kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def get_rec_column_descr(self, colnum, vstorage): """ Get a descriptor entry for the specified column. parameters ---------- colnum: integer The column number, 0 offset vstorage: string See docs in read_columns """ npy_type, isvar,...	[ "def", "get_rec_column_descr", "(", "self", ",", "colnum", ",", "vstorage", ")", ":", "npy_type", ",", "isvar", ",", "istbit", "=", "self", ".", "_get_tbl_numpy_dtype", "(", "colnum", ")", "name", "=", "self", ".", "_info", "[", "'colinfo'", "]", "[", "c...	39.431034	16.810345
def get(self, receiver_id=None, event_id=None): """Handle GET request.""" event = self._get_event(receiver_id, event_id) return make_response(event)	[ "def", "get", "(", "self", ",", "receiver_id", "=", "None", ",", "event_id", "=", "None", ")", ":", "event", "=", "self", ".", "_get_event", "(", "receiver_id", ",", "event_id", ")", "return", "make_response", "(", "event", ")" ]	42.25	6.5
def new_job_file(frontier, job_conf_file): '''Returns new Job.''' logging.info("loading %s", job_conf_file) with open(job_conf_file) as f: job_conf = yaml.safe_load(f) return new_job(frontier, job_conf)	[ "def", "new_job_file", "(", "frontier", ",", "job_conf_file", ")", ":", "logging", ".", "info", "(", "\"loading %s\"", ",", "job_conf_file", ")", "with", "open", "(", "job_conf_file", ")", "as", "f", ":", "job_conf", "=", "yaml", ".", "safe_load", "(", "f"...	37.5	5.5
def __neighbor_indexes_points(self, optic_object): """! @brief Return neighbors of the specified object in case of sequence of points. @param[in] optic_object (optics_descriptor): Object for which neighbors should be returned in line with connectivity radius. @return (list) List ...	[ "def", "__neighbor_indexes_points", "(", "self", ",", "optic_object", ")", ":", "kdnodes", "=", "self", ".", "__kdtree", ".", "find_nearest_dist_nodes", "(", "self", ".", "__sample_pointer", "[", "optic_object", ".", "index_object", "]", ",", "self", ".", "__eps...	55.333333	39.416667
def get_current_async(): """Return a reference to the currently executing Async job object or None if not in an Async job. """ local_context = _local.get_local_context() if local_context._executing_async: return local_context._executing_async[-1] raise errors.NotInContextError('Not in ...	[ "def", "get_current_async", "(", ")", ":", "local_context", "=", "_local", ".", "get_local_context", "(", ")", "if", "local_context", ".", "_executing_async", ":", "return", "local_context", ".", "_executing_async", "[", "-", "1", "]", "raise", "errors", ".", ...	33.4	14.4
def attack_batch(self, imgs, labs): """ Run the attack on a batch of instance and labels. """ def compare(x, y): if not isinstance(x, (float, int, np.int64)): x = np.copy(x) if self.TARGETED: x[y] -= self.CONFIDENCE else: x[y] += self.CONFIDENCE ...	[ "def", "attack_batch", "(", "self", ",", "imgs", ",", "labs", ")", ":", "def", "compare", "(", "x", ",", "y", ")", ":", "if", "not", "isinstance", "(", "x", ",", "(", "float", ",", "int", ",", "np", ".", "int64", ")", ")", ":", "x", "=", "np"...	34.934959	17.552846
def viterbi_decode(tag_sequence: torch.Tensor, transition_matrix: torch.Tensor, tag_observations: Optional[List[int]] = None): """ Perform Viterbi decoding in log space over a sequence given a transition matrix specifying pairwise (transition) potentials between tags an...	[ "def", "viterbi_decode", "(", "tag_sequence", ":", "torch", ".", "Tensor", ",", "transition_matrix", ":", "torch", ".", "Tensor", ",", "tag_observations", ":", "Optional", "[", "List", "[", "int", "]", "]", "=", "None", ")", ":", "sequence_length", ",", "n...	46.464286	22.607143
def image_search(auth=None, *kwargs): ''' Search for images CLI Example: .. code-block:: bash salt '' glanceng.image_search name=image1 salt '' glanceng.image_search ''' cloud = get_operator_cloud(auth) kwargs = _clean_kwargs(kwargs) return cloud.search_images(*k...	[ "def", "image_search", "(", "auth", "=", "None", ",", "", "", "kwargs", ")", ":", "cloud", "=", "get_operator_cloud", "(", "auth", ")", "kwargs", "=", "_clean_kwargs", "(", "", "", "kwargs", ")", "return", "cloud", ".", "search_images", "(", "*", "...	22.357143	19.071429
def open(self): """ Calls SetupDiGetClassDevs to obtain a handle to an opaque device information set that describes the device interfaces supported by all the USB collections currently installed in the system. The application should specify DIGCF.PRESENT and DIGCF.INTERFACED...	[ "def", "open", "(", "self", ")", ":", "self", ".", "h_info", "=", "SetupDiGetClassDevs", "(", "byref", "(", "self", ".", "guid", ")", ",", "None", ",", "None", ",", "(", "DIGCF", ".", "PRESENT", "\|", "DIGCF", ".", "DEVICEINTERFACE", ")", ")", "return...	46	23.5
def load_off(file_obj, **kwargs): """ Load an OFF file into the kwargs for a Trimesh constructor Parameters ---------- file_obj : file object Contains an OFF file Returns ---------- loaded : dict kwargs for Trimesh constructor """ header_string =...	[ "def", "load_off", "(", "file_obj", ",", "", "", "kwargs", ")", ":", "header_string", "=", "file_obj", ".", "readline", "(", ")", "if", "hasattr", "(", "header_string", ",", "'decode'", ")", ":", "header_string", "=", "header_string", ".", "decode", "(",...	29.422222	16.488889
def set_breakpoints(self, breakpoints): """Set breakpoints""" self.clear_breakpoints() for line_number, condition in breakpoints: self.toogle_breakpoint(line_number, condition) self.breakpoints = self.get_breakpoints()	[ "def", "set_breakpoints", "(", "self", ",", "breakpoints", ")", ":", "self", ".", "clear_breakpoints", "(", ")", "for", "line_number", ",", "condition", "in", "breakpoints", ":", "self", ".", "toogle_breakpoint", "(", "line_number", ",", "condition", ")", "sel...	42.833333	7.666667
def generate_code_verifier(n_bytes=64): """ source: https://github.com/openstack/deb-python-oauth2client Generates a 'code_verifier' as described in section 4.1 of RFC 7636. This is a 'high-entropy cryptographic random string' that will be impractical for an attacker to guess. Args: n_by...	[ "def", "generate_code_verifier", "(", "n_bytes", "=", "64", ")", ":", "verifier", "=", "base64", ".", "urlsafe_b64encode", "(", "os", ".", "urandom", "(", "n_bytes", ")", ")", ".", "rstrip", "(", "b'='", ")", ".", "decode", "(", "'utf-8'", ")", "# https:...	40.458333	19.208333
def unwrap_single(self): """ Unwrap the single Result item. Call this from single-operation methods to return the actual result :return: The actual result """ try: return next(self.itervalues()) except AttributeError: return next(iter(self....	[ "def", "unwrap_single", "(", "self", ")", ":", "try", ":", "return", "next", "(", "self", ".", "itervalues", "(", ")", ")", "except", "AttributeError", ":", "return", "next", "(", "iter", "(", "self", ".", "values", "(", ")", ")", ")" ]	32.1	9.9
def command(self, rs_id, command, args): """Call a ReplicaSet method.""" rs = self._storage[rs_id] try: return getattr(rs, command)(args) except AttributeError: raise ValueError("Cannot issue the command %r to ReplicaSet %s" % (comma...	[ "def", "command", "(", "self", ",", "rs_id", ",", "command", ",", "", "args", ")", ":", "rs", "=", "self", ".", "_storage", "[", "rs_id", "]", "try", ":", "return", "getattr", "(", "rs", ",", "command", ")", "(", "", "args", ")", "except", "Att...	40.5	11.875
def to_list_of(self, state): # type: (S) -> List[B] '''Returns a list of all the foci within `state`. Requires kind Fold. This method will raise TypeError if the optic has no way to get any foci. ''' if not self._is_kind(Fold): raise TypeError('Must be an ins...	[ "def", "to_list_of", "(", "self", ",", "state", ")", ":", "# type: (S) -> List[B]", "if", "not", "self", ".", "_is_kind", "(", "Fold", ")", ":", "raise", "TypeError", "(", "'Must be an instance of Fold to .to_list_of()'", ")", "pure", "=", "lambda", "a", ":", ...	35.846154	18.461538
def p_declarations(self, p): """declarations : declarations declaration \| declaration""" n = len(p) if n == 3: p[0] = p[1] + [p[2]] elif n == 2: p[0] = [p[1]]	[ "def", "p_declarations", "(", "self", ",", "p", ")", ":", "n", "=", "len", "(", "p", ")", "if", "n", "==", "3", ":", "p", "[", "0", "]", "=", "p", "[", "1", "]", "+", "[", "p", "[", "2", "]", "]", "elif", "n", "==", "2", ":", "p", "["...	28.875	12.375
def parse_sidebar(self, media_page): """Parses the DOM and returns media attributes in the sidebar. :type media_page: :class:`bs4.BeautifulSoup` :param media_page: MAL media page's DOM :rtype: dict :return: media attributes. :raises: InvalidMediaError, MalformedMediaPageError """ med...	[ "def", "parse_sidebar", "(", "self", ",", "media_page", ")", ":", "media_info", "=", "{", "}", "# if MAL says the series doesn't exist, raise an InvalidMediaError.", "error_tag", "=", "media_page", ".", "find", "(", "u'div'", ",", "{", "'class'", ":", "'badresult'", ...	37.119205	25.430464
def get_queryset_filters(self, query): """ Return the filtered queryset """ conditions = Q() for field_name in self.fields: conditions \|= Q(**{ self._construct_qs_filter(field_name): query }) return conditions	[ "def", "get_queryset_filters", "(", "self", ",", "query", ")", ":", "conditions", "=", "Q", "(", ")", "for", "field_name", "in", "self", ".", "fields", ":", "conditions", "\|=", "Q", "(", "", "", "{", "self", ".", "_construct_qs_filter", "(", "field_nam...	28.8	9.4
def _os_walk(directory, recurse=True, kwargs): """ Work like os.walk but if recurse is False just list current directory """ if recurse: for root, dirs, files in os.walk(directory, kwargs): yield root, dirs, files else: files = [] for filename in os.listdir(di...	[ "def", "_os_walk", "(", "directory", ",", "recurse", "=", "True", ",", "", "", "kwargs", ")", ":", "if", "recurse", ":", "for", "root", ",", "dirs", ",", "files", "in", "os", ".", "walk", "(", "directory", ",", "", "", "kwargs", ")", ":", "yi...	35.153846	14.230769
def delete(self): """ Destructor. """ if self.glucose: pysolvers.glucose3_del(self.glucose) self.glucose = None if self.prfile: self.prfile.close()	[ "def", "delete", "(", "self", ")", ":", "if", "self", ".", "glucose", ":", "pysolvers", ".", "glucose3_del", "(", "self", ".", "glucose", ")", "self", ".", "glucose", "=", "None", "if", "self", ".", "prfile", ":", "self", ".", "prfile", ".", "close",...	20.636364	15.545455
def _inferSchema(self, rdd, samplingRatio=None, names=None): """ Infer schema from an RDD of Row or tuple. :param rdd: an RDD of Row or tuple :param samplingRatio: sampling ratio, or no sampling (default) :return: :class:`pyspark.sql.types.StructType` """ first =...	[ "def", "_inferSchema", "(", "self", ",", "rdd", ",", "samplingRatio", "=", "None", ",", "names", "=", "None", ")", ":", "first", "=", "rdd", ".", "first", "(", ")", "if", "not", "first", ":", "raise", "ValueError", "(", "\"The first row in RDD is empty, \"...	43.741935	19.225806
def pushtx(tx_hex, coin_symbol='btc', api_key=None): ''' Takes a signed transaction hex binary (and coin_symbol) and broadcasts it to the bitcoin network. ''' assert is_valid_coin_symbol(coin_symbol) assert api_key, 'api_key required' url = _get_pushtx_url(coin_symbol=coin_symbol) logger....	[ "def", "pushtx", "(", "tx_hex", ",", "coin_symbol", "=", "'btc'", ",", "api_key", "=", "None", ")", ":", "assert", "is_valid_coin_symbol", "(", "coin_symbol", ")", "assert", "api_key", ",", "'api_key required'", "url", "=", "_get_pushtx_url", "(", "coin_symbol",...	27.555556	28
def logger_initial_config(service_name=None, log_level=None, logger_format=None, logger_date_format=None): '''Set initial logging configurations. :param service_name: Name of the service :type logger: String :param log_level...	[ "def", "logger_initial_config", "(", "service_name", "=", "None", ",", "log_level", "=", "None", ",", "logger_format", "=", "None", ",", "logger_date_format", "=", "None", ")", ":", "if", "not", "log_level", ":", "log_level", "=", "os", ".", "getenv", "(", ...	32.852941	20.029412
def nodes(self, type=None, failed=False, participant_id=None): """Get nodes in the network. type specifies the type of Node. Failed can be "all", False (default) or True. If a participant_id is passed only nodes with that participant_id will be returned. """ if type is N...	[ "def", "nodes", "(", "self", ",", "type", "=", "None", ",", "failed", "=", "False", ",", "participant_id", "=", "None", ")", ":", "if", "type", "is", "None", ":", "type", "=", "Node", "if", "not", "issubclass", "(", "type", ",", "Node", ")", ":", ...	38.633333	21.2
def get_contour_pd_plot(self): """ Plot a contour phase diagram plot, where phase triangles are colored according to degree of instability by interpolation. Currently only works for 3-component phase diagrams. Returns: A matplotlib plot object. """ fr...	[ "def", "get_contour_pd_plot", "(", "self", ")", ":", "from", "scipy", "import", "interpolate", "from", "matplotlib", "import", "cm", "pd", "=", "self", ".", "_pd", "entries", "=", "pd", ".", "qhull_entries", "data", "=", "np", ".", "array", "(", "pd", "....	31.6	17.142857
def _stream(self): """execute subprocess with timeout Usage:: >>> with cmd_proc.run_with_timeout() as cmd_proc: ... stdout, stderr = cmd_proc.communicate() ... >>> assert cmd_proc.proc.return_code == 0, "proc exec failed" """ timer =...	[ "def", "_stream", "(", "self", ")", ":", "timer", "=", "None", "try", ":", "proc", "=", "subprocess", ".", "Popen", "(", "self", ".", "cmd", ",", "cwd", "=", "self", ".", "cwd", ",", "env", "=", "self", ".", "env", ",", "stdout", "=", "subprocess...	28.333333	18.222222
def logged(level=logging.DEBUG): """ Useful logging decorator. If a method is logged, the beginning and end of the method call will be logged at a pre-specified level. Args: level: Level to log method at. Defaults to DEBUG. """ def wrap(f): _logger = logging.getLogger("{}.{}".fo...	[ "def", "logged", "(", "level", "=", "logging", ".", "DEBUG", ")", ":", "def", "wrap", "(", "f", ")", ":", "_logger", "=", "logging", ".", "getLogger", "(", "\"{}.{}\"", ".", "format", "(", "f", ".", "__module__", ",", "f", ".", "__name__", ")", ")"...	36.761905	23.238095
def request(method, url, **kwargs): """same as requests/requests/api.py request(...)""" time_before_request = time() # session start session = SessionSinglePool() # proxies kwargs['proxies'] = settings['outgoing'].get('proxies') or None # timeout if 'timeout' in kwargs: timeou...	[ "def", "request", "(", "method", ",", "url", ",", "", "", "kwargs", ")", ":", "time_before_request", "=", "time", "(", ")", "# session start", "session", "=", "SessionSinglePool", "(", ")", "# proxies", "kwargs", "[", "'proxies'", "]", "=", "settings", "...	29.74359	21.410256
def custom_handler(self, glade, function_name, widget_name, str1, str2, int1, int2): """ Generic handler for creating custom widgets, internally used to enable custom widgets (custom widgets of glade). The custom widgets have a creation function specified in design time. Those c...	[ "def", "custom_handler", "(", "self", ",", "glade", ",", "function_name", ",", "widget_name", ",", "str1", ",", "str2", ",", "int1", ",", "int2", ")", ":", "try", ":", "handler", "=", "getattr", "(", "self", ",", "function_name", ")", "return", "handler"...	43.75	24.15
def _create_db(self): """Creates a new databae or opens a connection to an existing one. .. note:: You can't share sqlite3 connections between threads (by default) hence we setup the db here. It has the upside of running async. """ log.debug("Creating sqlite data...	[ "def", "_create_db", "(", "self", ")", ":", "log", ".", "debug", "(", "\"Creating sqlite database\"", ")", "self", ".", "_conn", "=", "sqlite3", ".", "connect", "(", "self", ".", "_db_filename", ")", "# create table structure", "self", ".", "_conn", ".", "cu...	32	19.692308
def _find_vm(name, data, quiet=False): ''' Scan the query data for the named VM ''' for hv_ in data: # Check if data is a dict, and not '"virt.full_info" is not available.' if not isinstance(data[hv_], dict): continue if name in data[hv_].get('vm_info', {}): ...	[ "def", "_find_vm", "(", "name", ",", "data", ",", "quiet", "=", "False", ")", ":", "for", "hv_", "in", "data", ":", "# Check if data is a dict, and not '\"virt.full_info\" is not available.'", "if", "not", "isinstance", "(", "data", "[", "hv_", "]", ",", "dict",...	36.5	20.5
def get_client_settings_config_file(*kwargs): # pylint: disable=inconsistent-return-statements """Retrieve client settings from the possible config file locations. :param \\\\*kwargs: Arguments that are passed into the client instance """ config_files = ['/etc/softlayer.conf', '~/.softlayer'] ...	[ "def", "get_client_settings_config_file", "(", "", "", "kwargs", ")", ":", "# pylint: disable=inconsistent-return-statements", "config_files", "=", "[", "'/etc/softlayer.conf'", ",", "'~/.softlayer'", "]", "if", "kwargs", ".", "get", "(", "'config_file'", ")", ":", ...	39.576923	20.615385
def _wrap_paginated_response(cls, request, response, controls, data, head=None): """Builds the metadata for a pagingated response and wraps everying in a JSON encoded web.Response """ paging_response = response['paging'] if head is None: ...	[ "def", "_wrap_paginated_response", "(", "cls", ",", "request", ",", "response", ",", "controls", ",", "data", ",", "head", "=", "None", ")", ":", "paging_response", "=", "response", "[", "'paging'", "]", "if", "head", "is", "None", ":", "head", "=", "res...	32.446809	14.510638
async def start(self, **kwargs): """Start the pairing server and publish service.""" zeroconf = kwargs['zeroconf'] self._name = kwargs['name'] self._pairing_guid = kwargs.get('pairing_guid', None) or \ self._generate_random_guid() self._web_server = web.Server(self.h...	[ "async", "def", "start", "(", "self", ",", "", "", "kwargs", ")", ":", "zeroconf", "=", "kwargs", "[", "'zeroconf'", "]", "self", ".", "_name", "=", "kwargs", "[", "'name'", "]", "self", ".", "_pairing_guid", "=", "kwargs", ".", "get", "(", "'pairi...	44.4375	20.25
def get_yaml_schema(self): """GetYamlSchema. [Preview API] :rtype: object """ response = self._send(http_method='GET', location_id='1f9990b9-1dba-441f-9c2e-6485888c42b6', version='5.1-preview.1') return self._des...	[ "def", "get_yaml_schema", "(", "self", ")", ":", "response", "=", "self", ".", "_send", "(", "http_method", "=", "'GET'", ",", "location_id", "=", "'1f9990b9-1dba-441f-9c2e-6485888c42b6'", ",", "version", "=", "'5.1-preview.1'", ")", "return", "self", ".", "_des...	37.777778	14
def _remlogic_time(time_cell, date): """Reads RemLogic time string to datetime Parameters ---------- time_cell : str entire time cell from text file date : datetime start date from text file Returns ------- datetime date and time """ stage_st...	[ "def", "_remlogic_time", "(", "time_cell", ",", "date", ")", ":", "stage_start_time", "=", "datetime", ".", "strptime", "(", "time_cell", "[", "-", "8", ":", "]", ",", "'%I:%M:%S'", ")", "start", "=", "datetime", ".", "combine", "(", "date", ".", "date",...	25.192308	18.576923
def CopyToDateTimeString(self): """Copies the POSIX timestamp to a date and time string. Returns: str: date and time value formatted as: "YYYY-MM-DD hh:mm:ss.######" or None if the timestamp is missing. """ if (self._timestamp is None or self._timestamp < self._INT64_MIN or self...	[ "def", "CopyToDateTimeString", "(", "self", ")", ":", "if", "(", "self", ".", "_timestamp", "is", "None", "or", "self", ".", "_timestamp", "<", "self", ".", "_INT64_MIN", "or", "self", ".", "_timestamp", ">", "self", ".", "_INT64_MAX", ")", ":", "return"...	34.583333	19
def get_command(self, ctx, cmd_name): """Get command for click.""" path = "%s.%s" % (__name__, cmd_name) path = path.replace("-", "_") module = importlib.import_module(path) return getattr(module, 'cli')	[ "def", "get_command", "(", "self", ",", "ctx", ",", "cmd_name", ")", ":", "path", "=", "\"%s.%s\"", "%", "(", "__name__", ",", "cmd_name", ")", "path", "=", "path", ".", "replace", "(", "\"-\"", ",", "\"_\"", ")", "module", "=", "importlib", ".", "im...	39.666667	3.333333
def cons(collection, value): """Extends a collection with a value.""" if isinstance(value, collections.Mapping): if collection is None: collection = {} collection.update(**value) elif isinstance(value, six.string_types): if collection is None: collection = []...	[ "def", "cons", "(", "collection", ",", "value", ")", ":", "if", "isinstance", "(", "value", ",", "collections", ".", "Mapping", ")", ":", "if", "collection", "is", "None", ":", "collection", "=", "{", "}", "collection", ".", "update", "(", "", "", ...	26.086957	15.826087
def stop_stack(awsclient, stack_name, use_suspend=False): """Stop an existing stack on AWS cloud. :param awsclient: :param stack_name: :param use_suspend: use suspend and resume on the autoscaling group :return: exit_code """ exit_code = 0 # check for DisableStop #disable_stop = co...	[ "def", "stop_stack", "(", "awsclient", ",", "stack_name", ",", "use_suspend", "=", "False", ")", ":", "exit_code", "=", "0", "# check for DisableStop", "#disable_stop = conf.get('deployment', {}).get('DisableStop', False)", "#if disable_stop:", "# log.warn('\\'DisableStop\\' i...	40.948276	22
def checkResponse(request): ''' Returns if a request has an okay error code, otherwise raises InvalidRequest. ''' # Check the status code of the returned request if str(request.status_code)[0] not in ['2', '3']: w = str(request.text).split('\\r')[0][2:] r...	[ "def", "checkResponse", "(", "request", ")", ":", "# Check the status code of the returned request", "if", "str", "(", "request", ".", "status_code", ")", "[", "0", "]", "not", "in", "[", "'2'", ",", "'3'", "]", ":", "w", "=", "str", "(", "request", ".", ...	34.8	23.2
def call(__self, __obj, args, *kwargs): """Call the callable with the arguments and keyword arguments provided but inject the active context or environment as first argument if the callable is a :func:`contextfunction` or :func:`environmentfunction`. """ if __debug__: ...	[ "def", "call", "(", "__self", ",", "__obj", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "if", "__debug__", ":", "__traceback_hide__", "=", "True", "if", "isinstance", "(", "__obj", ",", "_context_function_types", ")", ":", "if", "getattr", "(", ...	46.625	10.375
def set_all_requested_intervals(self, requested_intervals): """ Sets the requested intervals for all workflow :param requested_intervals: The requested intervals :return: None :type requested_intervals: TimeIntervals """ for workflow_id in self.workflows: ...	[ "def", "set_all_requested_intervals", "(", "self", ",", "requested_intervals", ")", ":", "for", "workflow_id", "in", "self", ".", "workflows", ":", "if", "self", ".", "workflows", "[", "workflow_id", "]", ".", "online", ":", "self", ".", "workflows", "[", "w...	43.9	13.5
def _find_own_cgroups(): """ For all subsystems, return the information in which (sub-)cgroup this process is in. (Each process is in exactly cgroup in each hierarchy.) @return a generator of tuples (subsystem, cgroup) """ try: with open('/proc/self/cgroup', 'rt') as ownCgroupsFile: ...	[ "def", "_find_own_cgroups", "(", ")", ":", "try", ":", "with", "open", "(", "'/proc/self/cgroup'", ",", "'rt'", ")", "as", "ownCgroupsFile", ":", "for", "cgroup", "in", "_parse_proc_pid_cgroup", "(", "ownCgroupsFile", ")", ":", "yield", "cgroup", "except", "IO...	39.833333	18.833333
def _scalar2array(d): """Convert a dictionary with scalar elements and string indices '_1234' to a dictionary of arrays. Unspecified entries are np.nan.""" da = {} for k, v in d.items(): if '_' not in k: da[k] = v else: name = ''.join(k.split('_')[:-1]) ...	[ "def", "_scalar2array", "(", "d", ")", ":", "da", "=", "{", "}", "for", "k", ",", "v", "in", "d", ".", "items", "(", ")", ":", "if", "'_'", "not", "in", "k", ":", "da", "[", "k", "]", "=", "v", "else", ":", "name", "=", "''", ".", "join",...	35.588235	13.823529
def to_list(self): """ To a list of dicts (each dict is an instances) """ ret = [] for instance in self.instances: ret.append(instance.to_dict()) return ret	[ "def", "to_list", "(", "self", ")", ":", "ret", "=", "[", "]", "for", "instance", "in", "self", ".", "instances", ":", "ret", ".", "append", "(", "instance", ".", "to_dict", "(", ")", ")", "return", "ret" ]	26.125	10.625
async def extended_analog(self, pin, data): """ This method will send an extended-data analog write command to the selected pin. :param pin: 0 - 127 :param data: 0 - 0xfffff :returns: No return value """ analog_data = [pin, data & 0x7f, (data >> 7) & 0x...	[ "async", "def", "extended_analog", "(", "self", ",", "pin", ",", "data", ")", ":", "analog_data", "=", "[", "pin", ",", "data", "&", "0x7f", ",", "(", "data", ">>", "7", ")", "&", "0x7f", ",", "(", "data", ">>", "14", ")", "&", "0x7f", "]", "aw...	31.538462	21.692308
def fit(self, X, y, **kwargs): """ Fits the estimator to calculate feature correlation to dependent variable. Parameters ---------- X : ndarray or DataFrame of shape n x m A matrix of n instances with m features y : ndarray or Series of length n ...	[ "def", "fit", "(", "self", ",", "X", ",", "y", ",", "", "", "kwargs", ")", ":", "self", ".", "_create_labels_for_features", "(", "X", ")", "self", ".", "_select_features_to_plot", "(", "X", ")", "# Calculate Features correlation with target variable", "if", ...	30.916667	20.5
def _load(self, exit_on_failure): """One you have added all your configuration data (Section, Element, ...) you need to load data from the config file.""" # pylint: disable-msg=W0621 log = logging.getLogger('argtoolbox') discoveredFileList = [] if self.config_file: ...	[ "def", "_load", "(", "self", ",", "exit_on_failure", ")", ":", "# pylint: disable-msg=W0621", "log", "=", "logging", ".", "getLogger", "(", "'argtoolbox'", ")", "discoveredFileList", "=", "[", "]", "if", "self", ".", "config_file", ":", "if", "isinstance", "("...	42.068182	16.772727
def get_lowest_probable_prepared_certificate_in_view( self, view_no) -> Optional[int]: """ Return lowest pp_seq_no of the view for which can be prepared but choose from unprocessed PRE-PREPAREs and PREPAREs. """ # TODO: Naive implementation, dont need to iterate over ...	[ "def", "get_lowest_probable_prepared_certificate_in_view", "(", "self", ",", "view_no", ")", "->", "Optional", "[", "int", "]", ":", "# TODO: Naive implementation, dont need to iterate over the complete", "# data structures, fix this later", "seq_no_pp", "=", "SortedList", "(", ...	36.269231	18.346154
def delete(self, key, sort_key): primary_key = key key = self.prefixed('{}:{}'.format(key, sort_key)) """ Delete an element in dictionary """ self.logger.debug('Storage - delete {}'.format(key)) if sort_key is not None: self.cache[self.prefixed(primary_key)].remove(so...	[ "def", "delete", "(", "self", ",", "key", ",", "sort_key", ")", ":", "primary_key", "=", "key", "key", "=", "self", ".", "prefixed", "(", "'{}:{}'", ".", "format", "(", "key", ",", "sort_key", ")", ")", "self", ".", "logger", ".", "debug", "(", "'S...	42.214286	13.857143
def _get_src_path_line_nodes_jacoco(self, xml_document, src_path): """ Return a list of nodes containing line information for `src_path` in `xml_document`. If file is not present in `xml_document`, return None """ files = [] packages = [pkg for pkg in xml_docume...	[ "def", "_get_src_path_line_nodes_jacoco", "(", "self", ",", "xml_document", ",", "src_path", ")", ":", "files", "=", "[", "]", "packages", "=", "[", "pkg", "for", "pkg", "in", "xml_document", ".", "findall", "(", "\".//package\"", ")", "]", "for", "pkg", "...	35.782609	20.478261
def most_recent_year(): """ This year, if it's December. The most recent year, otherwise. Note: Advent of Code started in 2015 """ aoc_now = datetime.datetime.now(tz=AOC_TZ) year = aoc_now.year if aoc_now.month < 12: year -= 1 if year < 2015: raise AocdError("Time tra...	[ "def", "most_recent_year", "(", ")", ":", "aoc_now", "=", "datetime", ".", "datetime", ".", "now", "(", "tz", "=", "AOC_TZ", ")", "year", "=", "aoc_now", ".", "year", "if", "aoc_now", ".", "month", "<", "12", ":", "year", "-=", "1", "if", "year", "...	26.692308	11.615385
def serialize_footer(signer): """Uses the signer object which has been used to sign the message to generate the signature, then serializes that signature. :param signer: Cryptographic signer object :type signer: aws_encryption_sdk.internal.crypto.Signer :returns: Serialized footer :rtype: bytes...	[ "def", "serialize_footer", "(", "signer", ")", ":", "footer", "=", "b\"\"", "if", "signer", "is", "not", "None", ":", "signature", "=", "signer", ".", "finalize", "(", ")", "footer", "=", "struct", ".", "pack", "(", "\">H{sig_len}s\"", ".", "format", "("...	37	17.428571
def _get_privacy(self, table_name): """gets current privacy of a table""" ds_manager = DatasetManager(self.auth_client) try: dataset = ds_manager.get(table_name) return dataset.privacy.lower() except NotFoundException: return None	[ "def", "_get_privacy", "(", "self", ",", "table_name", ")", ":", "ds_manager", "=", "DatasetManager", "(", "self", ".", "auth_client", ")", "try", ":", "dataset", "=", "ds_manager", ".", "get", "(", "table_name", ")", "return", "dataset", ".", "privacy", "...	36.375	10
def git(ctx, url, private, sync): # pylint:disable=assign-to-new-keyword """Set/Sync git repo on this project. Uses [Caching](/references/polyaxon-cli/#caching) Example: \b ```bash $ polyaxon project git --url=https://github.com/polyaxon/polyaxon-quick-start ``` \b ```bash $...	[ "def", "git", "(", "ctx", ",", "url", ",", "private", ",", "sync", ")", ":", "# pylint:disable=assign-to-new-keyword", "user", ",", "project_name", "=", "get_project_or_local", "(", "ctx", ".", "obj", ".", "get", "(", "'project'", ")", ")", "def", "git_set_u...	35.470588	31.196078
def token_list_width(tokenlist): """ Return the character width of this token list. (Take double width characters into account.) :param tokenlist: List of (token, text) or (token, text, mouse_handler) tuples. """ ZeroWidthEscape = Token.ZeroWidthEscape return sum(get_c...	[ "def", "token_list_width", "(", "tokenlist", ")", ":", "ZeroWidthEscape", "=", "Token", ".", "ZeroWidthEscape", "return", "sum", "(", "get_cwidth", "(", "c", ")", "for", "item", "in", "tokenlist", "for", "c", "in", "item", "[", "1", "]", "if", "item", "[...	38.9	17.3
def toXMLname(string): """Convert string to a XML name.""" if string.find(':') != -1 : (prefix, localname) = string.split(':',1) else: prefix = None localname = string T = unicode(localname) N = len(localname) X = []; for i in range(N) : if i< N-1 and T[...	[ "def", "toXMLname", "(", "string", ")", ":", "if", "string", ".", "find", "(", "':'", ")", "!=", "-", "1", ":", "(", "prefix", ",", "localname", ")", "=", "string", ".", "split", "(", "':'", ",", "1", ")", "else", ":", "prefix", "=", "None", "l...	29.642857	16.892857
def open(self, inp, opts={}): """Use this to set where to read from. Set opts['try_lineedit'] if you want this input to interact with GNU-like readline library. By default, we will assume to try importing and using readline. If readline is not importable, line editing is not ava...	[ "def", "open", "(", "self", ",", "inp", ",", "opts", "=", "{", "}", ")", ":", "get_option", "=", "lambda", "key", ":", "Mmisc", ".", "option_set", "(", "opts", ",", "key", ",", "self", ".", "DEFAULT_OPEN_READ_OPTS", ")", "if", "(", "isinstance", "(",...	43.911765	19.117647
def main(self) -> None: """ Main entry point. Runs :func:`service`. """ # Actual main service code. try: self.service() except Exception as e: self.error("Unexpected exception: {e}\n{t}".format( e=e, t=traceback.format_exc()))	[ "def", "main", "(", "self", ")", "->", "None", ":", "# Actual main service code.", "try", ":", "self", ".", "service", "(", ")", "except", "Exception", "as", "e", ":", "self", ".", "error", "(", "\"Unexpected exception: {e}\\n{t}\"", ".", "format", "(", "e",...	30.5	11.1
def put_value(self, value, timeout=None): """Put a value to the Attribute and wait for completion""" self._context.put(self._data.path + ["value"], value, timeout=timeout)	[ "def", "put_value", "(", "self", ",", "value", ",", "timeout", "=", "None", ")", ":", "self", ".", "_context", ".", "put", "(", "self", ".", "_data", ".", "path", "+", "[", "\"value\"", "]", ",", "value", ",", "timeout", "=", "timeout", ")" ]	61.666667	13
def iter_annotation_values(graph, annotation: str) -> Iterable[str]: """Iterate over all of the values for an annotation used in the graph. :param pybel.BELGraph graph: A BEL graph :param str annotation: The annotation to grab """ return ( value for _, _, data in graph.edges(data=Tr...	[ "def", "iter_annotation_values", "(", "graph", ",", "annotation", ":", "str", ")", "->", "Iterable", "[", "str", "]", ":", "return", "(", "value", "for", "_", ",", "_", ",", "data", "in", "graph", ".", "edges", "(", "data", "=", "True", ")", "if", ...	34.833333	16.416667
def experiments_fmri_create(self, experiment_id, filename): """Create functional data object from given file and associate the object with the specified experiment. Parameters ---------- experiment_id : string Unique experiment identifier filename : File-type...	[ "def", "experiments_fmri_create", "(", "self", ",", "experiment_id", ",", "filename", ")", ":", "# Get the experiment to ensure that it exist before we even create the", "# functional data object", "experiment", "=", "self", ".", "experiments_get", "(", "experiment_id", ")", ...	40.555556	18.305556
def target_to_ipv4_long(target): """ Attempt to return a IPv4 long-range list from a target string. """ splitted = target.split('-') if len(splitted) != 2: return None try: start_packed = inet_pton(socket.AF_INET, splitted[0]) end_packed = inet_pton(socket.AF_INET, splitted[1]) ...	[ "def", "target_to_ipv4_long", "(", "target", ")", ":", "splitted", "=", "target", ".", "split", "(", "'-'", ")", "if", "len", "(", "splitted", ")", "!=", "2", ":", "return", "None", "try", ":", "start_packed", "=", "inet_pton", "(", "socket", ".", "AF_...	32.928571	17.357143
def meta_features_path(self, path): """Returns path for meta-features Args: path (str): Absolute/local path of xcessiv folder """ return os.path.join( path, app.config['XCESSIV_META_FEATURES_FOLDER'], str(self.id) )...	[ "def", "meta_features_path", "(", "self", ",", "path", ")", ":", "return", "os", ".", "path", ".", "join", "(", "path", ",", "app", ".", "config", "[", "'XCESSIV_META_FEATURES_FOLDER'", "]", ",", "str", "(", "self", ".", "id", ")", ")", "+", "'.npy'" ]	29	15.727273
def preprocess(options): assert options.bfile!=None, 'Please specify a bfile.' """ computing the covariance matrix """ if options.compute_cov: assert options.bfile!=None, 'Please specify a bfile.' assert options.cfile is not None, 'Specify covariance matrix basename' print('Computing ...	[ "def", "preprocess", "(", "options", ")", ":", "assert", "options", ".", "bfile", "!=", "None", ",", "'Please specify a bfile.'", "if", "options", ".", "compute_cov", ":", "assert", "options", ".", "bfile", "!=", "None", ",", "'Please specify a bfile.'", "assert...	41.397436	18.512821
def _unpack_token_compact(token): """ Unpack a compact-form serialized JWT. Returns (header, payload, signature, signing_input) on success Raises DecodeError on bad input """ if isinstance(token, (str, unicode)): token = token.encode('utf-8') try: signing_input, crypto_segme...	[ "def", "_unpack_token_compact", "(", "token", ")", ":", "if", "isinstance", "(", "token", ",", "(", "str", ",", "unicode", ")", ")", ":", "token", "=", "token", ".", "encode", "(", "'utf-8'", ")", "try", ":", "signing_input", ",", "crypto_segment", "=", ...	31.818182	19.454545
def voice(self): """tuple. contain text and lang code """ dbid = self.lldb.dbid text, lang = self._voiceoverdb.get_text_lang(dbid) return text, lang	[ "def", "voice", "(", "self", ")", ":", "dbid", "=", "self", ".", "lldb", ".", "dbid", "text", ",", "lang", "=", "self", ".", "_voiceoverdb", ".", "get_text_lang", "(", "dbid", ")", "return", "text", ",", "lang" ]	30.5	11.333333
def clean(self): """ Pass the provided username and password to the active authentication backends and verify the user account is not disabled. If authentication succeeds, the ``User`` object is assigned to the form so it can be accessed in the view. """ username ...	[ "def", "clean", "(", "self", ")", ":", "username", "=", "self", ".", "cleaned_data", ".", "get", "(", "'username'", ")", "password", "=", "self", ".", "cleaned_data", ".", "get", "(", "'password'", ")", "if", "username", "and", "password", ":", "try", ...	44.793103	22.241379
def _set_route_source(self, v, load=False): """ Setter method for route_source, mapped from YANG variable /rbridge_id/route_map/content/match/ipv6/route_source (container) If this variable is read-only (config: false) in the source YANG file, then _set_route_source is considered as a private method....	[ "def", "_set_route_source", "(", "self", ",", "v", ",", "load", "=", "False", ")", ":", "if", "hasattr", "(", "v", ",", "\"_utype\"", ")", ":", "v", "=", "v", ".", "_utype", "(", "v", ")", "try", ":", "t", "=", "YANGDynClass", "(", "v", ",", "b...	71.125	34.416667
def main(): """ Example application that opens a serial device and prints messages to the terminal. """ try: # Retrieve the specified serial device. device = AlarmDecoder(SerialDevice(interface=SERIAL_DEVICE)) # Set up an event handler and open the device device.on_messa...	[ "def", "main", "(", ")", ":", "try", ":", "# Retrieve the specified serial device.", "device", "=", "AlarmDecoder", "(", "SerialDevice", "(", "interface", "=", "SERIAL_DEVICE", ")", ")", "# Set up an event handler and open the device", "device", ".", "on_message", "+=",...	31.894737	19.894737
def create_tag(self, tag_name): """ Create a new tag based on the working tree's revision. :param tag_name: The name of the tag to create (a string). """ # Make sure the local repository exists and supports a working tree. self.create() self.ensure_working_tree()...	[ "def", "create_tag", "(", "self", ",", "tag_name", ")", ":", "# Make sure the local repository exists and supports a working tree.", "self", ".", "create", "(", ")", "self", ".", "ensure_working_tree", "(", ")", "# Create the new tag in the local repository.", "logger", "."...	43.083333	20.25
def do_status(self, args): '''print the number of work units in an existing work spec''' work_spec_name = self._get_work_spec_name(args) status = self.task_master.status(work_spec_name) self.stdout.write(json.dumps(status, indent=4, sort_keys=True) + '\n')	[ "def", "do_status", "(", "self", ",", "args", ")", ":", "work_spec_name", "=", "self", ".", "_get_work_spec_name", "(", "args", ")", "status", "=", "self", ".", "task_master", ".", "status", "(", "work_spec_name", ")", "self", ".", "stdout", ".", "write", ...	51.5	19.166667
def create_database(self): """ Create postgres database. """ self.print_message("Creating database '%s'" % self.databases['destination']['name']) self.export_pgpassword('destination') args = [ "createdb", self.databases['destination']['name'], ] ar...	[ "def", "create_database", "(", "self", ")", ":", "self", ".", "print_message", "(", "\"Creating database '%s'\"", "%", "self", ".", "databases", "[", "'destination'", "]", "[", "'name'", "]", ")", "self", ".", "export_pgpassword", "(", "'destination'", ")", "a...	41.461538	16
def load_foundation_sample_data(fd): """ Sample data for the Foundation object :param fd: Foundation Object :return: """ # foundation fd.width = 16.0 # m fd.length = 18.0 # m fd.depth = 0.0 # m fd.mass = 0.0	[ "def", "load_foundation_sample_data", "(", "fd", ")", ":", "# foundation", "fd", ".", "width", "=", "16.0", "# m", "fd", ".", "length", "=", "18.0", "# m", "fd", ".", "depth", "=", "0.0", "# m", "fd", ".", "mass", "=", "0.0" ]	21.818182	12.363636
def _delete_handler(self, handler_class): """Delete a specific handler from our logger.""" to_remove = self._get_handler(handler_class) if not to_remove: logging.warning('Error we should have an element to remove') else: self.handlers.remove(to_remove) ...	[ "def", "_delete_handler", "(", "self", ",", "handler_class", ")", ":", "to_remove", "=", "self", ".", "_get_handler", "(", "handler_class", ")", "if", "not", "to_remove", ":", "logging", ".", "warning", "(", "'Error we should have an element to remove'", ")", "els...	43.75	12.25
def unselectRow(self, row): 'Unselect given row, return True if selected; else return False. O(log n)' if id(row) in self._selectedRows: del self._selectedRows[id(row)] return True else: return False	[ "def", "unselectRow", "(", "self", ",", "row", ")", ":", "if", "id", "(", "row", ")", "in", "self", ".", "_selectedRows", ":", "del", "self", ".", "_selectedRows", "[", "id", "(", "row", ")", "]", "return", "True", "else", ":", "return", "False" ]	36.142857	17
def get_details(self, obj): """ return detail url """ return reverse('api_user_social_links_detail', args=[obj.user.username, obj.pk], request=self.context.get('request'), format=self.context.get('format'))	[ "def", "get_details", "(", "self", ",", "obj", ")", ":", "return", "reverse", "(", "'api_user_social_links_detail'", ",", "args", "=", "[", "obj", ".", "user", ".", "username", ",", "obj", ".", "pk", "]", ",", "request", "=", "self", ".", "context", "....	47.666667	13.166667
def delete(adapter, case_obj, update=False, existing_case=False): """Delete a case and all of it's variants from the database. Args: adapter: Connection to database case_obj(models.Case) update(bool): If we are in the middle of an update existing_case(models.Case): If someth...	[ "def", "delete", "(", "adapter", ",", "case_obj", ",", "update", "=", "False", ",", "existing_case", "=", "False", ")", ":", "# This will overwrite the updated case with the previous one", "if", "update", ":", "adapter", ".", "add_case", "(", "existing_case", ")", ...	32	17.551724
def get_tok(self, tok): ''' Return the name associated with the token, or False if the token is not valid ''' tdata = self.tokens["{0}.get_token".format(self.opts['eauth_tokens'])](self.opts, tok) if not tdata: return {} rm_tok = False if 'exp...	[ "def", "get_tok", "(", "self", ",", "tok", ")", ":", "tdata", "=", "self", ".", "tokens", "[", "\"{0}.get_token\"", ".", "format", "(", "self", ".", "opts", "[", "'eauth_tokens'", "]", ")", "]", "(", "self", ".", "opts", ",", "tok", ")", "if", "not...	28.157895	22.263158
def build_D3bubbleChart(old, MAX_DEPTH, level=1, toplayer=None): """ Similar to standar d3, but nodes with children need to be duplicated otherwise they are not depicted explicitly but just color coded "name": "all", "children": [ {"name": "Biological Science", "size": 9000}, {"name": "Biological Sci...	[ "def", "build_D3bubbleChart", "(", "old", ",", "MAX_DEPTH", ",", "level", "=", "1", ",", "toplayer", "=", "None", ")", ":", "out", "=", "[", "]", "if", "not", "old", ":", "old", "=", "toplayer", "for", "x", "in", "old", ":", "d", "=", "{", "}", ...	35.705882	18.27451
def _perform_type_validation(self, path, typ, value, results): """ Validates a given value to match specified type. The type can be defined as a Schema, type, a type name or [[TypeCode]]. When type is a Schema, it executes validation recursively against that Schema. :param path:...	[ "def", "_perform_type_validation", "(", "self", ",", "path", ",", "typ", ",", "value", ",", "results", ")", ":", "# If type it not defined then skip", "if", "typ", "==", "None", ":", "return", "# Perform validation against schema", "if", "isinstance", "(", "typ", ...	31.212766	21.085106
def get_structure_seqs(self, model): """Gather chain sequences and store in their corresponding ``ChainProp`` objects in the ``chains`` attribute. Args: model (Model): Biopython Model object of the structure you would like to parse """ # Don't overwrite existing ChainProp ...	[ "def", "get_structure_seqs", "(", "self", ",", "model", ")", ":", "# Don't overwrite existing ChainProp objects", "dont_overwrite", "=", "[", "]", "chains", "=", "list", "(", "model", ".", "get_chains", "(", ")", ")", "for", "x", "in", "chains", ":", "if", "...	42.035714	20.821429
def create_local_copy(self, effects=None, store=None): """Creates a Local File Copy on Uploadcare Storage. Args: - effects: Adds CDN image effects. If ``self.default_effects`` property is set effects will be combined with default effects. - store:...	[ "def", "create_local_copy", "(", "self", ",", "effects", "=", "None", ",", "store", "=", "None", ")", ":", "effects", "=", "self", ".", "_build_effects", "(", "effects", ")", "store", "=", "store", "or", "''", "data", "=", "{", "'source'", ":", "self",...	37.142857	20.761905
def get_zone(self, id=None, name=None): """ Get zone object by name or id. """ log.info("Picking zone: %s (%s)" % (name, id)) return self.zones[id or name]	[ "def", "get_zone", "(", "self", ",", "id", "=", "None", ",", "name", "=", "None", ")", ":", "log", ".", "info", "(", "\"Picking zone: %s (%s)\"", "%", "(", "name", ",", "id", ")", ")", "return", "self", ".", "zones", "[", "id", "or", "name", "]" ]	36.6	3.6
def peng_float(snum): r""" Return floating point equivalent of a number represented in engineering notation. :param snum: Number :type snum: :ref:`EngineeringNotationNumber` :rtype: string .. [[[cog cog.out(exobj_eng.get_sphinx_autodoc()) ]]] .. Auto-generated exceptions documentation fo...	[ "def", "peng_float", "(", "snum", ")", ":", "# This can be coded as peng_mant(snum)*(peng_power(snum)[1]), but the", "# \"function unrolling\" is about 4x faster", "snum", "=", "snum", ".", "rstrip", "(", ")", "power", "=", "_SUFFIX_POWER_DICT", "[", "\" \"", "if", "snum", ...	29.321429	23.785714
def translate(self, frame=0): '''Returns a Fasta sequence, translated into amino acids. Starts translating from 'frame', where frame expected to be 0,1 or 2''' return Fasta(self.id, ''.join([genetic_codes.codes[genetic_code].get(self.seq[x:x+3].upper(), 'X') for x in range(frame, len(self)-1-frame, 3)])...	[ "def", "translate", "(", "self", ",", "frame", "=", "0", ")", ":", "return", "Fasta", "(", "self", ".", "id", ",", "''", ".", "join", "(", "[", "genetic_codes", ".", "codes", "[", "genetic_code", "]", ".", "get", "(", "self", ".", "seq", "[", "x"...	106.333333	73.666667
def update_child_calls(self): """Replace child nodes on original function call with their partials""" for node in filter(lambda n: len(n.arg_name), self.child_list): self.data["bound_args"].arguments[node.arg_name] = node.partial() self.updated = True	[ "def", "update_child_calls", "(", "self", ")", ":", "for", "node", "in", "filter", "(", "lambda", "n", ":", "len", "(", "n", ".", "arg_name", ")", ",", "self", ".", "child_list", ")", ":", "self", ".", "data", "[", "\"bound_args\"", "]", ".", "argume...	47.166667	22
def threw(cls, spy, error_type=None): """ Checking the inspector is raised error_type Args: SinonSpy, Exception (defaut: None) """ cls.__is_spy(spy) if not (spy.threw(error_type)): raise cls.failException(cls.message)	[ "def", "threw", "(", "cls", ",", "spy", ",", "error_type", "=", "None", ")", ":", "cls", ".", "__is_spy", "(", "spy", ")", "if", "not", "(", "spy", ".", "threw", "(", "error_type", ")", ")", ":", "raise", "cls", ".", "failException", "(", "cls", ...	33.75	5.75
def SignalAbort(self): """Signals the process to abort.""" self._abort = True if self._foreman_status_wait_event: self._foreman_status_wait_event.set() if self._analysis_mediator: self._analysis_mediator.SignalAbort()	[ "def", "SignalAbort", "(", "self", ")", ":", "self", ".", "_abort", "=", "True", "if", "self", ".", "_foreman_status_wait_event", ":", "self", ".", "_foreman_status_wait_event", ".", "set", "(", ")", "if", "self", ".", "_analysis_mediator", ":", "self", ".",...	34.142857	7.428571
def ensemble_mean_std_max_min(ens): """Calculate ensemble statistics between a results from an ensemble of climate simulations Returns a dataset containing ensemble mean, standard-deviation, minimum and maximum for input climate simulations. Parameters ---------- ens : Ensemble dataset (see xc...	[ "def", "ensemble_mean_std_max_min", "(", "ens", ")", ":", "dsOut", "=", "ens", ".", "drop", "(", "ens", ".", "data_vars", ")", "for", "v", "in", "ens", ".", "data_vars", ":", "dsOut", "[", "v", "+", "'_mean'", "]", "=", "ens", "[", "v", "]", ".", ...	33.341463	20.341463
def reset(self): ''' Reset Stan model and all tracked distributions and parameters. ''' self.parameters = [] self.transformed_parameters = [] self.expressions = [] self.data = [] self.transformed_data = [] self.X = {} self.model = [] ...	[ "def", "reset", "(", "self", ")", ":", "self", ".", "parameters", "=", "[", "]", "self", ".", "transformed_parameters", "=", "[", "]", "self", ".", "expressions", "=", "[", "]", "self", ".", "data", "=", "[", "]", "self", ".", "transformed_data", "="...	34.722222	17.611111
def _remote_methodcall(id, method_name, args, *kwargs): """(Executed on remote engine) convert Ids to real objects, call method """ obj = distob.engine[id] nargs = [] for a in args: if isinstance(a, Id): nargs.append(distob.engine[a]) elif (isinstance(a, collections.Sequenc...	[ "def", "_remote_methodcall", "(", "id", ",", "method_name", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "obj", "=", "distob", ".", "engine", "[", "id", "]", "nargs", "=", "[", "]", "for", "a", "in", "args", ":", "if", "isinstance", "(", ...	40.529412	15.029412
def from_timeseries(ts1, ts2, stride, fftlength=None, overlap=None, window=None, nproc=1, **kwargs): """Calculate the coherence `Spectrogram` between two `TimeSeries`. Parameters ---------- timeseries : :class:`~gwpy.timeseries.TimeSeries` input time-series to process. s...	[ "def", "from_timeseries", "(", "ts1", ",", "ts2", ",", "stride", ",", "fftlength", "=", "None", ",", "overlap", "=", "None", ",", "window", "=", "None", ",", "nproc", "=", "1", ",", "", "", "kwargs", ")", ":", "# format FFT parameters", "if", "fftlen...	33.987654	19.432099
def river_flow(self, source, world, river_list, lake_list): """simulate fluid dynamics by using starting point and flowing to the lowest available point""" current_location = source path = [source] # start the flow while True: x, y = current_location ...	[ "def", "river_flow", "(", "self", ",", "source", ",", "world", ",", "river_list", ",", "lake_list", ")", ":", "current_location", "=", "source", "path", "=", "[", "source", "]", "# start the flow", "while", "True", ":", "x", ",", "y", "=", "current_locatio...	42.5	18.627273
def _stable_names(self): ''' This private method extracts the element names from stable_el. Note that stable_names is a misnomer as stable_el also contains unstable element names with a number 999 for the stable mass numbers. (?!??) ''' stable_names=[] ...	[ "def", "_stable_names", "(", "self", ")", ":", "stable_names", "=", "[", "]", "for", "i", "in", "range", "(", "len", "(", "self", ".", "stable_el", ")", ")", ":", "stable_names", ".", "append", "(", "self", ".", "stable_el", "[", "i", "]", "[", "0"...	36.5	21.5
def stage_redis(self, variable, data): """Stage data in Redis. Args: variable (str): The Redis variable name. data (dict\|list\|str): The data to store in Redis. """ if isinstance(data, int): data = str(data) # handle binary if variable....	[ "def", "stage_redis", "(", "self", ",", "variable", ",", "data", ")", ":", "if", "isinstance", "(", "data", ",", "int", ")", ":", "data", "=", "str", "(", "data", ")", "# handle binary", "if", "variable", ".", "endswith", "(", "'Binary'", ")", ":", "...	38.294118	14.176471
def _xy2hash(x, y, dim): """Convert (x, y) to hashcode. Based on the implementation here: https://en.wikipedia.org/w/index.php?title=Hilbert_curve&oldid=797332503 Pure python implementation. Parameters: x: int x value of point [0, dim) in dim x dim coord system y: int ...	[ "def", "_xy2hash", "(", "x", ",", "y", ",", "dim", ")", ":", "d", "=", "0", "lvl", "=", "dim", ">>", "1", "while", "(", "lvl", ">", "0", ")", ":", "rx", "=", "int", "(", "(", "x", "&", "lvl", ")", ">", "0", ")", "ry", "=", "int", "(", ...	29.923077	21.192308
def export(id, local=False, scrub_pii=False): """Export data from an experiment.""" print("Preparing to export the data...") if local: db_uri = db.db_url else: db_uri = HerokuApp(id).db_uri # Create the data package if it doesn't already exist. subdata_path = os.path.join("dat...	[ "def", "export", "(", "id", ",", "local", "=", "False", ",", "scrub_pii", "=", "False", ")", ":", "print", "(", "\"Preparing to export the data...\"", ")", "if", "local", ":", "db_uri", "=", "db", ".", "db_url", "else", ":", "db_uri", "=", "HerokuApp", "...	26.87931	21.965517
def SetCredentials(api_username,api_passwd): """Establish API username and password associated with APIv2 commands.""" global V2_API_USERNAME global V2_API_PASSWD global _V2_ENABLED _V2_ENABLED = True V2_API_USERNAME = api_username V2_API_PASSWD = api_passwd	[ "def", "SetCredentials", "(", "api_username", ",", "api_passwd", ")", ":", "global", "V2_API_USERNAME", "global", "V2_API_PASSWD", "global", "_V2_ENABLED", "_V2_ENABLED", "=", "True", "V2_API_USERNAME", "=", "api_username", "V2_API_PASSWD", "=", "api_passwd" ]	32.25	13

def get_rec_column_descr(self, colnum, vstorage): """ Get a descriptor entry for the specified column. parameters ---------- colnum: integer The column number, 0 offset vstorage: string See docs in read_columns """ npy_type, isvar,...

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39.431034

16.810345

def get(self, receiver_id=None, event_id=None): """Handle GET request.""" event = self._get_event(receiver_id, event_id) return make_response(event)

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42.25

6.5

def new_job_file(frontier, job_conf_file): '''Returns new Job.''' logging.info("loading %s", job_conf_file) with open(job_conf_file) as f: job_conf = yaml.safe_load(f) return new_job(frontier, job_conf)

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37.5

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def __neighbor_indexes_points(self, optic_object): """! @brief Return neighbors of the specified object in case of sequence of points. @param[in] optic_object (optics_descriptor): Object for which neighbors should be returned in line with connectivity radius. @return (list) List ...

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55.333333

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def get_current_async(): """Return a reference to the currently executing Async job object or None if not in an Async job. """ local_context = _local.get_local_context() if local_context._executing_async: return local_context._executing_async[-1] raise errors.NotInContextError('Not in ...

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33.4

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def attack_batch(self, imgs, labs): """ Run the attack on a batch of instance and labels. """ def compare(x, y): if not isinstance(x, (float, int, np.int64)): x = np.copy(x) if self.TARGETED: x[y] -= self.CONFIDENCE else: x[y] += self.CONFIDENCE ...

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34.934959

17.552846

def viterbi_decode(tag_sequence: torch.Tensor, transition_matrix: torch.Tensor, tag_observations: Optional[List[int]] = None): """ Perform Viterbi decoding in log space over a sequence given a transition matrix specifying pairwise (transition) potentials between tags an...

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46.464286

22.607143

def image_search(auth=None, **kwargs): ''' Search for images CLI Example: .. code-block:: bash salt '*' glanceng.image_search name=image1 salt '*' glanceng.image_search ''' cloud = get_operator_cloud(auth) kwargs = _clean_kwargs(**kwargs) return cloud.search_images(**k...

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22.357143

19.071429

def open(self): """ Calls SetupDiGetClassDevs to obtain a handle to an opaque device information set that describes the device interfaces supported by all the USB collections currently installed in the system. The application should specify DIGCF.PRESENT and DIGCF.INTERFACED...

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46

23.5

def load_off(file_obj, **kwargs): """ Load an OFF file into the kwargs for a Trimesh constructor Parameters ---------- file_obj : file object Contains an OFF file Returns ---------- loaded : dict kwargs for Trimesh constructor """ header_string =...

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29.422222

16.488889

def set_breakpoints(self, breakpoints): """Set breakpoints""" self.clear_breakpoints() for line_number, condition in breakpoints: self.toogle_breakpoint(line_number, condition) self.breakpoints = self.get_breakpoints()

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42.833333

7.666667

def generate_code_verifier(n_bytes=64): """ source: https://github.com/openstack/deb-python-oauth2client Generates a 'code_verifier' as described in section 4.1 of RFC 7636. This is a 'high-entropy cryptographic random string' that will be impractical for an attacker to guess. Args: n_by...

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40.458333

19.208333

def unwrap_single(self): """ Unwrap the single Result item. Call this from single-operation methods to return the actual result :return: The actual result """ try: return next(self.itervalues()) except AttributeError: return next(iter(self....

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32.1

9.9

def command(self, rs_id, command, *args): """Call a ReplicaSet method.""" rs = self._storage[rs_id] try: return getattr(rs, command)(*args) except AttributeError: raise ValueError("Cannot issue the command %r to ReplicaSet %s" % (comma...

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40.5

11.875

def to_list_of(self, state): # type: (S) -> List[B] '''Returns a list of all the foci within `state`. Requires kind Fold. This method will raise TypeError if the optic has no way to get any foci. ''' if not self._is_kind(Fold): raise TypeError('Must be an ins...

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35.846154

18.461538

def p_declarations(self, p): """declarations : declarations declaration | declaration""" n = len(p) if n == 3: p[0] = p[1] + [p[2]] elif n == 2: p[0] = [p[1]]

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28.875

12.375

def parse_sidebar(self, media_page): """Parses the DOM and returns media attributes in the sidebar. :type media_page: :class:`bs4.BeautifulSoup` :param media_page: MAL media page's DOM :rtype: dict :return: media attributes. :raises: InvalidMediaError, MalformedMediaPageError """ med...

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37.119205

25.430464

def get_queryset_filters(self, query): """ Return the filtered queryset """ conditions = Q() for field_name in self.fields: conditions |= Q(**{ self._construct_qs_filter(field_name): query }) return conditions

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28.8

9.4

def _os_walk(directory, recurse=True, **kwargs): """ Work like os.walk but if recurse is False just list current directory """ if recurse: for root, dirs, files in os.walk(directory, **kwargs): yield root, dirs, files else: files = [] for filename in os.listdir(di...

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35.153846

14.230769

def delete(self): """ Destructor. """ if self.glucose: pysolvers.glucose3_del(self.glucose) self.glucose = None if self.prfile: self.prfile.close()

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20.636364

15.545455

def _inferSchema(self, rdd, samplingRatio=None, names=None): """ Infer schema from an RDD of Row or tuple. :param rdd: an RDD of Row or tuple :param samplingRatio: sampling ratio, or no sampling (default) :return: :class:`pyspark.sql.types.StructType` """ first =...

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43.741935

19.225806

def pushtx(tx_hex, coin_symbol='btc', api_key=None): ''' Takes a signed transaction hex binary (and coin_symbol) and broadcasts it to the bitcoin network. ''' assert is_valid_coin_symbol(coin_symbol) assert api_key, 'api_key required' url = _get_pushtx_url(coin_symbol=coin_symbol) logger....

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27.555556

28

def logger_initial_config(service_name=None, log_level=None, logger_format=None, logger_date_format=None): '''Set initial logging configurations. :param service_name: Name of the service :type logger: String :param log_level...

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32.852941

20.029412

def nodes(self, type=None, failed=False, participant_id=None): """Get nodes in the network. type specifies the type of Node. Failed can be "all", False (default) or True. If a participant_id is passed only nodes with that participant_id will be returned. """ if type is N...

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38.633333

21.2

def get_contour_pd_plot(self): """ Plot a contour phase diagram plot, where phase triangles are colored according to degree of instability by interpolation. Currently only works for 3-component phase diagrams. Returns: A matplotlib plot object. """ fr...

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31.6

17.142857

def _stream(self): """execute subprocess with timeout Usage:: >>> with cmd_proc.run_with_timeout() as cmd_proc: ... stdout, stderr = cmd_proc.communicate() ... >>> assert cmd_proc.proc.return_code == 0, "proc exec failed" """ timer =...

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28.333333

18.222222

def logged(level=logging.DEBUG): """ Useful logging decorator. If a method is logged, the beginning and end of the method call will be logged at a pre-specified level. Args: level: Level to log method at. Defaults to DEBUG. """ def wrap(f): _logger = logging.getLogger("{}.{}".fo...

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36.761905

23.238095

def request(method, url, **kwargs): """same as requests/requests/api.py request(...)""" time_before_request = time() # session start session = SessionSinglePool() # proxies kwargs['proxies'] = settings['outgoing'].get('proxies') or None # timeout if 'timeout' in kwargs: timeou...

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29.74359

21.410256

def custom_handler(self, glade, function_name, widget_name, str1, str2, int1, int2): """ Generic handler for creating custom widgets, internally used to enable custom widgets (custom widgets of glade). The custom widgets have a creation function specified in design time. Those c...

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43.75

24.15

def _create_db(self): """Creates a new databae or opens a connection to an existing one. .. note:: You can't share sqlite3 connections between threads (by default) hence we setup the db here. It has the upside of running async. """ log.debug("Creating sqlite data...

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def _find_vm(name, data, quiet=False): ''' Scan the query data for the named VM ''' for hv_ in data: # Check if data is a dict, and not '"virt.full_info" is not available.' if not isinstance(data[hv_], dict): continue if name in data[hv_].get('vm_info', {}): ...

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36.5

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def get_client_settings_config_file(**kwargs): # pylint: disable=inconsistent-return-statements """Retrieve client settings from the possible config file locations. :param \\*\\*kwargs: Arguments that are passed into the client instance """ config_files = ['/etc/softlayer.conf', '~/.softlayer'] ...

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39.576923

20.615385

def _wrap_paginated_response(cls, request, response, controls, data, head=None): """Builds the metadata for a pagingated response and wraps everying in a JSON encoded web.Response """ paging_response = response['paging'] if head is None: ...

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async def start(self, **kwargs): """Start the pairing server and publish service.""" zeroconf = kwargs['zeroconf'] self._name = kwargs['name'] self._pairing_guid = kwargs.get('pairing_guid', None) or \ self._generate_random_guid() self._web_server = web.Server(self.h...

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def get_yaml_schema(self): """GetYamlSchema. [Preview API] :rtype: object """ response = self._send(http_method='GET', location_id='1f9990b9-1dba-441f-9c2e-6485888c42b6', version='5.1-preview.1') return self._des...

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37.777778

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def _remlogic_time(time_cell, date): """Reads RemLogic time string to datetime Parameters ---------- time_cell : str entire time cell from text file date : datetime start date from text file Returns ------- datetime date and time """ stage_st...

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25.192308

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def CopyToDateTimeString(self): """Copies the POSIX timestamp to a date and time string. Returns: str: date and time value formatted as: "YYYY-MM-DD hh:mm:ss.######" or None if the timestamp is missing. """ if (self._timestamp is None or self._timestamp < self._INT64_MIN or self...

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34.583333

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def get_command(self, ctx, cmd_name): """Get command for click.""" path = "%s.%s" % (__name__, cmd_name) path = path.replace("-", "_") module = importlib.import_module(path) return getattr(module, 'cli')

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def cons(collection, value): """Extends a collection with a value.""" if isinstance(value, collections.Mapping): if collection is None: collection = {} collection.update(**value) elif isinstance(value, six.string_types): if collection is None: collection = []...

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def stop_stack(awsclient, stack_name, use_suspend=False): """Stop an existing stack on AWS cloud. :param awsclient: :param stack_name: :param use_suspend: use suspend and resume on the autoscaling group :return: exit_code """ exit_code = 0 # check for DisableStop #disable_stop = co...

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40.948276

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def checkResponse(request): ''' Returns if a request has an okay error code, otherwise raises InvalidRequest. ''' # Check the status code of the returned request if str(request.status_code)[0] not in ['2', '3']: w = str(request.text).split('\\r')[0][2:] r...

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34.8

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def call(__self, __obj, *args, **kwargs): """Call the callable with the arguments and keyword arguments provided but inject the active context or environment as first argument if the callable is a :func:`contextfunction` or :func:`environmentfunction`. """ if __debug__: ...

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46.625

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def set_all_requested_intervals(self, requested_intervals): """ Sets the requested intervals for all workflow :param requested_intervals: The requested intervals :return: None :type requested_intervals: TimeIntervals """ for workflow_id in self.workflows: ...

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43.9

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def _find_own_cgroups(): """ For all subsystems, return the information in which (sub-)cgroup this process is in. (Each process is in exactly cgroup in each hierarchy.) @return a generator of tuples (subsystem, cgroup) """ try: with open('/proc/self/cgroup', 'rt') as ownCgroupsFile: ...

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39.833333

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def _scalar2array(d): """Convert a dictionary with scalar elements and string indices '_1234' to a dictionary of arrays. Unspecified entries are np.nan.""" da = {} for k, v in d.items(): if '_' not in k: da[k] = v else: name = ''.join(k.split('_')[:-1]) ...

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35.588235

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def to_list(self): """ To a list of dicts (each dict is an instances) """ ret = [] for instance in self.instances: ret.append(instance.to_dict()) return ret

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26.125

10.625

async def extended_analog(self, pin, data): """ This method will send an extended-data analog write command to the selected pin. :param pin: 0 - 127 :param data: 0 - 0xfffff :returns: No return value """ analog_data = [pin, data & 0x7f, (data >> 7) & 0x...

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def fit(self, X, y, **kwargs): """ Fits the estimator to calculate feature correlation to dependent variable. Parameters ---------- X : ndarray or DataFrame of shape n x m A matrix of n instances with m features y : ndarray or Series of length n ...

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30.916667

20.5

def _load(self, exit_on_failure): """One you have added all your configuration data (Section, Element, ...) you need to load data from the config file.""" # pylint: disable-msg=W0621 log = logging.getLogger('argtoolbox') discoveredFileList = [] if self.config_file: ...

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42.068182

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def get_lowest_probable_prepared_certificate_in_view( self, view_no) -> Optional[int]: """ Return lowest pp_seq_no of the view for which can be prepared but choose from unprocessed PRE-PREPAREs and PREPAREs. """ # TODO: Naive implementation, dont need to iterate over ...

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36.269231

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def delete(self, key, sort_key): primary_key = key key = self.prefixed('{}:{}'.format(key, sort_key)) """ Delete an element in dictionary """ self.logger.debug('Storage - delete {}'.format(key)) if sort_key is not None: self.cache[self.prefixed(primary_key)].remove(so...

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42.214286

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def _get_src_path_line_nodes_jacoco(self, xml_document, src_path): """ Return a list of nodes containing line information for `src_path` in `xml_document`. If file is not present in `xml_document`, return None """ files = [] packages = [pkg for pkg in xml_docume...

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35.782609

20.478261

def most_recent_year(): """ This year, if it's December. The most recent year, otherwise. Note: Advent of Code started in 2015 """ aoc_now = datetime.datetime.now(tz=AOC_TZ) year = aoc_now.year if aoc_now.month < 12: year -= 1 if year < 2015: raise AocdError("Time tra...

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26.692308

11.615385

def serialize_footer(signer): """Uses the signer object which has been used to sign the message to generate the signature, then serializes that signature. :param signer: Cryptographic signer object :type signer: aws_encryption_sdk.internal.crypto.Signer :returns: Serialized footer :rtype: bytes...

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37

17.428571

def _get_privacy(self, table_name): """gets current privacy of a table""" ds_manager = DatasetManager(self.auth_client) try: dataset = ds_manager.get(table_name) return dataset.privacy.lower() except NotFoundException: return None

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36.375

10

def git(ctx, url, private, sync): # pylint:disable=assign-to-new-keyword """Set/Sync git repo on this project. Uses [Caching](/references/polyaxon-cli/#caching) Example: \b ```bash $ polyaxon project git --url=https://github.com/polyaxon/polyaxon-quick-start ``` \b ```bash $...

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35.470588

31.196078

def token_list_width(tokenlist): """ Return the character width of this token list. (Take double width characters into account.) :param tokenlist: List of (token, text) or (token, text, mouse_handler) tuples. """ ZeroWidthEscape = Token.ZeroWidthEscape return sum(get_c...

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38.9

17.3

def toXMLname(string): """Convert string to a XML name.""" if string.find(':') != -1 : (prefix, localname) = string.split(':',1) else: prefix = None localname = string T = unicode(localname) N = len(localname) X = []; for i in range(N) : if i< N-1 and T[...

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29.642857

16.892857

def open(self, inp, opts={}): """Use this to set where to read from. Set opts['try_lineedit'] if you want this input to interact with GNU-like readline library. By default, we will assume to try importing and using readline. If readline is not importable, line editing is not ava...

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43.911765

19.117647

def main(self) -> None: """ Main entry point. Runs :func:`service`. """ # Actual main service code. try: self.service() except Exception as e: self.error("Unexpected exception: {e}\n{t}".format( e=e, t=traceback.format_exc()))

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30.5

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def put_value(self, value, timeout=None): """Put a value to the Attribute and wait for completion""" self._context.put(self._data.path + ["value"], value, timeout=timeout)

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61.666667

13

def iter_annotation_values(graph, annotation: str) -> Iterable[str]: """Iterate over all of the values for an annotation used in the graph. :param pybel.BELGraph graph: A BEL graph :param str annotation: The annotation to grab """ return ( value for _, _, data in graph.edges(data=Tr...

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34.833333

16.416667

def experiments_fmri_create(self, experiment_id, filename): """Create functional data object from given file and associate the object with the specified experiment. Parameters ---------- experiment_id : string Unique experiment identifier filename : File-type...

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40.555556

18.305556

def target_to_ipv4_long(target): """ Attempt to return a IPv4 long-range list from a target string. """ splitted = target.split('-') if len(splitted) != 2: return None try: start_packed = inet_pton(socket.AF_INET, splitted[0]) end_packed = inet_pton(socket.AF_INET, splitted[1]) ...

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32.928571

17.357143

def meta_features_path(self, path): """Returns path for meta-features Args: path (str): Absolute/local path of xcessiv folder """ return os.path.join( path, app.config['XCESSIV_META_FEATURES_FOLDER'], str(self.id) )...

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29

15.727273

def preprocess(options): assert options.bfile!=None, 'Please specify a bfile.' """ computing the covariance matrix """ if options.compute_cov: assert options.bfile!=None, 'Please specify a bfile.' assert options.cfile is not None, 'Specify covariance matrix basename' print('Computing ...

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41.397436

18.512821

def _unpack_token_compact(token): """ Unpack a compact-form serialized JWT. Returns (header, payload, signature, signing_input) on success Raises DecodeError on bad input """ if isinstance(token, (str, unicode)): token = token.encode('utf-8') try: signing_input, crypto_segme...

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31.818182

19.454545

def voice(self): """tuple. contain text and lang code """ dbid = self.lldb.dbid text, lang = self._voiceoverdb.get_text_lang(dbid) return text, lang

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30.5

11.333333

def clean(self): """ Pass the provided username and password to the active authentication backends and verify the user account is not disabled. If authentication succeeds, the ``User`` object is assigned to the form so it can be accessed in the view. """ username ...

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44.793103

22.241379

def _set_route_source(self, v, load=False): """ Setter method for route_source, mapped from YANG variable /rbridge_id/route_map/content/match/ipv6/route_source (container) If this variable is read-only (config: false) in the source YANG file, then _set_route_source is considered as a private method....

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71.125

34.416667

def main(): """ Example application that opens a serial device and prints messages to the terminal. """ try: # Retrieve the specified serial device. device = AlarmDecoder(SerialDevice(interface=SERIAL_DEVICE)) # Set up an event handler and open the device device.on_messa...

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31.894737

19.894737

def create_tag(self, tag_name): """ Create a new tag based on the working tree's revision. :param tag_name: The name of the tag to create (a string). """ # Make sure the local repository exists and supports a working tree. self.create() self.ensure_working_tree()...

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43.083333

20.25

def do_status(self, args): '''print the number of work units in an existing work spec''' work_spec_name = self._get_work_spec_name(args) status = self.task_master.status(work_spec_name) self.stdout.write(json.dumps(status, indent=4, sort_keys=True) + '\n')

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def create_database(self): """ Create postgres database. """ self.print_message("Creating database '%s'" % self.databases['destination']['name']) self.export_pgpassword('destination') args = [ "createdb", self.databases['destination']['name'], ] ar...

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def load_foundation_sample_data(fd): """ Sample data for the Foundation object :param fd: Foundation Object :return: """ # foundation fd.width = 16.0 # m fd.length = 18.0 # m fd.depth = 0.0 # m fd.mass = 0.0

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def _delete_handler(self, handler_class): """Delete a specific handler from our logger.""" to_remove = self._get_handler(handler_class) if not to_remove: logging.warning('Error we should have an element to remove') else: self.handlers.remove(to_remove) ...

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def unselectRow(self, row): 'Unselect given row, return True if selected; else return False. O(log n)' if id(row) in self._selectedRows: del self._selectedRows[id(row)] return True else: return False

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def get_details(self, obj): """ return detail url """ return reverse('api_user_social_links_detail', args=[obj.user.username, obj.pk], request=self.context.get('request'), format=self.context.get('format'))

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def delete(adapter, case_obj, update=False, existing_case=False): """Delete a case and all of it's variants from the database. Args: adapter: Connection to database case_obj(models.Case) update(bool): If we are in the middle of an update existing_case(models.Case): If someth...

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def get_tok(self, tok): ''' Return the name associated with the token, or False if the token is not valid ''' tdata = self.tokens["{0}.get_token".format(self.opts['eauth_tokens'])](self.opts, tok) if not tdata: return {} rm_tok = False if 'exp...

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def build_D3bubbleChart(old, MAX_DEPTH, level=1, toplayer=None): """ Similar to standar d3, but nodes with children need to be duplicated otherwise they are not depicted explicitly but just color coded "name": "all", "children": [ {"name": "Biological Science", "size": 9000}, {"name": "Biological Sci...

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def _perform_type_validation(self, path, typ, value, results): """ Validates a given value to match specified type. The type can be defined as a Schema, type, a type name or [[TypeCode]]. When type is a Schema, it executes validation recursively against that Schema. :param path:...

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def get_structure_seqs(self, model): """Gather chain sequences and store in their corresponding ``ChainProp`` objects in the ``chains`` attribute. Args: model (Model): Biopython Model object of the structure you would like to parse """ # Don't overwrite existing ChainProp ...

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def create_local_copy(self, effects=None, store=None): """Creates a Local File Copy on Uploadcare Storage. Args: - effects: Adds CDN image effects. If ``self.default_effects`` property is set effects will be combined with default effects. - store:...

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def get_zone(self, id=None, name=None): """ Get zone object by name or id. """ log.info("Picking zone: %s (%s)" % (name, id)) return self.zones[id or name]

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def peng_float(snum): r""" Return floating point equivalent of a number represented in engineering notation. :param snum: Number :type snum: :ref:`EngineeringNotationNumber` :rtype: string .. [[[cog cog.out(exobj_eng.get_sphinx_autodoc()) ]]] .. Auto-generated exceptions documentation fo...

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def translate(self, frame=0): '''Returns a Fasta sequence, translated into amino acids. Starts translating from 'frame', where frame expected to be 0,1 or 2''' return Fasta(self.id, ''.join([genetic_codes.codes[genetic_code].get(self.seq[x:x+3].upper(), 'X') for x in range(frame, len(self)-1-frame, 3)])...

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def update_child_calls(self): """Replace child nodes on original function call with their partials""" for node in filter(lambda n: len(n.arg_name), self.child_list): self.data["bound_args"].arguments[node.arg_name] = node.partial() self.updated = True

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def threw(cls, spy, error_type=None): """ Checking the inspector is raised error_type Args: SinonSpy, Exception (defaut: None) """ cls.__is_spy(spy) if not (spy.threw(error_type)): raise cls.failException(cls.message)

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def SignalAbort(self): """Signals the process to abort.""" self._abort = True if self._foreman_status_wait_event: self._foreman_status_wait_event.set() if self._analysis_mediator: self._analysis_mediator.SignalAbort()

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def ensemble_mean_std_max_min(ens): """Calculate ensemble statistics between a results from an ensemble of climate simulations Returns a dataset containing ensemble mean, standard-deviation, minimum and maximum for input climate simulations. Parameters ---------- ens : Ensemble dataset (see xc...

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def reset(self): ''' Reset Stan model and all tracked distributions and parameters. ''' self.parameters = [] self.transformed_parameters = [] self.expressions = [] self.data = [] self.transformed_data = [] self.X = {} self.model = [] ...

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def _remote_methodcall(id, method_name, *args, **kwargs): """(Executed on remote engine) convert Ids to real objects, call method """ obj = distob.engine[id] nargs = [] for a in args: if isinstance(a, Id): nargs.append(distob.engine[a]) elif (isinstance(a, collections.Sequenc...

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def from_timeseries(ts1, ts2, stride, fftlength=None, overlap=None, window=None, nproc=1, **kwargs): """Calculate the coherence `Spectrogram` between two `TimeSeries`. Parameters ---------- timeseries : :class:`~gwpy.timeseries.TimeSeries` input time-series to process. s...

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def river_flow(self, source, world, river_list, lake_list): """simulate fluid dynamics by using starting point and flowing to the lowest available point""" current_location = source path = [source] # start the flow while True: x, y = current_location ...

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def _stable_names(self): ''' This private method extracts the element names from stable_el. Note that stable_names is a misnomer as stable_el also contains unstable element names with a number 999 for the *stable* mass numbers. (?!??) ''' stable_names=[] ...

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def stage_redis(self, variable, data): """Stage data in Redis. Args: variable (str): The Redis variable name. data (dict|list|str): The data to store in Redis. """ if isinstance(data, int): data = str(data) # handle binary if variable....

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def _xy2hash(x, y, dim): """Convert (x, y) to hashcode. Based on the implementation here: https://en.wikipedia.org/w/index.php?title=Hilbert_curve&oldid=797332503 Pure python implementation. Parameters: x: int x value of point [0, dim) in dim x dim coord system y: int ...

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def export(id, local=False, scrub_pii=False): """Export data from an experiment.""" print("Preparing to export the data...") if local: db_uri = db.db_url else: db_uri = HerokuApp(id).db_uri # Create the data package if it doesn't already exist. subdata_path = os.path.join("dat...

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def SetCredentials(api_username,api_passwd): """Establish API username and password associated with APIv2 commands.""" global V2_API_USERNAME global V2_API_PASSWD global _V2_ENABLED _V2_ENABLED = True V2_API_USERNAME = api_username V2_API_PASSWD = api_passwd

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