in", "exclude", ":", "registe...

41.714286

22

def pending(): """Show the number of pending signals by signal type.""" signalbus = current_app.extensions['signalbus'] pending = [] total_pending = 0 for signal_model in signalbus.get_signal_models(): count = signal_model.query.count() if count > 0: pending.append((coun...

[ "def", "pending", "(", ")", ":", "signalbus", "=", "current_app", ".", "extensions", "[", "'signalbus'", "]", "pending", "=", "[", "]", "total_pending", "=", "0", "for", "signal_model", "in", "signalbus", ".", "get_signal_models", "(", ")", ":", "count", "...

36.333333

17.333333

def wrapup(self): """ Finishes up after execution finishes, does not remove any graphical output. """ self._loader = None self._iterator = None super(LoadDataset, self).wrapup()

[ "def", "wrapup", "(", "self", ")", ":", "self", ".", "_loader", "=", "None", "self", ".", "_iterator", "=", "None", "super", "(", "LoadDataset", ",", "self", ")", ".", "wrapup", "(", ")" ]

31.285714

13

def read_msh(path): """ Reads a GMSH MSH file and returns a :class:`Mesh` instance. :arg path: path to MSH file. :type path: str """ elementMap = { 15:"point1", 1:"line2", 2:"tri3", 3:"quad4", 4:"tetra4", 5:"hexa8", ...

[ "def", "read_msh", "(", "path", ")", ":", "elementMap", "=", "{", "15", ":", "\"point1\"", ",", "1", ":", "\"line2\"", ",", "2", ":", "\"tri3\"", ",", "3", ":", "\"quad4\"", ",", "4", ":", "\"tetra4\"", ",", "5", ":", "\"hexa8\"", ",", "6", ":", ...

31.52381

14.920635

def read_certificate(self, certificate_name): ''' a method to retrieve the details about a server certificate :param certificate_name: string with name of server certificate :return: dictionary with certificate details ''' title = '%s.read_certificate' % self.__cla...

[ "def", "read_certificate", "(", "self", ",", "certificate_name", ")", ":", "title", "=", "'%s.read_certificate'", "%", "self", ".", "__class__", ".", "__name__", "# validate inputs", "input_fields", "=", "{", "'certificate_name'", ":", "certificate_name", "}", "for"...

39.042553

21.382979

def rtl_all(*vectorlist): """ Hardware equivalent of python native "all". :param WireVector vectorlist: all arguments are WireVectors of length 1 :return: WireVector of length 1 Returns a 1-bit WireVector which will hold a '1' only if all of the inputs are '1' (i.e. it is a big ol' AND gate) "...

[ "def", "rtl_all", "(", "*", "vectorlist", ")", ":", "if", "len", "(", "vectorlist", ")", "<=", "0", ":", "raise", "PyrtlError", "(", "'rtl_all requires at least 1 argument'", ")", "converted_vectorlist", "=", "[", "as_wires", "(", "v", ")", "for", "v", "in",...

43.733333

20.133333

def __grabHotkey(self, key, modifiers, window): """ Grab a specific hotkey in the given window """ logger.debug("Grabbing hotkey: %r %r", modifiers, key) try: keycode = self.__lookupKeyCode(key) mask = 0 for mod in modifiers: ma...

[ "def", "__grabHotkey", "(", "self", ",", "key", ",", "modifiers", ",", "window", ")", ":", "logger", ".", "debug", "(", "\"Grabbing hotkey: %r %r\"", ",", "modifiers", ",", "key", ")", "try", ":", "keycode", "=", "self", ".", "__lookupKeyCode", "(", "key",...

44.458333

28.958333

def extract_body(mail, types=None, field_key='copiousoutput'): """Returns a string view of a Message. If the `types` argument is set then any encoding types there will be used as the prefered encoding to extract. If `types` is None then :ref:`prefer_plaintext <prefer-plaintext>` will be consulted; if i...

[ "def", "extract_body", "(", "mail", ",", "types", "=", "None", ",", "field_key", "=", "'copiousoutput'", ")", ":", "preferred", "=", "'text/plain'", "if", "settings", ".", "get", "(", "'prefer_plaintext'", ")", "else", "'text/html'", "has_preferred", "=", "Fal...

37.017544

19.666667

def _get_coordinator_for_group(self, group): """ Returns the coordinator broker for a consumer group. GroupCoordinatorNotAvailableError will be raised if the coordinator does not currently exist for the group. GroupLoadInProgressError is raised if the coordinator is available ...

[ "def", "_get_coordinator_for_group", "(", "self", ",", "group", ")", ":", "resp", "=", "self", ".", "send_consumer_metadata_request", "(", "group", ")", "# If there's a problem with finding the coordinator, raise the", "# provided error", "kafka", ".", "errors", ".", "che...

36.105263

22.105263

def _get_voltage_magnitude_var(self, buses, generators): """ Returns the voltage magnitude variable set. """ Vm = array([b.v_magnitude for b in buses]) # For buses with generators initialise Vm from gen data. for g in generators: Vm[g.bus._i] = g.v_magnitude ...

[ "def", "_get_voltage_magnitude_var", "(", "self", ",", "buses", ",", "generators", ")", ":", "Vm", "=", "array", "(", "[", "b", ".", "v_magnitude", "for", "b", "in", "buses", "]", ")", "# For buses with generators initialise Vm from gen data.", "for", "g", "in",...

34.846154

16.230769

def generate_description(dataset_name, local_cache_dir=None): """Generates desription for a given dataset in its README.md file in a dataset local_cache_dir file. :param dataset_name: str The name of the data set to load from PMLB. :param local_cache_dir: str (required) The directory on...

[ "def", "generate_description", "(", "dataset_name", ",", "local_cache_dir", "=", "None", ")", ":", "assert", "(", "local_cache_dir", "!=", "None", ")", "readme_file", "=", "open", "(", "os", ".", "path", ".", "join", "(", "local_cache_dir", ",", "'datasets'", ...

48.789474

21.394737

def regex_search(self, regex: str) -> List[HistoryItem]: """Find history items which match a given regular expression :param regex: the regular expression to search for. :return: a list of history items, or an empty list if the string was not found """ regex = regex.strip() ...

[ "def", "regex_search", "(", "self", ",", "regex", ":", "str", ")", "->", "List", "[", "HistoryItem", "]", ":", "regex", "=", "regex", ".", "strip", "(", ")", "if", "regex", ".", "startswith", "(", "r'/'", ")", "and", "regex", ".", "endswith", "(", ...

45.133333

18.266667

def broadcast(self, response): '''Broadcast ``message`` to all :attr:`clients`.''' remove = set() channel = to_string(response[0]) message = response[1] if self.protocol: try: message = self.protocol.decode(message) except ProtocolError: ...

[ "def", "broadcast", "(", "self", ",", "response", ")", ":", "remove", "=", "set", "(", ")", "channel", "=", "to_string", "(", "response", "[", "0", "]", ")", "message", "=", "response", "[", "1", "]", "if", "self", ".", "protocol", ":", "try", ":",...

37.190476

13.095238

def create_admin_by_sis_id(self, sis_account_id, user_id, role): """ Flag an existing user as an admin within the account sis id. """ return self.create_admin(self._sis_id(sis_account_id), user_id, role)

[ "def", "create_admin_by_sis_id", "(", "self", ",", "sis_account_id", ",", "user_id", ",", "role", ")", ":", "return", "self", ".", "create_admin", "(", "self", ".", "_sis_id", "(", "sis_account_id", ")", ",", "user_id", ",", "role", ")" ]

46.2

17.8

def install_virtualenv_p2(root, python_version): """ Install virtual environment for Python 2.7+; removing the old one if it exists """ try: import virtualenv except ImportError: sys.stdout.write('Installing virtualenv into global interpreter \n') ret_code = subprocess.call([VE_GLOBA...

[ "def", "install_virtualenv_p2", "(", "root", ",", "python_version", ")", ":", "try", ":", "import", "virtualenv", "except", "ImportError", ":", "sys", ".", "stdout", ".", "write", "(", "'Installing virtualenv into global interpreter \\n'", ")", "ret_code", "=", "sub...

46.4375

23.8125

def filter(self, s, method='chebyshev', order=30): r"""Filter signals (analysis or synthesis). A signal is defined as a rank-3 tensor of shape ``(N_NODES, N_SIGNALS, N_FEATURES)``, where ``N_NODES`` is the number of nodes in the graph, ``N_SIGNALS`` is the number of independent signals,...

[ "def", "filter", "(", "self", ",", "s", ",", "method", "=", "'chebyshev'", ",", "order", "=", "30", ")", ":", "s", "=", "self", ".", "G", ".", "_check_signal", "(", "s", ")", "# TODO: not in self.Nin (Nf = Nin x Nout).", "if", "s", ".", "ndim", "==", "...

39.405405

23.102703

def GCT(gct_obj): """ Create a Dataframe with the contents of the GCT file """ # Handle all the various initialization types and get an IO object gct_io = _obtain_io(gct_obj) # Load the GCT file into a DataFrame df = pd.read_csv(gct_io, sep='\t', header=2, index_col=[0, 1], skip_blank_lines...

[ "def", "GCT", "(", "gct_obj", ")", ":", "# Handle all the various initialization types and get an IO object", "gct_io", "=", "_obtain_io", "(", "gct_obj", ")", "# Load the GCT file into a DataFrame", "df", "=", "pd", ".", "read_csv", "(", "gct_io", ",", "sep", "=", "'...

29

19.266667

def post_install_postgresql(): """ example default hook for installing postgresql """ from django.conf import settings as s with settings(warn_only=True): sudo('/etc/init.d/postgresql-8.4 restart') sudo("""psql template1 -c "ALTER USER postgres with encrypted password '%s';" """% env...

[ "def", "post_install_postgresql", "(", ")", ":", "from", "django", ".", "conf", "import", "settings", "as", "s", "with", "settings", "(", "warn_only", "=", "True", ")", ":", "sudo", "(", "'/etc/init.d/postgresql-8.4 restart'", ")", "sudo", "(", "\"\"\"psql templ...

62.8125

20.0625

def system_info(query): """system_info(query) -- print system specific information like OS, kernel, architecture etc. """ proc = subprocess.Popen(["uname -o"], stdout=subprocess.PIPE, shell=True) (out, err) = proc.communicate() print "operating system : "+str(out), proc = subprocess.Popen(["uname"], stdout=subp...

[ "def", "system_info", "(", "query", ")", ":", "proc", "=", "subprocess", ".", "Popen", "(", "[", "\"uname -o\"", "]", ",", "stdout", "=", "subprocess", ".", "PIPE", ",", "shell", "=", "True", ")", "(", "out", ",", "err", ")", "=", "proc", ".", "com...

35.782609

18.73913

def remove_dependent_cols(M, tol=1e-6, display=False): """ Returns a matrix where dependent columsn have been removed """ R = la.qr(M, mode='r')[0][:M.shape[1], :] I = (abs(R.diagonal())>tol) if sp.any(~I) and display: print(('cols ' + str(sp.where(~I)[0]) + ' have been r...

[ "def", "remove_dependent_cols", "(", "M", ",", "tol", "=", "1e-6", ",", "display", "=", "False", ")", ":", "R", "=", "la", ".", "qr", "(", "M", ",", "mode", "=", "'r'", ")", "[", "0", "]", "[", ":", "M", ".", "shape", "[", "1", "]", ",", ":...

32.384615

15.923077

def process_pc_pathsbetween(gene_names, neighbor_limit=1, database_filter=None, block_size=None): """Returns a BiopaxProcessor for a PathwayCommons paths-between query. The paths-between query finds the paths between a set of genes. Here source gene names are given in a single l...

[ "def", "process_pc_pathsbetween", "(", "gene_names", ",", "neighbor_limit", "=", "1", ",", "database_filter", "=", "None", ",", "block_size", "=", "None", ")", ":", "if", "not", "block_size", ":", "model", "=", "pcc", ".", "graph_query", "(", "'pathsbetween'",...

44.844828

22.241379

def RunPlaybookOnHosts(playbook_path, hosts, private_key, extra_vars=None): """ Runs the playbook and returns True if it completes successfully on all hosts. """ inventory = ansible_inventory.Inventory(hosts) if not inventory.list_hosts(): raise RuntimeError("Host list is empty.") stats = callbacks.Aggreg...

[ "def", "RunPlaybookOnHosts", "(", "playbook_path", ",", "hosts", ",", "private_key", ",", "extra_vars", "=", "None", ")", ":", "inventory", "=", "ansible_inventory", ".", "Inventory", "(", "hosts", ")", "if", "not", "inventory", ".", "list_hosts", "(", ")", ...

41.444444

14.777778

def _api_get(self): """ A helper method to GET this object from the server """ json = self._client.get(type(self).api_endpoint, model=self) self._populate(json)

[ "def", "_api_get", "(", "self", ")", ":", "json", "=", "self", ".", "_client", ".", "get", "(", "type", "(", "self", ")", ".", "api_endpoint", ",", "model", "=", "self", ")", "self", ".", "_populate", "(", "json", ")" ]

32.5

13.166667

def time_replacer(match, timestamp): """ Transforms the timestamp to the format the regex match determines. :param str match: the regex match :param time timestamp: the timestamp to format with match.group(1) :return str: the timestamp formated with strftime the way the ...

[ "def", "time_replacer", "(", "match", ",", "timestamp", ")", ":", "# match.group(0) = entire match", "# match.group(1) = match in braces #1", "return", "time", ".", "strftime", "(", "match", ".", "group", "(", "1", ")", ",", "time", ".", "gmtime", "(", "timestamp"...

44.916667

17.25

def get_type(self): """ Return the type of the field :rtype: string """ if self.type_idx_value == None: self.type_idx_value = self.CM.get_type(self.type_idx) return self.type_idx_value

[ "def", "get_type", "(", "self", ")", ":", "if", "self", ".", "type_idx_value", "==", "None", ":", "self", ".", "type_idx_value", "=", "self", ".", "CM", ".", "get_type", "(", "self", ".", "type_idx", ")", "return", "self", ".", "type_idx_value" ]

24.5

14.7

def _validate_singletons(self, boxes): """Several boxes can only occur once.""" count = self._collect_box_count(boxes) # Which boxes occur more than once? multiples = [box_id for box_id, bcount in count.items() if bcount > 1] if 'dtbl' in multiples: raise IOError('The...

[ "def", "_validate_singletons", "(", "self", ",", "boxes", ")", ":", "count", "=", "self", ".", "_collect_box_count", "(", "boxes", ")", "# Which boxes occur more than once?", "multiples", "=", "[", "box_id", "for", "box_id", ",", "bcount", "in", "count", ".", ...

50.571429

12.571429

def load_app(target): """ Load a bottle application based on a target string and return the application object. If the target is an import path (e.g. package.module), the application stack is used to isolate the routes defined in that module. If the target contains a colon (e.g. pac...

[ "def", "load_app", "(", "target", ")", ":", "tmp", "=", "app", ".", "push", "(", ")", "# Create a new \"default application\"", "rv", "=", "_load", "(", "target", ")", "# Import the target module", "app", ".", "remove", "(", "tmp", ")", "# Remove the temporary a...

48.846154

19.923077

def en_last(self): """ Report the energies from the last SCF present in the output. Returns a |dict| providing the various energy values from the last SCF cycle performed in the output. Keys are those of :attr:`~opan.output.OrcaOutput.p_en`. Any energy value not relevant to the ...

[ "def", "en_last", "(", "self", ")", ":", "# Initialize the return dict", "last_ens", "=", "dict", "(", ")", "# Iterate and store", "for", "(", "k", ",", "l", ")", "in", "self", ".", "en", ".", "items", "(", ")", ":", "last_ens", ".", "update", "(", "{"...

28.740741

19.814815

def _get_args(cls, args): # type: (tuple) -> Tuple[type, slice, Callable] """Return the parameters necessary to check type boundaries. Args: args: A slice representing the minimum and maximum lengths allowed for values of that string. Returns: A ...

[ "def", "_get_args", "(", "cls", ",", "args", ")", ":", "# type: (tuple) -> Tuple[type, slice, Callable]", "if", "isinstance", "(", "args", ",", "tuple", ")", ":", "raise", "TypeError", "(", "\"{}[...] takes exactly one argument.\"", ".", "format", "(", "cls", ".", ...

36.294118

20.941176

def get_radians(self): """ Return the angle between this vector and the positive x-axis measured in radians. Result will be between -pi and pi. """ if not self: raise NullVectorError() return math.atan2(self.y, self.x)

[ "def", "get_radians", "(", "self", ")", ":", "if", "not", "self", ":", "raise", "NullVectorError", "(", ")", "return", "math", ".", "atan2", "(", "self", ".", "y", ",", "self", ".", "x", ")" ]

49.4

4.6

def get_shift_by_data(temp_hourly, lon, lat, time_zone): '''function to get max temp shift (monthly) by hourly data Parameters ---- hourly_data_obs : observed hourly data lat : latitude in DezDeg lon : longitude in DezDeg time_zone: timezone ''' d...

[ "def", "get_shift_by_data", "(", "temp_hourly", ",", "lon", ",", "lat", ",", "time_zone", ")", ":", "daily_index", "=", "temp_hourly", ".", "resample", "(", "'D'", ")", ".", "mean", "(", ")", ".", "index", "sun_times", "=", "melodist", ".", "util", ".", ...

38.47619

20.190476

def update(self, file_id, data): """ Update a file in the File Manager. :param file_id: The unique id for the File Manager file. :type file_id: :py:class:`str` :param data: The request body parameters :type data: :py:class:`dict` data = { "name": stri...

[ "def", "update", "(", "self", ",", "file_id", ",", "data", ")", ":", "self", ".", "file_id", "=", "file_id", "if", "'name'", "not", "in", "data", ":", "raise", "KeyError", "(", "'The file must have a name'", ")", "if", "'file_data'", "not", "in", "data", ...

34.421053

13.684211

def repository_get(name, local=False, hosts=None, profile=None): ''' .. versionadded:: 2017.7.0 Get existing repository details. name Repository name local Retrieve only local information, default is false CLI example:: salt myminion elasticsearch.repository_get testr...

[ "def", "repository_get", "(", "name", ",", "local", "=", "False", ",", "hosts", "=", "None", ",", "profile", "=", "None", ")", ":", "es", "=", "_get_instance", "(", "hosts", ",", "profile", ")", "try", ":", "return", "es", ".", "snapshot", ".", "get_...

29.73913

27.913043

def generate_vectored_io_stripe_metadata(local_path, metadata): # type: (blobxfer.models.upload.LocalPath, dict) -> dict """Generate vectored io stripe metadata dict :param blobxfer.models.upload.LocalPath local_path: local path :param dict metadata: existing metadata dict :rtype: dict :return: ...

[ "def", "generate_vectored_io_stripe_metadata", "(", "local_path", ",", "metadata", ")", ":", "# type: (blobxfer.models.upload.LocalPath, dict) -> dict", "md", "=", "{", "_JSON_KEY_VECTORED_IO", ":", "{", "_JSON_KEY_VECTORED_IO_MODE", ":", "_JSON_KEY_VECTORED_IO_STRIPE", ",", "_...

42.75

16.791667

def get_undecorated_callback(self): """ Return the callback. If the callback is a decorated function, try to recover the original function. """ func = self.callback func = getattr(func, '__func__' if py3k else 'im_func', func) closure_attr = '__closure__' if py3k else 'func_c...

[ "def", "get_undecorated_callback", "(", "self", ")", ":", "func", "=", "self", ".", "callback", "func", "=", "getattr", "(", "func", ",", "'__func__'", "if", "py3k", "else", "'im_func'", ",", "func", ")", "closure_attr", "=", "'__closure__'", "if", "py3k", ...

52.235294

18.705882

def get_logs(self, project, release_id, **kwargs): """GetLogs. [Preview API] Get logs for a release Id. :param str project: Project ID or project name :param int release_id: Id of the release. :rtype: object """ route_values = {} if project is not None: ...

[ "def", "get_logs", "(", "self", ",", "project", ",", "release_id", ",", "*", "*", "kwargs", ")", ":", "route_values", "=", "{", "}", "if", "project", "is", "not", "None", ":", "route_values", "[", "'project'", "]", "=", "self", ".", "_serialize", ".", ...

45.863636

16.863636

def load(filename): """Retrieve a pickled object Parameter --------- filename : path Return ------ object Unpickled object """ filename = os.path.normcase(filename) try: with open(filename, 'rb') as f: u = pickle.Unpickler(f) return u.loa...

[ "def", "load", "(", "filename", ")", ":", "filename", "=", "os", ".", "path", ".", "normcase", "(", "filename", ")", "try", ":", "with", "open", "(", "filename", ",", "'rb'", ")", "as", "f", ":", "u", "=", "pickle", ".", "Unpickler", "(", "f", ")...

21.052632

20.473684

def query_associations(self, subjects=None, infer_subjects=True, include_xrefs=True): """ Query for a set of associations. Note: only a minimal association model is stored, so all results are returned as (subject_id,class_id) tuples Arguments: subjects: list list o...

[ "def", "query_associations", "(", "self", ",", "subjects", "=", "None", ",", "infer_subjects", "=", "True", ",", "include_xrefs", "=", "True", ")", ":", "if", "subjects", "is", "None", ":", "subjects", "=", "[", "]", "mset", "=", "set", "(", ")", "if",...

37.26

25.54

def _update_font(self, textfont): """Updates text font widget Parameters ---------- textfont: String \tFont name """ try: fontface_id = self.fonts.index(textfont) except ValueError: fontface_id = 0 self.font_choice_comb...

[ "def", "_update_font", "(", "self", ",", "textfont", ")", ":", "try", ":", "fontface_id", "=", "self", ".", "fonts", ".", "index", "(", "textfont", ")", "except", "ValueError", ":", "fontface_id", "=", "0", "self", ".", "font_choice_combo", ".", "Select", ...

19.117647

21.470588

def magic(self, arg_s): """DEPRECATED. Use run_line_magic() instead. Call a magic function by name. Input: a string containing the name of the magic function to call and any additional arguments to be passed to the magic. magic('name -opt foo bar') is equivalent to typing at t...

[ "def", "magic", "(", "self", ",", "arg_s", ")", ":", "# TODO: should we issue a loud deprecation warning here?", "magic_name", ",", "_", ",", "magic_arg_s", "=", "arg_s", ".", "partition", "(", "' '", ")", "magic_name", "=", "magic_name", ".", "lstrip", "(", "pr...

37.913043

25

def get_group_permissions(self, user_obj, obj=None): """ Returns a set of permission strings that this user has through his/her groups. """ if user_obj.is_anonymous() or obj is not None: return set() if not hasattr(user_obj, '_group_perm_cache'): i...

[ "def", "get_group_permissions", "(", "self", ",", "user_obj", ",", "obj", "=", "None", ")", ":", "if", "user_obj", ".", "is_anonymous", "(", ")", "or", "obj", "is", "not", "None", ":", "return", "set", "(", ")", "if", "not", "hasattr", "(", "user_obj",...

53.941176

25.235294

def extended_arg_patterns(self): """Iterator over patterns for positional arguments to be matched This yields the elements of :attr:`args`, extended by their `mode` value """ for arg in self._arg_iterator(self.args): if isinstance(arg, Pattern): if ar...

[ "def", "extended_arg_patterns", "(", "self", ")", ":", "for", "arg", "in", "self", ".", "_arg_iterator", "(", "self", ".", "args", ")", ":", "if", "isinstance", "(", "arg", ",", "Pattern", ")", ":", "if", "arg", ".", "mode", ">", "self", ".", "single...

32.6

13.6

def parse_supybot_log(filepath): """Parse a Supybot IRC log file. The method parses the Supybot IRC log file and returns an iterator of dictionaries. Each one of this, contains a message from the file. :param filepath: path to the IRC log file :returns: a generator of parsed m...

[ "def", "parse_supybot_log", "(", "filepath", ")", ":", "with", "open", "(", "filepath", ",", "'r'", ",", "errors", "=", "'surrogateescape'", ",", "newline", "=", "os", ".", "linesep", ")", "as", "f", ":", "parser", "=", "SupybotParser", "(", "f", ")", ...

35.68

19.48

def load(source, **kwargs) -> JsonObj: """ Deserialize a JSON source. :param source: a URI, File name or a .read()-supporting file-like object containing a JSON document :param kwargs: arguments. see: json.load for details :return: JsonObj representing fp """ if isinstance(source, str): ...

[ "def", "load", "(", "source", ",", "*", "*", "kwargs", ")", "->", "JsonObj", ":", "if", "isinstance", "(", "source", ",", "str", ")", ":", "if", "'://'", "in", "source", ":", "req", "=", "Request", "(", "source", ")", "req", ".", "add_header", "(",...

35.954545

17

def split(self): """Split the phase. When a phase is exhausted, it gets split into a pair of phases to be further solved. The split happens like so: 1) Select the first unsolved package scope. 2) Find some common dependency in the first N variants of the scope. 3) Split ...

[ "def", "split", "(", "self", ")", ":", "assert", "(", "self", ".", "status", "==", "SolverStatus", ".", "exhausted", ")", "scopes", "=", "[", "]", "next_scopes", "=", "[", "]", "split_i", "=", "None", "for", "i", ",", "scope", "in", "enumerate", "(",...

34.072727

18.727273

def convert_to_human_readable(sdp): """Convert the SDP relaxation to a human-readable format. :param sdp: The SDP relaxation to write. :type sdp: :class:`ncpol2sdpa.sdp`. :returns: tuple of the objective function in a string and a matrix of strings as the symbolic representation of the mo...

[ "def", "convert_to_human_readable", "(", "sdp", ")", ":", "objective", "=", "\"\"", "indices_in_objective", "=", "[", "]", "for", "i", ",", "tmp", "in", "enumerate", "(", "sdp", ".", "obj_facvar", ")", ":", "candidates", "=", "[", "key", "for", "key", ",...

37.530303

15.318182

def _supported_baremetal_transaction(self, context): """Verify transaction is complete and for us.""" port = context.current if self.trunk.is_trunk_subport_baremetal(port): return self._baremetal_set_binding(context) if not nexus_help.is_baremetal(port): return...

[ "def", "_supported_baremetal_transaction", "(", "self", ",", "context", ")", ":", "port", "=", "context", ".", "current", "if", "self", ".", "trunk", ".", "is_trunk_subport_baremetal", "(", "port", ")", ":", "return", "self", ".", "_baremetal_set_binding", "(", ...

29.192308

20.538462

def _IncrementNestLevel(): """Increments the per thread nest level of imports.""" # This is the top call to import (no nesting), init the per-thread nest level # and names set. if getattr(_import_local, 'nest_level', None) is None: _import_local.nest_level = 0 if _import_local.nest_level == 0: # Re-i...

[ "def", "_IncrementNestLevel", "(", ")", ":", "# This is the top call to import (no nesting), init the per-thread nest level", "# and names set.", "if", "getattr", "(", "_import_local", ",", "'nest_level'", ",", "None", ")", "is", "None", ":", "_import_local", ".", "nest_lev...

36.384615

17.769231

def update_cdh_version(self, new_cdh_version): """ Manually set the CDH version. @param new_cdh_version: New CDH version, e.g. 4.5.1 @return: An ApiCluster object @since: API v6 """ dic = self.to_json_dict() dic['fullVersion'] = new_cdh_version return self._put_cluster(dic)

[ "def", "update_cdh_version", "(", "self", ",", "new_cdh_version", ")", ":", "dic", "=", "self", ".", "to_json_dict", "(", ")", "dic", "[", "'fullVersion'", "]", "=", "new_cdh_version", "return", "self", ".", "_put_cluster", "(", "dic", ")" ]

27.363636

10.454545

def to_satoshis(input_quantity, input_type): ''' convert to satoshis, no rounding ''' assert input_type in UNIT_CHOICES, input_type # convert to satoshis if input_type in ('btc', 'mbtc', 'bit'): satoshis = float(input_quantity) * float(UNIT_MAPPINGS[input_type]['satoshis_per']) elif input_t...

[ "def", "to_satoshis", "(", "input_quantity", ",", "input_type", ")", ":", "assert", "input_type", "in", "UNIT_CHOICES", ",", "input_type", "# convert to satoshis", "if", "input_type", "in", "(", "'btc'", ",", "'mbtc'", ",", "'bit'", ")", ":", "satoshis", "=", ...

35.307692

19.307692

def report_errors(audit, url): """ Args: audit: results of `AxeCoreAudit.do_audit()`. url: the url of the page being audited. Raises: `AccessibilityError` """ errors = AxeCoreAudit.get_errors(audit) if errors["total"] > 0: msg = u"URL...

[ "def", "report_errors", "(", "audit", ",", "url", ")", ":", "errors", "=", "AxeCoreAudit", ".", "get_errors", "(", "audit", ")", "if", "errors", "[", "\"total\"", "]", ">", "0", ":", "msg", "=", "u\"URL '{}' has {} errors:\\n\\n{}\"", ".", "format", "(", "...

30

15.176471

def ndef(self): """An :class:`NDEF` object if found, otherwise :const:`None`.""" if self._ndef is None: ndef = self.NDEF(self) if ndef.has_changed: self._ndef = ndef return self._ndef

[ "def", "ndef", "(", "self", ")", ":", "if", "self", ".", "_ndef", "is", "None", ":", "ndef", "=", "self", ".", "NDEF", "(", "self", ")", "if", "ndef", ".", "has_changed", ":", "self", ".", "_ndef", "=", "ndef", "return", "self", ".", "_ndef" ]

34.428571

10.142857

def file_generator(self, sql, sql_args): """Generator for FileRecord :param sql: A SQL statement which must return rows describing files. :param sql_args: Any variables required to populate the query provided in 'sql' :return: A generator which produc...

[ "def", "file_generator", "(", "self", ",", "sql", ",", "sql_args", ")", ":", "self", ".", "con", ".", "execute", "(", "sql", ",", "sql_args", ")", "results", "=", "self", ".", "con", ".", "fetchall", "(", ")", "output", "=", "[", "]", "for", "resul...

45.081081

24.459459

def get_dependencies(self, version=None): ''' Parameters ---------- version: str string representing version number whose dependencies you are looking up ''' version = _process_version(self, version) history = self.get_history() f...

[ "def", "get_dependencies", "(", "self", ",", "version", "=", "None", ")", ":", "version", "=", "_process_version", "(", "self", ",", "version", ")", "history", "=", "self", ".", "get_history", "(", ")", "for", "v", "in", "reversed", "(", "history", ")", ...

29.058824

20.705882

def showConfig( self ): """ Show the config widget for the currently selected plugin. """ item = self.uiPluginTREE.currentItem() if not isinstance(item, PluginItem): return plugin = item.plugin() widget = self.findChild(QWidget, plugin.uniqueN...

[ "def", "showConfig", "(", "self", ")", ":", "item", "=", "self", ".", "uiPluginTREE", ".", "currentItem", "(", ")", "if", "not", "isinstance", "(", "item", ",", "PluginItem", ")", ":", "return", "plugin", "=", "item", ".", "plugin", "(", ")", "widget",...

33

14.647059

def _EStep(self, K, x, z_h1, pi_h, p_h): """ Description: Internal function for computing the E-Step of the EMM algorithm. """ # E-Step: for i in range(self.n): for k in range(K): denom_sum = 0 for k2 in range(K): ...

[ "def", "_EStep", "(", "self", ",", "K", ",", "x", ",", "z_h1", ",", "pi_h", ",", "p_h", ")", ":", "# E-Step:", "for", "i", "in", "range", "(", "self", ".", "n", ")", ":", "for", "k", "in", "range", "(", "K", ")", ":", "denom_sum", "=", "0", ...

38.833333

16.666667

def mock(self, slot, rpc_id, value): """Store a mock return value for an RPC Args: slot (SlotIdentifier): The slot we are mocking rpc_id (int): The rpc we are mocking value (int): The value that should be returned when the RPC is called. """ ...

[ "def", "mock", "(", "self", ",", "slot", ",", "rpc_id", ",", "value", ")", ":", "address", "=", "slot", ".", "address", "if", "address", "not", "in", "self", ".", "mock_rpcs", ":", "self", ".", "mock_rpcs", "[", "address", "]", "=", "{", "}", "self...

29.25

15.875

def run(self, data_service, project_file): """ Attach a remote file to activity with used relationship. :param data_service: DataServiceApi: service used to attach relationship :param project_file: ProjectFile: contains details about a file we will attach """ remote_path ...

[ "def", "run", "(", "self", ",", "data_service", ",", "project_file", ")", ":", "remote_path", "=", "project_file", ".", "path", "file_dict", "=", "data_service", ".", "get_file", "(", "project_file", ".", "id", ")", ".", "json", "(", ")", "file_version_id", ...

57.818182

23.272727

def dimension_values(self, dim, expanded=True, flat=True): """ The set of samples available along a particular dimension. """ dim_idx = self.get_dimension_index(dim) if not expanded and dim_idx == 0: return np.array(range(self.data.shape[1])) elif not expanded...

[ "def", "dimension_values", "(", "self", ",", "dim", ",", "expanded", "=", "True", ",", "flat", "=", "True", ")", ":", "dim_idx", "=", "self", ".", "get_dimension_index", "(", "dim", ")", "if", "not", "expanded", "and", "dim_idx", "==", "0", ":", "retur...

42.941176

13.529412

def _rm_units_from_var_name_single(var): """ NOTE: USE THIS FOR SINGLE CELLS ONLY When parsing sheets, all variable names be exact matches when cross-referenceing the metadata and data sections However, sometimes people like to put "age (years BP)" in one section, and "age" in the other. This causes pro...

[ "def", "_rm_units_from_var_name_single", "(", "var", ")", ":", "# Use the regex to match the cell", "m", "=", "re", ".", "match", "(", "re_var_w_units", ",", "var", ")", "# Should always get a match, but be careful anyways.", "if", "m", ":", "# m.group(1): variableName", ...

45.956522

22.130435

def user_stars(self, user_id, extra_query_params={}): """ client = BacklogClient("your_space_name", "your_api_key") client.user_stars(5) client.user_stars(5, {"count": 100, "order": "asc"}) """ return self.do("GET", "users/{user_id}/stars", url_para...

[ "def", "user_stars", "(", "self", ",", "user_id", ",", "extra_query_params", "=", "{", "}", ")", ":", "return", "self", ".", "do", "(", "\"GET\"", ",", "\"users/{user_id}/stars\"", ",", "url_params", "=", "{", "\"user_id\"", ":", "user_id", "}", ",", "quer...

43.555556

12.666667

def update_line(self, trace, xdata, ydata, side='left', draw=False, update_limits=True): """ update a single trace, for faster redraw """ x = self.conf.get_mpl_line(trace) x.set_data(xdata, ydata) datarange = [xdata.min(), xdata.max(), ydata.min(), ydata.max()] ...

[ "def", "update_line", "(", "self", ",", "trace", ",", "xdata", ",", "ydata", ",", "side", "=", "'left'", ",", "draw", "=", "False", ",", "update_limits", "=", "True", ")", ":", "x", "=", "self", ".", "conf", ".", "get_mpl_line", "(", "trace", ")", ...

34.8125

16.3125

def location_from_dictionary(d): """ Builds a *Location* object out of a data dictionary. Only certain properties of the dictionary are used: if these properties are not found or cannot be read, an error is issued. :param d: a data dictionary :type d: dict :returns: a *Location* instance ...

[ "def", "location_from_dictionary", "(", "d", ")", ":", "country", "=", "None", "if", "'sys'", "in", "d", "and", "'country'", "in", "d", "[", "'sys'", "]", ":", "country", "=", "d", "[", "'sys'", "]", "[", "'country'", "]", "if", "'city'", "in", "d", ...

31.204545

17.022727

def run(self, N=100): """ Parameter --------- N: int number of particles Returns ------- wgts: Weights object The importance weights (with attributes lw, W, and ESS) X: ThetaParticles object The N particles (wi...

[ "def", "run", "(", "self", ",", "N", "=", "100", ")", ":", "th", "=", "self", ".", "proposal", ".", "rvs", "(", "size", "=", "N", ")", "self", ".", "X", "=", "ThetaParticles", "(", "theta", "=", "th", ",", "lpost", "=", "None", ")", "self", "...

30.434783

15.913043

def list_consumer_group(self, project, logstore): """ List consumer group :type project: string :param project: project name :type logstore: string :param logstore: logstore name :return: ListConsumerGroupResponse """ resource = "/logstores...

[ "def", "list_consumer_group", "(", "self", ",", "project", ",", "logstore", ")", ":", "resource", "=", "\"/logstores/\"", "+", "logstore", "+", "\"/consumergroups\"", "params", "=", "{", "}", "headers", "=", "{", "}", "(", "resp", ",", "header", ")", "=", ...

29.055556

19.611111

def push_0(self, build_record_id, **kwargs): """ Build record push results. This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please define a `callback` function to be invoked when receiving the response. >>> def callb...

[ "def", "push_0", "(", "self", ",", "build_record_id", ",", "*", "*", "kwargs", ")", ":", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'callback'", ")", ":", "return", "self", ".", "push_0_with_http_info", "...

40.769231

17.230769

def getRenderModelOriginalPath(self, pchRenderModelName, pchOriginalPath, unOriginalPathLen): """ Provides a render model path that will load the unskinned model if the model name provided has been replace by the user. If the model hasn't been replaced the path value will still be a valid path t...

[ "def", "getRenderModelOriginalPath", "(", "self", ",", "pchRenderModelName", ",", "pchOriginalPath", ",", "unOriginalPathLen", ")", ":", "fn", "=", "self", ".", "function_table", ".", "getRenderModelOriginalPath", "peError", "=", "EVRRenderModelError", "(", ")", "resu...

57.363636

36.636364

def GetRegion(region_name): """ Converts region name string into boto Region object. """ regions = boto_ec2.regions() region = None valid_region_names = [] for r in regions: valid_region_names.append(r.name) if r.name == region_name: region = r break if not region: logging.info( ...

[ "def", "GetRegion", "(", "region_name", ")", ":", "regions", "=", "boto_ec2", ".", "regions", "(", ")", "region", "=", "None", "valid_region_names", "=", "[", "]", "for", "r", "in", "regions", ":", "valid_region_names", ".", "append", "(", "r", ".", "nam...

30.8

18.4

def _do_save_as(self, filename): """Saves spectrum back to FITS file.""" if len(self.spectrum.x) < 2: raise RuntimeError("Spectrum must have at least two points") if os.path.isfile(filename): os.unlink(filename) # PyFITS does not overwrite file hdu = self.spect...

[ "def", "_do_save_as", "(", "self", ",", "filename", ")", ":", "if", "len", "(", "self", ".", "spectrum", ".", "x", ")", "<", "2", ":", "raise", "RuntimeError", "(", "\"Spectrum must have at least two points\"", ")", "if", "os", ".", "path", ".", "isfile", ...

36.1

16

def file_md5(file_name): ''' Generate an MD5 hash of the specified file. @file_name - The file to hash. Returns an MD5 hex digest string. ''' md5 = hashlib.md5() with open(file_name, 'rb') as f: for chunk in iter(lambda: f.read(128 * md5.block_size), b''): md5.update(c...

[ "def", "file_md5", "(", "file_name", ")", ":", "md5", "=", "hashlib", ".", "md5", "(", ")", "with", "open", "(", "file_name", ",", "'rb'", ")", "as", "f", ":", "for", "chunk", "in", "iter", "(", "lambda", ":", "f", ".", "read", "(", "128", "*", ...

22.6

22.2

def _get_reference(self): """ Sets up references to important components. A reference is typically an index or a list of indices that point to the corresponding elements in a flattened array, which is how MuJoCo stores physical simulation data. """ super()._get_reference(...

[ "def", "_get_reference", "(", "self", ")", ":", "super", "(", ")", ".", "_get_reference", "(", ")", "self", ".", "hole_body_id", "=", "self", ".", "sim", ".", "model", ".", "body_name2id", "(", "\"hole\"", ")", "self", ".", "cyl_body_id", "=", "self", ...

49.333333

20.888889

def insert(self, iterable, data=None, weight=1.0): """Used to insert into he root node Args iterable(hashable): index or key used to identify data(object): data to be paired with the key """ self.root.insert(iterable, index=0, data=data, weight=1.0)

[ "def", "insert", "(", "self", ",", "iterable", ",", "data", "=", "None", ",", "weight", "=", "1.0", ")", ":", "self", ".", "root", ".", "insert", "(", "iterable", ",", "index", "=", "0", ",", "data", "=", "data", ",", "weight", "=", "1.0", ")" ]

37.375

17.625