kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def calc_qdgz1_qdgz2_v1(self): """Seperate total direct flow into a small and a fast component. Required control parameters: \|A1\| \|A2\| Required flux sequence: \|QDGZ\| Calculated state sequences: \|QDGZ1\| \|QDGZ2\| Basic equation: :math:`QDGZ2 = \\frac{(QDGZ-A2)^2...	[ "def", "calc_qdgz1_qdgz2_v1", "(", "self", ")", ":", "con", "=", "self", ".", "parameters", ".", "control", ".", "fastaccess", "flu", "=", "self", ".", "sequences", ".", "fluxes", ".", "fastaccess", "sta", "=", "self", ".", "sequences", ".", "states", "....	34.158879	18.672897
def get_env_macros(self, data): """Get all environment macros from data For each object in data :: * Fetch all macros in object.__class__.macros * Fetch all customs macros in o.custom :param data: data to get macro :type data: :return: dict with macro name as ke...	[ "def", "get_env_macros", "(", "self", ",", "data", ")", ":", "env", "=", "{", "}", "for", "obj", "in", "data", ":", "cls", "=", "obj", ".", "__class__", "macros", "=", "cls", ".", "macros", "for", "macro", "in", "macros", ":", "if", "macro", ".", ...	35.121212	17.787879
def count_list(the_list): """ Generates a count of the number of times each unique item appears in a list """ count = the_list.count result = [(item, count(item)) for item in set(the_list)] result.sort() return result	[ "def", "count_list", "(", "the_list", ")", ":", "count", "=", "the_list", ".", "count", "result", "=", "[", "(", "item", ",", "count", "(", "item", ")", ")", "for", "item", "in", "set", "(", "the_list", ")", "]", "result", ".", "sort", "(", ")", ...	29.75	16.75
def send(self, cmd): """ Send a command to the bridge. :param cmd: List of command bytes. """ self._bridge.send(cmd, wait=self.wait, reps=self.reps)	[ "def", "send", "(", "self", ",", "cmd", ")", ":", "self", ".", "_bridge", ".", "send", "(", "cmd", ",", "wait", "=", "self", ".", "wait", ",", "reps", "=", "self", ".", "reps", ")" ]	29.333333	14
def _copy_selection(self, *event): """Copies the current selection to the clipboard. """ if react_to_event(self.view, self.view.editor, event): logger.debug("copy selection") global_clipboard.copy(self.model.selection) return True	[ "def", "_copy_selection", "(", "self", ",", "*", "event", ")", ":", "if", "react_to_event", "(", "self", ".", "view", ",", "self", ".", "view", ".", "editor", ",", "event", ")", ":", "logger", ".", "debug", "(", "\"copy selection\"", ")", "global_clipboa...	40.571429	8.857143
def when_children_replaced ( self, object, listener, remove ): """ Sets up or removes a listener for children being replaced on a specified object. """ object.on_trait_change( listener, "subgraphs", remove = remove, dispatch = "fast_ui" ) objec...	[ "def", "when_children_replaced", "(", "self", ",", "object", ",", "listener", ",", "remove", ")", ":", "object", ".", "on_trait_change", "(", "listener", ",", "\"subgraphs\"", ",", "remove", "=", "remove", ",", "dispatch", "=", "\"fast_ui\"", ")", "object", ...	55.583333	17
def show_periodical_tree_by_issn(issn): """ Render tree using ISSN. """ trees = tree_handler().trees_by_issn(issn) if not trees: abort(404, "Dokument s ISSN '%s' není dostupný." % issn) return render_trees( trees, partial(web_tools.compose_tree_path, issn=True) )	[ "def", "show_periodical_tree_by_issn", "(", "issn", ")", ":", "trees", "=", "tree_handler", "(", ")", ".", "trees_by_issn", "(", "issn", ")", "if", "not", "trees", ":", "abort", "(", "404", ",", "\"Dokument s ISSN '%s' není dostupný.\" %", "i", "sn)", "", "ret...	23.461538	18.384615
def _split(self, split_cls, editor_buffer=None): """ Split horizontal or vertical. (when editor_buffer is None, show the current buffer there as well.) """ if editor_buffer is None: editor_buffer = self.active_window.editor_buffer active_split = self._get_act...	[ "def", "_split", "(", "self", ",", "split_cls", ",", "editor_buffer", "=", "None", ")", ":", "if", "editor_buffer", "is", "None", ":", "editor_buffer", "=", "self", ".", "active_window", ".", "editor_buffer", "active_split", "=", "self", ".", "_get_active_spli...	36.238095	15.285714
def get_composition_search_session(self, proxy): """Gets a composition search session. arg proxy (osid.proxy.Proxy): a proxy return: (osid.repository.CompositionSearchSession) - a CompositionSearchSession raise: OperationFailed - unable to complete request r...	[ "def", "get_composition_search_session", "(", "self", ",", "proxy", ")", ":", "if", "not", "self", ".", "supports_composition_search", "(", ")", ":", "raise", "Unimplemented", "(", ")", "try", ":", "from", ".", "import", "sessions", "except", "ImportError", ":...	38.791667	15.958333
def setSample(self, sample): """Set sample points from the population. Should be a RDD""" if not isinstance(sample, RDD): raise TypeError("samples should be a RDD, received %s" % type(sample)) self._sample = sample	[ "def", "setSample", "(", "self", ",", "sample", ")", ":", "if", "not", "isinstance", "(", "sample", ",", "RDD", ")", ":", "raise", "TypeError", "(", "\"samples should be a RDD, received %s\"", "%", "type", "(", "sample", ")", ")", "self", ".", "_sample", "...	49.2	13.2
def novatel_diag_send(self, timeStatus, receiverStatus, solStatus, posType, velType, posSolAge, csFails, force_mavlink1=False): ''' Transmits the diagnostics data from the Novatel OEMStar GPS timeStatus : The Time Status. See Table 8 page 27 Novatel OEMSta...	[ "def", "novatel_diag_send", "(", "self", ",", "timeStatus", ",", "receiverStatus", ",", "solStatus", ",", "posType", ",", "velType", ",", "posSolAge", ",", "csFails", ",", "force_mavlink1", "=", "False", ")", ":", "return", "self", ".", "send", "(", "self", ...	77.714286	55.142857
def get_column_cursor_position(self, column): """ Return the relative cursor position for this column at the current line. (It will stay between the boundaries of the line in case of a larger number.) """ line_length = len(self.current_line) current_column = self....	[ "def", "get_column_cursor_position", "(", "self", ",", "column", ")", ":", "line_length", "=", "len", "(", "self", ".", "current_line", ")", "current_column", "=", "self", ".", "cursor_position_col", "column", "=", "max", "(", "0", ",", "min", "(", "line_len...	38.090909	14.090909
def contains_point( self, x, y ): """Is the point (x,y) on this curve?""" return ( y * y - ( x * x * x + self.__a * x + self.__b ) ) % self.__p == 0	[ "def", "contains_point", "(", "self", ",", "x", ",", "y", ")", ":", "return", "(", "y", "", "y", "-", "(", "x", "", "x", "", "x", "+", "self", ".", "__a", "", "x", "+", "self", ".", "__b", ")", ")", "%", "self", ".", "__p", "==", "0" ...	51.333333	15
def to_json(self): """Returns an input shard state for the remaining inputs. Returns: A JSON serializable version of the remaining input to read. """ params = dict(self.__params) # Shallow copy. if self._PROTOTYPE_REQUEST_PARAM in params: prototype_request = params[self._PROTOTYPE_REQ...	[ "def", "to_json", "(", "self", ")", ":", "params", "=", "dict", "(", "self", ".", "__params", ")", "# Shallow copy.", "if", "self", ".", "_PROTOTYPE_REQUEST_PARAM", "in", "params", ":", "prototype_request", "=", "params", "[", "self", ".", "_PROTOTYPE_REQUEST_...	37.571429	20.857143
def do_chan_log_all(self, line): """Set the channel log level to ALL_COMMS. Command syntax is: chan_log_all""" self.application.channel.SetLogFilters(openpal.LogFilters(opendnp3.levels.ALL_COMMS)) print('Channel log filtering level is now: {0}'.format(opendnp3.levels.ALL_COMMS))	[ "def", "do_chan_log_all", "(", "self", ",", "line", ")", ":", "self", ".", "application", ".", "channel", ".", "SetLogFilters", "(", "openpal", ".", "LogFilters", "(", "opendnp3", ".", "levels", ".", "ALL_COMMS", ")", ")", "print", "(", "'Channel log filteri...	75	27.75
def evolved_transformer_big_tpu(): """Big parameters for Evolved Transformer model on TPU.""" hparams = add_evolved_transformer_hparams(transformer.transformer_big_tpu()) hparams.learning_rate_constant = 1 / hparams.learning_rate_warmup_steps ** 0.5 hparams.learning_rate_schedule = ( "constant*single_cycl...	[ "def", "evolved_transformer_big_tpu", "(", ")", ":", "hparams", "=", "add_evolved_transformer_hparams", "(", "transformer", ".", "transformer_big_tpu", "(", ")", ")", "hparams", ".", "learning_rate_constant", "=", "1", "/", "hparams", ".", "learning_rate_warmup_steps", ...	49.142857	16
def acquire(self, blocking=True, delay=DELAY_INCREMENT, max_delay=MAX_DELAY, timeout=None): """Attempt to acquire the given lock. :param blocking: whether to wait forever to try to acquire the lock :type blocking: bool :param delay: when blocking this is ...	[ "def", "acquire", "(", "self", ",", "blocking", "=", "True", ",", "delay", "=", "DELAY_INCREMENT", ",", "max_delay", "=", "MAX_DELAY", ",", "timeout", "=", "None", ")", ":", "if", "delay", "<", "0", ":", "raise", "ValueError", "(", "\"Delay must be greater...	42.928571	17.214286
def expire_at(self, key, _time): """ Sets the expiration time of @key to @_time @_time: absolute Unix timestamp (seconds since January 1, 1970) """ return self._client.expireat(self.get_key(key), round(_time))	[ "def", "expire_at", "(", "self", ",", "key", ",", "_time", ")", ":", "return", "self", ".", "_client", ".", "expireat", "(", "self", ".", "get_key", "(", "key", ")", ",", "round", "(", "_time", ")", ")" ]	48.2	14.4
def merge_versioned(releases, schema=None, merge_rules=None): """ Merges a list of releases into a versionedRelease. """ if not merge_rules: merge_rules = get_merge_rules(schema) merged = OrderedDict() for release in sorted(releases, key=lambda release: release['date']): release...	[ "def", "merge_versioned", "(", "releases", ",", "schema", "=", "None", ",", "merge_rules", "=", "None", ")", ":", "if", "not", "merge_rules", ":", "merge_rules", "=", "get_merge_rules", "(", "schema", ")", "merged", "=", "OrderedDict", "(", ")", "for", "re...	30.564103	16.25641
def resize(self, size:Union[int,TensorImageSize])->'Image': "Resize the image to `size`, size can be a single int." assert self._flow is None if isinstance(size, int): size=(self.shape[0], size, size) if tuple(size)==tuple(self.shape): return self self.flow = _affine_grid(size) ...	[ "def", "resize", "(", "self", ",", "size", ":", "Union", "[", "int", ",", "TensorImageSize", "]", ")", "->", "'Image'", ":", "assert", "self", ".", "_flow", "is", "None", "if", "isinstance", "(", "size", ",", "int", ")", ":", "size", "=", "(", "sel...	47.428571	16
def _check_roSet(orb,kwargs,funcName): """Function to check whether ro is set, because it's required for funcName""" if not orb._roSet and kwargs.get('ro',None) is None: warnings.warn("Method %s(.) requires ro to be given at Orbit initialization or at method evaluation; using default ro which is %f kpc"...	[ "def", "_check_roSet", "(", "orb", ",", "kwargs", ",", "funcName", ")", ":", "if", "not", "orb", ".", "_roSet", "and", "kwargs", ".", "get", "(", "'ro'", ",", "None", ")", "is", "None", ":", "warnings", ".", "warn", "(", "\"Method %s(.) requires ro to be...	74.8	29.4
def wasb_read(self, remote_log_location, return_error=False): """ Returns the log found at the remote_log_location. Returns '' if no logs are found or there is an error. :param remote_log_location: the log's location in remote storage :type remote_log_location: str (path) ...	[ "def", "wasb_read", "(", "self", ",", "remote_log_location", ",", "return_error", "=", "False", ")", ":", "try", ":", "return", "self", ".", "hook", ".", "read_file", "(", "self", ".", "wasb_container", ",", "remote_log_location", ")", "except", "AzureHttpErro...	45.222222	17.444444
def cross_validation(learner, dataset, k=10, trials=1): """Do k-fold cross_validate and return their mean. That is, keep out 1/k of the examples for testing on each of k runs. Shuffle the examples first; If trials>1, average over several shuffles.""" if k is None: k = len(dataset.examples) i...	[ "def", "cross_validation", "(", "learner", ",", "dataset", ",", "k", "=", "10", ",", "trials", "=", "1", ")", ":", "if", "k", "is", "None", ":", "k", "=", "len", "(", "dataset", ".", "examples", ")", "if", "trials", ">", "1", ":", "return", "mean...	45.5	14.642857
async def uvarint(self, elem): """ Uvarint untouched :param elem: :return: """ if self.writing: return await dump_varint(self.iobj, elem) else: return await load_varint(self.iobj)	[ "async", "def", "uvarint", "(", "self", ",", "elem", ")", ":", "if", "self", ".", "writing", ":", "return", "await", "dump_varint", "(", "self", ".", "iobj", ",", "elem", ")", "else", ":", "return", "await", "load_varint", "(", "self", ".", "iobj", "...	25	13.2
def build_upstream_edge_predicate(nodes: Iterable[BaseEntity]) -> EdgePredicate: """Build an edge predicate that pass for relations for which one of the given nodes is the object.""" nodes = set(nodes) def upstream_filter(graph: BELGraph, u: BaseEntity, v: BaseEntity, k: str) -> bool: """Pass for r...	[ "def", "build_upstream_edge_predicate", "(", "nodes", ":", "Iterable", "[", "BaseEntity", "]", ")", "->", "EdgePredicate", ":", "nodes", "=", "set", "(", "nodes", ")", "def", "upstream_filter", "(", "graph", ":", "BELGraph", ",", "u", ":", "BaseEntity", ",",...	52.666667	25.888889
def spline_interpolate(x_axis, y_axis, x_new_axis): """Interpolate a y = f(x) function using Spline interpolation algorithm, x_new_axis has to be in range of x_axis. `Spline interpolation <https://en.wikipedia.org/wiki/Spline_interpolation>`_ is a popular interpolation method. Way more accurate than l...	[ "def", "spline_interpolate", "(", "x_axis", ",", "y_axis", ",", "x_new_axis", ")", ":", "f", "=", "interp1d", "(", "x_axis", ",", "y_axis", ",", "kind", "=", "\"cubic\"", ")", "return", "f", "(", "x_new_axis", ")" ]	42.3	18.3
def main(argString=None): """The main function of this module. :param argString: the options. :type argString: list These are the steps: 1. Runs a plate bias analysis using Plink (:py:func:`executePlateBiasAnalysis`). 2. Extracts the list of significant markers after plate bias analys...	[ "def", "main", "(", "argString", "=", "None", ")", ":", "# Getting and checking the options", "args", "=", "parseArgs", "(", "argString", ")", "checkArgs", "(", "args", ")", "logger", ".", "info", "(", "\"Options used:\"", ")", "for", "key", ",", "value", "i...	31	18.725
def rem_active_module(module): '''Remove a module from CPENV_ACTIVE_MODULES environment variable''' modules = set(get_active_modules()) modules.discard(module) new_modules_path = os.pathsep.join([m.path for m in modules]) os.environ['CPENV_ACTIVE_MODULES'] = str(new_modules_path)	[ "def", "rem_active_module", "(", "module", ")", ":", "modules", "=", "set", "(", "get_active_modules", "(", ")", ")", "modules", ".", "discard", "(", "module", ")", "new_modules_path", "=", "os", ".", "pathsep", ".", "join", "(", "[", "m", ".", "path", ...	42.142857	20.428571
def img_from_vgg(x): '''Decondition an image from the VGG16 model.''' x = x.transpose((1, 2, 0)) x[:, :, 0] += 103.939 x[:, :, 1] += 116.779 x[:, :, 2] += 123.68 x = x[:,:,::-1] # to RGB return x	[ "def", "img_from_vgg", "(", "x", ")", ":", "x", "=", "x", ".", "transpose", "(", "(", "1", ",", "2", ",", "0", ")", ")", "x", "[", ":", ",", ":", ",", "0", "]", "+=", "103.939", "x", "[", ":", ",", ":", ",", "1", "]", "+=", "116.779", "...	27.125	15.875
def get_library_mapping(logger, prod_folder, token, host): """ returns a pair of library mappings, the first mapping library uri to a library name for all libraries in the production folder, and the second mapping library name to info for libraries in the production folder with parsable versions ...	[ "def", "get_library_mapping", "(", "logger", ",", "prod_folder", ",", "token", ",", "host", ")", ":", "res", "=", "requests", ".", "get", "(", "host", "+", "'/api/1.2/libraries/list'", ",", "auth", "=", "(", "'token'", ",", "token", ")", ",", ")", "if", ...	37.611111	16.833333
def render_impl(self, template, context, **opts): """ Render given template file and return the result. :param template: Template file path :param context: A dict or dict-like object to instantiate given template file :param opts: Options such as: - at_pa...	[ "def", "render_impl", "(", "self", ",", "template", ",", "context", ",", "", "", "opts", ")", ":", "return", "self", ".", "_render", "(", "os", ".", "path", ".", "basename", "(", "template", ")", ",", "context", ",", "True", ",", "", "", "opts"...	42.058824	17.941176
def web(port, debug=False, theme="modern", ssh_config=None): """Starts the web UI.""" from storm import web as _web _web.run(port, debug, theme, ssh_config)	[ "def", "web", "(", "port", ",", "debug", "=", "False", ",", "theme", "=", "\"modern\"", ",", "ssh_config", "=", "None", ")", ":", "from", "storm", "import", "web", "as", "_web", "_web", ".", "run", "(", "port", ",", "debug", ",", "theme", ",", "ssh...	41.25	7.75
def apply_optimization(self, update_embedding_with, grad, **kwargs): """ Calculating (Obtaining) the learning rate (eta) and apply optimizations on the embedding states by the specified method. Parameters ---------- update_embedding_with : function Function u...	[ "def", "apply_optimization", "(", "self", ",", "update_embedding_with", ",", "grad", ",", "", "", "kwargs", ")", ":", "if", "self", ".", "linesearch", ":", "return", "self", ".", "_apply_linesearch_optimzation", "(", "update_embedding_with", ",", "grad", ",", ...	40.962963	23.037037
def write(url, content, **args): """Put an object into a ftp URL.""" relay = urlparse.urlparse(args.pop('relay', 'lmtp://localhot')) try: smtplib_SMTPS = functools.partial(smtplib.SMTP_SSL, keyfile=args.pop('keyfile', None), ...	[ "def", "write", "(", "url", ",", "content", ",", "", "", "args", ")", ":", "relay", "=", "urlparse", ".", "urlparse", "(", "args", ".", "pop", "(", "'relay'", ",", "'lmtp://localhot'", ")", ")", "try", ":", "smtplib_SMTPS", "=", "functools", ".", "...	44.288889	17.555556
def _get_item(self, question_id): """we need a middle-man method to convert the unique "assessment-session" authority question_ids into "real" itemIds BUT this also has to return the "magic" item, so we can't rely on question = self.get_question(question_id) ...	[ "def", "_get_item", "(", "self", ",", "question_id", ")", ":", "question_map", "=", "self", ".", "_get_question_map", "(", "question_id", ")", "# Throws NotFound()", "real_question_id", "=", "Id", "(", "question_map", "[", "'questionId'", "]", ")", "return", "se...	53.75	18.916667
def bulk_copy(self, ids): """Bulk copy a set of results. :param ids: Int list of result IDs. :return: :class:`results.Result <results.Result>` list """ schema = ResultSchema() return self.service.bulk_copy(self.base, self.RESOURCE, ids, schema)	[ "def", "bulk_copy", "(", "self", ",", "ids", ")", ":", "schema", "=", "ResultSchema", "(", ")", "return", "self", ".", "service", ".", "bulk_copy", "(", "self", ".", "base", ",", "self", ".", "RESOURCE", ",", "ids", ",", "schema", ")" ]	35.75	15.625
def is_in_virtualenv(): """ Check virtualenv membership dynamically :return: True or false depending on whether we are in a regular virtualenv or not :rtype: bool """ pipenv_active = os.environ.get("PIPENV_ACTIVE", False) virtual_env = None use_system = False ignore_virtualenvs = b...	[ "def", "is_in_virtualenv", "(", ")", ":", "pipenv_active", "=", "os", ".", "environ", ".", "get", "(", "\"PIPENV_ACTIVE\"", ",", "False", ")", "virtual_env", "=", "None", "use_system", "=", "False", "ignore_virtualenvs", "=", "bool", "(", "os", ".", "environ...	34.647059	21.941176
def GetStoredHostname(self): """Retrieves the stored hostname. The hostname is determined based on the preprocessing information that is stored inside the storage file. Returns: str: hostname. """ store_number = len(self._hostnames) return self._hostnames.get(store_number, None)	[ "def", "GetStoredHostname", "(", "self", ")", ":", "store_number", "=", "len", "(", "self", ".", "_hostnames", ")", "return", "self", ".", "_hostnames", ".", "get", "(", "store_number", ",", "None", ")" ]	27.727273	16.636364
def floor(x, context=None): """ Return the next lower or equal integer to x. If the result is not exactly representable, it will be rounded according to the current context. Note that it's possible for the result to be larger than ``x``. See the documentation of the :func:`ceil` function for ...	[ "def", "floor", "(", "x", ",", "context", "=", "None", ")", ":", "return", "_apply_function_in_current_context", "(", "BigFloat", ",", "mpfr", ".", "mpfr_rint_floor", ",", "(", "BigFloat", ".", "_implicit_convert", "(", "x", ")", ",", ")", ",", "context", ...	27.545455	23.272727
def renames(from_path, to_path, user=None): """ Rename ``from_path`` to ``to_path``, creating parents as needed. """ to_dir = path.dirname(to_path) if to_dir: mkdir(to_dir, user=user) rename(from_path, to_path, user=user)	[ "def", "renames", "(", "from_path", ",", "to_path", ",", "user", "=", "None", ")", ":", "to_dir", "=", "path", ".", "dirname", "(", "to_path", ")", "if", "to_dir", ":", "mkdir", "(", "to_dir", ",", "user", "=", "user", ")", "rename", "(", "from_path"...	30.75	9
def to_bqm(self, model): """Given a pysmt model, return a bqm. Adds the values of the biases as determined by the SMT solver to a bqm. Args: model: A pysmt model. Returns: :obj:`dimod.BinaryQuadraticModel` """ linear = ((v, float(model.get_py_v...	[ "def", "to_bqm", "(", "self", ",", "model", ")", ":", "linear", "=", "(", "(", "v", ",", "float", "(", "model", ".", "get_py_value", "(", "bias", ")", ")", ")", "for", "v", ",", "bias", "in", "self", ".", "linear", ".", "items", "(", ")", ")", ...	33.263158	23.368421
def fai_from_bam(ref_file, bam_file, out_file, data): """Create a fai index with only contigs in the input BAM file. """ contigs = set([x.contig for x in idxstats(bam_file, data)]) if not utils.file_uptodate(out_file, bam_file): with open(ref.fasta_idx(ref_file, data["config"])) as in_handle: ...	[ "def", "fai_from_bam", "(", "ref_file", ",", "bam_file", ",", "out_file", ",", "data", ")", ":", "contigs", "=", "set", "(", "[", "x", ".", "contig", "for", "x", "in", "idxstats", "(", "bam_file", ",", "data", ")", "]", ")", "if", "not", "utils", "...	52.166667	16.25
def add_group(data_api, data_setters, group_index): """Add the data for a whole group. :param data_api the data api from where to get the data :param data_setters the class to push the data to :param group_index the index for this group""" group_type_ind = data_api.group_type_list[group_index] a...	[ "def", "add_group", "(", "data_api", ",", "data_setters", ",", "group_index", ")", ":", "group_type_ind", "=", "data_api", ".", "group_type_list", "[", "group_index", "]", "atom_count", "=", "len", "(", "data_api", ".", "group_list", "[", "group_type_ind", "]", ...	60.192308	22.653846
def _split_cell(cell, module): """ Split a hybrid %%sql cell into the Python code and the queries. Populates a module with the queries. Args: cell: the contents of the %%sql cell. module: the module that the contents will populate. Returns: The default (last) query for the module. """ line...	[ "def", "_split_cell", "(", "cell", ",", "module", ")", ":", "lines", "=", "cell", ".", "split", "(", "'\\n'", ")", "code", "=", "None", "last_def", "=", "-", "1", "name", "=", "None", "define_wild_re", "=", "re", ".", "compile", "(", "'^DEFINE\\s+.*$'"...	39.809524	24.261905
def _redis_notifier(state): """Notify of configuration update through redis. Arguments: state (_WaffleState): Object that contains reference to app and its configstore. """ tstamp = time.time() state._tstamp = tstamp conf = state.app.config # Notify timestamp r = re...	[ "def", "_redis_notifier", "(", "state", ")", ":", "tstamp", "=", "time", ".", "time", "(", ")", "state", ".", "_tstamp", "=", "tstamp", "conf", "=", "state", ".", "app", ".", "config", "# Notify timestamp", "r", "=", "redis", ".", "client", ".", "Stric...	28.642857	19
def main(command_line=True, **kwargs): """ NAME jr6_jr6_magic.py DESCRIPTION converts JR6 .jr6 format files to magic_measurements format files SYNTAX jr6_jr6_magic.py [command line options] OPTIONS -h: prints the help message and quits. -f FILE: specify i...	[ "def", "main", "(", "command_line", "=", "True", ",", "", "", "kwargs", ")", ":", "# initialize some stuff", "noave", "=", "0", "#volume=2.5*3 #default volume is a 2.5cm cube", "volume", "=", "2.5", "", "1e-6", "#default volume is a 2.5 cm cube, translated to meters c...	40.420863	20.471223
def sql_datetime_literal(dt: DateTimeLikeType, subsecond: bool = False) -> str: """ Transforms a Python object that is of duck type ``datetime.datetime`` into an ANSI SQL literal string, like ``'2000-12-31 23:59:59'``, or if ``subsecond=True``, into the (non-ANSI) format ``'...	[ "def", "sql_datetime_literal", "(", "dt", ":", "DateTimeLikeType", ",", "subsecond", ":", "bool", "=", "False", ")", "->", "str", ":", "# ANSI SQL: http://www.contrib.andrew.cmu.edu/~shadow/sql/sql1992.txt", "# <timestamp string>", "# ... the subsecond part is non-ANSI", "fmt",...	45.692308	15.230769
def _compute_edges(self): """Compute the edges of the current surface. Returns: Tuple[~curve.Curve, ~curve.Curve, ~curve.Curve]: The edges of the surface. """ nodes1, nodes2, nodes3 = _surface_helpers.compute_edge_nodes( self._nodes, self._degree ...	[ "def", "_compute_edges", "(", "self", ")", ":", "nodes1", ",", "nodes2", ",", "nodes3", "=", "_surface_helpers", ".", "compute_edge_nodes", "(", "self", ".", "_nodes", ",", "self", ".", "_degree", ")", "edge1", "=", "_curve_mod", ".", "Curve", "(", "nodes1...	39.357143	19.857143
def coverage(args): """ %prog coverage fastafile ctg bedfile1 bedfile2 .. Plot coverage from a set of BED files that contain the read mappings. The paired read span will be converted to a new bedfile that contain the happy mates. ctg is the chr/scf/ctg that you want to plot the histogram on. I...	[ "def", "coverage", "(", "args", ")", ":", "from", "jcvi", ".", "formats", ".", "bed", "import", "mates", ",", "bedpe", "p", "=", "OptionParser", "(", "coverage", ".", "__doc__", ")", "p", ".", "add_option", "(", "\"--ymax\"", ",", "default", "=", "None...	33.246753	19.922078
def access_token(self): """return an Oauth 2.0 Bearer access token if it can be found""" access_token = self.get_auth_bearer() if not access_token: access_token = self.query_kwargs.get('access_token', '') if not access_token: access_token = self.body_kwarg...	[ "def", "access_token", "(", "self", ")", ":", "access_token", "=", "self", ".", "get_auth_bearer", "(", ")", "if", "not", "access_token", ":", "access_token", "=", "self", ".", "query_kwargs", ".", "get", "(", "'access_token'", ",", "''", ")", "if", "not",...	40.666667	17.111111
def get_property(host=None, admin_username=None, admin_password=None, property=None): ''' .. versionadded:: Fluorine Return specific property host The chassis host. admin_username The username used to access the chassis. admin_password The password used to access the ...	[ "def", "get_property", "(", "host", "=", "None", ",", "admin_username", "=", "None", ",", "admin_password", "=", "None", ",", "property", "=", "None", ")", ":", "if", "property", "is", "None", ":", "raise", "SaltException", "(", "'No property specified!'", "...	25.033333	25.566667
def fit_pRF_radius(ctx, retinotopy=Ellipsis, mask=None, weight=Ellipsis, slope_only=False): ''' fit_pRF_radius(ctx) fits a line, meccen + b, to the pRF radius and yields the tuple (m, b). The following options may be given: retinotopy (default: Ellipsis) specifies the prefix for the retinotopy (pa...	[ "def", "fit_pRF_radius", "(", "ctx", ",", "retinotopy", "=", "Ellipsis", ",", "mask", "=", "None", ",", "weight", "=", "Ellipsis", ",", "slope_only", "=", "False", ")", ":", "rdat", "=", "retinotopy_data", "(", "ctx", ",", "retinotopy", ")", "if", "'radi...	53.131579	25.815789
def save(self, refreshing=None, next_action=None, json_last_refresh=None, data_blob=None): """ save or update the component on the Ariane server cache :param refreshing: the new refreshing value - default None and ignored :param next_action: the new next action - default None and ignored...	[ "def", "save", "(", "self", ",", "refreshing", "=", "None", ",", "next_action", "=", "None", ",", "json_last_refresh", "=", "None", ",", "data_blob", "=", "None", ")", ":", "LOGGER", ".", "debug", "(", "\"InjectorCachedComponent.save\"", ")", "ret", "=", "...	46.75	25.386364
def csiszar_vimco(f, p_log_prob, q, num_draws, num_batch_draws=1, seed=None, name=None): """Use VIMCO to lower the variance of gradient[csiszar_function(Avg(logu))]. This function generalizes VIMCO [(Mnih an...	[ "def", "csiszar_vimco", "(", "f", ",", "p_log_prob", ",", "q", ",", "num_draws", ",", "num_batch_draws", "=", "1", ",", "seed", "=", "None", ",", "name", "=", "None", ")", ":", "with", "tf", ".", "compat", ".", "v1", ".", "name_scope", "(", "name", ...	39.55102	23.132653
def get_db_driver(uri, username=None, password=None, encrypted=True, max_pool_size=50, trust=0): """ :param uri: Bolt uri :type uri: str :param username: Neo4j username :type username: str :param password: Neo4j password :type password: str :param encrypted: Use TLS :type encrypted: ...	[ "def", "get_db_driver", "(", "uri", ",", "username", "=", "None", ",", "password", "=", "None", ",", "encrypted", "=", "True", ",", "max_pool_size", "=", "50", ",", "trust", "=", "0", ")", ":", "return", "GraphDatabase", ".", "driver", "(", "uri", ",",...	39.157895	18.315789
def QAM_bb(N_symb,Ns,mod_type='16qam',pulse='rect',alpha=0.35): """ QAM_BB_TX: A complex baseband transmitter x,b,tx_data = QAM_bb(K,Ns,M) //////////// Inputs ////////////////////////////////////////////////// N_symb = the number of symbols to process Ns = number of samples per symbol ...	[ "def", "QAM_bb", "(", "N_symb", ",", "Ns", ",", "mod_type", "=", "'16qam'", ",", "pulse", "=", "'rect'", ",", "alpha", "=", "0.35", ")", ":", "# Filter the impulse train waveform with a square root raised", "# cosine pulse shape designed as follows:", "# Design the filter...	37.520548	16.643836
def roster(self, year): """Returns the roster table for the given year. :year: The year for which we want the roster; defaults to current year. :returns: A DataFrame containing roster information for that year. """ doc = self.get_year_doc('{}_roster'.format(year)) roster...	[ "def", "roster", "(", "self", ",", "year", ")", ":", "doc", "=", "self", ".", "get_year_doc", "(", "'{}_roster'", ".", "format", "(", "year", ")", ")", "roster_table", "=", "doc", "(", "'table#games_played_team'", ")", "df", "=", "sportsref", ".", "utils...	47.35	19.25
def _uminumaxvmin(self,args,*kwargs): """ NAME: _uminumaxvmin PURPOSE: evaluate u_min, u_max, and v_min INPUT: Either: a) R,vR,vT,z,vz b) Orbit instance: initial condition used if that's it, orbit(t) if there...	[ "def", "_uminumaxvmin", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "delta", "=", "kwargs", ".", "pop", "(", "'delta'", ",", "self", ".", "_delta", ")", "if", "(", "(", "self", ".", "_c", "and", "not", "(", "'c'", "in", "k...	42.695652	14.565217
def get_configured_provider(): ''' Return the first configured instance. ''' return config.is_provider_configured( __opts__, __active_provider_name__ or __virtualname__, ('auth', 'region_name'), log_message=False, ) or config.is_provider_configured( __opts__, __active_provide...	[ "def", "get_configured_provider", "(", ")", ":", "return", "config", ".", "is_provider_configured", "(", "__opts__", ",", "__active_provider_name__", "or", "__virtualname__", ",", "(", "'auth'", ",", "'region_name'", ")", ",", "log_message", "=", "False", ",", ")"...	34.272727	16.090909
def start_monitor(self): """Start the monitor.""" stdout_file, stderr_file = self.new_log_files("monitor") process_info = ray.services.start_monitor( self._redis_address, stdout_file=stdout_file, stderr_file=stderr_file, autoscaling_config=self._ra...	[ "def", "start_monitor", "(", "self", ")", ":", "stdout_file", ",", "stderr_file", "=", "self", ".", "new_log_files", "(", "\"monitor\"", ")", "process_info", "=", "ray", ".", "services", ".", "start_monitor", "(", "self", ".", "_redis_address", ",", "stdout_fi...	50.363636	16.909091
def _get_hashed_path(self, path): """Returns an md5 hash for the specified file path.""" return self._get_path('%s.pkl' % hashlib.md5(path.encode("utf-8")).hexdigest())	[ "def", "_get_hashed_path", "(", "self", ",", "path", ")", ":", "return", "self", ".", "_get_path", "(", "'%s.pkl'", "%", "hashlib", ".", "md5", "(", "path", ".", "encode", "(", "\"utf-8\"", ")", ")", ".", "hexdigest", "(", ")", ")" ]	60.666667	18
def new_result(self, data_mode='value', time_mode='framewise'): ''' Create a new result Attributes ---------- data_object : MetadataObject id_metadata : MetadataObject audio_metadata : MetadataObject frame_metadata : MetadataObject label_metadata ...	[ "def", "new_result", "(", "self", ",", "data_mode", "=", "'value'", ",", "time_mode", "=", "'framewise'", ")", ":", "from", "datetime", "import", "datetime", "result", "=", "AnalyzerResult", "(", "data_mode", "=", "data_mode", ",", "time_mode", "=", "time_mode...	37.586957	20.5
def write_pkg_file(self, file): """Write the PKG-INFO format data to a file object. """ version = self.get_metadata_version() if six.PY2: def write_field(key, value): file.write("%s: %s\n" % (key, self._encode_field(value))) else: def write_field(key, value): ...	[ "def", "write_pkg_file", "(", "self", ",", "file", ")", ":", "version", "=", "self", ".", "get_metadata_version", "(", ")", "if", "six", ".", "PY2", ":", "def", "write_field", "(", "key", ",", "value", ")", ":", "file", ".", "write", "(", "\"%s: %s\\n\...	32.72973	16.567568
def _convert_nominal_form( analysis ): ''' Converts nominal categories of the input analysis. Performs one-to-one conversions only. ''' assert FORM in analysis, '(!) The input analysis does not contain "'+FORM+'" key.' for idx, pattern_items in enumerate(_noun_conversion_rules): pattern_str...	[ "def", "_convert_nominal_form", "(", "analysis", ")", ":", "assert", "FORM", "in", "analysis", ",", "'(!) The input analysis does not contain \"'", "+", "FORM", "+", "'\" key.'", "for", "idx", ",", "pattern_items", "in", "enumerate", "(", "_noun_conversion_rules", ")"...	53.555556	18.666667
def run(self, conf, arg, err): """ WeldContext is currently hidden from the Python API. We create a new context per Weld run and give ownership of it to the resulting value. NOTE: This can leak the context if the result of the Weld run is an error. """ weld_conte...	[ "def", "run", "(", "self", ",", "conf", ",", "arg", ",", "err", ")", ":", "weld_context_new", "=", "weld", ".", "weld_context_new", "weld_context_new", ".", "argtypes", "=", "[", "c_weld_conf", "]", "weld_context_new", ".", "restype", "=", "c_weld_context", ...	41.6	16.9
def staticMovingAverage2(x, N=3, mode='reflect'): """ moving average filter for 1d arrays supported modes for boundary handling: 'reflect' , 'constant' """ assert N > 1 x2 = np.empty(shape=x.shape[0] + N, dtype=x.dtype) start = N - 2 if N == 2: start = 1 end = N - start ...	[ "def", "staticMovingAverage2", "(", "x", ",", "N", "=", "3", ",", "mode", "=", "'reflect'", ")", ":", "assert", "N", ">", "1", "x2", "=", "np", ".", "empty", "(", "shape", "=", "x", ".", "shape", "[", "0", "]", "+", "N", ",", "dtype", "=", "x...	25.382353	18.558824
def repair(source, validate_archive=False): """Use auditwheel (https://github.com/pypa/auditwheel) to attempt and repair all wheels in a wagon. The repair process will: 1. Extract the wagon and its metadata 2. Repair all wheels 3. Update the metadata with the new wheel names and platform 4...	[ "def", "repair", "(", "source", ",", "validate_archive", "=", "False", ")", ":", "_assert_auditwheel_exists", "(", ")", "logger", ".", "info", "(", "'Repairing: %s'", ",", "source", ")", "processed_source", "=", "get_source", "(", "source", ")", "metadata", "=...	33.380952	13.452381
async def teardown_conn(self, context): """Teardown a connection from a client.""" client_id = context.user_data self._logger.info("Tearing down client connection: %s", client_id) if client_id not in self.clients: self._logger.warning("client_id %s did not exist in teardown...	[ "async", "def", "teardown_conn", "(", "self", ",", "context", ")", ":", "client_id", "=", "context", ".", "user_data", "self", ".", "_logger", ".", "info", "(", "\"Tearing down client connection: %s\"", ",", "client_id", ")", "if", "client_id", "not", "in", "s...	38.3	19.7
def load_dict(self, source, namespace=''): """ Load values from a dictionary structure. Nesting can be used to represent namespaces. >>> c = ConfigDict() >>> c.load_dict({'some': {'namespace': {'key': 'value'} } }) {'some.namespace.key': 'value'} """ ...	[ "def", "load_dict", "(", "self", ",", "source", ",", "namespace", "=", "''", ")", ":", "for", "key", ",", "value", "in", "source", ".", "items", "(", ")", ":", "if", "isinstance", "(", "key", ",", "str", ")", ":", "nskey", "=", "(", "namespace", ...	39.833333	13.166667
def _psicomputations(self, kern, Z, variational_posterior, return_psi2_n=False): """ Z - MxQ mu - NxQ S - NxQ """ variance, lengthscale = kern.variance, kern.lengthscale N,M,Q = self.get_dimensions(Z, variational_posterior) self._initGPUCache(N,M,Q) ...	[ "def", "_psicomputations", "(", "self", ",", "kern", ",", "Z", ",", "variational_posterior", ",", "return_psi2_n", "=", "False", ")", ":", "variance", ",", "lengthscale", "=", "kern", ".", "variance", ",", "kern", ".", "lengthscale", "N", ",", "M", ",", ...	58.567568	35.756757
def parse_code(self): """ Read the source code and return all the import statements. Returns: list of dict: the import statements. """ code = open(self.path, encoding='utf-8').read() try: body = ast.parse(code).body except SyntaxError: ...	[ "def", "parse_code", "(", "self", ")", ":", "code", "=", "open", "(", "self", ".", "path", ",", "encoding", "=", "'utf-8'", ")", ".", "read", "(", ")", "try", ":", "body", "=", "ast", ".", "parse", "(", "code", ")", ".", "body", "except", "Syntax...	29.470588	13.588235
def is_multifile_object_without_children(self, location: str) -> bool: """ Returns True if an item with this location is present as a multifile object without children. For this implementation, this means that there is a file with the appropriate name but without extension :param locati...	[ "def", "is_multifile_object_without_children", "(", "self", ",", "location", ":", "str", ")", "->", "bool", ":", "# (1) Find the base directory and base name", "if", "isdir", "(", "location", ")", ":", "# special case: parent location is the root folder where all the files are....	48.888889	30.222222
def download_file_job(entry, directory, checksums, filetype='genbank', symlink_path=None): """Generate a DownloadJob that actually triggers a file download.""" pattern = NgdConfig.get_fileending(filetype) filename, expected_checksum = get_name_and_checksum(checksums, pattern) base_url = convert_ftp_url(...	[ "def", "download_file_job", "(", "entry", ",", "directory", ",", "checksums", ",", "filetype", "=", "'genbank'", ",", "symlink_path", "=", "None", ")", ":", "pattern", "=", "NgdConfig", ".", "get_fileending", "(", "filetype", ")", "filename", ",", "expected_ch...	44.375	19.75
def random_uniform(attrs, inputs, proto_obj): """Draw random samples from a uniform distribtuion.""" try: from onnx.mapping import TENSOR_TYPE_TO_NP_TYPE except ImportError: raise ImportError("Onnx and protobuf need to be installed. " "Instructions to install - http...	[ "def", "random_uniform", "(", "attrs", ",", "inputs", ",", "proto_obj", ")", ":", "try", ":", "from", "onnx", ".", "mapping", "import", "TENSOR_TYPE_TO_NP_TYPE", "except", "ImportError", ":", "raise", "ImportError", "(", "\"Onnx and protobuf need to be installed. \"",...	53.4	21.4
def fact(name, puppet=False): ''' Run facter for a specific fact CLI Example: .. code-block:: bash salt '*' puppet.fact kernel ''' opt_puppet = '--puppet' if puppet else '' ret = __salt__['cmd.run_all']( 'facter {0} {1}'.format(opt_puppet, name), python_she...	[ "def", "fact", "(", "name", ",", "puppet", "=", "False", ")", ":", "opt_puppet", "=", "'--puppet'", "if", "puppet", "else", "''", "ret", "=", "__salt__", "[", "'cmd.run_all'", "]", "(", "'facter {0} {1}'", ".", "format", "(", "opt_puppet", ",", "name", "...	21.857143	20.904762
def get_project(self, project_id): """ Get project info """ try: result = self._request('/getproject/', {'projectid': project_id}) return TildaProject(**result) except NetworkError: return []	[ "def", "get_project", "(", "self", ",", "project_id", ")", ":", "try", ":", "result", "=", "self", ".", "_request", "(", "'/getproject/'", ",", "{", "'projectid'", ":", "project_id", "}", ")", "return", "TildaProject", "(", "", "", "result", ")", "exce...	34.875	12.125
def jr6_jr6(mag_file, dir_path=".", input_dir_path="", meas_file="measurements.txt", spec_file="specimens.txt", samp_file="samples.txt", site_file="sites.txt", loc_file="locations.txt", specnum=1, samp_con='1', location='unknown', lat='', lon='', noave=False, meth_code="L...	[ "def", "jr6_jr6", "(", "mag_file", ",", "dir_path", "=", "\".\"", ",", "input_dir_path", "=", "\"\"", ",", "meas_file", "=", "\"measurements.txt\"", ",", "spec_file", "=", "\"specimens.txt\"", ",", "samp_file", "=", "\"samples.txt\"", ",", "site_file", "=", "\"s...	42.581749	20.087452
def community_topic_show(self, id, kwargs): "https://developer.zendesk.com/rest_api/docs/help_center/topics#show-topic" api_path = "/api/v2/community/topics/{id}.json" api_path = api_path.format(id=id) return self.call(api_path, kwargs)	[ "def", "community_topic_show", "(", "self", ",", "id", ",", "", "", "kwargs", ")", ":", "api_path", "=", "\"/api/v2/community/topics/{id}.json\"", "api_path", "=", "api_path", ".", "format", "(", "id", "=", "id", ")", "return", "self", ".", "call", "(", ...	53.6	13.6
def init_state_from_encoder(self, encoder_outputs, encoder_valid_length=None): """Initialize the state from the encoder outputs. Parameters ---------- encoder_outputs : list encoder_valid_length : NDArray or None Returns ------- decoder_states : list ...	[ "def", "init_state_from_encoder", "(", "self", ",", "encoder_outputs", ",", "encoder_valid_length", "=", "None", ")", ":", "mem_value", ",", "rnn_states", "=", "encoder_outputs", "batch_size", ",", "_", ",", "mem_size", "=", "mem_value", ".", "shape", "attention_v...	37.965517	16.517241
def targeted_dropout(inputs, k, keep_prob, targeting_fn, is_training, do_prune=False): """Applies targeted dropout. Applies dropout at a rate of `1 - keep_prob` to only those elements of `inputs` marked by `t...	[ "def", "targeted_dropout", "(", "inputs", ",", "k", ",", "keep_prob", ",", "targeting_fn", ",", "is_training", ",", "do_prune", "=", "False", ")", ":", "if", "not", "is_training", "and", "do_prune", ":", "k", "=", "tf", ".", "round", "(", "to_float", "("...	37.619048	22.071429
def update_roles(self, roles='view'): """ Updates the roles of this permission :return: Success / Failure :rtype: bool """ if not self.object_id: return False url = self.build_url(self._endpoints.get('permission').format( driveitem_id=self.drivei...	[ "def", "update_roles", "(", "self", ",", "roles", "=", "'view'", ")", ":", "if", "not", "self", ".", "object_id", ":", "return", "False", "url", "=", "self", ".", "build_url", "(", "self", ".", "_endpoints", ".", "get", "(", "'permission'", ")", ".", ...	29.52	17.64
def getComponentByName(self, name, default=noValue, instantiate=True): """Returns \|ASN.1\| type component by name. Equivalent to Python :class:`dict` subscription operation (e.g. `[]`). Parameters ---------- name: :class:`str` \|ASN.1\| type component name Key...	[ "def", "getComponentByName", "(", "self", ",", "name", ",", "default", "=", "noValue", ",", "instantiate", "=", "True", ")", ":", "if", "self", ".", "_componentTypeLen", ":", "idx", "=", "self", ".", "componentType", ".", "getPositionByName", "(", "name", ...	35.361111	25.388889
def copy(self, **replacements): """Returns a clone of this JarDependency with the given replacements kwargs overlaid.""" cls = type(self) kwargs = self._asdict() for key, val in replacements.items(): if key == 'excludes': val = JarDependency._prepare_excludes(val) kwargs[key] = val ...	[ "def", "copy", "(", "self", ",", "", "", "replacements", ")", ":", "cls", "=", "type", "(", "self", ")", "kwargs", "=", "self", ".", "_asdict", "(", ")", "for", "key", ",", "val", "in", "replacements", ".", "items", "(", ")", ":", "if", "key", ...	37.909091	8.818182
def wns_send_message( uri, message=None, xml_data=None, raw_data=None, application_id=None, **kwargs ): """ Sends a notification request to WNS. There are four notification types that WNS can send: toast, tile, badge and raw. Toast, tile, and badge can all be customized to use different templates/icons/sounds/lau...	[ "def", "wns_send_message", "(", "uri", ",", "message", "=", "None", ",", "xml_data", "=", "None", ",", "raw_data", "=", "None", ",", "application_id", "=", "None", ",", "", "", "kwargs", ")", ":", "# Create a simple toast notification", "if", "message", ":...	34.857143	24.31746
def page(self, status=values.unset, phone_number=values.unset, incoming_phone_number_sid=values.unset, friendly_name=values.unset, unique_name=values.unset, page_token=values.unset, page_number=values.unset, page_size=values.unset): """ Retrieve a single page of Ho...	[ "def", "page", "(", "self", ",", "status", "=", "values", ".", "unset", ",", "phone_number", "=", "values", ".", "unset", ",", "incoming_phone_number_sid", "=", "values", ".", "unset", ",", "friendly_name", "=", "values", ".", "unset", ",", "unique_name", ...	45.421053	23.842105
def get_yaml_decorators(rq): """ Returns the yaml decorator metadata only (this is needed by triple pattern fragments) """ # glogger.debug('Guessing decorators for query {}'.format(rq)) if not rq: return None if isinstance(rq, dict) and 'grlc' in rq: # json query (sparql transformer) ...	[ "def", "get_yaml_decorators", "(", "rq", ")", ":", "# glogger.debug('Guessing decorators for query {}'.format(rq))", "if", "not", "rq", ":", "return", "None", "if", "isinstance", "(", "rq", ",", "dict", ")", "and", "'grlc'", "in", "rq", ":", "# json query (sparql tr...	38.057143	22.685714
def open_tablebase(directory: PathLike, *, load_wdl: bool = True, load_dtz: bool = True, max_fds: Optional[int] = 128, VariantBoard: Type[chess.Board] = chess.Board) -> Tablebase: """ Opens a collection of tables for probing. See :class:`~chess.syzygy.Tablebase`. .. note:: Generally probing re...	[ "def", "open_tablebase", "(", "directory", ":", "PathLike", ",", "*", ",", "load_wdl", ":", "bool", "=", "True", ",", "load_dtz", ":", "bool", "=", "True", ",", "max_fds", ":", "Optional", "[", "int", "]", "=", "128", ",", "VariantBoard", ":", "Type", ...	49.882353	29.411765
def register(cls, namespace, name): """Class decorator""" def func(kind): cls._FOREIGN[(namespace, name)] = kind() return kind return func	[ "def", "register", "(", "cls", ",", "namespace", ",", "name", ")", ":", "def", "func", "(", "kind", ")", ":", "cls", ".", "_FOREIGN", "[", "(", "namespace", ",", "name", ")", "]", "=", "kind", "(", ")", "return", "kind", "return", "func" ]	25.857143	16
def is_unitary(self, atol=None, rtol=None): """Return True if QuantumChannel is a unitary channel.""" try: op = self.to_operator() return op.is_unitary(atol=atol, rtol=rtol) except QiskitError: return False	[ "def", "is_unitary", "(", "self", ",", "atol", "=", "None", ",", "rtol", "=", "None", ")", ":", "try", ":", "op", "=", "self", ".", "to_operator", "(", ")", "return", "op", ".", "is_unitary", "(", "atol", "=", "atol", ",", "rtol", "=", "rtol", ")...	37.142857	11.285714
def add_line(psr,f,A,offset=0.5): """ Add a line of frequency `f` [Hz] and amplitude `A` [s], with origin at a fraction `offset` through the dataset. """ t = psr.toas() t0 = offset * (N.max(t) - N.min(t)) sine = A * N.cos(2 * math.pi * f * day * (t - t0)) psr.stoas[:] += sine / day	[ "def", "add_line", "(", "psr", ",", "f", ",", "A", ",", "offset", "=", "0.5", ")", ":", "t", "=", "psr", ".", "toas", "(", ")", "t0", "=", "offset", "*", "(", "N", ".", "max", "(", "t", ")", "-", "N", ".", "min", "(", "t", ")", ")", "si...	28.181818	15.272727
def parse_sgf_to_examples(sgf_path): """Return supervised examples from positions NOTE: last move is not played because no p.next_move after. """ return zip(*[(p.position, p.next_move, p.result) for p in sgf_wrapper.replay_sgf_file(sgf_path)])	[ "def", "parse_sgf_to_examples", "(", "sgf_path", ")", ":", "return", "zip", "(", "*", "[", "(", "p", ".", "position", ",", "p", ".", "next_move", ",", "p", ".", "result", ")", "for", "p", "in", "sgf_wrapper", ".", "replay_sgf_file", "(", "sgf_path", ")...	33.875	18
def release_address(self, address): """ Release a previously allocated address returned by C{allocate_address}. @return: C{True} if the operation succeeded. """ query = self.query_factory( action="ReleaseAddress", creds=self.creds, endpoint=self.endpoint, ...	[ "def", "release_address", "(", "self", ",", "address", ")", ":", "query", "=", "self", ".", "query_factory", "(", "action", "=", "\"ReleaseAddress\"", ",", "creds", "=", "self", ".", "creds", ",", "endpoint", "=", "self", ".", "endpoint", ",", "other_param...	38.909091	15.818182
def _initstr(modname, imports, from_imports, inject_execstr, withheader=True): """ Calls the other string makers """ header = _make_module_header() if withheader else '' import_str = _make_imports_str(imports, modname) fromimport_str = _make_fromimport_str(from_imports, modname) initstr ...	[ "def", "_initstr", "(", "modname", ",", "imports", ",", "from_imports", ",", "inject_execstr", ",", "withheader", "=", "True", ")", ":", "header", "=", "_make_module_header", "(", ")", "if", "withheader", "else", "''", "import_str", "=", "_make_imports_str", "...	39	18.583333
def close(self): """close() Disconnects the object from the bus. """ os.close(self._fd) self._fd = -1 self._addr = -1 self._pec = 0	[ "def", "close", "(", "self", ")", ":", "os", ".", "close", "(", "self", ".", "_fd", ")", "self", ".", "_fd", "=", "-", "1", "self", ".", "_addr", "=", "-", "1", "self", ".", "_pec", "=", "0" ]	20	15.222222
def name(self): """ Similar to :attr:`complete`, but return the whole word, for example:: subrout would return `subroutine`. """ if hasattr(self._element, "name"): return self._element.name else: return str(self._element)	[ "def", "name", "(", "self", ")", ":", "if", "hasattr", "(", "self", ".", "_element", ",", "\"name\"", ")", ":", "return", "self", ".", "_element", ".", "name", "else", ":", "return", "str", "(", "self", ".", "_element", ")" ]	23.307692	16.692308
def load_reconstruction(folder, slice_start=0, slice_end=-1): """Load a volume from folder, also returns the corresponding partition. Parameters ---------- folder : str Path to the folder where the DICOM files are stored. slice_start : int Index of the first slice to use. Used for s...	[ "def", "load_reconstruction", "(", "folder", ",", "slice_start", "=", "0", ",", "slice_end", "=", "-", "1", ")", ":", "file_names", "=", "sorted", "(", "[", "f", "for", "f", "in", "os", ".", "listdir", "(", "folder", ")", "if", "f", ".", "endswith", ...	35.411765	22.333333
def list_receivers(self): """ Prints a list of all registered receivers. Including signal, plugin name and description. """ print("Receiver list") print("*************\n") for key, receiver in self.app.signals.receivers.items(): print("%s <-- %s (%s):\n %s\n"...	[ "def", "list_receivers", "(", "self", ")", ":", "print", "(", "\"Receiver list\"", ")", "print", "(", "\"*************\\n\"", ")", "for", "key", ",", "receiver", "in", "self", ".", "app", ".", "signals", ".", "receivers", ".", "items", "(", ")", ":", "pr...	48.272727	19.545455
def _negf(ins): ''' Changes sign of top of the stack (48 bits) ''' output = _float_oper(ins.quad[2]) output.append('call __NEGF') output.extend(_fpush()) REQUIRES.add('negf.asm') return output	[ "def", "_negf", "(", "ins", ")", ":", "output", "=", "_float_oper", "(", "ins", ".", "quad", "[", "2", "]", ")", "output", ".", "append", "(", "'call __NEGF'", ")", "output", ".", "extend", "(", "_fpush", "(", ")", ")", "REQUIRES", ".", "add", "(",...	26.625	15.875
def _check_seismogenic_depths(self, upper_depth, lower_depth): ''' Checks the seismic depths for physical consistency :param float upper_depth: Upper seismogenic depth (km) :param float lower_depth: Lower seismogenic depth (km) ''' # Simple check ...	[ "def", "_check_seismogenic_depths", "(", "self", ",", "upper_depth", ",", "lower_depth", ")", ":", "# Simple check on depths", "if", "upper_depth", ":", "if", "upper_depth", "<", "0.", ":", "raise", "ValueError", "(", "'Upper seismogenic depth must be greater than'", "'...	36.740741	18.666667
def get_cached_colour(element, orbital, colours=None, cache=None): """Get a colour for a particular elemental and orbital combination. If the element is not specified in the colours dictionary, the cache is checked. If this element-orbital combination has not been chached before, a new colour is drawn ...	[ "def", "get_cached_colour", "(", "element", ",", "orbital", ",", "colours", "=", "None", ",", "cache", "=", "None", ")", ":", "if", "cache", "is", "None", ":", "cache", "=", "colour_cache", "def", "_get_colour_with_cache", "(", "element", ",", "orbital", "...	39.936709	23.253165

def calc_qdgz1_qdgz2_v1(self): """Seperate total direct flow into a small and a fast component. Required control parameters: |A1| |A2| Required flux sequence: |QDGZ| Calculated state sequences: |QDGZ1| |QDGZ2| Basic equation: :math:`QDGZ2 = \\frac{(QDGZ-A2)^2...

[ "def", "calc_qdgz1_qdgz2_v1", "(", "self", ")", ":", "con", "=", "self", ".", "parameters", ".", "control", ".", "fastaccess", "flu", "=", "self", ".", "sequences", ".", "fluxes", ".", "fastaccess", "sta", "=", "self", ".", "sequences", ".", "states", "....

34.158879

18.672897

def get_env_macros(self, data): """Get all environment macros from data For each object in data :: * Fetch all macros in object.__class__.macros * Fetch all customs macros in o.custom :param data: data to get macro :type data: :return: dict with macro name as ke...

[ "def", "get_env_macros", "(", "self", ",", "data", ")", ":", "env", "=", "{", "}", "for", "obj", "in", "data", ":", "cls", "=", "obj", ".", "__class__", "macros", "=", "cls", ".", "macros", "for", "macro", "in", "macros", ":", "if", "macro", ".", ...

35.121212

17.787879

def count_list(the_list): """ Generates a count of the number of times each unique item appears in a list """ count = the_list.count result = [(item, count(item)) for item in set(the_list)] result.sort() return result

[ "def", "count_list", "(", "the_list", ")", ":", "count", "=", "the_list", ".", "count", "result", "=", "[", "(", "item", ",", "count", "(", "item", ")", ")", "for", "item", "in", "set", "(", "the_list", ")", "]", "result", ".", "sort", "(", ")", ...

29.75

16.75

def send(self, cmd): """ Send a command to the bridge. :param cmd: List of command bytes. """ self._bridge.send(cmd, wait=self.wait, reps=self.reps)

[ "def", "send", "(", "self", ",", "cmd", ")", ":", "self", ".", "_bridge", ".", "send", "(", "cmd", ",", "wait", "=", "self", ".", "wait", ",", "reps", "=", "self", ".", "reps", ")" ]

29.333333

14

def _copy_selection(self, *event): """Copies the current selection to the clipboard. """ if react_to_event(self.view, self.view.editor, event): logger.debug("copy selection") global_clipboard.copy(self.model.selection) return True

[ "def", "_copy_selection", "(", "self", ",", "*", "event", ")", ":", "if", "react_to_event", "(", "self", ".", "view", ",", "self", ".", "view", ".", "editor", ",", "event", ")", ":", "logger", ".", "debug", "(", "\"copy selection\"", ")", "global_clipboa...

40.571429

8.857143

def when_children_replaced ( self, object, listener, remove ): """ Sets up or removes a listener for children being replaced on a specified object. """ object.on_trait_change( listener, "subgraphs", remove = remove, dispatch = "fast_ui" ) objec...

[ "def", "when_children_replaced", "(", "self", ",", "object", ",", "listener", ",", "remove", ")", ":", "object", ".", "on_trait_change", "(", "listener", ",", "\"subgraphs\"", ",", "remove", "=", "remove", ",", "dispatch", "=", "\"fast_ui\"", ")", "object", ...

55.583333

17

def show_periodical_tree_by_issn(issn): """ Render tree using ISSN. """ trees = tree_handler().trees_by_issn(issn) if not trees: abort(404, "Dokument s ISSN '%s' není dostupný." % issn) return render_trees( trees, partial(web_tools.compose_tree_path, issn=True) )

[ "def", "show_periodical_tree_by_issn", "(", "issn", ")", ":", "trees", "=", "tree_handler", "(", ")", ".", "trees_by_issn", "(", "issn", ")", "if", "not", "trees", ":", "abort", "(", "404", ",", "\"Dokument s ISSN '%s' není dostupný.\" %", "i", "sn)", "", "ret...

23.461538

18.384615

def _split(self, split_cls, editor_buffer=None): """ Split horizontal or vertical. (when editor_buffer is None, show the current buffer there as well.) """ if editor_buffer is None: editor_buffer = self.active_window.editor_buffer active_split = self._get_act...

[ "def", "_split", "(", "self", ",", "split_cls", ",", "editor_buffer", "=", "None", ")", ":", "if", "editor_buffer", "is", "None", ":", "editor_buffer", "=", "self", ".", "active_window", ".", "editor_buffer", "active_split", "=", "self", ".", "_get_active_spli...

36.238095

15.285714

def get_composition_search_session(self, proxy): """Gets a composition search session. arg proxy (osid.proxy.Proxy): a proxy return: (osid.repository.CompositionSearchSession) - a CompositionSearchSession raise: OperationFailed - unable to complete request r...

[ "def", "get_composition_search_session", "(", "self", ",", "proxy", ")", ":", "if", "not", "self", ".", "supports_composition_search", "(", ")", ":", "raise", "Unimplemented", "(", ")", "try", ":", "from", ".", "import", "sessions", "except", "ImportError", ":...

38.791667

15.958333

def setSample(self, sample): """Set sample points from the population. Should be a RDD""" if not isinstance(sample, RDD): raise TypeError("samples should be a RDD, received %s" % type(sample)) self._sample = sample

[ "def", "setSample", "(", "self", ",", "sample", ")", ":", "if", "not", "isinstance", "(", "sample", ",", "RDD", ")", ":", "raise", "TypeError", "(", "\"samples should be a RDD, received %s\"", "%", "type", "(", "sample", ")", ")", "self", ".", "_sample", "...

49.2

13.2

def novatel_diag_send(self, timeStatus, receiverStatus, solStatus, posType, velType, posSolAge, csFails, force_mavlink1=False): ''' Transmits the diagnostics data from the Novatel OEMStar GPS timeStatus : The Time Status. See Table 8 page 27 Novatel OEMSta...

[ "def", "novatel_diag_send", "(", "self", ",", "timeStatus", ",", "receiverStatus", ",", "solStatus", ",", "posType", ",", "velType", ",", "posSolAge", ",", "csFails", ",", "force_mavlink1", "=", "False", ")", ":", "return", "self", ".", "send", "(", "self", ...

77.714286

55.142857

def get_column_cursor_position(self, column): """ Return the relative cursor position for this column at the current line. (It will stay between the boundaries of the line in case of a larger number.) """ line_length = len(self.current_line) current_column = self....

[ "def", "get_column_cursor_position", "(", "self", ",", "column", ")", ":", "line_length", "=", "len", "(", "self", ".", "current_line", ")", "current_column", "=", "self", ".", "cursor_position_col", "column", "=", "max", "(", "0", ",", "min", "(", "line_len...

38.090909

14.090909

def contains_point( self, x, y ): """Is the point (x,y) on this curve?""" return ( y * y - ( x * x * x + self.__a * x + self.__b ) ) % self.__p == 0

[ "def", "contains_point", "(", "self", ",", "x", ",", "y", ")", ":", "return", "(", "y", "*", "y", "-", "(", "x", "*", "x", "*", "x", "+", "self", ".", "__a", "*", "x", "+", "self", ".", "__b", ")", ")", "%", "self", ".", "__p", "==", "0" ...

51.333333

15

def to_json(self): """Returns an input shard state for the remaining inputs. Returns: A JSON serializable version of the remaining input to read. """ params = dict(self.__params) # Shallow copy. if self._PROTOTYPE_REQUEST_PARAM in params: prototype_request = params[self._PROTOTYPE_REQ...

[ "def", "to_json", "(", "self", ")", ":", "params", "=", "dict", "(", "self", ".", "__params", ")", "# Shallow copy.", "if", "self", ".", "_PROTOTYPE_REQUEST_PARAM", "in", "params", ":", "prototype_request", "=", "params", "[", "self", ".", "_PROTOTYPE_REQUEST_...

37.571429

20.857143

def do_chan_log_all(self, line): """Set the channel log level to ALL_COMMS. Command syntax is: chan_log_all""" self.application.channel.SetLogFilters(openpal.LogFilters(opendnp3.levels.ALL_COMMS)) print('Channel log filtering level is now: {0}'.format(opendnp3.levels.ALL_COMMS))

[ "def", "do_chan_log_all", "(", "self", ",", "line", ")", ":", "self", ".", "application", ".", "channel", ".", "SetLogFilters", "(", "openpal", ".", "LogFilters", "(", "opendnp3", ".", "levels", ".", "ALL_COMMS", ")", ")", "print", "(", "'Channel log filteri...

75

27.75

def evolved_transformer_big_tpu(): """Big parameters for Evolved Transformer model on TPU.""" hparams = add_evolved_transformer_hparams(transformer.transformer_big_tpu()) hparams.learning_rate_constant = 1 / hparams.learning_rate_warmup_steps ** 0.5 hparams.learning_rate_schedule = ( "constant*single_cycl...

[ "def", "evolved_transformer_big_tpu", "(", ")", ":", "hparams", "=", "add_evolved_transformer_hparams", "(", "transformer", ".", "transformer_big_tpu", "(", ")", ")", "hparams", ".", "learning_rate_constant", "=", "1", "/", "hparams", ".", "learning_rate_warmup_steps", ...

49.142857

16

def acquire(self, blocking=True, delay=DELAY_INCREMENT, max_delay=MAX_DELAY, timeout=None): """Attempt to acquire the given lock. :param blocking: whether to wait forever to try to acquire the lock :type blocking: bool :param delay: when blocking this is ...

[ "def", "acquire", "(", "self", ",", "blocking", "=", "True", ",", "delay", "=", "DELAY_INCREMENT", ",", "max_delay", "=", "MAX_DELAY", ",", "timeout", "=", "None", ")", ":", "if", "delay", "<", "0", ":", "raise", "ValueError", "(", "\"Delay must be greater...

42.928571

17.214286

def expire_at(self, key, _time): """ Sets the expiration time of @key to @_time @_time: absolute Unix timestamp (seconds since January 1, 1970) """ return self._client.expireat(self.get_key(key), round(_time))

[ "def", "expire_at", "(", "self", ",", "key", ",", "_time", ")", ":", "return", "self", ".", "_client", ".", "expireat", "(", "self", ".", "get_key", "(", "key", ")", ",", "round", "(", "_time", ")", ")" ]

48.2

14.4

def merge_versioned(releases, schema=None, merge_rules=None): """ Merges a list of releases into a versionedRelease. """ if not merge_rules: merge_rules = get_merge_rules(schema) merged = OrderedDict() for release in sorted(releases, key=lambda release: release['date']): release...

[ "def", "merge_versioned", "(", "releases", ",", "schema", "=", "None", ",", "merge_rules", "=", "None", ")", ":", "if", "not", "merge_rules", ":", "merge_rules", "=", "get_merge_rules", "(", "schema", ")", "merged", "=", "OrderedDict", "(", ")", "for", "re...

30.564103

16.25641

def resize(self, size:Union[int,TensorImageSize])->'Image': "Resize the image to `size`, size can be a single int." assert self._flow is None if isinstance(size, int): size=(self.shape[0], size, size) if tuple(size)==tuple(self.shape): return self self.flow = _affine_grid(size) ...

[ "def", "resize", "(", "self", ",", "size", ":", "Union", "[", "int", ",", "TensorImageSize", "]", ")", "->", "'Image'", ":", "assert", "self", ".", "_flow", "is", "None", "if", "isinstance", "(", "size", ",", "int", ")", ":", "size", "=", "(", "sel...

47.428571

16

def _check_roSet(orb,kwargs,funcName): """Function to check whether ro is set, because it's required for funcName""" if not orb._roSet and kwargs.get('ro',None) is None: warnings.warn("Method %s(.) requires ro to be given at Orbit initialization or at method evaluation; using default ro which is %f kpc"...

[ "def", "_check_roSet", "(", "orb", ",", "kwargs", ",", "funcName", ")", ":", "if", "not", "orb", ".", "_roSet", "and", "kwargs", ".", "get", "(", "'ro'", ",", "None", ")", "is", "None", ":", "warnings", ".", "warn", "(", "\"Method %s(.) requires ro to be...

74.8

29.4

def wasb_read(self, remote_log_location, return_error=False): """ Returns the log found at the remote_log_location. Returns '' if no logs are found or there is an error. :param remote_log_location: the log's location in remote storage :type remote_log_location: str (path) ...

[ "def", "wasb_read", "(", "self", ",", "remote_log_location", ",", "return_error", "=", "False", ")", ":", "try", ":", "return", "self", ".", "hook", ".", "read_file", "(", "self", ".", "wasb_container", ",", "remote_log_location", ")", "except", "AzureHttpErro...

45.222222

17.444444

def cross_validation(learner, dataset, k=10, trials=1): """Do k-fold cross_validate and return their mean. That is, keep out 1/k of the examples for testing on each of k runs. Shuffle the examples first; If trials>1, average over several shuffles.""" if k is None: k = len(dataset.examples) i...

[ "def", "cross_validation", "(", "learner", ",", "dataset", ",", "k", "=", "10", ",", "trials", "=", "1", ")", ":", "if", "k", "is", "None", ":", "k", "=", "len", "(", "dataset", ".", "examples", ")", "if", "trials", ">", "1", ":", "return", "mean...

45.5

14.642857

async def uvarint(self, elem): """ Uvarint untouched :param elem: :return: """ if self.writing: return await dump_varint(self.iobj, elem) else: return await load_varint(self.iobj)

[ "async", "def", "uvarint", "(", "self", ",", "elem", ")", ":", "if", "self", ".", "writing", ":", "return", "await", "dump_varint", "(", "self", ".", "iobj", ",", "elem", ")", "else", ":", "return", "await", "load_varint", "(", "self", ".", "iobj", "...

25

13.2

def build_upstream_edge_predicate(nodes: Iterable[BaseEntity]) -> EdgePredicate: """Build an edge predicate that pass for relations for which one of the given nodes is the object.""" nodes = set(nodes) def upstream_filter(graph: BELGraph, u: BaseEntity, v: BaseEntity, k: str) -> bool: """Pass for r...

[ "def", "build_upstream_edge_predicate", "(", "nodes", ":", "Iterable", "[", "BaseEntity", "]", ")", "->", "EdgePredicate", ":", "nodes", "=", "set", "(", "nodes", ")", "def", "upstream_filter", "(", "graph", ":", "BELGraph", ",", "u", ":", "BaseEntity", ",",...

52.666667

25.888889

def spline_interpolate(x_axis, y_axis, x_new_axis): """Interpolate a y = f(x) function using Spline interpolation algorithm, x_new_axis has to be in range of x_axis. `Spline interpolation <https://en.wikipedia.org/wiki/Spline_interpolation>`_ is a popular interpolation method. Way more accurate than l...

[ "def", "spline_interpolate", "(", "x_axis", ",", "y_axis", ",", "x_new_axis", ")", ":", "f", "=", "interp1d", "(", "x_axis", ",", "y_axis", ",", "kind", "=", "\"cubic\"", ")", "return", "f", "(", "x_new_axis", ")" ]

42.3

18.3

def main(argString=None): """The main function of this module. :param argString: the options. :type argString: list These are the steps: 1. Runs a plate bias analysis using Plink (:py:func:`executePlateBiasAnalysis`). 2. Extracts the list of significant markers after plate bias analys...

[ "def", "main", "(", "argString", "=", "None", ")", ":", "# Getting and checking the options", "args", "=", "parseArgs", "(", "argString", ")", "checkArgs", "(", "args", ")", "logger", ".", "info", "(", "\"Options used:\"", ")", "for", "key", ",", "value", "i...

31

18.725

def rem_active_module(module): '''Remove a module from CPENV_ACTIVE_MODULES environment variable''' modules = set(get_active_modules()) modules.discard(module) new_modules_path = os.pathsep.join([m.path for m in modules]) os.environ['CPENV_ACTIVE_MODULES'] = str(new_modules_path)

[ "def", "rem_active_module", "(", "module", ")", ":", "modules", "=", "set", "(", "get_active_modules", "(", ")", ")", "modules", ".", "discard", "(", "module", ")", "new_modules_path", "=", "os", ".", "pathsep", ".", "join", "(", "[", "m", ".", "path", ...

42.142857

20.428571

def img_from_vgg(x): '''Decondition an image from the VGG16 model.''' x = x.transpose((1, 2, 0)) x[:, :, 0] += 103.939 x[:, :, 1] += 116.779 x[:, :, 2] += 123.68 x = x[:,:,::-1] # to RGB return x

[ "def", "img_from_vgg", "(", "x", ")", ":", "x", "=", "x", ".", "transpose", "(", "(", "1", ",", "2", ",", "0", ")", ")", "x", "[", ":", ",", ":", ",", "0", "]", "+=", "103.939", "x", "[", ":", ",", ":", ",", "1", "]", "+=", "116.779", "...

27.125

15.875

def get_library_mapping(logger, prod_folder, token, host): """ returns a pair of library mappings, the first mapping library uri to a library name for all libraries in the production folder, and the second mapping library name to info for libraries in the production folder with parsable versions ...

[ "def", "get_library_mapping", "(", "logger", ",", "prod_folder", ",", "token", ",", "host", ")", ":", "res", "=", "requests", ".", "get", "(", "host", "+", "'/api/1.2/libraries/list'", ",", "auth", "=", "(", "'token'", ",", "token", ")", ",", ")", "if", ...

37.611111

16.833333

def render_impl(self, template, context, **opts): """ Render given template file and return the result. :param template: Template file path :param context: A dict or dict-like object to instantiate given template file :param opts: Options such as: - at_pa...

[ "def", "render_impl", "(", "self", ",", "template", ",", "context", ",", "*", "*", "opts", ")", ":", "return", "self", ".", "_render", "(", "os", ".", "path", ".", "basename", "(", "template", ")", ",", "context", ",", "True", ",", "*", "*", "opts"...

42.058824

17.941176

def web(port, debug=False, theme="modern", ssh_config=None): """Starts the web UI.""" from storm import web as _web _web.run(port, debug, theme, ssh_config)

[ "def", "web", "(", "port", ",", "debug", "=", "False", ",", "theme", "=", "\"modern\"", ",", "ssh_config", "=", "None", ")", ":", "from", "storm", "import", "web", "as", "_web", "_web", ".", "run", "(", "port", ",", "debug", ",", "theme", ",", "ssh...

41.25

7.75

def apply_optimization(self, update_embedding_with, grad, **kwargs): """ Calculating (Obtaining) the learning rate (eta) and apply optimizations on the embedding states by the specified method. Parameters ---------- update_embedding_with : function Function u...

[ "def", "apply_optimization", "(", "self", ",", "update_embedding_with", ",", "grad", ",", "*", "*", "kwargs", ")", ":", "if", "self", ".", "linesearch", ":", "return", "self", ".", "_apply_linesearch_optimzation", "(", "update_embedding_with", ",", "grad", ",", ...

40.962963

23.037037

def write(url, content, **args): """Put an object into a ftp URL.""" relay = urlparse.urlparse(args.pop('relay', 'lmtp://localhot')) try: smtplib_SMTPS = functools.partial(smtplib.SMTP_SSL, keyfile=args.pop('keyfile', None), ...

[ "def", "write", "(", "url", ",", "content", ",", "*", "*", "args", ")", ":", "relay", "=", "urlparse", ".", "urlparse", "(", "args", ".", "pop", "(", "'relay'", ",", "'lmtp://localhot'", ")", ")", "try", ":", "smtplib_SMTPS", "=", "functools", ".", "...

44.288889

17.555556

def _get_item(self, question_id): """we need a middle-man method to convert the unique "assessment-session" authority question_ids into "real" itemIds BUT this also has to return the "magic" item, so we can't rely on question = self.get_question(question_id) ...

[ "def", "_get_item", "(", "self", ",", "question_id", ")", ":", "question_map", "=", "self", ".", "_get_question_map", "(", "question_id", ")", "# Throws NotFound()", "real_question_id", "=", "Id", "(", "question_map", "[", "'questionId'", "]", ")", "return", "se...

53.75

18.916667

def bulk_copy(self, ids): """Bulk copy a set of results. :param ids: Int list of result IDs. :return: :class:`results.Result <results.Result>` list """ schema = ResultSchema() return self.service.bulk_copy(self.base, self.RESOURCE, ids, schema)

[ "def", "bulk_copy", "(", "self", ",", "ids", ")", ":", "schema", "=", "ResultSchema", "(", ")", "return", "self", ".", "service", ".", "bulk_copy", "(", "self", ".", "base", ",", "self", ".", "RESOURCE", ",", "ids", ",", "schema", ")" ]

35.75

15.625

def is_in_virtualenv(): """ Check virtualenv membership dynamically :return: True or false depending on whether we are in a regular virtualenv or not :rtype: bool """ pipenv_active = os.environ.get("PIPENV_ACTIVE", False) virtual_env = None use_system = False ignore_virtualenvs = b...

[ "def", "is_in_virtualenv", "(", ")", ":", "pipenv_active", "=", "os", ".", "environ", ".", "get", "(", "\"PIPENV_ACTIVE\"", ",", "False", ")", "virtual_env", "=", "None", "use_system", "=", "False", "ignore_virtualenvs", "=", "bool", "(", "os", ".", "environ...

34.647059

21.941176

def GetStoredHostname(self): """Retrieves the stored hostname. The hostname is determined based on the preprocessing information that is stored inside the storage file. Returns: str: hostname. """ store_number = len(self._hostnames) return self._hostnames.get(store_number, None)

[ "def", "GetStoredHostname", "(", "self", ")", ":", "store_number", "=", "len", "(", "self", ".", "_hostnames", ")", "return", "self", ".", "_hostnames", ".", "get", "(", "store_number", ",", "None", ")" ]

27.727273

16.636364

def floor(x, context=None): """ Return the next lower or equal integer to x. If the result is not exactly representable, it will be rounded according to the current context. Note that it's possible for the result to be larger than ``x``. See the documentation of the :func:`ceil` function for ...

[ "def", "floor", "(", "x", ",", "context", "=", "None", ")", ":", "return", "_apply_function_in_current_context", "(", "BigFloat", ",", "mpfr", ".", "mpfr_rint_floor", ",", "(", "BigFloat", ".", "_implicit_convert", "(", "x", ")", ",", ")", ",", "context", ...

27.545455

23.272727

def renames(from_path, to_path, user=None): """ Rename ``from_path`` to ``to_path``, creating parents as needed. """ to_dir = path.dirname(to_path) if to_dir: mkdir(to_dir, user=user) rename(from_path, to_path, user=user)

[ "def", "renames", "(", "from_path", ",", "to_path", ",", "user", "=", "None", ")", ":", "to_dir", "=", "path", ".", "dirname", "(", "to_path", ")", "if", "to_dir", ":", "mkdir", "(", "to_dir", ",", "user", "=", "user", ")", "rename", "(", "from_path"...

30.75

9

def to_bqm(self, model): """Given a pysmt model, return a bqm. Adds the values of the biases as determined by the SMT solver to a bqm. Args: model: A pysmt model. Returns: :obj:`dimod.BinaryQuadraticModel` """ linear = ((v, float(model.get_py_v...

[ "def", "to_bqm", "(", "self", ",", "model", ")", ":", "linear", "=", "(", "(", "v", ",", "float", "(", "model", ".", "get_py_value", "(", "bias", ")", ")", ")", "for", "v", ",", "bias", "in", "self", ".", "linear", ".", "items", "(", ")", ")", ...

33.263158

23.368421

def fai_from_bam(ref_file, bam_file, out_file, data): """Create a fai index with only contigs in the input BAM file. """ contigs = set([x.contig for x in idxstats(bam_file, data)]) if not utils.file_uptodate(out_file, bam_file): with open(ref.fasta_idx(ref_file, data["config"])) as in_handle: ...

[ "def", "fai_from_bam", "(", "ref_file", ",", "bam_file", ",", "out_file", ",", "data", ")", ":", "contigs", "=", "set", "(", "[", "x", ".", "contig", "for", "x", "in", "idxstats", "(", "bam_file", ",", "data", ")", "]", ")", "if", "not", "utils", "...

52.166667

16.25

def add_group(data_api, data_setters, group_index): """Add the data for a whole group. :param data_api the data api from where to get the data :param data_setters the class to push the data to :param group_index the index for this group""" group_type_ind = data_api.group_type_list[group_index] a...

[ "def", "add_group", "(", "data_api", ",", "data_setters", ",", "group_index", ")", ":", "group_type_ind", "=", "data_api", ".", "group_type_list", "[", "group_index", "]", "atom_count", "=", "len", "(", "data_api", ".", "group_list", "[", "group_type_ind", "]", ...

60.192308

22.653846

def _split_cell(cell, module): """ Split a hybrid %%sql cell into the Python code and the queries. Populates a module with the queries. Args: cell: the contents of the %%sql cell. module: the module that the contents will populate. Returns: The default (last) query for the module. """ line...

[ "def", "_split_cell", "(", "cell", ",", "module", ")", ":", "lines", "=", "cell", ".", "split", "(", "'\\n'", ")", "code", "=", "None", "last_def", "=", "-", "1", "name", "=", "None", "define_wild_re", "=", "re", ".", "compile", "(", "'^DEFINE\\s+.*$'"...

39.809524

24.261905

def _redis_notifier(state): """Notify of configuration update through redis. Arguments: state (_WaffleState): Object that contains reference to app and its configstore. """ tstamp = time.time() state._tstamp = tstamp conf = state.app.config # Notify timestamp r = re...

[ "def", "_redis_notifier", "(", "state", ")", ":", "tstamp", "=", "time", ".", "time", "(", ")", "state", ".", "_tstamp", "=", "tstamp", "conf", "=", "state", ".", "app", ".", "config", "# Notify timestamp", "r", "=", "redis", ".", "client", ".", "Stric...

28.642857

19

def main(command_line=True, **kwargs): """ NAME jr6_jr6_magic.py DESCRIPTION converts JR6 .jr6 format files to magic_measurements format files SYNTAX jr6_jr6_magic.py [command line options] OPTIONS -h: prints the help message and quits. -f FILE: specify i...

[ "def", "main", "(", "command_line", "=", "True", ",", "*", "*", "kwargs", ")", ":", "# initialize some stuff", "noave", "=", "0", "#volume=2.5**3 #default volume is a 2.5cm cube", "volume", "=", "2.5", "*", "1e-6", "#default volume is a 2.5 cm cube, translated to meters c...

40.420863

20.471223

def sql_datetime_literal(dt: DateTimeLikeType, subsecond: bool = False) -> str: """ Transforms a Python object that is of duck type ``datetime.datetime`` into an ANSI SQL literal string, like ``'2000-12-31 23:59:59'``, or if ``subsecond=True``, into the (non-ANSI) format ``'...

[ "def", "sql_datetime_literal", "(", "dt", ":", "DateTimeLikeType", ",", "subsecond", ":", "bool", "=", "False", ")", "->", "str", ":", "# ANSI SQL: http://www.contrib.andrew.cmu.edu/~shadow/sql/sql1992.txt", "# <timestamp string>", "# ... the subsecond part is non-ANSI", "fmt",...

45.692308

15.230769

def _compute_edges(self): """Compute the edges of the current surface. Returns: Tuple[~curve.Curve, ~curve.Curve, ~curve.Curve]: The edges of the surface. """ nodes1, nodes2, nodes3 = _surface_helpers.compute_edge_nodes( self._nodes, self._degree ...

[ "def", "_compute_edges", "(", "self", ")", ":", "nodes1", ",", "nodes2", ",", "nodes3", "=", "_surface_helpers", ".", "compute_edge_nodes", "(", "self", ".", "_nodes", ",", "self", ".", "_degree", ")", "edge1", "=", "_curve_mod", ".", "Curve", "(", "nodes1...

39.357143

19.857143

def coverage(args): """ %prog coverage fastafile ctg bedfile1 bedfile2 .. Plot coverage from a set of BED files that contain the read mappings. The paired read span will be converted to a new bedfile that contain the happy mates. ctg is the chr/scf/ctg that you want to plot the histogram on. I...

[ "def", "coverage", "(", "args", ")", ":", "from", "jcvi", ".", "formats", ".", "bed", "import", "mates", ",", "bedpe", "p", "=", "OptionParser", "(", "coverage", ".", "__doc__", ")", "p", ".", "add_option", "(", "\"--ymax\"", ",", "default", "=", "None...

33.246753

19.922078

def access_token(self): """return an Oauth 2.0 Bearer access token if it can be found""" access_token = self.get_auth_bearer() if not access_token: access_token = self.query_kwargs.get('access_token', '') if not access_token: access_token = self.body_kwarg...

[ "def", "access_token", "(", "self", ")", ":", "access_token", "=", "self", ".", "get_auth_bearer", "(", ")", "if", "not", "access_token", ":", "access_token", "=", "self", ".", "query_kwargs", ".", "get", "(", "'access_token'", ",", "''", ")", "if", "not",...

40.666667

17.111111

def get_property(host=None, admin_username=None, admin_password=None, property=None): ''' .. versionadded:: Fluorine Return specific property host The chassis host. admin_username The username used to access the chassis. admin_password The password used to access the ...

[ "def", "get_property", "(", "host", "=", "None", ",", "admin_username", "=", "None", ",", "admin_password", "=", "None", ",", "property", "=", "None", ")", ":", "if", "property", "is", "None", ":", "raise", "SaltException", "(", "'No property specified!'", "...

25.033333

25.566667

def fit_pRF_radius(ctx, retinotopy=Ellipsis, mask=None, weight=Ellipsis, slope_only=False): ''' fit_pRF_radius(ctx) fits a line, m*eccen + b, to the pRF radius and yields the tuple (m, b). The following options may be given: * retinotopy (default: Ellipsis) specifies the prefix for the retinotopy (pa...

[ "def", "fit_pRF_radius", "(", "ctx", ",", "retinotopy", "=", "Ellipsis", ",", "mask", "=", "None", ",", "weight", "=", "Ellipsis", ",", "slope_only", "=", "False", ")", ":", "rdat", "=", "retinotopy_data", "(", "ctx", ",", "retinotopy", ")", "if", "'radi...

53.131579

25.815789

def save(self, refreshing=None, next_action=None, json_last_refresh=None, data_blob=None): """ save or update the component on the Ariane server cache :param refreshing: the new refreshing value - default None and ignored :param next_action: the new next action - default None and ignored...

[ "def", "save", "(", "self", ",", "refreshing", "=", "None", ",", "next_action", "=", "None", ",", "json_last_refresh", "=", "None", ",", "data_blob", "=", "None", ")", ":", "LOGGER", ".", "debug", "(", "\"InjectorCachedComponent.save\"", ")", "ret", "=", "...

46.75

25.386364

def csiszar_vimco(f, p_log_prob, q, num_draws, num_batch_draws=1, seed=None, name=None): """Use VIMCO to lower the variance of gradient[csiszar_function(Avg(logu))]. This function generalizes VIMCO [(Mnih an...

[ "def", "csiszar_vimco", "(", "f", ",", "p_log_prob", ",", "q", ",", "num_draws", ",", "num_batch_draws", "=", "1", ",", "seed", "=", "None", ",", "name", "=", "None", ")", ":", "with", "tf", ".", "compat", ".", "v1", ".", "name_scope", "(", "name", ...

39.55102

23.132653

def get_db_driver(uri, username=None, password=None, encrypted=True, max_pool_size=50, trust=0): """ :param uri: Bolt uri :type uri: str :param username: Neo4j username :type username: str :param password: Neo4j password :type password: str :param encrypted: Use TLS :type encrypted: ...

[ "def", "get_db_driver", "(", "uri", ",", "username", "=", "None", ",", "password", "=", "None", ",", "encrypted", "=", "True", ",", "max_pool_size", "=", "50", ",", "trust", "=", "0", ")", ":", "return", "GraphDatabase", ".", "driver", "(", "uri", ",",...

39.157895

18.315789

def QAM_bb(N_symb,Ns,mod_type='16qam',pulse='rect',alpha=0.35): """ QAM_BB_TX: A complex baseband transmitter x,b,tx_data = QAM_bb(K,Ns,M) //////////// Inputs ////////////////////////////////////////////////// N_symb = the number of symbols to process Ns = number of samples per symbol ...

[ "def", "QAM_bb", "(", "N_symb", ",", "Ns", ",", "mod_type", "=", "'16qam'", ",", "pulse", "=", "'rect'", ",", "alpha", "=", "0.35", ")", ":", "# Filter the impulse train waveform with a square root raised", "# cosine pulse shape designed as follows:", "# Design the filter...

37.520548

16.643836

def roster(self, year): """Returns the roster table for the given year. :year: The year for which we want the roster; defaults to current year. :returns: A DataFrame containing roster information for that year. """ doc = self.get_year_doc('{}_roster'.format(year)) roster...

[ "def", "roster", "(", "self", ",", "year", ")", ":", "doc", "=", "self", ".", "get_year_doc", "(", "'{}_roster'", ".", "format", "(", "year", ")", ")", "roster_table", "=", "doc", "(", "'table#games_played_team'", ")", "df", "=", "sportsref", ".", "utils...

47.35

19.25

def _uminumaxvmin(self,*args,**kwargs): """ NAME: _uminumaxvmin PURPOSE: evaluate u_min, u_max, and v_min INPUT: Either: a) R,vR,vT,z,vz b) Orbit instance: initial condition used if that's it, orbit(t) if there...

[ "def", "_uminumaxvmin", "(", "self", ",", "*", "args", ",", "*", "*", "kwargs", ")", ":", "delta", "=", "kwargs", ".", "pop", "(", "'delta'", ",", "self", ".", "_delta", ")", "if", "(", "(", "self", ".", "_c", "and", "not", "(", "'c'", "in", "k...

42.695652

14.565217

def get_configured_provider(): ''' Return the first configured instance. ''' return config.is_provider_configured( __opts__, __active_provider_name__ or __virtualname__, ('auth', 'region_name'), log_message=False, ) or config.is_provider_configured( __opts__, __active_provide...

[ "def", "get_configured_provider", "(", ")", ":", "return", "config", ".", "is_provider_configured", "(", "__opts__", ",", "__active_provider_name__", "or", "__virtualname__", ",", "(", "'auth'", ",", "'region_name'", ")", ",", "log_message", "=", "False", ",", ")"...

34.272727

16.090909

def start_monitor(self): """Start the monitor.""" stdout_file, stderr_file = self.new_log_files("monitor") process_info = ray.services.start_monitor( self._redis_address, stdout_file=stdout_file, stderr_file=stderr_file, autoscaling_config=self._ra...

[ "def", "start_monitor", "(", "self", ")", ":", "stdout_file", ",", "stderr_file", "=", "self", ".", "new_log_files", "(", "\"monitor\"", ")", "process_info", "=", "ray", ".", "services", ".", "start_monitor", "(", "self", ".", "_redis_address", ",", "stdout_fi...

50.363636

16.909091

def _get_hashed_path(self, path): """Returns an md5 hash for the specified file path.""" return self._get_path('%s.pkl' % hashlib.md5(path.encode("utf-8")).hexdigest())

[ "def", "_get_hashed_path", "(", "self", ",", "path", ")", ":", "return", "self", ".", "_get_path", "(", "'%s.pkl'", "%", "hashlib", ".", "md5", "(", "path", ".", "encode", "(", "\"utf-8\"", ")", ")", ".", "hexdigest", "(", ")", ")" ]

60.666667

18

def new_result(self, data_mode='value', time_mode='framewise'): ''' Create a new result Attributes ---------- data_object : MetadataObject id_metadata : MetadataObject audio_metadata : MetadataObject frame_metadata : MetadataObject label_metadata ...

[ "def", "new_result", "(", "self", ",", "data_mode", "=", "'value'", ",", "time_mode", "=", "'framewise'", ")", ":", "from", "datetime", "import", "datetime", "result", "=", "AnalyzerResult", "(", "data_mode", "=", "data_mode", ",", "time_mode", "=", "time_mode...

37.586957

20.5

def write_pkg_file(self, file): """Write the PKG-INFO format data to a file object. """ version = self.get_metadata_version() if six.PY2: def write_field(key, value): file.write("%s: %s\n" % (key, self._encode_field(value))) else: def write_field(key, value): ...

[ "def", "write_pkg_file", "(", "self", ",", "file", ")", ":", "version", "=", "self", ".", "get_metadata_version", "(", ")", "if", "six", ".", "PY2", ":", "def", "write_field", "(", "key", ",", "value", ")", ":", "file", ".", "write", "(", "\"%s: %s\\n\...

32.72973

16.567568

def _convert_nominal_form( analysis ): ''' Converts nominal categories of the input analysis. Performs one-to-one conversions only. ''' assert FORM in analysis, '(!) The input analysis does not contain "'+FORM+'" key.' for idx, pattern_items in enumerate(_noun_conversion_rules): pattern_str...

[ "def", "_convert_nominal_form", "(", "analysis", ")", ":", "assert", "FORM", "in", "analysis", ",", "'(!) The input analysis does not contain \"'", "+", "FORM", "+", "'\" key.'", "for", "idx", ",", "pattern_items", "in", "enumerate", "(", "_noun_conversion_rules", ")"...

53.555556

18.666667

def run(self, conf, arg, err): """ WeldContext is currently hidden from the Python API. We create a new context per Weld run and give ownership of it to the resulting value. NOTE: This can leak the context if the result of the Weld run is an error. """ weld_conte...

[ "def", "run", "(", "self", ",", "conf", ",", "arg", ",", "err", ")", ":", "weld_context_new", "=", "weld", ".", "weld_context_new", "weld_context_new", ".", "argtypes", "=", "[", "c_weld_conf", "]", "weld_context_new", ".", "restype", "=", "c_weld_context", ...

41.6

16.9

def staticMovingAverage2(x, N=3, mode='reflect'): """ moving average filter for 1d arrays supported modes for boundary handling: 'reflect' , 'constant' """ assert N > 1 x2 = np.empty(shape=x.shape[0] + N, dtype=x.dtype) start = N - 2 if N == 2: start = 1 end = N - start ...

[ "def", "staticMovingAverage2", "(", "x", ",", "N", "=", "3", ",", "mode", "=", "'reflect'", ")", ":", "assert", "N", ">", "1", "x2", "=", "np", ".", "empty", "(", "shape", "=", "x", ".", "shape", "[", "0", "]", "+", "N", ",", "dtype", "=", "x...

25.382353

18.558824

def repair(source, validate_archive=False): """Use auditwheel (https://github.com/pypa/auditwheel) to attempt and repair all wheels in a wagon. The repair process will: 1. Extract the wagon and its metadata 2. Repair all wheels 3. Update the metadata with the new wheel names and platform 4...

[ "def", "repair", "(", "source", ",", "validate_archive", "=", "False", ")", ":", "_assert_auditwheel_exists", "(", ")", "logger", ".", "info", "(", "'Repairing: %s'", ",", "source", ")", "processed_source", "=", "get_source", "(", "source", ")", "metadata", "=...

33.380952

13.452381

async def teardown_conn(self, context): """Teardown a connection from a client.""" client_id = context.user_data self._logger.info("Tearing down client connection: %s", client_id) if client_id not in self.clients: self._logger.warning("client_id %s did not exist in teardown...

[ "async", "def", "teardown_conn", "(", "self", ",", "context", ")", ":", "client_id", "=", "context", ".", "user_data", "self", ".", "_logger", ".", "info", "(", "\"Tearing down client connection: %s\"", ",", "client_id", ")", "if", "client_id", "not", "in", "s...

38.3

19.7

def load_dict(self, source, namespace=''): """ Load values from a dictionary structure. Nesting can be used to represent namespaces. >>> c = ConfigDict() >>> c.load_dict({'some': {'namespace': {'key': 'value'} } }) {'some.namespace.key': 'value'} """ ...

[ "def", "load_dict", "(", "self", ",", "source", ",", "namespace", "=", "''", ")", ":", "for", "key", ",", "value", "in", "source", ".", "items", "(", ")", ":", "if", "isinstance", "(", "key", ",", "str", ")", ":", "nskey", "=", "(", "namespace", ...

39.833333

13.166667

def _psicomputations(self, kern, Z, variational_posterior, return_psi2_n=False): """ Z - MxQ mu - NxQ S - NxQ """ variance, lengthscale = kern.variance, kern.lengthscale N,M,Q = self.get_dimensions(Z, variational_posterior) self._initGPUCache(N,M,Q) ...

[ "def", "_psicomputations", "(", "self", ",", "kern", ",", "Z", ",", "variational_posterior", ",", "return_psi2_n", "=", "False", ")", ":", "variance", ",", "lengthscale", "=", "kern", ".", "variance", ",", "kern", ".", "lengthscale", "N", ",", "M", ",", ...

58.567568

35.756757

def parse_code(self): """ Read the source code and return all the import statements. Returns: list of dict: the import statements. """ code = open(self.path, encoding='utf-8').read() try: body = ast.parse(code).body except SyntaxError: ...

[ "def", "parse_code", "(", "self", ")", ":", "code", "=", "open", "(", "self", ".", "path", ",", "encoding", "=", "'utf-8'", ")", ".", "read", "(", ")", "try", ":", "body", "=", "ast", ".", "parse", "(", "code", ")", ".", "body", "except", "Syntax...

29.470588

13.588235

def is_multifile_object_without_children(self, location: str) -> bool: """ Returns True if an item with this location is present as a multifile object without children. For this implementation, this means that there is a file with the appropriate name but without extension :param locati...

[ "def", "is_multifile_object_without_children", "(", "self", ",", "location", ":", "str", ")", "->", "bool", ":", "# (1) Find the base directory and base name", "if", "isdir", "(", "location", ")", ":", "# special case: parent location is the root folder where all the files are....

48.888889

30.222222

def download_file_job(entry, directory, checksums, filetype='genbank', symlink_path=None): """Generate a DownloadJob that actually triggers a file download.""" pattern = NgdConfig.get_fileending(filetype) filename, expected_checksum = get_name_and_checksum(checksums, pattern) base_url = convert_ftp_url(...

[ "def", "download_file_job", "(", "entry", ",", "directory", ",", "checksums", ",", "filetype", "=", "'genbank'", ",", "symlink_path", "=", "None", ")", ":", "pattern", "=", "NgdConfig", ".", "get_fileending", "(", "filetype", ")", "filename", ",", "expected_ch...

44.375

19.75

def random_uniform(attrs, inputs, proto_obj): """Draw random samples from a uniform distribtuion.""" try: from onnx.mapping import TENSOR_TYPE_TO_NP_TYPE except ImportError: raise ImportError("Onnx and protobuf need to be installed. " "Instructions to install - http...

[ "def", "random_uniform", "(", "attrs", ",", "inputs", ",", "proto_obj", ")", ":", "try", ":", "from", "onnx", ".", "mapping", "import", "TENSOR_TYPE_TO_NP_TYPE", "except", "ImportError", ":", "raise", "ImportError", "(", "\"Onnx and protobuf need to be installed. \"",...

53.4

21.4

def fact(name, puppet=False): ''' Run facter for a specific fact CLI Example: .. code-block:: bash salt '*' puppet.fact kernel ''' opt_puppet = '--puppet' if puppet else '' ret = __salt__['cmd.run_all']( 'facter {0} {1}'.format(opt_puppet, name), python_she...

[ "def", "fact", "(", "name", ",", "puppet", "=", "False", ")", ":", "opt_puppet", "=", "'--puppet'", "if", "puppet", "else", "''", "ret", "=", "__salt__", "[", "'cmd.run_all'", "]", "(", "'facter {0} {1}'", ".", "format", "(", "opt_puppet", ",", "name", "...

21.857143

20.904762

def get_project(self, project_id): """ Get project info """ try: result = self._request('/getproject/', {'projectid': project_id}) return TildaProject(**result) except NetworkError: return []

[ "def", "get_project", "(", "self", ",", "project_id", ")", ":", "try", ":", "result", "=", "self", ".", "_request", "(", "'/getproject/'", ",", "{", "'projectid'", ":", "project_id", "}", ")", "return", "TildaProject", "(", "*", "*", "result", ")", "exce...

34.875

12.125

def jr6_jr6(mag_file, dir_path=".", input_dir_path="", meas_file="measurements.txt", spec_file="specimens.txt", samp_file="samples.txt", site_file="sites.txt", loc_file="locations.txt", specnum=1, samp_con='1', location='unknown', lat='', lon='', noave=False, meth_code="L...

[ "def", "jr6_jr6", "(", "mag_file", ",", "dir_path", "=", "\".\"", ",", "input_dir_path", "=", "\"\"", ",", "meas_file", "=", "\"measurements.txt\"", ",", "spec_file", "=", "\"specimens.txt\"", ",", "samp_file", "=", "\"samples.txt\"", ",", "site_file", "=", "\"s...

42.581749

20.087452

def community_topic_show(self, id, **kwargs): "https://developer.zendesk.com/rest_api/docs/help_center/topics#show-topic" api_path = "/api/v2/community/topics/{id}.json" api_path = api_path.format(id=id) return self.call(api_path, **kwargs)

[ "def", "community_topic_show", "(", "self", ",", "id", ",", "*", "*", "kwargs", ")", ":", "api_path", "=", "\"/api/v2/community/topics/{id}.json\"", "api_path", "=", "api_path", ".", "format", "(", "id", "=", "id", ")", "return", "self", ".", "call", "(", ...

53.6

13.6

def init_state_from_encoder(self, encoder_outputs, encoder_valid_length=None): """Initialize the state from the encoder outputs. Parameters ---------- encoder_outputs : list encoder_valid_length : NDArray or None Returns ------- decoder_states : list ...

[ "def", "init_state_from_encoder", "(", "self", ",", "encoder_outputs", ",", "encoder_valid_length", "=", "None", ")", ":", "mem_value", ",", "rnn_states", "=", "encoder_outputs", "batch_size", ",", "_", ",", "mem_size", "=", "mem_value", ".", "shape", "attention_v...

37.965517

16.517241

def targeted_dropout(inputs, k, keep_prob, targeting_fn, is_training, do_prune=False): """Applies targeted dropout. Applies dropout at a rate of `1 - keep_prob` to only those elements of `inputs` marked by `t...

[ "def", "targeted_dropout", "(", "inputs", ",", "k", ",", "keep_prob", ",", "targeting_fn", ",", "is_training", ",", "do_prune", "=", "False", ")", ":", "if", "not", "is_training", "and", "do_prune", ":", "k", "=", "tf", ".", "round", "(", "to_float", "("...

37.619048

22.071429

def update_roles(self, roles='view'): """ Updates the roles of this permission :return: Success / Failure :rtype: bool """ if not self.object_id: return False url = self.build_url(self._endpoints.get('permission').format( driveitem_id=self.drivei...

[ "def", "update_roles", "(", "self", ",", "roles", "=", "'view'", ")", ":", "if", "not", "self", ".", "object_id", ":", "return", "False", "url", "=", "self", ".", "build_url", "(", "self", ".", "_endpoints", ".", "get", "(", "'permission'", ")", ".", ...

29.52

17.64

def getComponentByName(self, name, default=noValue, instantiate=True): """Returns |ASN.1| type component by name. Equivalent to Python :class:`dict` subscription operation (e.g. `[]`). Parameters ---------- name: :class:`str` |ASN.1| type component name Key...

[ "def", "getComponentByName", "(", "self", ",", "name", ",", "default", "=", "noValue", ",", "instantiate", "=", "True", ")", ":", "if", "self", ".", "_componentTypeLen", ":", "idx", "=", "self", ".", "componentType", ".", "getPositionByName", "(", "name", ...

35.361111

25.388889

def copy(self, **replacements): """Returns a clone of this JarDependency with the given replacements kwargs overlaid.""" cls = type(self) kwargs = self._asdict() for key, val in replacements.items(): if key == 'excludes': val = JarDependency._prepare_excludes(val) kwargs[key] = val ...

[ "def", "copy", "(", "self", ",", "*", "*", "replacements", ")", ":", "cls", "=", "type", "(", "self", ")", "kwargs", "=", "self", ".", "_asdict", "(", ")", "for", "key", ",", "val", "in", "replacements", ".", "items", "(", ")", ":", "if", "key", ...

37.909091

8.818182

def wns_send_message( uri, message=None, xml_data=None, raw_data=None, application_id=None, **kwargs ): """ Sends a notification request to WNS. There are four notification types that WNS can send: toast, tile, badge and raw. Toast, tile, and badge can all be customized to use different templates/icons/sounds/lau...

[ "def", "wns_send_message", "(", "uri", ",", "message", "=", "None", ",", "xml_data", "=", "None", ",", "raw_data", "=", "None", ",", "application_id", "=", "None", ",", "*", "*", "kwargs", ")", ":", "# Create a simple toast notification", "if", "message", ":...

34.857143

24.31746

def page(self, status=values.unset, phone_number=values.unset, incoming_phone_number_sid=values.unset, friendly_name=values.unset, unique_name=values.unset, page_token=values.unset, page_number=values.unset, page_size=values.unset): """ Retrieve a single page of Ho...

[ "def", "page", "(", "self", ",", "status", "=", "values", ".", "unset", ",", "phone_number", "=", "values", ".", "unset", ",", "incoming_phone_number_sid", "=", "values", ".", "unset", ",", "friendly_name", "=", "values", ".", "unset", ",", "unique_name", ...

45.421053

23.842105

def get_yaml_decorators(rq): """ Returns the yaml decorator metadata only (this is needed by triple pattern fragments) """ # glogger.debug('Guessing decorators for query {}'.format(rq)) if not rq: return None if isinstance(rq, dict) and 'grlc' in rq: # json query (sparql transformer) ...

[ "def", "get_yaml_decorators", "(", "rq", ")", ":", "# glogger.debug('Guessing decorators for query {}'.format(rq))", "if", "not", "rq", ":", "return", "None", "if", "isinstance", "(", "rq", ",", "dict", ")", "and", "'grlc'", "in", "rq", ":", "# json query (sparql tr...

38.057143

22.685714

def open_tablebase(directory: PathLike, *, load_wdl: bool = True, load_dtz: bool = True, max_fds: Optional[int] = 128, VariantBoard: Type[chess.Board] = chess.Board) -> Tablebase: """ Opens a collection of tables for probing. See :class:`~chess.syzygy.Tablebase`. .. note:: Generally probing re...

[ "def", "open_tablebase", "(", "directory", ":", "PathLike", ",", "*", ",", "load_wdl", ":", "bool", "=", "True", ",", "load_dtz", ":", "bool", "=", "True", ",", "max_fds", ":", "Optional", "[", "int", "]", "=", "128", ",", "VariantBoard", ":", "Type", ...

49.882353

29.411765

def register(cls, namespace, name): """Class decorator""" def func(kind): cls._FOREIGN[(namespace, name)] = kind() return kind return func

[ "def", "register", "(", "cls", ",", "namespace", ",", "name", ")", ":", "def", "func", "(", "kind", ")", ":", "cls", ".", "_FOREIGN", "[", "(", "namespace", ",", "name", ")", "]", "=", "kind", "(", ")", "return", "kind", "return", "func" ]

25.857143

16

def is_unitary(self, atol=None, rtol=None): """Return True if QuantumChannel is a unitary channel.""" try: op = self.to_operator() return op.is_unitary(atol=atol, rtol=rtol) except QiskitError: return False

[ "def", "is_unitary", "(", "self", ",", "atol", "=", "None", ",", "rtol", "=", "None", ")", ":", "try", ":", "op", "=", "self", ".", "to_operator", "(", ")", "return", "op", ".", "is_unitary", "(", "atol", "=", "atol", ",", "rtol", "=", "rtol", ")...

37.142857

11.285714

def add_line(psr,f,A,offset=0.5): """ Add a line of frequency `f` [Hz] and amplitude `A` [s], with origin at a fraction `offset` through the dataset. """ t = psr.toas() t0 = offset * (N.max(t) - N.min(t)) sine = A * N.cos(2 * math.pi * f * day * (t - t0)) psr.stoas[:] += sine / day

[ "def", "add_line", "(", "psr", ",", "f", ",", "A", ",", "offset", "=", "0.5", ")", ":", "t", "=", "psr", ".", "toas", "(", ")", "t0", "=", "offset", "*", "(", "N", ".", "max", "(", "t", ")", "-", "N", ".", "min", "(", "t", ")", ")", "si...

28.181818

15.272727

def parse_sgf_to_examples(sgf_path): """Return supervised examples from positions NOTE: last move is not played because no p.next_move after. """ return zip(*[(p.position, p.next_move, p.result) for p in sgf_wrapper.replay_sgf_file(sgf_path)])

[ "def", "parse_sgf_to_examples", "(", "sgf_path", ")", ":", "return", "zip", "(", "*", "[", "(", "p", ".", "position", ",", "p", ".", "next_move", ",", "p", ".", "result", ")", "for", "p", "in", "sgf_wrapper", ".", "replay_sgf_file", "(", "sgf_path", ")...

33.875

18

def release_address(self, address): """ Release a previously allocated address returned by C{allocate_address}. @return: C{True} if the operation succeeded. """ query = self.query_factory( action="ReleaseAddress", creds=self.creds, endpoint=self.endpoint, ...

[ "def", "release_address", "(", "self", ",", "address", ")", ":", "query", "=", "self", ".", "query_factory", "(", "action", "=", "\"ReleaseAddress\"", ",", "creds", "=", "self", ".", "creds", ",", "endpoint", "=", "self", ".", "endpoint", ",", "other_param...

38.909091

15.818182

def _initstr(modname, imports, from_imports, inject_execstr, withheader=True): """ Calls the other string makers """ header = _make_module_header() if withheader else '' import_str = _make_imports_str(imports, modname) fromimport_str = _make_fromimport_str(from_imports, modname) initstr ...

[ "def", "_initstr", "(", "modname", ",", "imports", ",", "from_imports", ",", "inject_execstr", ",", "withheader", "=", "True", ")", ":", "header", "=", "_make_module_header", "(", ")", "if", "withheader", "else", "''", "import_str", "=", "_make_imports_str", "...

39

18.583333

def close(self): """close() Disconnects the object from the bus. """ os.close(self._fd) self._fd = -1 self._addr = -1 self._pec = 0

[ "def", "close", "(", "self", ")", ":", "os", ".", "close", "(", "self", ".", "_fd", ")", "self", ".", "_fd", "=", "-", "1", "self", ".", "_addr", "=", "-", "1", "self", ".", "_pec", "=", "0" ]

20

15.222222

def name(self): """ Similar to :attr:`complete`, but return the whole word, for example:: subrout would return `subroutine`. """ if hasattr(self._element, "name"): return self._element.name else: return str(self._element)

[ "def", "name", "(", "self", ")", ":", "if", "hasattr", "(", "self", ".", "_element", ",", "\"name\"", ")", ":", "return", "self", ".", "_element", ".", "name", "else", ":", "return", "str", "(", "self", ".", "_element", ")" ]

23.307692

16.692308

def load_reconstruction(folder, slice_start=0, slice_end=-1): """Load a volume from folder, also returns the corresponding partition. Parameters ---------- folder : str Path to the folder where the DICOM files are stored. slice_start : int Index of the first slice to use. Used for s...

[ "def", "load_reconstruction", "(", "folder", ",", "slice_start", "=", "0", ",", "slice_end", "=", "-", "1", ")", ":", "file_names", "=", "sorted", "(", "[", "f", "for", "f", "in", "os", ".", "listdir", "(", "folder", ")", "if", "f", ".", "endswith", ...

35.411765

22.333333

def list_receivers(self): """ Prints a list of all registered receivers. Including signal, plugin name and description. """ print("Receiver list") print("*************\n") for key, receiver in self.app.signals.receivers.items(): print("%s <-- %s (%s):\n %s\n"...

[ "def", "list_receivers", "(", "self", ")", ":", "print", "(", "\"Receiver list\"", ")", "print", "(", "\"*************\\n\"", ")", "for", "key", ",", "receiver", "in", "self", ".", "app", ".", "signals", ".", "receivers", ".", "items", "(", ")", ":", "pr...

48.272727

19.545455

def _negf(ins): ''' Changes sign of top of the stack (48 bits) ''' output = _float_oper(ins.quad[2]) output.append('call __NEGF') output.extend(_fpush()) REQUIRES.add('negf.asm') return output

[ "def", "_negf", "(", "ins", ")", ":", "output", "=", "_float_oper", "(", "ins", ".", "quad", "[", "2", "]", ")", "output", ".", "append", "(", "'call __NEGF'", ")", "output", ".", "extend", "(", "_fpush", "(", ")", ")", "REQUIRES", ".", "add", "(",...

26.625

15.875

def _check_seismogenic_depths(self, upper_depth, lower_depth): ''' Checks the seismic depths for physical consistency :param float upper_depth: Upper seismogenic depth (km) :param float lower_depth: Lower seismogenic depth (km) ''' # Simple check ...

[ "def", "_check_seismogenic_depths", "(", "self", ",", "upper_depth", ",", "lower_depth", ")", ":", "# Simple check on depths", "if", "upper_depth", ":", "if", "upper_depth", "<", "0.", ":", "raise", "ValueError", "(", "'Upper seismogenic depth must be greater than'", "'...

36.740741

18.666667

def get_cached_colour(element, orbital, colours=None, cache=None): """Get a colour for a particular elemental and orbital combination. If the element is not specified in the colours dictionary, the cache is checked. If this element-orbital combination has not been chached before, a new colour is drawn ...

[ "def", "get_cached_colour", "(", "element", ",", "orbital", ",", "colours", "=", "None", ",", "cache", "=", "None", ")", ":", "if", "cache", "is", "None", ":", "cache", "=", "colour_cache", "def", "_get_colour_with_cache", "(", "element", ",", "orbital", "...

39.936709

23.253165