kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
async def get_match(self, m_id, force_update=False) -> Match: """ get a single match by id \|methcoro\| Args: m_id: match id force_update (default=False): True to force an update to the Challonge API Returns: Match Raises: APIExce...	[ "async", "def", "get_match", "(", "self", ",", "m_id", ",", "force_update", "=", "False", ")", "->", "Match", ":", "found_m", "=", "self", ".", "_find_match", "(", "m_id", ")", "if", "force_update", "or", "found_m", "is", "None", ":", "await", "self", ...	24.190476	21.285714
def get_policies_by_id(profile_manager, policy_ids): ''' Returns a list of policies with the specified ids. profile_manager Reference to the profile manager. policy_ids List of policy ids to retrieve. ''' try: return profile_manager.RetrieveContent(policy_ids) excep...	[ "def", "get_policies_by_id", "(", "profile_manager", ",", "policy_ids", ")", ":", "try", ":", "return", "profile_manager", ".", "RetrieveContent", "(", "policy_ids", ")", "except", "vim", ".", "fault", ".", "NoPermission", "as", "exc", ":", "log", ".", "except...	32	17.181818
def comm_grid(patch, cols, splits, divs, metric='Sorensen'): """ Calculates commonality as a function of distance for a gridded patch Parameters ---------- {0} divs : str Description of how to divide x_col and y_col. Unlike SAR and EAR, only one division can be given at a time. ...	[ "def", "comm_grid", "(", "patch", ",", "cols", ",", "splits", ",", "divs", ",", "metric", "=", "'Sorensen'", ")", ":", "(", "spp_col", ",", "count_col", ",", "x_col", ",", "y_col", ")", ",", "patch", "=", "_get_cols", "(", "[", "'spp_col'", ",", "'co...	34.986842	24.644737
def _setSmsMemory(self, readDelete=None, write=None): """ Set the current SMS memory to use for read/delete/write operations """ # Switch to the correct memory type if required if write != None and write != self._smsMemWrite: self.write() readDel = readDelete or self._sms...	[ "def", "_setSmsMemory", "(", "self", ",", "readDelete", "=", "None", ",", "write", "=", "None", ")", ":", "# Switch to the correct memory type if required", "if", "write", "!=", "None", "and", "write", "!=", "self", ".", "_smsMemWrite", ":", "self", ".", "writ...	54.583333	14.25
def mpfr_floordiv(rop, x, y, rnd): """ Given two MPFR numbers x and y, compute floor(x / y), rounded if necessary using the given rounding mode. The result is placed in 'rop'. """ # Algorithm notes # --------------- # A simple and obvious approach is to compute floor(x / y) exactly, and ...	[ "def", "mpfr_floordiv", "(", "rop", ",", "x", ",", "y", ",", "rnd", ")", ":", "# Algorithm notes", "# ---------------", "# A simple and obvious approach is to compute floor(x / y) exactly, and", "# then round to the nearest representable value using the given rounding", "# mode. Thi...	38.020408	23.408163
def select(self, domain_or_name, query='', next_token=None, consistent_read=False): """ Returns a set of Attributes for item names within domain_name that match the query. The query must be expressed in using the SELECT style syntax rather than the original SimpleDB query...	[ "def", "select", "(", "self", ",", "domain_or_name", ",", "query", "=", "''", ",", "next_token", "=", "None", ",", "consistent_read", "=", "False", ")", ":", "domain", ",", "domain_name", "=", "self", ".", "get_domain_and_name", "(", "domain_or_name", ")", ...	43.285714	20.485714
def ad_stat(data): """ Calculates the Anderson-Darling statistic for sorted values from U(0, 1). The statistic is not defined if any of the values is exactly 0 or 1. You will get infinity as a result and a divide-by-zero warning for such values. The warning can be silenced or raised using numpy.err...	[ "def", "ad_stat", "(", "data", ")", ":", "samples", "=", "len", "(", "data", ")", "factors", "=", "arange", "(", "1", ",", "2", "", "samples", ",", "2", ")", "return", "-", "samples", "-", "(", "factors", "", "log", "(", "data", "*", "(", "1"...	43.545455	24.090909
def _is_cow(path): ''' Check if the subvolume is copy on write ''' dirname = os.path.dirname(path) return 'C' not in __salt__['file.lsattr'](dirname)[path]	[ "def", "_is_cow", "(", "path", ")", ":", "dirname", "=", "os", ".", "path", ".", "dirname", "(", "path", ")", "return", "'C'", "not", "in", "__salt__", "[", "'file.lsattr'", "]", "(", "dirname", ")", "[", "path", "]" ]	28.333333	19.333333
def stats(request, server_name): """ Show server statistics. """ server_name = server_name.strip('/') data = _context_data({ 'title': _('Memcache Statistics for %s') % server_name, 'cache_stats': _get_cache_stats(server_name), }, request) return render_to_response('me...	[ "def", "stats", "(", "request", ",", "server_name", ")", ":", "server_name", "=", "server_name", ".", "strip", "(", "'/'", ")", "data", "=", "_context_data", "(", "{", "'title'", ":", "_", "(", "'Memcache Statistics for %s'", ")", "%", "server_name", ",", ...	33.272727	16.181818
def cleanup_lib(self): """ unload the previously loaded shared library """ if not self.using_openmp: #this if statement is necessary because shared libraries that use #OpenMP will core dump when unloaded, this is a well-known issue with OpenMP logging.debug('unloading...	[ "def", "cleanup_lib", "(", "self", ")", ":", "if", "not", "self", ".", "using_openmp", ":", "#this if statement is necessary because shared libraries that use", "#OpenMP will core dump when unloaded, this is a well-known issue with OpenMP", "logging", ".", "debug", "(", "'unloadi...	53.857143	18.285714
def use_partial_data(self, sample_pct:float=0.01, seed:int=None)->'ItemList': "Use only a sample of `sample_pct`of the full dataset and an optional `seed`." if seed is not None: np.random.seed(seed) rand_idx = np.random.permutation(range_of(self)) cut = int(sample_pct * len(self)) ...	[ "def", "use_partial_data", "(", "self", ",", "sample_pct", ":", "float", "=", "0.01", ",", "seed", ":", "int", "=", "None", ")", "->", "'ItemList'", ":", "if", "seed", "is", "not", "None", ":", "np", ".", "random", ".", "seed", "(", "seed", ")", "r...	57.333333	19
def _get_version_info(): """ Returns the currently-installed awslimitchecker version, and a best-effort attempt at finding the origin URL and commit/tag if installed from an editable git clone. :returns: awslimitchecker version :rtype: str """ if os.environ.get('VERSIONCHECK_DEBUG', '')...	[ "def", "_get_version_info", "(", ")", ":", "if", "os", ".", "environ", ".", "get", "(", "'VERSIONCHECK_DEBUG'", ",", "''", ")", "!=", "'true'", ":", "for", "lname", "in", "[", "'versionfinder'", ",", "'pip'", ",", "'git'", "]", ":", "l", "=", "logging"...	33.868421	16.5
def rewrite_with_operator_pm_cc(expr): """Try to rewrite expr using :class:`OperatorPlusMinusCC` Example: >>> A = OperatorSymbol('A', hs=1) >>> sum = A + A.dag() >>> sum2 = rewrite_with_operator_pm_cc(sum) >>> print(ascii(sum2)) A^(1) + c.c. """ # TODO: move thi...	[ "def", "rewrite_with_operator_pm_cc", "(", "expr", ")", ":", "# TODO: move this to the toolbox", "from", "qnet", ".", "algebra", ".", "toolbox", ".", "core", "import", "temporary_rules", "def", "_combine_operator_p_cc", "(", "A", ",", "B", ")", ":", "if", "B", "...	30.622642	15.792453
def iter_variants(self): """Iterate over marker information.""" for variant in self._bgen.iter_variant_info(): yield Variant( variant.name, CHROM_STR_ENCODE.get(variant.chrom, variant.chrom), variant.pos, [variant.a1, variant.a2], )	[ "def", "iter_variants", "(", "self", ")", ":", "for", "variant", "in", "self", ".", "_bgen", ".", "iter_variant_info", "(", ")", ":", "yield", "Variant", "(", "variant", ".", "name", ",", "CHROM_STR_ENCODE", ".", "get", "(", "variant", ".", "chrom", ",",...	39.125	15.375
def block(self, tofile="block.dat"): ''' 获取证券板块信息 :param tofile: :return: pd.dataFrame or None ''' with self.client.connect(*self.bestip): data = self.client.get_and_parse_block_info(tofile) return self.client.to_df(data)	[ "def", "block", "(", "self", ",", "tofile", "=", "\"block.dat\"", ")", ":", "with", "self", ".", "client", ".", "connect", "(", "*", "self", ".", "bestip", ")", ":", "data", "=", "self", ".", "client", ".", "get_and_parse_block_info", "(", "tofile", ")...	28.5	17.9
def add_child(self, u, v): ''' add child to search tree itself. Arguments: u {int} -- father id v {int} -- child id ''' if u == -1: self.root = v self.adj_list[v] = [] return if v not in self.adj_list[u]: s...	[ "def", "add_child", "(", "self", ",", "u", ",", "v", ")", ":", "if", "u", "==", "-", "1", ":", "self", ".", "root", "=", "v", "self", ".", "adj_list", "[", "v", "]", "=", "[", "]", "return", "if", "v", "not", "in", "self", ".", "adj_list", ...	26.666667	13.866667
def get_methods_names(public_properties): """ Generates the names of the fields where to inject the getter and setter methods :param public_properties: If True, returns the names of public property accessors, else of hidden property ones :return...	[ "def", "get_methods_names", "(", "public_properties", ")", ":", "if", "public_properties", ":", "prefix", "=", "ipopo_constants", ".", "IPOPO_PROPERTY_PREFIX", "else", ":", "prefix", "=", "ipopo_constants", ".", "IPOPO_HIDDEN_PROPERTY_PREFIX", "return", "(", "\"{0}{1}\"...	38.5	23.722222
def alerts(self, alert_level='High'): """Get a filtered list of alerts at the given alert level, and sorted by alert level.""" alerts = self.zap.core.alerts() alert_level_value = self.alert_levels[alert_level] alerts = sorted((a for a in alerts if self.alert_levels[a['risk']] >= alert_l...	[ "def", "alerts", "(", "self", ",", "alert_level", "=", "'High'", ")", ":", "alerts", "=", "self", ".", "zap", ".", "core", ".", "alerts", "(", ")", "alert_level_value", "=", "self", ".", "alert_levels", "[", "alert_level", "]", "alerts", "=", "sorted", ...	47.666667	24.333333
def SearchFetchable(session=None, **kwargs): """Search okcupid.com with the given parameters. Parameters are registered to this function through :meth:`~okcupyd.filter.Filters.register_filter_builder` of :data:`~okcupyd.html_search.search_filters`. :returns: A :class:`~okcupyd.util.fetchable.Fetchable`...	[ "def", "SearchFetchable", "(", "session", "=", "None", ",", "", "", "kwargs", ")", ":", "session", "=", "session", "or", "Session", ".", "login", "(", ")", "return", "util", ".", "Fetchable", ".", "fetch_marshall", "(", "SearchHTMLFetcher", "(", "session...	42.535714	18.357143
def run(args, kwargs): '''Returns True if successful, False if failure''' kwargs.setdefault('env', os.environ) kwargs.setdefault('shell', True) try: subprocess.check_call(' '.join(args), *kwargs) return True except subprocess.CalledProcessError: logger.debug('Error runn...	[ "def", "run", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "kwargs", ".", "setdefault", "(", "'env'", ",", "os", ".", "environ", ")", "kwargs", ".", "setdefault", "(", "'shell'", ",", "True", ")", "try", ":", "subprocess", ".", "check_call", ...	29.333333	18
def run(self, *args): """Show information about countries.""" params = self.parser.parse_args(args) ct = params.code_or_term if ct and len(ct) < 2: self.error('Code country or term must have 2 or more characters length') return CODE_INVALID_FORMAT_ERROR ...	[ "def", "run", "(", "self", ",", "*", "args", ")", ":", "params", "=", "self", ".", "parser", ".", "parse_args", "(", "args", ")", "ct", "=", "params", ".", "code_or_term", "if", "ct", "and", "len", "(", "ct", ")", "<", "2", ":", "self", ".", "e...	30.954545	21.909091
def die(self): """Time to quit""" log.info('Time to die') if self.connected: try: self.send('Die') except Exception: pass if self._socket: self._socket.close() self.pop()	[ "def", "die", "(", "self", ")", ":", "log", ".", "info", "(", "'Time to die'", ")", "if", "self", ".", "connected", ":", "try", ":", "self", ".", "send", "(", "'Die'", ")", "except", "Exception", ":", "pass", "if", "self", ".", "_socket", ":", "sel...	24.363636	14.363636
def sign_in(self, timeout=60, safe=True, tries=1, channel=None): ''' Send a sign in request to the master, sets the key information and returns a dict containing the master publish interface to bind to and the decrypted aes key for transport decryption. :param int timeout: Numbe...	[ "def", "sign_in", "(", "self", ",", "timeout", "=", "60", ",", "safe", "=", "True", ",", "tries", "=", "1", ",", "channel", "=", "None", ")", ":", "auth", "=", "{", "}", "auth_timeout", "=", "self", ".", "opts", ".", "get", "(", "'auth_timeout'", ...	49.436975	25.168067
def update(self, sparql_query_only=False, auto_refresh=None, update_binary=True): ''' Method to update resources in repository. Firing this method computes the difference in the local modified graph and the original one, creates an instance of SparqlUpdate and builds a sparql query that represents these differe...	[ "def", "update", "(", "self", ",", "sparql_query_only", "=", "False", ",", "auto_refresh", "=", "None", ",", "update_binary", "=", "True", ")", ":", "# run diff on graphs, send as PATCH request", "self", ".", "_diff_graph", "(", ")", "sq", "=", "SparqlUpdate", "...	38.8	29.261538
def pixel(self, x, y, size=None): """Return color for a pixel.""" if (size is None): size = self.sz # Have we go to the smallest element? if (size <= 3): if (_middle(x, y)): return (None) else: return (0, 0, 0) d...	[ "def", "pixel", "(", "self", ",", "x", ",", "y", ",", "size", "=", "None", ")", ":", "if", "(", "size", "is", "None", ")", ":", "size", "=", "self", ".", "sz", "# Have we go to the smallest element?", "if", "(", "size", "<=", "3", ")", ":", "if", ...	32.857143	11.928571
def create(customer, **data): """ Create a card instance. :param customer: the customer id or object :type customer: string\|Customer :param data: data required to create the card :return: The card resource :rtype resources.Card """ if isinstance(...	[ "def", "create", "(", "customer", ",", "", "", "data", ")", ":", "if", "isinstance", "(", "customer", ",", "resources", ".", "Customer", ")", ":", "customer", "=", "customer", ".", "id", "http_client", "=", "HttpClient", "(", ")", "response", ",", "_...	32.235294	15.647059
def get_inclusion_states(self, transactions, tips): # type: (Iterable[TransactionHash], Iterable[TransactionHash]) -> dict """ Get the inclusion states of a set of transactions. This is for determining if a transaction was accepted and confirmed by the network or not. You can sea...	[ "def", "get_inclusion_states", "(", "self", ",", "transactions", ",", "tips", ")", ":", "# type: (Iterable[TransactionHash], Iterable[TransactionHash]) -> dict", "return", "core", ".", "GetInclusionStatesCommand", "(", "self", ".", "adapter", ")", "(", "transactions", "="...	35.875	22.958333
def setup(config): """Setup persistence to be used in cinderlib. By default memory persistance will be used, but there are other mechanisms available and other ways to use custom mechanisms: - Persistence plugins: Plugin mechanism uses Python entrypoints under namespace cinderlib.persistence.sto...	[ "def", "setup", "(", "config", ")", ":", "if", "config", "is", "None", ":", "config", "=", "{", "}", "else", ":", "config", "=", "config", ".", "copy", "(", ")", "# Prevent driver dynamic loading clearing configuration options", "volume_cmd", ".", "CONF", ".",...	38.232558	22.744186
def run(self, root_allowed=False): """Start daemon mode :param bool root_allowed: Only used for ExecuteCmd :return: loop """ self.root_allowed = root_allowed scan_devices(self.on_push, lambda d: d.src.lower() in self.devices, self.settings.get('interface'))	[ "def", "run", "(", "self", ",", "root_allowed", "=", "False", ")", ":", "self", ".", "root_allowed", "=", "root_allowed", "scan_devices", "(", "self", ".", "on_push", ",", "lambda", "d", ":", "d", ".", "src", ".", "lower", "(", ")", "in", "self", "."...	37.375	18.75
def corner_grid(self): """Return a grid with only the corner points. Returns ------- cgrid : `RectGrid` Grid with size 2 in non-degenerate dimensions and 1 in degenerate ones Examples -------- >>> g = RectGrid([0, 1], [-1, 0, 2]) ...	[ "def", "corner_grid", "(", "self", ")", ":", "minmax_vecs", "=", "[", "]", "for", "axis", "in", "range", "(", "self", ".", "ndim", ")", ":", "if", "self", ".", "shape", "[", "axis", "]", "==", "1", ":", "minmax_vecs", ".", "append", "(", "self", ...	30.625	18.041667
def psffunc(self, x, y, z, **kwargs): """Calculates a pinhole psf""" #do_pinhole?? FIXME if self.polychromatic: func = psfcalc.calculate_polychrome_pinhole_psf else: func = psfcalc.calculate_pinhole_psf x0, y0 = [psfcalc.vec_to_halfvec(v) for v in [x,y]] ...	[ "def", "psffunc", "(", "self", ",", "x", ",", "y", ",", "z", ",", "", "", "kwargs", ")", ":", "#do_pinhole?? FIXME", "if", "self", ".", "polychromatic", ":", "func", "=", "psfcalc", ".", "calculate_polychrome_pinhole_psf", "else", ":", "func", "=", "ps...	40.7	13.5
def compare_branches_tags_commits(self, project_id, from_id, to_id): """ Compare branches, tags or commits :param project_id: The ID of a project :param from_id: the commit sha or branch name :param to_id: the commit sha or branch name :return: commit list and diff betwe...	[ "def", "compare_branches_tags_commits", "(", "self", ",", "project_id", ",", "from_id", ",", "to_id", ")", ":", "data", "=", "{", "'from'", ":", "from_id", ",", "'to'", ":", "to_id", "}", "request", "=", "requests", ".", "get", "(", "'{0}/{1}/repository/comp...	38.52381	19.190476
def local_attr_ancestors(self, name, context=None): """Iterate over the parents that define the given name. :param name: The name to find definitions for. :type name: str :returns: The parents that define the given name. :rtype: iterable(NodeNG) """ # Look up in...	[ "def", "local_attr_ancestors", "(", "self", ",", "name", ",", "context", "=", "None", ")", ":", "# Look up in the mro if we can. This will result in the", "# attribute being looked up just as Python does it.", "try", ":", "ancestors", "=", "self", ".", "mro", "(", "contex...	36.85	15.15
def do(self, fn, message=None, args, *kwargs): """Add a 'do' action to the steps. This is a function to execute :param fn: A function :param message: Message indicating what this function does (used for debugging if assertions fail) """ self.items.put(ChainItem(fn, self.do, me...	[ "def", "do", "(", "self", ",", "fn", ",", "message", "=", "None", ",", "", "args", ",", "", "", "kwargs", ")", ":", "self", ".", "items", ".", "put", "(", "ChainItem", "(", "fn", ",", "self", ".", "do", ",", "message", ",", "", "args", ",...	44.625	22.25
def hash(self): ''' :rtype: int :return: hash of the field ''' hashed = super(RandomBits, self).hash() return khash(hashed, self._min_length, self._max_length, self._num_mutations, self._step, self._seed)	[ "def", "hash", "(", "self", ")", ":", "hashed", "=", "super", "(", "RandomBits", ",", "self", ")", ".", "hash", "(", ")", "return", "khash", "(", "hashed", ",", "self", ".", "_min_length", ",", "self", ".", "_max_length", ",", "self", ".", "_num_muta...	35.142857	26.571429
def partition_version_classifiers( classifiers: t.Sequence[str], version_prefix: str = 'Programming Language :: Python :: ', only_suffix: str = ' :: Only') -> t.Tuple[t.List[str], t.List[str]]: """Find version number classifiers in given list and partition them into 2 groups.""" versions_min, ve...	[ "def", "partition_version_classifiers", "(", "classifiers", ":", "t", ".", "Sequence", "[", "str", "]", ",", "version_prefix", ":", "str", "=", "'Programming Language :: Python :: '", ",", "only_suffix", ":", "str", "=", "' :: Only'", ")", "->", "t", ".", "Tuple...	47	15.5625
def get_docker_secret(name, default=None, cast_to=str, autocast_name=True, getenv=True, safe=True, secrets_dir=os.path.join(root, 'var', 'run', 'secrets')): """This function fetches a docker secret :param name: the name of the docker secret :param default: the default value if no secr...	[ "def", "get_docker_secret", "(", "name", ",", "default", "=", "None", ",", "cast_to", "=", "str", ",", "autocast_name", "=", "True", ",", "getenv", "=", "True", ",", "safe", "=", "True", ",", "secrets_dir", "=", "os", ".", "path", ".", "join", "(", "...	35.589286	21.428571
def fetch(url, **kwargs): """Fetches an URL and returns the response. Parameters ---------- url : str An URL to crawl. spider_cls : scrapy.Spider (default: DefaultSpider) A spider class to be used in the crawler instance. capture_items : bool (default: True) If enabled, ...	[ "def", "fetch", "(", "url", ",", "", "", "kwargs", ")", ":", "timeout", "=", "kwargs", ".", "pop", "(", "'timeout'", ",", "DEFAULT_TIMEOUT", ")", "kwargs", "[", "'return_crawler'", "]", "=", "True", "crawler", "=", "wait_for", "(", "timeout", ",", "_...	32.342857	19.142857
def get_inventory_by_name(nme, character): """ returns the inventory index by name """ for ndx, sk in enumerate(character["inventory"]): #print("sk = ", sk, " , nme = ", nme) if sk["name"] == nme: return ndx return 0	[ "def", "get_inventory_by_name", "(", "nme", ",", "character", ")", ":", "for", "ndx", ",", "sk", "in", "enumerate", "(", "character", "[", "\"inventory\"", "]", ")", ":", "#print(\"sk = \", sk, \" , nme = \", nme)", "if", "sk", "[", "\"name\"", "]", "==", "nme...	25.6	11.8
def check_dataset(dataset): """Confirm shape (3 colors x rows x cols) and values [0 to 255] are OK.""" if isinstance(dataset, numpy.ndarray) and not len(dataset.shape) == 4: check_dataset_shape(dataset) check_dataset_range(dataset) else: # must be a list of arrays or a 4D NumPy array ...	[ "def", "check_dataset", "(", "dataset", ")", ":", "if", "isinstance", "(", "dataset", ",", "numpy", ".", "ndarray", ")", "and", "not", "len", "(", "dataset", ".", "shape", ")", "==", "4", ":", "check_dataset_shape", "(", "dataset", ")", "check_dataset_rang...	42.55	12.45
def im_open(self, , user: str, *kwargs) -> SlackResponse: """Opens a direct message channel. Args: user (str): The user id to open a DM with. e.g. 'W1234567890' """ kwargs.update({"user": user}) return self.api_call("im.open", json=kwargs)	[ "def", "im_open", "(", "self", ",", "", ",", "user", ":", "str", ",", "", "*", "kwargs", ")", "->", "SlackResponse", ":", "kwargs", ".", "update", "(", "{", "\"user\"", ":", "user", "}", ")", "return", "self", ".", "api_call", "(", "\"im.open\"", ...	35.875	16.75
def analyze(self): """Populate an enriched index by processing input items in blocks. :return: total number of out_items written. """ from_date = self._out.latest_date() if from_date: logger.info("Reading items since " + from_date) else: logger.in...	[ "def", "analyze", "(", "self", ")", ":", "from_date", "=", "self", ".", "_out", ".", "latest_date", "(", ")", "if", "from_date", ":", "logger", ".", "info", "(", "\"Reading items since \"", "+", "from_date", ")", "else", ":", "logger", ".", "info", "(", ...	39.209302	23.837209
def handle_version_flag(): """If the --version flag is passed, print version to stdout and exit. Within dsub commands, --version should be the highest priority flag. This function supplies a repeatable and DRY way of checking for the version flag and printing the version. Callers still need to define a version...	[ "def", "handle_version_flag", "(", ")", ":", "parser", "=", "argparse", ".", "ArgumentParser", "(", "description", "=", "'Version parser'", ",", "add_help", "=", "False", ")", "parser", ".", "add_argument", "(", "'--version'", ",", "'-v'", ",", "dest", "=", ...	46.066667	20.866667
def get_axis_variables(ds): ''' Returns a list of variables that define an axis of the dataset :param netCDF4.Dataset ds: An open netCDF4 Dataset ''' axis_variables = [] for ncvar in ds.get_variables_by_attributes(axis=lambda x: x is not None): axis_variables.append(ncvar.name) retu...	[ "def", "get_axis_variables", "(", "ds", ")", ":", "axis_variables", "=", "[", "]", "for", "ncvar", "in", "ds", ".", "get_variables_by_attributes", "(", "axis", "=", "lambda", "x", ":", "x", "is", "not", "None", ")", ":", "axis_variables", ".", "append", ...	32.8	23
def draw( self, show_tip_labels=True, show_node_support=False, use_edge_lengths=False, orient="right", print_args=False, args, *kwargs): """ plot the tree using toyplot.graph. Parameters: ----------- show_...	[ "def", "draw", "(", "self", ",", "show_tip_labels", "=", "True", ",", "show_node_support", "=", "False", ",", "use_edge_lengths", "=", "False", ",", "orient", "=", "\"right\"", ",", "print_args", "=", "False", ",", "", "args", ",", "", "*", "kwargs", "...	30.361111	18.027778
def initialize_view(self): """Clean the tree and view parameters""" self.clear() self.item_depth = 0 # To be use for collapsing/expanding one level self.item_list = [] # To be use for collapsing/expanding one level self.items_to_be_shown = {} self.current_view_de...	[ "def", "initialize_view", "(", "self", ")", ":", "self", ".", "clear", "(", ")", "self", ".", "item_depth", "=", "0", "# To be use for collapsing/expanding one level\r", "self", ".", "item_list", "=", "[", "]", "# To be use for collapsing/expanding one level\r", "self...	45.857143	16.285714
def infer_modifications(stmts): """Return inferred Modification from RegulateActivity + ActiveForm. This function looks for combinations of Activation/Inhibition Statements and ActiveForm Statements that imply a Modification Statement. For example, if we know that A activates B, and pho...	[ "def", "infer_modifications", "(", "stmts", ")", ":", "linked_stmts", "=", "[", "]", "for", "act_stmt", "in", "_get_statements_by_type", "(", "stmts", ",", "RegulateActivity", ")", ":", "for", "af_stmt", "in", "_get_statements_by_type", "(", "stmts", ",", "Activ...	46.37037	18.925926
def _fake_openassociatorinstancepaths(self, namespace, **params): # pylint: disable=invalid-name """ Implements WBEM server responder for :meth:`~pywbem.WBEMConnection.OpenAssociatorInstancePaths` with data from the instance repository. """ self._validate_namespac...	[ "def", "_fake_openassociatorinstancepaths", "(", "self", ",", "namespace", ",", "", "", "params", ")", ":", "# pylint: disable=invalid-name", "self", ".", "_validate_namespace", "(", "namespace", ")", "self", ".", "_validate_open_params", "(", "", "", "params", ...	39.5	16.944444
def free_sources(self, free=True, pars=None, cuts=None, distance=None, skydir=None, minmax_ts=None, minmax_npred=None, exclude=None, square=False, **kwargs): """Free or fix sources in the ROI model satisfying the given selection. When multiple selections are de...	[ "def", "free_sources", "(", "self", ",", "free", "=", "True", ",", "pars", "=", "None", ",", "cuts", "=", "None", ",", "distance", "=", "None", ",", "skydir", "=", "None", ",", "minmax_ts", "=", "None", ",", "minmax_npred", "=", "None", ",", "exclude...	37.676056	25.070423
def rmv_normal(mu, tau, size=1): """ Random multivariate normal variates. """ sig = np.linalg.cholesky(tau) mu_size = np.shape(mu) if size == 1: out = np.random.normal(size=mu_size) try: flib.dtrsm_wrap(sig, out, 'L', 'T', 'L', 1.) except: out = ...	[ "def", "rmv_normal", "(", "mu", ",", "tau", ",", "size", "=", "1", ")", ":", "sig", "=", "np", ".", "linalg", ".", "cholesky", "(", "tau", ")", "mu_size", "=", "np", ".", "shape", "(", "mu", ")", "if", "size", "==", "1", ":", "out", "=", "np"...	28.392857	15.535714
def make(self, apps): """ Create the report from application results """ for subreport in self.subreports: logger.debug('Make subreport "{0}"'.format(subreport.name)) subreport.make(apps) for subreport in self.subreports: subreport.compact_tab...	[ "def", "make", "(", "self", ",", "apps", ")", ":", "for", "subreport", "in", "self", ".", "subreports", ":", "logger", ".", "debug", "(", "'Make subreport \"{0}\"'", ".", "format", "(", "subreport", ".", "name", ")", ")", "subreport", ".", "make", "(", ...	31.6	11.2
def _download_csv_from_gdocs(self, trans_csv_path, meta_csv_path): """ Download csv from GDoc. :return: returns resource if worksheets are present :except: raises PODocsError with info if communication with GDocs lead to any errors """ try: en...	[ "def", "_download_csv_from_gdocs", "(", "self", ",", "trans_csv_path", ",", "meta_csv_path", ")", ":", "try", ":", "entry", "=", "self", ".", "gd_client", ".", "GetResourceById", "(", "self", ".", "key", ")", "self", ".", "gd_client", ".", "DownloadResource", ...	38.35	13.65
def sphere_example(): """A basic example of how to use the sphere agent.""" env = holodeck.make("MazeWorld") # This command is to constantly rotate to the right command = 2 for i in range(10): env.reset() for _ in range(1000): state, reward, terminal, _ = env.step(comman...	[ "def", "sphere_example", "(", ")", ":", "env", "=", "holodeck", ".", "make", "(", "\"MazeWorld\"", ")", "# This command is to constantly rotate to the right", "command", "=", "2", "for", "i", "in", "range", "(", "10", ")", ":", "env", ".", "reset", "(", ")",...	33.214286	17.285714
def prepare_intercept(callback): """ Registers a Windows low level keyboard hook. The provided callback will be invoked for each high-level keyboard event, and is expected to return True if the key event should be passed to the next program, or False if the event is to be blocked. No event is p...	[ "def", "prepare_intercept", "(", "callback", ")", ":", "_setup_name_tables", "(", ")", "def", "process_key", "(", "event_type", ",", "vk", ",", "scan_code", ",", "is_extended", ")", ":", "global", "shift_is_pressed", ",", "altgr_is_pressed", ",", "ignore_next_righ...	41.821918	21.164384
def _stream(self, context, message_factory): """write request/response into frames Transform request/response into protocol level message objects based on types and argstreams. Assumption: the chunk data read from stream can fit into memory. If arg stream is at init or streami...	[ "def", "_stream", "(", "self", ",", "context", ",", "message_factory", ")", ":", "args", "=", "[", "]", "try", ":", "for", "argstream", "in", "context", ".", "argstreams", ":", "chunk", "=", "yield", "argstream", ".", "read", "(", ")", "args", ".", "...	40.3	19.42
def _hdfs_datanode_metrics(self, beans, tags): """ Process HDFS Datanode metrics from given beans """ # Only get the first bean bean = next(iter(beans)) bean_name = bean.get('name') self.log.debug("Bean name retrieved: {}".format(bean_name)) for metric, ...	[ "def", "_hdfs_datanode_metrics", "(", "self", ",", "beans", ",", "tags", ")", ":", "# Only get the first bean", "bean", "=", "next", "(", "iter", "(", "beans", ")", ")", "bean_name", "=", "bean", ".", "get", "(", "'name'", ")", "self", ".", "log", ".", ...	37.857143	16.142857
def search(self, searchString, category="", math=False, game=False, searchFiles=False, extension=""): """Core function to search the indexes and return data""" data = [] nameData = {} fileData = {} #Search the name index if searchFiles: fileData = self.searchNamesIndex(self.fileIndex, fileData, search...	[ "def", "search", "(", "self", ",", "searchString", ",", "category", "=", "\"\"", ",", "math", "=", "False", ",", "game", "=", "False", ",", "searchFiles", "=", "False", ",", "extension", "=", "\"\"", ")", ":", "data", "=", "[", "]", "nameData", "=", ...	33.842105	25.894737
def get_ui_class(ui_file): """Get UI Python class from .ui file. Can be filename.ui or subdirectory/filename.ui :param ui_file: The file of the ui in safe.gui.ui :type ui_file: str """ os.path.sep.join(ui_file.split('/')) ui_file_path = os.path.abspath( os.path.join( ...	[ "def", "get_ui_class", "(", "ui_file", ")", ":", "os", ".", "path", ".", "sep", ".", "join", "(", "ui_file", ".", "split", "(", "'/'", ")", ")", "ui_file_path", "=", "os", ".", "path", ".", "abspath", "(", "os", ".", "path", ".", "join", "(", "os...	24.631579	16.631579
def color_electrodes(self, config_nr, ax): """ Color the electrodes used in specific configuration. Voltage electrodes are yellow, Current electrodes are red ?! """ electrodes = np.loadtxt(options.config_file, skiprows=1) electrodes = self.configs[~np.isnan(self.configs)....	[ "def", "color_electrodes", "(", "self", ",", "config_nr", ",", "ax", ")", ":", "electrodes", "=", "np", ".", "loadtxt", "(", "options", ".", "config_file", ",", "skiprows", "=", "1", ")", "electrodes", "=", "self", ".", "configs", "[", "~", "np", ".", ...	40.238095	12.904762
def idxmin(self, axis=0, skipna=True, args, *kwargs): """ Return the row label of the minimum value. If multiple values equal the minimum, the first row label with that value is returned. Parameters ---------- skipna : bool, default True Exclude NA...	[ "def", "idxmin", "(", "self", ",", "axis", "=", "0", ",", "skipna", "=", "True", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "skipna", "=", "nv", ".", "validate_argmin_with_skipna", "(", "skipna", ",", "args", ",", "kwargs", ")", "i", "=",...	29.318841	22.884058
def set_padist_gaussian_loss_cone(self, boundary_rad, expwidth): """Set the pitch-angle distribution to a Gaussian loss cone. Call signature boundary_rad The angle inside which there are no losses, in radians. expwidth The characteristic width of the Gaussia...	[ "def", "set_padist_gaussian_loss_cone", "(", "self", ",", "boundary_rad", ",", "expwidth", ")", ":", "self", ".", "in_vals", "[", "IN_VAL_PADIST", "]", "=", "PADIST_GLC", "self", ".", "in_vals", "[", "IN_VAL_LCBDY", "]", "=", "boundary_rad", "*", "180", "/", ...	36.727273	20.590909
def iter_entries(self): """ Generate an \|_IfdEntry\| instance corresponding to each entry in the directory. """ for idx in range(self._entry_count): dir_entry_offset = self._offset + 2 + (idx*12) ifd_entry = _IfdEntryFactory(self._stream_rdr, dir_entry_offs...	[ "def", "iter_entries", "(", "self", ")", ":", "for", "idx", "in", "range", "(", "self", ".", "_entry_count", ")", ":", "dir_entry_offset", "=", "self", ".", "_offset", "+", "2", "+", "(", "idx", "*", "12", ")", "ifd_entry", "=", "_IfdEntryFactory", "("...	38.111111	16.111111
def bodypart_types(self, method, input=True): """ Get a list of I{parameter definitions} (pdefs) defined for the specified method. An input I{pdef} is a (I{name}, L{xsd.sxbase.SchemaObject}) tuple, while an output I{pdef} is a L{xsd.sxbase.SchemaObject}. @param method: ...	[ "def", "bodypart_types", "(", "self", ",", "method", ",", "input", "=", "True", ")", ":", "if", "input", ":", "parts", "=", "method", ".", "soap", ".", "input", ".", "body", ".", "parts", "else", ":", "parts", "=", "method", ".", "soap", ".", "outp...	34.333333	17
def native(s, encoding='utf-8', fallback='iso-8859-1'): """Convert a given string into a native string.""" if isinstance(s, str): return s if str is unicode: # Python 3.x -> return unicodestr(s, encoding, fallback) return bytestring(s, encoding, fallback)	[ "def", "native", "(", "s", ",", "encoding", "=", "'utf-8'", ",", "fallback", "=", "'iso-8859-1'", ")", ":", "if", "isinstance", "(", "s", ",", "str", ")", ":", "return", "s", "if", "str", "is", "unicode", ":", "# Python 3.x ->", "return", "unicodestr", ...	28.2	18.6
def from_dict(cls, d): """ Returns a COHP object from a dict representation of the COHP. """ if "ICOHP" in d: icohp = {Spin(int(key)): np.array(val) for key, val in d["ICOHP"].items()} else: icohp = None return Cohp(d["efermi"...	[ "def", "from_dict", "(", "cls", ",", "d", ")", ":", "if", "\"ICOHP\"", "in", "d", ":", "icohp", "=", "{", "Spin", "(", "int", "(", "key", ")", ")", ":", "np", ".", "array", "(", "val", ")", "for", "key", ",", "val", "in", "d", "[", "\"ICOHP\"...	35.071429	15.928571
def last(self, count=1): """ Returns the last record in the query (sorting by id unless modified by `order_by`, whereupon it reverses the order passed in `order_by`). Returns None if the query has no records. """ if self._order_with: order = self._order_with.v...	[ "def", "last", "(", "self", ",", "count", "=", "1", ")", ":", "if", "self", ".", "_order_with", ":", "order", "=", "self", ".", "_order_with", ".", "values", "(", ")", "[", "0", "]", "order", "=", "\"desc\"", "if", "order", "==", "\"asc\"", "else",...	41.6875	14.9375
def embed_MDS(X, ndim=2, how='metric', distance_metric='euclidean', n_jobs=1, seed=None, verbose=0): """Performs classic, metric, and non-metric MDS Metric MDS is initialized using classic MDS, non-metric MDS is initialized using metric MDS. Parameters ---------- X: ndarray [n_sa...	[ "def", "embed_MDS", "(", "X", ",", "ndim", "=", "2", ",", "how", "=", "'metric'", ",", "distance_metric", "=", "'euclidean'", ",", "n_jobs", "=", "1", ",", "seed", "=", "None", ",", "verbose", "=", "0", ")", ":", "if", "how", "not", "in", "[", "'...	41.385714	19.157143
def clean_delete(self): """ Deletes this router & associated files (nvram, disks etc.) """ yield from self._hypervisor.send('vm clean_delete "{}"'.format(self._name)) self._hypervisor.devices.remove(self) try: yield from wait_run_in_executor(shutil.rmtree, se...	[ "def", "clean_delete", "(", "self", ")", ":", "yield", "from", "self", ".", "_hypervisor", ".", "send", "(", "'vm clean_delete \"{}\"'", ".", "format", "(", "self", ".", "_name", ")", ")", "self", ".", "_hypervisor", ".", "devices", ".", "remove", "(", "...	45.416667	26.416667
def populate_jobset(job, jobset, depth): """ Creates a set of jobs, containing jobs at difference depths of the dependency tree, retaining dependencies as strings, not Jobs. """ jobset.add(job) if len(job.dependencies) == 0: return jobset for j in job.dependencies: jobset = popul...	[ "def", "populate_jobset", "(", "job", ",", "jobset", ",", "depth", ")", ":", "jobset", ".", "add", "(", "job", ")", "if", "len", "(", "job", ".", "dependencies", ")", "==", "0", ":", "return", "jobset", "for", "j", "in", "job", ".", "dependencies", ...	35.9	11.6
def read_pmc(self, pmcid): """Read a given PMC article. Parameters ---------- pmcid : str The PMC ID of the article to read. Note that only articles in the open-access subset of PMC will work. """ msg = KQMLPerformative('REQUEST') msg.set(...	[ "def", "read_pmc", "(", "self", ",", "pmcid", ")", ":", "msg", "=", "KQMLPerformative", "(", "'REQUEST'", ")", "msg", ".", "set", "(", "'receiver'", ",", "'READER'", ")", "content", "=", "KQMLList", "(", "'run-pmcid'", ")", "content", ".", "sets", "(", ...	32.5	12
def check(self, file): """ Checks a given file against all available yara rules :param file: Path to file :type file:str :returns: Python list with matched rules info :rtype: list """ result = [] all_matches = [] for filerules in os.listdir...	[ "def", "check", "(", "self", ",", "file", ")", ":", "result", "=", "[", "]", "all_matches", "=", "[", "]", "for", "filerules", "in", "os", ".", "listdir", "(", "self", ".", "rulepaths", ")", ":", "try", ":", "rule", "=", "yara", ".", "compile", "...	41.8	18.2
def reset(self): """ Releases all entities held by this Unit Of Work (i.e., removes state information from all registered entities and clears the entity map). """ for ents in self.__entity_set_map.values(): for ent in ents: EntityState.release(ent, sel...	[ "def", "reset", "(", "self", ")", ":", "for", "ents", "in", "self", ".", "__entity_set_map", ".", "values", "(", ")", ":", "for", "ent", "in", "ents", ":", "EntityState", ".", "release", "(", "ent", ",", "self", ")", "self", ".", "__entity_set_map", ...	39.111111	14.222222
def Action(act, args, kw): """A factory for action objects.""" # Really simple: the _do_create_ routines do the heavy lifting. _do_create_keywords(args, kw) if is_List(act): return _do_create_list_action(act, kw) return _do_create_action(act, kw)	[ "def", "Action", "(", "act", ",", "", "args", ",", "", "", "kw", ")", ":", "# Really simple: the _do_create_ routines do the heavy lifting.", "_do_create_keywords", "(", "args", ",", "kw", ")", "if", "is_List", "(", "act", ")", ":", "return", "_do_create_lis...	38.857143	10.714286
def get_data_feed(self, train_mode=True, qname_in='input', qname_out='output', input_mapping=None): """Convenience function to access ``TFNode.DataFeed`` directly from this object instance.""" return TFNode.DataFeed(self.mgr, train_mode, qname_in, qname_out, input_mapping)	[ "def", "get_data_feed", "(", "self", ",", "train_mode", "=", "True", ",", "qname_in", "=", "'input'", ",", "qname_out", "=", "'output'", ",", "input_mapping", "=", "None", ")", ":", "return", "TFNode", ".", "DataFeed", "(", "self", ".", "mgr", ",", "trai...	93	34.333333
def make_avsc_object(json_data, names=None): # type: (Union[Dict[Text, Text], List[Any], Text], Optional[Names]) -> Schema """ Build Avro Schema from data parsed out of JSON string. @arg names: A Name object (tracks seen names and default space) """ if names is None: names = Names() ...	[ "def", "make_avsc_object", "(", "json_data", ",", "names", "=", "None", ")", ":", "# type: (Union[Dict[Text, Text], List[Any], Text], Optional[Names]) -> Schema", "if", "names", "is", "None", ":", "names", "=", "Names", "(", ")", "assert", "isinstance", "(", "names", ...	45.851064	17.595745
def agg_autocorrelation(x, param): r""" Calculates the value of an aggregation function :math:`f_{agg}` (e.g. the variance or the mean) over the autocorrelation :math:`R(l)` for different lags. The autocorrelation :math:`R(l)` for lag :math:`l` is defined as .. math:: R(l) = \frac{1}{(n-l)\sig...	[ "def", "agg_autocorrelation", "(", "x", ",", "param", ")", ":", "# if the time series is longer than the following threshold, we use fft to calculate the acf", "THRESHOLD_TO_USE_FFT", "=", "1250", "var", "=", "np", ".", "var", "(", "x", ")", "n", "=", "len", "(", "x",...	47.162791	35.465116
def boundary_maximum_exponential(graph, xxx_todo_changeme3): r""" Boundary term processing adjacent voxels maximum value using an exponential relationship. An implementation of a boundary term, suitable to be used with the `~medpy.graphcut.generate.graph_from_voxels` function. The same as...	[ "def", "boundary_maximum_exponential", "(", "graph", ",", "xxx_todo_changeme3", ")", ":", "(", "gradient_image", ",", "sigma", ",", "spacing", ")", "=", "xxx_todo_changeme3", "gradient_image", "=", "scipy", ".", "asarray", "(", "gradient_image", ")", "def", "bound...	39.355556	22.088889
def update_grammar_to_be_variable_free(grammar_dictionary: Dict[str, List[str]]): """ SQL is a predominately variable free language in terms of simple usage, in the sense that most queries do not create references to variables which are not already static tables in a dataset. However, it is possible to ...	[ "def", "update_grammar_to_be_variable_free", "(", "grammar_dictionary", ":", "Dict", "[", "str", ",", "List", "[", "str", "]", "]", ")", ":", "# Tables in variable free grammars cannot be aliased, so we", "# remove this functionality from the grammar.", "grammar_dictionary", "[...	53	24.771429
def clean_cornell_movies(filename='cornell_movie_dialogs_corpus.zip', subdir='cornell movie-dialogs corpus'): """ Load a dataframe of ~100k raw (uncollated) movie lines from the cornell movies dialog corpus >>> local_filepath = download_file(BIG_URLS['cornell_movie_dialogs_corpus'][0]) >>> df = clean_c...	[ "def", "clean_cornell_movies", "(", "filename", "=", "'cornell_movie_dialogs_corpus.zip'", ",", "subdir", "=", "'cornell movie-dialogs corpus'", ")", ":", "fullpath_zipfile", "=", "find_filepath", "(", "filename", ")", "dirname", "=", "os", ".", "path", ".", "basename...	49.107143	16.357143
def iter_files(self): """Iterate over files.""" # file_iter may be a callable or an iterator if callable(self.file_iter): return self.file_iter() return iter(self.file_iter)	[ "def", "iter_files", "(", "self", ")", ":", "# file_iter may be a callable or an iterator", "if", "callable", "(", "self", ".", "file_iter", ")", ":", "return", "self", ".", "file_iter", "(", ")", "return", "iter", "(", "self", ".", "file_iter", ")" ]	35.333333	7.5
def _get_self_bounds(self): """ Computes the bounds of the object itself (not including it's children) in the form [[lat_min, lon_min], [lat_max, lon_max]]. """ bounds = [[None, None], [None, None]] for point in self.data: bounds = [ [ ...	[ "def", "_get_self_bounds", "(", "self", ")", ":", "bounds", "=", "[", "[", "None", ",", "None", "]", ",", "[", "None", ",", "None", "]", "]", "for", "point", "in", "self", ".", "data", ":", "bounds", "=", "[", "[", "none_min", "(", "bounds", "[",...	31.684211	17.473684
def create_profile(): """If this is the user's first login, the create_or_login function will redirect here so that the user can set up his profile. """ if g.user is not None or 'openid' not in session: return redirect(url_for('index')) if request.method == 'POST': name = request.for...	[ "def", "create_profile", "(", ")", ":", "if", "g", ".", "user", "is", "not", "None", "or", "'openid'", "not", "in", "session", ":", "return", "redirect", "(", "url_for", "(", "'index'", ")", ")", "if", "request", ".", "method", "==", "'POST'", ":", "...	44.333333	14.722222
def change_password(self, usrname, oldpwd, newpwd, callback=None): ''' Change password. ''' params = {'usrName': usrname, 'oldPwd' : oldpwd, 'newPwd' : newpwd, } return self.execute_command('changePassword', ...	[ "def", "change_password", "(", "self", ",", "usrname", ",", "oldpwd", ",", "newpwd", ",", "callback", "=", "None", ")", ":", "params", "=", "{", "'usrName'", ":", "usrname", ",", "'oldPwd'", ":", "oldpwd", ",", "'newPwd'", ":", "newpwd", ",", "}", "ret...	35.4	16.8
def get(self, entry): """Gets an entry by key. Will return None if there is no matching entry.""" try: list = self.cache[entry.key] return list[list.index(entry)] except: return None	[ "def", "get", "(", "self", ",", "entry", ")", ":", "try", ":", "list", "=", "self", ".", "cache", "[", "entry", ".", "key", "]", "return", "list", "[", "list", ".", "index", "(", "entry", ")", "]", "except", ":", "return", "None" ]	30.5	11.375
def calcstats(data, t1, t2, sr): """Calculate the mean and standard deviation of some array between t1 and t2 provided the sample rate sr. """ dataseg = data[srt1:srt2] meandata = np.mean(dataseg[~np.isnan(dataseg)]) stddata = np.std(dataseg[~np.isnan(dataseg)]) return meandata, std...	[ "def", "calcstats", "(", "data", ",", "t1", ",", "t2", ",", "sr", ")", ":", "dataseg", "=", "data", "[", "sr", "", "t1", ":", "sr", "", "t2", "]", "meandata", "=", "np", ".", "mean", "(", "dataseg", "[", "~", "np", ".", "isnan", "(", "datas...	39.625	6.5
def _write_config_file(template_file): """ Write a config file to the source bundle location to identify the entry point. :param template_file: path to the task template subclass (executable) """ config_filename = '.cloud_harness_config.json' config_path = os.path.dirname...	[ "def", "_write_config_file", "(", "template_file", ")", ":", "config_filename", "=", "'.cloud_harness_config.json'", "config_path", "=", "os", ".", "path", ".", "dirname", "(", "template_file", ")", "filename", "=", "os", ".", "path", ".", "split", "(", "templat...	33.842105	20.368421
def _handle_subscribed(self, args, chanId=None, channel=None, *kwargs): """ Handles responses to subscribe() commands - registers a channel id with the client and assigns a data handler to it. :param chanId: int, represent channel id as assigned by server :param channel: str, ...	[ "def", "_handle_subscribed", "(", "self", ",", "", "args", ",", "chanId", "=", "None", ",", "channel", "=", "None", ",", "", "*", "kwargs", ")", ":", "log", ".", "debug", "(", "\"_handle_subscribed: %s - %s - %s\"", ",", "chanId", ",", "channel", ",", ...	30.833333	21.404762
def deployed(name, jboss_config, salt_source=None): '''Ensures that the given application is deployed on server. jboss_config: Dict with connection properties (see state description) salt_source: How to find the artifact to be deployed. target_file: Where to look...	[ "def", "deployed", "(", "name", ",", "jboss_config", ",", "salt_source", "=", "None", ")", ":", "log", ".", "debug", "(", "\" ======================== STATE: jboss7.deployed (name: %s) \"", ",", "name", ")", "ret", "=", "{", "'name'", ":", "name", ",", "'result'...	44.055556	31.796296
def _generic_definetext_parser(self, obj, rgb_struct): """Generic parser for the DefineTextN tags.""" obj.CharacterID = unpack_ui16(self._src) obj.TextBounds = self._get_struct_rect() obj.TextMatrix = self._get_struct_matrix() obj.GlyphBits = glyph_bits = unpack_ui8(self._src) ...	[ "def", "_generic_definetext_parser", "(", "self", ",", "obj", ",", "rgb_struct", ")", ":", "obj", ".", "CharacterID", "=", "unpack_ui16", "(", "self", ".", "_src", ")", "obj", ".", "TextBounds", "=", "self", ".", "_get_struct_rect", "(", ")", "obj", ".", ...	41.489796	13
def validate(defaults, metadata, config): """ Validate configuration. """ for path, _, default, parent, value in zip_dicts(defaults, config): if isinstance(default, Requirement): # validate the current value and assign the output parent[path[-1]] = default.validate(metad...	[ "def", "validate", "(", "defaults", ",", "metadata", ",", "config", ")", ":", "for", "path", ",", "_", ",", "default", ",", "parent", ",", "value", "in", "zip_dicts", "(", "defaults", ",", "config", ")", ":", "if", "isinstance", "(", "default", ",", ...	36.555556	15.666667
def is_predecessor_of_other(self, predecessor, others): """Returns whether the predecessor is a predecessor or a predecessor of a predecessor...of any of the others. Args: predecessor (str): The txn id of the predecessor. others (list(str)): The txn id of the successor. ...	[ "def", "is_predecessor_of_other", "(", "self", ",", "predecessor", ",", "others", ")", ":", "return", "any", "(", "predecessor", "in", "self", ".", "_predecessors_by_id", "[", "o", "]", "for", "o", "in", "others", ")" ]	31.142857	23.928571
def gen_items_from_sql_csv(s: str) -> Generator[str, None, None]: """ Splits a comma-separated list of quoted SQL values, with ``'`` as the quote character. Allows escaping of the quote character by doubling it. Returns the quotes (and escaped quotes) as part of the result. Allows newlines etc. with...	[ "def", "gen_items_from_sql_csv", "(", "s", ":", "str", ")", "->", "Generator", "[", "str", ",", "None", ",", "None", "]", ":", "# csv.reader will not both process the quotes and return the quotes;", "# we need them to distinguish e.g. NULL from 'NULL'.", "# log.warning('gen_ite...	37.3	18.4
async def enqueue_job( self, function: str, *args: Any, _job_id: Optional[str] = None, _defer_until: Optional[datetime] = None, _defer_by: Union[None, int, float, timedelta] = None, _expires: Union[None, int, float, timedelta] = None, _job_try: Optional[in...	[ "async", "def", "enqueue_job", "(", "self", ",", "function", ":", "str", ",", "*", "args", ":", "Any", ",", "_job_id", ":", "Optional", "[", "str", "]", "=", "None", ",", "_defer_until", ":", "Optional", "[", "datetime", "]", "=", "None", ",", "_defe...	38.583333	18.25
def parse(args): """ Define the available arguments """ from tzlocal import get_localzone try: timezone = get_localzone() if isinstance(timezone, pytz.BaseTzInfo): timezone = timezone.zone except Exception: # pragma: no cover timezone = 'UTC' if timezone...	[ "def", "parse", "(", "args", ")", ":", "from", "tzlocal", "import", "get_localzone", "try", ":", "timezone", "=", "get_localzone", "(", ")", "if", "isinstance", "(", "timezone", ",", "pytz", ".", "BaseTzInfo", ")", ":", "timezone", "=", "timezone", ".", ...	50.745283	26.613208
def get_significant_digits(numeric_value): """ Returns the precision for a given floatable value. If value is None or not floatable, returns None. Will return positive values if the result is below 1 and will return 0 values if the result is above or equal to 1. :param numeric_value: the value t...	[ "def", "get_significant_digits", "(", "numeric_value", ")", ":", "try", ":", "numeric_value", "=", "float", "(", "numeric_value", ")", "except", "(", "TypeError", ",", "ValueError", ")", ":", "return", "None", "if", "numeric_value", "==", "0", ":", "return", ...	35.884615	13.423077
def put_file(up_token, key, file_path, params=None, mime_type='application/octet-stream', check_crc=False, progress_handler=None, upload_progress_recorder=None, keep_last_modified=False): """上传文件到七牛 Args: up_token: 上传凭证 key: 上传文件名 file_path...	[ "def", "put_file", "(", "up_token", ",", "key", ",", "file_path", ",", "params", "=", "None", ",", "mime_type", "=", "'application/octet-stream'", ",", "check_crc", "=", "False", ",", "progress_handler", "=", "None", ",", "upload_progress_recorder", "=", "None",...	45.305556	22.277778
def validate(self): """ Validates the state of this XBlock. Subclasses should override validate_field_data() to validate fields and override this only for validation not related to this block's field values. """ validation = super(StudioEditableXBlockMixin, self).validat...	[ "def", "validate", "(", "self", ")", ":", "validation", "=", "super", "(", "StudioEditableXBlockMixin", ",", "self", ")", ".", "validate", "(", ")", "self", ".", "validate_field_data", "(", "validation", ",", "self", ")", "return", "validation" ]	39.1	20.1
def addButton( fnc, states=("On", "Off"), c=("w", "w"), bc=("dg", "dr"), pos=(20, 40), size=24, font="arial", bold=False, italic=False, alpha=1, angle=0, ): """Add a button to the renderer window. :param list states: a list of possible states ['On', 'Off'] :p...	[ "def", "addButton", "(", "fnc", ",", "states", "=", "(", "\"On\"", ",", "\"Off\"", ")", ",", "c", "=", "(", "\"w\"", ",", "\"w\"", ")", ",", "bc", "=", "(", "\"dg\"", ",", "\"dr\"", ")", ",", "pos", "=", "(", "20", ",", "40", ")", ",", "size"...	30.657895	19.447368
def _make_all_matchers(cls, parameters): ''' For every parameter, create a matcher if the parameter has an annotation. ''' for name, param in parameters: annotation = param.annotation if annotation is not Parameter.empty: yield name, cls._m...	[ "def", "_make_all_matchers", "(", "cls", ",", "parameters", ")", ":", "for", "name", ",", "param", "in", "parameters", ":", "annotation", "=", "param", ".", "annotation", "if", "annotation", "is", "not", "Parameter", ".", "empty", ":", "yield", "name", ","...	39.222222	17.222222
def update_intervals(self, back=None): ''' Return the update intervals for all of the enabled fileserver backends which support variable update intervals. ''' back = self.backends(back) ret = {} for fsb in back: fstr = '{0}.update_intervals'.format(fsb...	[ "def", "update_intervals", "(", "self", ",", "back", "=", "None", ")", ":", "back", "=", "self", ".", "backends", "(", "back", ")", "ret", "=", "{", "}", "for", "fsb", "in", "back", ":", "fstr", "=", "'{0}.update_intervals'", ".", "format", "(", "fsb...	34.5	16.5

async def get_match(self, m_id, force_update=False) -> Match: """ get a single match by id |methcoro| Args: m_id: match id force_update (default=False): True to force an update to the Challonge API Returns: Match Raises: APIExce...

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def get_policies_by_id(profile_manager, policy_ids): ''' Returns a list of policies with the specified ids. profile_manager Reference to the profile manager. policy_ids List of policy ids to retrieve. ''' try: return profile_manager.RetrieveContent(policy_ids) excep...

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32

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def comm_grid(patch, cols, splits, divs, metric='Sorensen'): """ Calculates commonality as a function of distance for a gridded patch Parameters ---------- {0} divs : str Description of how to divide x_col and y_col. Unlike SAR and EAR, only one division can be given at a time. ...

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def _setSmsMemory(self, readDelete=None, write=None): """ Set the current SMS memory to use for read/delete/write operations """ # Switch to the correct memory type if required if write != None and write != self._smsMemWrite: self.write() readDel = readDelete or self._sms...

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def mpfr_floordiv(rop, x, y, rnd): """ Given two MPFR numbers x and y, compute floor(x / y), rounded if necessary using the given rounding mode. The result is placed in 'rop'. """ # Algorithm notes # --------------- # A simple and obvious approach is to compute floor(x / y) exactly, and ...

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def select(self, domain_or_name, query='', next_token=None, consistent_read=False): """ Returns a set of Attributes for item names within domain_name that match the query. The query must be expressed in using the SELECT style syntax rather than the original SimpleDB query...

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def ad_stat(data): """ Calculates the Anderson-Darling statistic for sorted values from U(0, 1). The statistic is not defined if any of the values is exactly 0 or 1. You will get infinity as a result and a divide-by-zero warning for such values. The warning can be silenced or raised using numpy.err...

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43.545455

24.090909

def _is_cow(path): ''' Check if the subvolume is copy on write ''' dirname = os.path.dirname(path) return 'C' not in __salt__['file.lsattr'](dirname)[path]

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def stats(request, server_name): """ Show server statistics. """ server_name = server_name.strip('/') data = _context_data({ 'title': _('Memcache Statistics for %s') % server_name, 'cache_stats': _get_cache_stats(server_name), }, request) return render_to_response('me...

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def cleanup_lib(self): """ unload the previously loaded shared library """ if not self.using_openmp: #this if statement is necessary because shared libraries that use #OpenMP will core dump when unloaded, this is a well-known issue with OpenMP logging.debug('unloading...

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53.857143

18.285714

def use_partial_data(self, sample_pct:float=0.01, seed:int=None)->'ItemList': "Use only a sample of `sample_pct`of the full dataset and an optional `seed`." if seed is not None: np.random.seed(seed) rand_idx = np.random.permutation(range_of(self)) cut = int(sample_pct * len(self)) ...

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def _get_version_info(): """ Returns the currently-installed awslimitchecker version, and a best-effort attempt at finding the origin URL and commit/tag if installed from an editable git clone. :returns: awslimitchecker version :rtype: str """ if os.environ.get('VERSIONCHECK_DEBUG', '')...

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33.868421

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def rewrite_with_operator_pm_cc(expr): """Try to rewrite expr using :class:`OperatorPlusMinusCC` Example: >>> A = OperatorSymbol('A', hs=1) >>> sum = A + A.dag() >>> sum2 = rewrite_with_operator_pm_cc(sum) >>> print(ascii(sum2)) A^(1) + c.c. """ # TODO: move thi...

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def iter_variants(self): """Iterate over marker information.""" for variant in self._bgen.iter_variant_info(): yield Variant( variant.name, CHROM_STR_ENCODE.get(variant.chrom, variant.chrom), variant.pos, [variant.a1, variant.a2], )

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39.125

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def block(self, tofile="block.dat"): ''' 获取证券板块信息 :param tofile: :return: pd.dataFrame or None ''' with self.client.connect(*self.bestip): data = self.client.get_and_parse_block_info(tofile) return self.client.to_df(data)

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def add_child(self, u, v): ''' add child to search tree itself. Arguments: u {int} -- father id v {int} -- child id ''' if u == -1: self.root = v self.adj_list[v] = [] return if v not in self.adj_list[u]: s...

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def get_methods_names(public_properties): """ Generates the names of the fields where to inject the getter and setter methods :param public_properties: If True, returns the names of public property accessors, else of hidden property ones :return...

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38.5

23.722222

def alerts(self, alert_level='High'): """Get a filtered list of alerts at the given alert level, and sorted by alert level.""" alerts = self.zap.core.alerts() alert_level_value = self.alert_levels[alert_level] alerts = sorted((a for a in alerts if self.alert_levels[a['risk']] >= alert_l...

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47.666667

24.333333

def SearchFetchable(session=None, **kwargs): """Search okcupid.com with the given parameters. Parameters are registered to this function through :meth:`~okcupyd.filter.Filters.register_filter_builder` of :data:`~okcupyd.html_search.search_filters`. :returns: A :class:`~okcupyd.util.fetchable.Fetchable`...

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42.535714

18.357143

def run(*args, **kwargs): '''Returns True if successful, False if failure''' kwargs.setdefault('env', os.environ) kwargs.setdefault('shell', True) try: subprocess.check_call(' '.join(args), **kwargs) return True except subprocess.CalledProcessError: logger.debug('Error runn...

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def run(self, *args): """Show information about countries.""" params = self.parser.parse_args(args) ct = params.code_or_term if ct and len(ct) < 2: self.error('Code country or term must have 2 or more characters length') return CODE_INVALID_FORMAT_ERROR ...

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30.954545

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def die(self): """Time to quit""" log.info('Time to die') if self.connected: try: self.send('Die') except Exception: pass if self._socket: self._socket.close() self.pop()

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24.363636

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def sign_in(self, timeout=60, safe=True, tries=1, channel=None): ''' Send a sign in request to the master, sets the key information and returns a dict containing the master publish interface to bind to and the decrypted aes key for transport decryption. :param int timeout: Numbe...

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49.436975

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def update(self, sparql_query_only=False, auto_refresh=None, update_binary=True): ''' Method to update resources in repository. Firing this method computes the difference in the local modified graph and the original one, creates an instance of SparqlUpdate and builds a sparql query that represents these differe...

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38.8

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def pixel(self, x, y, size=None): """Return color for a pixel.""" if (size is None): size = self.sz # Have we go to the smallest element? if (size <= 3): if (_middle(x, y)): return (None) else: return (0, 0, 0) d...

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32.857143

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def create(customer, **data): """ Create a card instance. :param customer: the customer id or object :type customer: string|Customer :param data: data required to create the card :return: The card resource :rtype resources.Card """ if isinstance(...

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def get_inclusion_states(self, transactions, tips): # type: (Iterable[TransactionHash], Iterable[TransactionHash]) -> dict """ Get the inclusion states of a set of transactions. This is for determining if a transaction was accepted and confirmed by the network or not. You can sea...

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def setup(config): """Setup persistence to be used in cinderlib. By default memory persistance will be used, but there are other mechanisms available and other ways to use custom mechanisms: - Persistence plugins: Plugin mechanism uses Python entrypoints under namespace cinderlib.persistence.sto...

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def run(self, root_allowed=False): """Start daemon mode :param bool root_allowed: Only used for ExecuteCmd :return: loop """ self.root_allowed = root_allowed scan_devices(self.on_push, lambda d: d.src.lower() in self.devices, self.settings.get('interface'))

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def corner_grid(self): """Return a grid with only the corner points. Returns ------- cgrid : `RectGrid` Grid with size 2 in non-degenerate dimensions and 1 in degenerate ones Examples -------- >>> g = RectGrid([0, 1], [-1, 0, 2]) ...

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def psffunc(self, x, y, z, **kwargs): """Calculates a pinhole psf""" #do_pinhole?? FIXME if self.polychromatic: func = psfcalc.calculate_polychrome_pinhole_psf else: func = psfcalc.calculate_pinhole_psf x0, y0 = [psfcalc.vec_to_halfvec(v) for v in [x,y]] ...

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def compare_branches_tags_commits(self, project_id, from_id, to_id): """ Compare branches, tags or commits :param project_id: The ID of a project :param from_id: the commit sha or branch name :param to_id: the commit sha or branch name :return: commit list and diff betwe...

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def local_attr_ancestors(self, name, context=None): """Iterate over the parents that define the given name. :param name: The name to find definitions for. :type name: str :returns: The parents that define the given name. :rtype: iterable(NodeNG) """ # Look up in...

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def do(self, fn, message=None, *args, **kwargs): """Add a 'do' action to the steps. This is a function to execute :param fn: A function :param message: Message indicating what this function does (used for debugging if assertions fail) """ self.items.put(ChainItem(fn, self.do, me...

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def hash(self): ''' :rtype: int :return: hash of the field ''' hashed = super(RandomBits, self).hash() return khash(hashed, self._min_length, self._max_length, self._num_mutations, self._step, self._seed)

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def partition_version_classifiers( classifiers: t.Sequence[str], version_prefix: str = 'Programming Language :: Python :: ', only_suffix: str = ' :: Only') -> t.Tuple[t.List[str], t.List[str]]: """Find version number classifiers in given list and partition them into 2 groups.""" versions_min, ve...

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def get_docker_secret(name, default=None, cast_to=str, autocast_name=True, getenv=True, safe=True, secrets_dir=os.path.join(root, 'var', 'run', 'secrets')): """This function fetches a docker secret :param name: the name of the docker secret :param default: the default value if no secr...

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def fetch(url, **kwargs): """Fetches an URL and returns the response. Parameters ---------- url : str An URL to crawl. spider_cls : scrapy.Spider (default: DefaultSpider) A spider class to be used in the crawler instance. capture_items : bool (default: True) If enabled, ...

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def get_inventory_by_name(nme, character): """ returns the inventory index by name """ for ndx, sk in enumerate(character["inventory"]): #print("sk = ", sk, " , nme = ", nme) if sk["name"] == nme: return ndx return 0

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def check_dataset(dataset): """Confirm shape (3 colors x rows x cols) and values [0 to 255] are OK.""" if isinstance(dataset, numpy.ndarray) and not len(dataset.shape) == 4: check_dataset_shape(dataset) check_dataset_range(dataset) else: # must be a list of arrays or a 4D NumPy array ...

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def im_open(self, *, user: str, **kwargs) -> SlackResponse: """Opens a direct message channel. Args: user (str): The user id to open a DM with. e.g. 'W1234567890' """ kwargs.update({"user": user}) return self.api_call("im.open", json=kwargs)

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def analyze(self): """Populate an enriched index by processing input items in blocks. :return: total number of out_items written. """ from_date = self._out.latest_date() if from_date: logger.info("Reading items since " + from_date) else: logger.in...

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def handle_version_flag(): """If the --version flag is passed, print version to stdout and exit. Within dsub commands, --version should be the highest priority flag. This function supplies a repeatable and DRY way of checking for the version flag and printing the version. Callers still need to define a version...

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def get_axis_variables(ds): ''' Returns a list of variables that define an axis of the dataset :param netCDF4.Dataset ds: An open netCDF4 Dataset ''' axis_variables = [] for ncvar in ds.get_variables_by_attributes(axis=lambda x: x is not None): axis_variables.append(ncvar.name) retu...

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def draw( self, show_tip_labels=True, show_node_support=False, use_edge_lengths=False, orient="right", print_args=False, *args, **kwargs): """ plot the tree using toyplot.graph. Parameters: ----------- show_...

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def initialize_view(self): """Clean the tree and view parameters""" self.clear() self.item_depth = 0 # To be use for collapsing/expanding one level self.item_list = [] # To be use for collapsing/expanding one level self.items_to_be_shown = {} self.current_view_de...

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def infer_modifications(stmts): """Return inferred Modification from RegulateActivity + ActiveForm. This function looks for combinations of Activation/Inhibition Statements and ActiveForm Statements that imply a Modification Statement. For example, if we know that A activates B, and pho...

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def _fake_openassociatorinstancepaths(self, namespace, **params): # pylint: disable=invalid-name """ Implements WBEM server responder for :meth:`~pywbem.WBEMConnection.OpenAssociatorInstancePaths` with data from the instance repository. """ self._validate_namespac...

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def free_sources(self, free=True, pars=None, cuts=None, distance=None, skydir=None, minmax_ts=None, minmax_npred=None, exclude=None, square=False, **kwargs): """Free or fix sources in the ROI model satisfying the given selection. When multiple selections are de...

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def rmv_normal(mu, tau, size=1): """ Random multivariate normal variates. """ sig = np.linalg.cholesky(tau) mu_size = np.shape(mu) if size == 1: out = np.random.normal(size=mu_size) try: flib.dtrsm_wrap(sig, out, 'L', 'T', 'L', 1.) except: out = ...

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def make(self, apps): """ Create the report from application results """ for subreport in self.subreports: logger.debug('Make subreport "{0}"'.format(subreport.name)) subreport.make(apps) for subreport in self.subreports: subreport.compact_tab...

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def _download_csv_from_gdocs(self, trans_csv_path, meta_csv_path): """ Download csv from GDoc. :return: returns resource if worksheets are present :except: raises PODocsError with info if communication with GDocs lead to any errors """ try: en...

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def sphere_example(): """A basic example of how to use the sphere agent.""" env = holodeck.make("MazeWorld") # This command is to constantly rotate to the right command = 2 for i in range(10): env.reset() for _ in range(1000): state, reward, terminal, _ = env.step(comman...

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def prepare_intercept(callback): """ Registers a Windows low level keyboard hook. The provided callback will be invoked for each high-level keyboard event, and is expected to return True if the key event should be passed to the next program, or False if the event is to be blocked. No event is p...

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def _stream(self, context, message_factory): """write request/response into frames Transform request/response into protocol level message objects based on types and argstreams. Assumption: the chunk data read from stream can fit into memory. If arg stream is at init or streami...

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def _hdfs_datanode_metrics(self, beans, tags): """ Process HDFS Datanode metrics from given beans """ # Only get the first bean bean = next(iter(beans)) bean_name = bean.get('name') self.log.debug("Bean name retrieved: {}".format(bean_name)) for metric, ...

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def search(self, searchString, category="", math=False, game=False, searchFiles=False, extension=""): """Core function to search the indexes and return data""" data = [] nameData = {} fileData = {} #Search the name index if searchFiles: fileData = self.searchNamesIndex(self.fileIndex, fileData, search...

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def get_ui_class(ui_file): """Get UI Python class from .ui file. Can be filename.ui or subdirectory/filename.ui :param ui_file: The file of the ui in safe.gui.ui :type ui_file: str """ os.path.sep.join(ui_file.split('/')) ui_file_path = os.path.abspath( os.path.join( ...

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def color_electrodes(self, config_nr, ax): """ Color the electrodes used in specific configuration. Voltage electrodes are yellow, Current electrodes are red ?! """ electrodes = np.loadtxt(options.config_file, skiprows=1) electrodes = self.configs[~np.isnan(self.configs)....

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def idxmin(self, axis=0, skipna=True, *args, **kwargs): """ Return the row label of the minimum value. If multiple values equal the minimum, the first row label with that value is returned. Parameters ---------- skipna : bool, default True Exclude NA...

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def set_padist_gaussian_loss_cone(self, boundary_rad, expwidth): """Set the pitch-angle distribution to a Gaussian loss cone. **Call signature** *boundary_rad* The angle inside which there are no losses, in radians. *expwidth* The characteristic width of the Gaussia...

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def iter_entries(self): """ Generate an |_IfdEntry| instance corresponding to each entry in the directory. """ for idx in range(self._entry_count): dir_entry_offset = self._offset + 2 + (idx*12) ifd_entry = _IfdEntryFactory(self._stream_rdr, dir_entry_offs...

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def bodypart_types(self, method, input=True): """ Get a list of I{parameter definitions} (pdefs) defined for the specified method. An input I{pdef} is a (I{name}, L{xsd.sxbase.SchemaObject}) tuple, while an output I{pdef} is a L{xsd.sxbase.SchemaObject}. @param method: ...

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def native(s, encoding='utf-8', fallback='iso-8859-1'): """Convert a given string into a native string.""" if isinstance(s, str): return s if str is unicode: # Python 3.x -> return unicodestr(s, encoding, fallback) return bytestring(s, encoding, fallback)

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def from_dict(cls, d): """ Returns a COHP object from a dict representation of the COHP. """ if "ICOHP" in d: icohp = {Spin(int(key)): np.array(val) for key, val in d["ICOHP"].items()} else: icohp = None return Cohp(d["efermi"...

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def last(self, count=1): """ Returns the last record in the query (sorting by id unless modified by `order_by`, whereupon it reverses the order passed in `order_by`). Returns None if the query has no records. """ if self._order_with: order = self._order_with.v...

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def embed_MDS(X, ndim=2, how='metric', distance_metric='euclidean', n_jobs=1, seed=None, verbose=0): """Performs classic, metric, and non-metric MDS Metric MDS is initialized using classic MDS, non-metric MDS is initialized using metric MDS. Parameters ---------- X: ndarray [n_sa...

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def clean_delete(self): """ Deletes this router & associated files (nvram, disks etc.) """ yield from self._hypervisor.send('vm clean_delete "{}"'.format(self._name)) self._hypervisor.devices.remove(self) try: yield from wait_run_in_executor(shutil.rmtree, se...

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def populate_jobset(job, jobset, depth): """ Creates a set of jobs, containing jobs at difference depths of the dependency tree, retaining dependencies as strings, not Jobs. """ jobset.add(job) if len(job.dependencies) == 0: return jobset for j in job.dependencies: jobset = popul...

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def read_pmc(self, pmcid): """Read a given PMC article. Parameters ---------- pmcid : str The PMC ID of the article to read. Note that only articles in the open-access subset of PMC will work. """ msg = KQMLPerformative('REQUEST') msg.set(...

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32.5

12

def check(self, file): """ Checks a given file against all available yara rules :param file: Path to file :type file:str :returns: Python list with matched rules info :rtype: list """ result = [] all_matches = [] for filerules in os.listdir...

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41.8

18.2

def reset(self): """ Releases all entities held by this Unit Of Work (i.e., removes state information from all registered entities and clears the entity map). """ for ents in self.__entity_set_map.values(): for ent in ents: EntityState.release(ent, sel...

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39.111111

14.222222

def Action(act, *args, **kw): """A factory for action objects.""" # Really simple: the _do_create_* routines do the heavy lifting. _do_create_keywords(args, kw) if is_List(act): return _do_create_list_action(act, kw) return _do_create_action(act, kw)

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38.857143

10.714286

def get_data_feed(self, train_mode=True, qname_in='input', qname_out='output', input_mapping=None): """Convenience function to access ``TFNode.DataFeed`` directly from this object instance.""" return TFNode.DataFeed(self.mgr, train_mode, qname_in, qname_out, input_mapping)

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93

34.333333

def make_avsc_object(json_data, names=None): # type: (Union[Dict[Text, Text], List[Any], Text], Optional[Names]) -> Schema """ Build Avro Schema from data parsed out of JSON string. @arg names: A Name object (tracks seen names and default space) """ if names is None: names = Names() ...

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45.851064

17.595745

def agg_autocorrelation(x, param): r""" Calculates the value of an aggregation function :math:`f_{agg}` (e.g. the variance or the mean) over the autocorrelation :math:`R(l)` for different lags. The autocorrelation :math:`R(l)` for lag :math:`l` is defined as .. math:: R(l) = \frac{1}{(n-l)\sig...

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47.162791

35.465116

def boundary_maximum_exponential(graph, xxx_todo_changeme3): r""" Boundary term processing adjacent voxels maximum value using an exponential relationship. An implementation of a boundary term, suitable to be used with the `~medpy.graphcut.generate.graph_from_voxels` function. The same as...

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39.355556

22.088889

def update_grammar_to_be_variable_free(grammar_dictionary: Dict[str, List[str]]): """ SQL is a predominately variable free language in terms of simple usage, in the sense that most queries do not create references to variables which are not already static tables in a dataset. However, it is possible to ...

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53

24.771429

def clean_cornell_movies(filename='cornell_movie_dialogs_corpus.zip', subdir='cornell movie-dialogs corpus'): """ Load a dataframe of ~100k raw (uncollated) movie lines from the cornell movies dialog corpus >>> local_filepath = download_file(BIG_URLS['cornell_movie_dialogs_corpus'][0]) >>> df = clean_c...

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49.107143

16.357143

def iter_files(self): """Iterate over files.""" # file_iter may be a callable or an iterator if callable(self.file_iter): return self.file_iter() return iter(self.file_iter)

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35.333333

7.5

def _get_self_bounds(self): """ Computes the bounds of the object itself (not including it's children) in the form [[lat_min, lon_min], [lat_max, lon_max]]. """ bounds = [[None, None], [None, None]] for point in self.data: bounds = [ [ ...

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31.684211

17.473684

def create_profile(): """If this is the user's first login, the create_or_login function will redirect here so that the user can set up his profile. """ if g.user is not None or 'openid' not in session: return redirect(url_for('index')) if request.method == 'POST': name = request.for...

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44.333333

14.722222

def change_password(self, usrname, oldpwd, newpwd, callback=None): ''' Change password. ''' params = {'usrName': usrname, 'oldPwd' : oldpwd, 'newPwd' : newpwd, } return self.execute_command('changePassword', ...

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35.4

16.8

def get(self, entry): """Gets an entry by key. Will return None if there is no matching entry.""" try: list = self.cache[entry.key] return list[list.index(entry)] except: return None

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30.5

11.375

def calcstats(data, t1, t2, sr): """Calculate the mean and standard deviation of some array between t1 and t2 provided the sample rate sr. """ dataseg = data[sr*t1:sr*t2] meandata = np.mean(dataseg[~np.isnan(dataseg)]) stddata = np.std(dataseg[~np.isnan(dataseg)]) return meandata, std...

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39.625

6.5

def _write_config_file(template_file): """ Write a config file to the source bundle location to identify the entry point. :param template_file: path to the task template subclass (executable) """ config_filename = '.cloud_harness_config.json' config_path = os.path.dirname...

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33.842105

20.368421

def _handle_subscribed(self, *args, chanId=None, channel=None, **kwargs): """ Handles responses to subscribe() commands - registers a channel id with the client and assigns a data handler to it. :param chanId: int, represent channel id as assigned by server :param channel: str, ...

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30.833333

21.404762

def deployed(name, jboss_config, salt_source=None): '''Ensures that the given application is deployed on server. jboss_config: Dict with connection properties (see state description) salt_source: How to find the artifact to be deployed. target_file: Where to look...

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44.055556

31.796296

def _generic_definetext_parser(self, obj, rgb_struct): """Generic parser for the DefineTextN tags.""" obj.CharacterID = unpack_ui16(self._src) obj.TextBounds = self._get_struct_rect() obj.TextMatrix = self._get_struct_matrix() obj.GlyphBits = glyph_bits = unpack_ui8(self._src) ...

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41.489796

13

def validate(defaults, metadata, config): """ Validate configuration. """ for path, _, default, parent, value in zip_dicts(defaults, config): if isinstance(default, Requirement): # validate the current value and assign the output parent[path[-1]] = default.validate(metad...

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36.555556

15.666667

def is_predecessor_of_other(self, predecessor, others): """Returns whether the predecessor is a predecessor or a predecessor of a predecessor...of any of the others. Args: predecessor (str): The txn id of the predecessor. others (list(str)): The txn id of the successor. ...

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31.142857

23.928571

def gen_items_from_sql_csv(s: str) -> Generator[str, None, None]: """ Splits a comma-separated list of quoted SQL values, with ``'`` as the quote character. Allows escaping of the quote character by doubling it. Returns the quotes (and escaped quotes) as part of the result. Allows newlines etc. with...

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37.3

18.4

async def enqueue_job( self, function: str, *args: Any, _job_id: Optional[str] = None, _defer_until: Optional[datetime] = None, _defer_by: Union[None, int, float, timedelta] = None, _expires: Union[None, int, float, timedelta] = None, _job_try: Optional[in...

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38.583333

18.25

def parse(args): """ Define the available arguments """ from tzlocal import get_localzone try: timezone = get_localzone() if isinstance(timezone, pytz.BaseTzInfo): timezone = timezone.zone except Exception: # pragma: no cover timezone = 'UTC' if timezone...

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50.745283

26.613208

def get_significant_digits(numeric_value): """ Returns the precision for a given floatable value. If value is None or not floatable, returns None. Will return positive values if the result is below 1 and will return 0 values if the result is above or equal to 1. :param numeric_value: the value t...

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35.884615

13.423077

def put_file(up_token, key, file_path, params=None, mime_type='application/octet-stream', check_crc=False, progress_handler=None, upload_progress_recorder=None, keep_last_modified=False): """上传文件到七牛 Args: up_token: 上传凭证 key: 上传文件名 file_path...

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45.305556

22.277778

def validate(self): """ Validates the state of this XBlock. Subclasses should override validate_field_data() to validate fields and override this only for validation not related to this block's field values. """ validation = super(StudioEditableXBlockMixin, self).validat...

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39.1

20.1

def addButton( fnc, states=("On", "Off"), c=("w", "w"), bc=("dg", "dr"), pos=(20, 40), size=24, font="arial", bold=False, italic=False, alpha=1, angle=0, ): """Add a button to the renderer window. :param list states: a list of possible states ['On', 'Off'] :p...

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30.657895

19.447368

def _make_all_matchers(cls, parameters): ''' For every parameter, create a matcher if the parameter has an annotation. ''' for name, param in parameters: annotation = param.annotation if annotation is not Parameter.empty: yield name, cls._m...

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39.222222

17.222222

def update_intervals(self, back=None): ''' Return the update intervals for all of the enabled fileserver backends which support variable update intervals. ''' back = self.backends(back) ret = {} for fsb in back: fstr = '{0}.update_intervals'.format(fsb...

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34.5

16.5