kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def show(only_path=False): """Show the current config.""" logger.setLevel(logging.INFO) infos = ["\n", f'Instance path: "{current_app.instance_path}"'] logger.info("\n ".join(infos)) if not only_path: log_config(current_app.config)	[ "def", "show", "(", "only_path", "=", "False", ")", ":", "logger", ".", "setLevel", "(", "logging", ".", "INFO", ")", "infos", "=", "[", "\"\\n\"", ",", "f'Instance path: \"{current_app.instance_path}\"'", "]", "logger", ".", "info", "(", "\"\\n \"", ".", "...	28.222222	17.111111
def find_numeration(docbody, title): """Find numeration pattern 1st try to find numeration in the title e.g. References [4] Riotto... 2nd find the numeration alone in the line after the title e.g. References 1 Riotto 3rnd find the numeration in the following line e.g. ...	[ "def", "find_numeration", "(", "docbody", ",", "title", ")", ":", "ref_details", ",", "found_title", "=", "find_numeration_in_title", "(", "docbody", ",", "title", ")", "if", "not", "ref_details", ":", "ref_details", ",", "found_title", "=", "find_numeration_in_bo...	23.130435	23
def _find_links(k_vec, sfx, rsfx, k): """Find sfx/rsfx recursively.""" k_vec.sort() if 0 in k_vec: return k_vec else: if sfx[k] not in k_vec: k_vec.append(sfx[k]) for i in range(len(rsfx[k])): if rsfx[k][i] not in k_vec: k_vec.append(rsfx[k...	[ "def", "_find_links", "(", "k_vec", ",", "sfx", ",", "rsfx", ",", "k", ")", ":", "k_vec", ".", "sort", "(", ")", "if", "0", "in", "k_vec", ":", "return", "k_vec", "else", ":", "if", "sfx", "[", "k", "]", "not", "in", "k_vec", ":", "k_vec", ".",...	29.75	12.375
def check_file_for_tabs(filename, verbose=True): """identifies if the file contains tabs and returns True if it does. It also prints the location of the lines and columns. If verbose is set to False, the location is not printed. :param verbose: if true prints information about issues :param filenam...	[ "def", "check_file_for_tabs", "(", "filename", ",", "verbose", "=", "True", ")", ":", "file_contains_tabs", "=", "False", "with", "open", "(", "filename", ")", "as", "f", ":", "lines", "=", "f", ".", "read", "(", ")", ".", "split", "(", "\"\\n\"", ")",...	38.259259	16.148148
def generateLatticeFile(self, beamline, filename=None, format='elegant'): """ generate simulation files for lattice analysis, e.g. ".lte" for elegant, ".madx" for madx input parameters: :param beamline: keyword for beamline :param filename: name of lte/mad file, ...	[ "def", "generateLatticeFile", "(", "self", ",", "beamline", ",", "filename", "=", "None", ",", "format", "=", "'elegant'", ")", ":", "\"\"\"\n if not self.isBeamline(beamline):\n print(\"%s is a valid defined beamline, do not process.\" % (beamline))\n re...	41.670886	20.43038
def step_it_should_fail_with(context): ''' EXAMPLE: ... when I run "behave ..." then it should fail with: """ TEXT """ ''' assert context.text is not None, "ENSURE: multiline text is provided." step_command_output_should_contain(context) ...	[ "def", "step_it_should_fail_with", "(", "context", ")", ":", "assert", "context", ".", "text", "is", "not", "None", ",", "\"ENSURE: multiline text is provided.\"", "step_command_output_should_contain", "(", "context", ")", "assert_that", "(", "context", ".", "command_re...	29	18.230769
def teardown(file): # pylint:disable=redefined-builtin """Teardown a polyaxon deployment given a config file.""" config = read_deployment_config(file) manager = DeployManager(config=config, filepath=file) exception = None try: if click.confirm('Would you like to execute pre-delete hooks?', ...	[ "def", "teardown", "(", "file", ")", ":", "# pylint:disable=redefined-builtin", "config", "=", "read_deployment_config", "(", "file", ")", "manager", "=", "DeployManager", "(", "config", "=", "config", ",", "filepath", "=", "file", ")", "exception", "=", "None",...	39.25	19.8125
def _GetUnsortedNotifications(self, queue_shard, notifications_by_session_id=None): """Returns all the available notifications for a queue_shard. Args: queue_shard: urn of queue shard notifications_by_session_id: store notifications in...	[ "def", "_GetUnsortedNotifications", "(", "self", ",", "queue_shard", ",", "notifications_by_session_id", "=", "None", ")", ":", "if", "notifications_by_session_id", "is", "None", ":", "notifications_by_session_id", "=", "{", "}", "end_time", "=", "self", ".", "froze...	45.083333	22.694444
def iterSourceCode(paths): """ Iterate over all Python source files in C{paths}. @param paths: A list of paths. Directories will be recursed into and any .py files found will be yielded. Any non-directories will be yielded as-is. """ for path in paths: if os.path.isdir(pat...	[ "def", "iterSourceCode", "(", "paths", ")", ":", "for", "path", "in", "paths", ":", "if", "os", ".", "path", ".", "isdir", "(", "path", ")", ":", "for", "dirpath", ",", "dirnames", ",", "filenames", "in", "os", ".", "walk", "(", "path", ")", ":", ...	35.125	17.25
def get_golden_topics(self, lang): """Return the topics mastered ("golden") by a user in a language.""" return [topic['title'] for topic in self.user_data.language_data[lang]['skills'] if topic['learned'] and topic['strength'] == 1.0]	[ "def", "get_golden_topics", "(", "self", ",", "lang", ")", ":", "return", "[", "topic", "[", "'title'", "]", "for", "topic", "in", "self", ".", "user_data", ".", "language_data", "[", "lang", "]", "[", "'skills'", "]", "if", "topic", "[", "'learned'", ...	55.6	14.8
def _check_pong(self): """Checks if a Pong message was received. :return: """ self.pong_timer.cancel() if self.pong_received: self.log.debug("_check_pong(): Pong received in time.") self.pong_received = False else: # reconnect ...	[ "def", "_check_pong", "(", "self", ")", ":", "self", ".", "pong_timer", ".", "cancel", "(", ")", "if", "self", ".", "pong_received", ":", "self", ".", "log", ".", "debug", "(", "\"_check_pong(): Pong received in time.\"", ")", "self", ".", "pong_received", "...	32	16
def ParseFileObject(self, parser_mediator, file_object): """Parses a Java WebStart Cache IDX file-like object. Args: parser_mediator (ParserMediator): mediates interactions between parsers and other components, such as storage and dfvfs. file_object (dvfvs.FileIO): a file-like object to p...	[ "def", "ParseFileObject", "(", "self", ",", "parser_mediator", ",", "file_object", ")", ":", "file_header_map", "=", "self", ".", "_GetDataTypeMap", "(", "'java_idx_file_header'", ")", "try", ":", "file_header", ",", "file_offset", "=", "self", ".", "_ReadStructur...	40.274336	21.778761
def setCredentialValues(self, username=None, password=None, public_key=None, private_key=None, new=False): """Set the values in disk.0.os.credentials.*.""" credentials_base = "disk.0.os.credentials." if new: credentials_base = "disk.0.os.credentials.new." if username: ...	[ "def", "setCredentialValues", "(", "self", ",", "username", "=", "None", ",", "password", "=", "None", ",", "public_key", "=", "None", ",", "private_key", "=", "None", ",", "new", "=", "False", ")", ":", "credentials_base", "=", "\"disk.0.os.credentials.\"", ...	43.066667	26
def split_elements(value): """Split a string with comma or space-separated elements into a list.""" l = [v.strip() for v in value.split(',')] if len(l) == 1: l = value.split() return l	[ "def", "split_elements", "(", "value", ")", ":", "l", "=", "[", "v", ".", "strip", "(", ")", "for", "v", "in", "value", ".", "split", "(", "','", ")", "]", "if", "len", "(", "l", ")", "==", "1", ":", "l", "=", "value", ".", "split", "(", ")...	33.833333	13.833333
def delete(self): """ Deletes the space """ return self._client._delete( self.__class__.base_url( self.sys['id'] ) )	[ "def", "delete", "(", "self", ")", ":", "return", "self", ".", "_client", ".", "_delete", "(", "self", ".", "__class__", ".", "base_url", "(", "self", ".", "sys", "[", "'id'", "]", ")", ")" ]	18.8	15.4
def config_control(inherit_napalm_device=None, **kwargs): # pylint: disable=unused-argument ''' Will check if the configuration was changed. If differences found, will try to commit. In case commit unsuccessful, will try to rollback. :return: A tuple with a boolean that specifies if the config wa...	[ "def", "config_control", "(", "inherit_napalm_device", "=", "None", ",", "", "", "kwargs", ")", ":", "# pylint: disable=unused-argument", "result", "=", "True", "comment", "=", "''", "changed", ",", "not_changed_rsn", "=", "config_changed", "(", "inherit_napalm_de...	32.564103	26.153846
def exit_after(s): """ Use as decorator to exit process if function takes longer than s seconds. Direct call is available via exit_after(TIMEOUT_IN_S)(fce)(args). Inspired by https://stackoverflow.com/a/31667005 """ def outer(fn): def inner(args, *kwargs): timer = th...	[ "def", "exit_after", "(", "s", ")", ":", "def", "outer", "(", "fn", ")", ":", "def", "inner", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "timer", "=", "threading", ".", "Timer", "(", "s", ",", "thread", ".", "interrupt_main", ")", "time...	27.08	20.2
def gene_by_protein_id(self, protein_id): """ Get the gene ID associated with the given protein ID, return its Gene object """ gene_id = self.gene_id_of_protein_id(protein_id) return self.gene_by_id(gene_id)	[ "def", "gene_by_protein_id", "(", "self", ",", "protein_id", ")", ":", "gene_id", "=", "self", ".", "gene_id_of_protein_id", "(", "protein_id", ")", "return", "self", ".", "gene_by_id", "(", "gene_id", ")" ]	35.571429	7
def _generate_features(self, feature_extractors): """Run all FeatureExtractors and record results in a key-value format. :param feature_extractors: iterable of `FeatureExtractor` objects. """ results = [pd.DataFrame()] n_ext = len(feature_extractors) for i, extractor in...	[ "def", "_generate_features", "(", "self", ",", "feature_extractors", ")", ":", "results", "=", "[", "pd", ".", "DataFrame", "(", ")", "]", "n_ext", "=", "len", "(", "feature_extractors", ")", "for", "i", ",", "extractor", "in", "enumerate", "(", "feature_e...	38.384615	14.884615
def duplicate(self): ''' Returns a copy of the current group, including its lines. @returns: Group ''' return self.__class__(amount=self.amount, date=self.date, method=self.method, ref=self.ref)	[ "def", "duplicate", "(", "self", ")", ":", "return", "self", ".", "__class__", "(", "amount", "=", "self", ".", "amount", ",", "date", "=", "self", ".", "date", ",", "method", "=", "self", ".", "method", ",", "ref", "=", "self", ".", "ref", ")" ]	36.857143	24
def _concat_datetime(to_concat, axis=0, typs=None): """ provide concatenation of an datetimelike array of arrays each of which is a single M8[ns], datetimet64[ns, tz] or m8[ns] dtype Parameters ---------- to_concat : array of arrays axis : axis to provide concatenation typs : set of to_...	[ "def", "_concat_datetime", "(", "to_concat", ",", "axis", "=", "0", ",", "typs", "=", "None", ")", ":", "if", "typs", "is", "None", ":", "typs", "=", "get_dtype_kinds", "(", "to_concat", ")", "# multiple types, need to coerce to object", "if", "len", "(", "t...	32.177778	19.911111
def task_loop(tasks, execute, wait=None, store=TaskStore()): """ The inner task loop for a task runner. execute: A function that runs a task. It should take a task as its sole argument, and may optionally return a TaskResult. wait: (optional, None) A function to run whenever there aren't any ...	[ "def", "task_loop", "(", "tasks", ",", "execute", ",", "wait", "=", "None", ",", "store", "=", "TaskStore", "(", ")", ")", ":", "completed", "=", "set", "(", ")", "failed", "=", "set", "(", ")", "exceptions", "=", "[", "]", "def", "collect", "(", ...	32.59375	18.625
def get(self, q, limit=None): """ Performs a search against the predict endpoint :param q: query to be searched for [STRING] :return: { score: [0\|1] } """ uri = '{}/predict?q={}'.format(self.client.remote, q) self.logger.debug(uri) body = self.client.get...	[ "def", "get", "(", "self", ",", "q", ",", "limit", "=", "None", ")", ":", "uri", "=", "'{}/predict?q={}'", ".", "format", "(", "self", ".", "client", ".", "remote", ",", "q", ")", "self", ".", "logger", ".", "debug", "(", "uri", ")", "body", "=",...	28.583333	14.25
def pipeline(self): """Returns :class:`Pipeline` object to execute bulk of commands. It is provided for convenience. Commands can be pipelined without it. Example: >>> pipe = redis.pipeline() >>> fut1 = pipe.incr('foo') # NO `await` as it will block forever! >>...	[ "def", "pipeline", "(", "self", ")", ":", "return", "Pipeline", "(", "self", ".", "_pool_or_conn", ",", "self", ".", "__class__", ",", "loop", "=", "self", ".", "_pool_or_conn", ".", "_loop", ")" ]	32.307692	17.884615
def get_service( service_name, inactive=False, completed=False ): """ Get a dictionary describing a service :param service_name: the service name :type service_name: str :param inactive: whether to include inactive services :type inactive: bool :param ...	[ "def", "get_service", "(", "service_name", ",", "inactive", "=", "False", ",", "completed", "=", "False", ")", ":", "services", "=", "mesos", ".", "get_master", "(", ")", ".", "frameworks", "(", "inactive", "=", "inactive", ",", "completed", "=", "complete...	27.625	19.541667
def _normalize_key(value): """Return a key from an entity, model instance, key, or key string.""" if ndb is not None and isinstance(value, (ndb.Model, ndb.Key)): return None if getattr(value, "key", None): return value.key() elif isinstance(value, basestring): return datastore.Key(value) else: ...	[ "def", "_normalize_key", "(", "value", ")", ":", "if", "ndb", "is", "not", "None", "and", "isinstance", "(", "value", ",", "(", "ndb", ".", "Model", ",", "ndb", ".", "Key", ")", ")", ":", "return", "None", "if", "getattr", "(", "value", ",", "\"key...	32.4	15.8
def _parse_interval(value): ''' Convert an interval string like 1w3d6h into the number of seconds, time resolution (1 unit of the smallest specified time unit) and the modifier( '+', '-', or ''). w = week d = day h = hour m = minute s = second ''' match = ...	[ "def", "_parse_interval", "(", "value", ")", ":", "match", "=", "_INTERVAL_REGEX", ".", "match", "(", "six", ".", "text_type", "(", "value", ")", ")", "if", "match", "is", "None", ":", "raise", "ValueError", "(", "'invalid time interval: \\'{0}\\''", ".", "f...	33.892857	20.035714
def resettable_cached_property(func): """Decorator to add cached computed properties to an object. Similar to Django's `cached_property` decorator, except stores all the data under a single well-known key so that it can easily be blown away. """ def wrapper(self): if not hasattr(self, '...	[ "def", "resettable_cached_property", "(", "func", ")", ":", "def", "wrapper", "(", "self", ")", ":", "if", "not", "hasattr", "(", "self", ",", "'_resettable_cached_properties'", ")", ":", "self", ".", "_resettable_cached_properties", "=", "{", "}", "if", "func...	43.1875	20.625
def complete(self): """ When local_workflow_require_branches of the task was set to True, returns whether the :py:meth:`run` method has been called before. Otherwise, the call is forwarded to the super class. """ if self.task.local_workflow_require_branches: ...	[ "def", "complete", "(", "self", ")", ":", "if", "self", ".", "task", ".", "local_workflow_require_branches", ":", "return", "self", ".", "_has_run", "else", ":", "return", "super", "(", "LocalWorkflowProxy", ",", "self", ")", ".", "complete", "(", ")" ]	41	23.2
def BDEVolumeOpen(bde_volume, path_spec, file_object, key_chain): """Opens the BDE volume using the path specification. Args: bde_volume (pybde.volume): BDE volume. path_spec (PathSpec): path specification. file_object (FileIO): file-like object. key_chain (KeyChain): key chain. """ password = ...	[ "def", "BDEVolumeOpen", "(", "bde_volume", ",", "path_spec", ",", "file_object", ",", "key_chain", ")", ":", "password", "=", "key_chain", ".", "GetCredential", "(", "path_spec", ",", "'password'", ")", "if", "password", ":", "bde_volume", ".", "set_password", ...	33.227273	18.318182
def TR(self,*kwargs): #pragma: no cover """ NAME: TR PURPOSE: Calculate the radial period for a power-law rotation curve INPUT: scipy.integrate.quadrature keywords OUTPUT: T_R(R,vT,vT)vc/ro + estimate of the error HISTORY: ...	[ "def", "TR", "(", "self", ",", "", "", "kwargs", ")", ":", "#pragma: no cover", "if", "hasattr", "(", "self", ",", "'_TR'", ")", ":", "return", "self", ".", "_TR", "(", "rperi", ",", "rap", ")", "=", "self", ".", "calcRapRperi", "(", "", "", ...	37.142857	16.571429
def _combine_attr_fast_update(self, attr, typ): '''Avoids having to call _update for each intermediate base. Only works for class attr of type UpdateDict. ''' values = dict(getattr(self, attr, {})) for base in self._class_data.bases: vals = dict(getattr(bas...	[ "def", "_combine_attr_fast_update", "(", "self", ",", "attr", ",", "typ", ")", ":", "values", "=", "dict", "(", "getattr", "(", "self", ",", "attr", ",", "{", "}", ")", ")", "for", "base", "in", "self", ".", "_class_data", ".", "bases", ":", "vals", ...	35.615385	15.461538
def push_notification_devices_destroy_many(self, data, **kwargs): "https://developer.zendesk.com/rest_api/docs/core/push_notification_devices#bulk-unregister-push-notification-devices" api_path = "/api/v2/push_notification_devices/destroy_many.json" return self.call(api_path, method="POST", data...	[ "def", "push_notification_devices_destroy_many", "(", "self", ",", "data", ",", "", "", "kwargs", ")", ":", "api_path", "=", "\"/api/v2/push_notification_devices/destroy_many.json\"", "return", "self", ".", "call", "(", "api_path", ",", "method", "=", "\"POST\"", ...	83.25	43.25
def compact_hdf5_file(filename, name=None, index=None, keep_backup=True): """Can compress an HDF5 to reduce file size. The properties on how to compress the new file are taken from a given trajectory in the file. Simply calls ``ptrepack`` from the command line. (Se also https://pytables.github.io/u...	[ "def", "compact_hdf5_file", "(", "filename", ",", "name", "=", "None", ",", "index", "=", "None", ",", "keep_backup", "=", "True", ")", ":", "if", "name", "is", "None", "and", "index", "is", "None", ":", "index", "=", "-", "1", "tmp_traj", "=", "load...	32.026667	22.306667
def _recv_byte(self, byte): """ Non-printable filtering currently disabled because it did not play well with extended character sets. """ ## Filter out non-printing characters #if (byte >= ' ' and byte <= '~') or byte == '\n': if self.telnet_echo: self...	[ "def", "_recv_byte", "(", "self", ",", "byte", ")", ":", "## Filter out non-printing characters", "#if (byte >= ' ' and byte <= '~') or byte == '\\n':", "if", "self", ".", "telnet_echo", ":", "self", ".", "_echo_byte", "(", "byte", ")", "self", ".", "recv_buffer", "+=...	36.1	9.9
def inner_product(vec0: QubitVector, vec1: QubitVector) -> bk.BKTensor: """ Hilbert-Schmidt inner product between qubit vectors The tensor rank and qubits must match. """ if vec0.rank != vec1.rank or vec0.qubit_nb != vec1.qubit_nb: raise ValueError('Incompatibly vectors. Qubits and rank must ma...	[ "def", "inner_product", "(", "vec0", ":", "QubitVector", ",", "vec1", ":", "QubitVector", ")", "->", "bk", ".", "BKTensor", ":", "if", "vec0", ".", "rank", "!=", "vec1", ".", "rank", "or", "vec0", ".", "qubit_nb", "!=", "vec1", ".", "qubit_nb", ":", ...	43.4	20.8
def main(self): """ Generates an output string by replacing the keywords in the format string with the corresponding values from a submission dictionary. """ self.manage_submissions() out_string = self.options['format'] # Pop until we get something which len(titl...	[ "def", "main", "(", "self", ")", ":", "self", ".", "manage_submissions", "(", ")", "out_string", "=", "self", ".", "options", "[", "'format'", "]", "# Pop until we get something which len(title) <= max-chars", "length", "=", "float", "(", "'inf'", ")", "while", ...	41.117647	19
def metadata_path(self, m_path): """Provide pointers to the paths of the metadata file Args: m_path: Path to metadata file """ if not m_path: self.metadata_dir = None self.metadata_file = None else: if not op.exists(m_path): ...	[ "def", "metadata_path", "(", "self", ",", "m_path", ")", ":", "if", "not", "m_path", ":", "self", ".", "metadata_dir", "=", "None", "self", ".", "metadata_file", "=", "None", "else", ":", "if", "not", "op", ".", "exists", "(", "m_path", ")", ":", "ra...	28.75	16.75
def parse_python(classifiers): """Parse out the versions of python supported a/c classifiers.""" prefix = 'Programming Language :: Python ::' python_classifiers = [c.split('::')[2].strip() for c in classifiers if c.startswith(prefix)] return ', '.join([c for c in python_classifiers if parse_version(c)])	[ "def", "parse_python", "(", "classifiers", ")", ":", "prefix", "=", "'Programming Language :: Python ::'", "python_classifiers", "=", "[", "c", ".", "split", "(", "'::'", ")", "[", "2", "]", ".", "strip", "(", ")", "for", "c", "in", "classifiers", "if", "c...	63.2	21.4
def ask(question, default_answer=False, default_answer_str="no"): """ Ask for user input. This asks a yes/no question with a preset default. You can bypass the user-input and fetch the default answer, if you set Args: question: The question to ask on stdout. default_answer: The...	[ "def", "ask", "(", "question", ",", "default_answer", "=", "False", ",", "default_answer_str", "=", "\"no\"", ")", ":", "response", "=", "default_answer", "def", "should_ignore_tty", "(", ")", ":", "\"\"\"\n Check, if we want to ignore an opened tty result.\n ...	32.410256	22.820513
def ask(question, default=None): """ @question: str @default: Any value which can be converted to string. Asks a user for a input. If default parameter is passed it will be appended to the end of the message in square brackets. """ question = str(question) if default: question ...	[ "def", "ask", "(", "question", ",", "default", "=", "None", ")", ":", "question", "=", "str", "(", "question", ")", "if", "default", ":", "question", "+=", "' ['", "+", "str", "(", "default", ")", "+", "']'", "question", "+=", "': '", "reply", "=", ...	25.058824	20.705882
def favorites_getList(user_id='', per_page='', page=''): """Returns list of Photo objects.""" method = 'flickr.favorites.getList' data = _doget(method, auth=True, user_id=user_id, per_page=per_page,\ page=page) photos = [] if isinstance(data.rsp.photos.photo, list): for pho...	[ "def", "favorites_getList", "(", "user_id", "=", "''", ",", "per_page", "=", "''", ",", "page", "=", "''", ")", ":", "method", "=", "'flickr.favorites.getList'", "data", "=", "_doget", "(", "method", ",", "auth", "=", "True", ",", "user_id", "=", "user_i...	38.916667	14.25
def find_clusters(network, mask=[], t_labels=False): r""" Identify connected clusters of pores in the network. This method can also return a list of throat cluster numbers, which correspond to the cluster numbers of the pores to which the throat is connected. Either site and bond percolation can b...	[ "def", "find_clusters", "(", "network", ",", "mask", "=", "[", "]", ",", "t_labels", "=", "False", ")", ":", "# Parse the input arguments", "mask", "=", "sp", ".", "array", "(", "mask", ",", "ndmin", "=", "1", ")", "if", "mask", ".", "dtype", "!=", "...	35.653061	22.857143
def plot_full(candsfile, cands, mode='im'): """ Plot 'full' features, such as cutout image and spectrum. """ loc, prop, d = read_candidates(candsfile, returnstate=True) npixx, npixy = prop[0][4].shape nints, nchan, npol = prop[0][5].shape bin = 10 plt.figure(1) for i in cands: ...	[ "def", "plot_full", "(", "candsfile", ",", "cands", ",", "mode", "=", "'im'", ")", ":", "loc", ",", "prop", ",", "d", "=", "read_candidates", "(", "candsfile", ",", "returnstate", "=", "True", ")", "npixx", ",", "npixy", "=", "prop", "[", "0", "]", ...	40.047619	23.047619
def _update_dirs_on_base(self): '''Fill up the names of dirs based on the contents of 'base'.''' if self._dirs['base'] != None: for d in self._predefined_dir_names: dstr = d #if d == "s2": # dstr = '.'+d self._dirs[d] = os.pa...	[ "def", "_update_dirs_on_base", "(", "self", ")", ":", "if", "self", ".", "_dirs", "[", "'base'", "]", "!=", "None", ":", "for", "d", "in", "self", ".", "_predefined_dir_names", ":", "dstr", "=", "d", "#if d == \"s2\":", "# dstr = '.'+d", "self", ".", "_...	43.25	14.25
def renderIndex(self, relpath="", refresh=0, refresh_index=0): """Returns HTML index code for this entry. If 'relpath' is empty, renders complete index.html file. If 'relpath' is not empty, then index is being included into a top-level log, and relpath should be passed to all sub-rendere...	[ "def", "renderIndex", "(", "self", ",", "relpath", "=", "\"\"", ",", "refresh", "=", "0", ",", "refresh_index", "=", "0", ")", ":", "# check if cache can be used", "refresh_index", "=", "max", "(", "refresh", ",", "refresh_index", ")", "dprintf", "(", "2", ...	53.583333	20.12037
def get_neighborhood_overlap(self, node1, node2, connection_type=None): """Get the intersection of two nodes's neighborhoods. Neighborhood is defined by parameter connection_type. :param Vertex node1: First node. :param Vertex node2: Second node. :param Optional[str] connection_...	[ "def", "get_neighborhood_overlap", "(", "self", ",", "node1", ",", "node2", ",", "connection_type", "=", "None", ")", ":", "if", "connection_type", "is", "None", "or", "connection_type", "==", "\"direct\"", ":", "order", "=", "1", "elif", "connection_type", "=...	43.272727	20.727273
def toMBI(self, getMemoryDump = False): """ Returns a L{win32.MemoryBasicInformation} object using the data retrieved from the database. @type getMemoryDump: bool @param getMemoryDump: (Optional) If C{True} retrieve the memory dump. Defaults to C{False} since this m...	[ "def", "toMBI", "(", "self", ",", "getMemoryDump", "=", "False", ")", ":", "mbi", "=", "win32", ".", "MemoryBasicInformation", "(", ")", "mbi", ".", "BaseAddress", "=", "self", ".", "address", "mbi", ".", "RegionSize", "=", "self", ".", "size", "mbi", ...	39.709677	13.129032
def print_tokens(output, tokens, style): """ Print a list of (Token, text) tuples in the given style to the output. """ assert isinstance(output, Output) assert isinstance(style, Style) # Reset first. output.reset_attributes() output.enable_autowrap() # Print all (token, text) tupl...	[ "def", "print_tokens", "(", "output", ",", "tokens", ",", "style", ")", ":", "assert", "isinstance", "(", "output", ",", "Output", ")", "assert", "isinstance", "(", "style", ",", "Style", ")", "# Reset first.", "output", ".", "reset_attributes", "(", ")", ...	23.888889	18.185185
def add_filename_pattern(self, dir_name, pattern): """ Adds a Unix shell-style wildcard pattern underneath the specified directory :param dir_name: str: directory that contains the pattern :param pattern: str: Unix shell-style wildcard pattern """ full_pattern = '{}{}{}'....	[ "def", "add_filename_pattern", "(", "self", ",", "dir_name", ",", "pattern", ")", ":", "full_pattern", "=", "'{}{}{}'", ".", "format", "(", "dir_name", ",", "os", ".", "sep", ",", "pattern", ")", "filename_regex", "=", "fnmatch", ".", "translate", "(", "fu...	51.222222	17.666667
def messaging(_context, repository, reset_on_start=False): """ Directive for setting up the user message resource in the appropriate repository. :param str repository: The repository to create the user messages resource in. """ discriminator = ('messaging', repository) reg = get_curre...	[ "def", "messaging", "(", "_context", ",", "repository", ",", "reset_on_start", "=", "False", ")", ":", "discriminator", "=", "(", "'messaging'", ",", "repository", ")", "reg", "=", "get_current_registry", "(", ")", "config", "=", "Configurator", "(", "reg", ...	40.666667	19.066667
def update_account(self, email=None, company_name=None, first_name=None, last_name=None, address=None, postal_code=None, city=None, state=None, country=None, phone=None): """ :: POST /:login :param email: Email address :type email: :...	[ "def", "update_account", "(", "self", ",", "email", "=", "None", ",", "company_name", "=", "None", ",", "first_name", "=", "None", ",", "last_name", "=", "None", ",", "address", "=", "None", ",", "postal_code", "=", "None", ",", "city", "=", "None", ",...	29.625	15.0625
def init_ui(self): """Setup control widget UI.""" self.control_layout = QHBoxLayout() self.setLayout(self.control_layout) self.reset_button = QPushButton() self.reset_button.setFixedSize(40, 40) self.reset_button.setIcon(QtGui.QIcon(WIN_PATH)) self.game_timer = QL...	[ "def", "init_ui", "(", "self", ")", ":", "self", ".", "control_layout", "=", "QHBoxLayout", "(", ")", "self", ".", "setLayout", "(", "self", ".", "control_layout", ")", "self", ".", "reset_button", "=", "QPushButton", "(", ")", "self", ".", "reset_button",...	43.941176	11.588235
def updateBoostStrength(self): """ Update boost strength using given strength factor during training """ if self.training: self.boostStrength = self.boostStrength * self.boostStrengthFactor	[ "def", "updateBoostStrength", "(", "self", ")", ":", "if", "self", ".", "training", ":", "self", ".", "boostStrength", "=", "self", ".", "boostStrength", "*", "self", ".", "boostStrengthFactor" ]	34.333333	15
def is_series(data): """ Checks whether the supplied data is of Series type. """ dd = None if 'dask' in sys.modules: import dask.dataframe as dd return((pd is not None and isinstance(data, pd.Series)) or (dd is not None and isinstance(data, dd.Series)))	[ "def", "is_series", "(", "data", ")", ":", "dd", "=", "None", "if", "'dask'", "in", "sys", ".", "modules", ":", "import", "dask", ".", "dataframe", "as", "dd", "return", "(", "(", "pd", "is", "not", "None", "and", "isinstance", "(", "data", ",", "p...	31.888889	13.222222
def frombed(args): """ %prog frombed bed_file [--options] > gff_file Convert bed to gff file. In bed, the accn will convert to key='ID' Default type will be `match` and default source will be `source` """ p = OptionParser(frombed.__doc__) p.add_option("--type", default="match", ...	[ "def", "frombed", "(", "args", ")", ":", "p", "=", "OptionParser", "(", "frombed", ".", "__doc__", ")", "p", ".", "add_option", "(", "\"--type\"", ",", "default", "=", "\"match\"", ",", "help", "=", "\"GFF feature type [default: %default]\"", ")", "p", ".", ...	31	18.909091
def _GetDirectory(self): """Retrieves a directory. Returns: TSKPartitionDirectory: a directory or None if not available. """ if self.entry_type != definitions.FILE_ENTRY_TYPE_DIRECTORY: return None return TSKPartitionDirectory(self._file_system, self.path_spec)	[ "def", "_GetDirectory", "(", "self", ")", ":", "if", "self", ".", "entry_type", "!=", "definitions", ".", "FILE_ENTRY_TYPE_DIRECTORY", ":", "return", "None", "return", "TSKPartitionDirectory", "(", "self", ".", "_file_system", ",", "self", ".", "path_spec", ")" ...	31.777778	20.444444
def stop_process(self): """Request the module process to stop and release it :return: None """ if not self.process: return logger.info("I'm stopping module %r (pid=%d)", self.name, self.process.pid) self.kill() # Clean inner process reference ...	[ "def", "stop_process", "(", "self", ")", ":", "if", "not", "self", ".", "process", ":", "return", "logger", ".", "info", "(", "\"I'm stopping module %r (pid=%d)\"", ",", "self", ".", "name", ",", "self", ".", "process", ".", "pid", ")", "self", ".", "kil...	27.416667	19
def can_create_activities(self): """Tests if this user can create Activities. A return of true does not guarantee successful authorization. A return of false indicates that it is known creating an Activity will result in a PermissionDenied. This is intended as a hint to an applic...	[ "def", "can_create_activities", "(", "self", ")", ":", "url_path", "=", "construct_url", "(", "'authorization'", ",", "bank_id", "=", "self", ".", "_catalog_idstr", ")", "return", "self", ".", "_get_request", "(", "url_path", ")", "[", "'activityHints'", "]", ...	50.4	19.4
def authenticate_credentials(self, token: bytes, request=None): """ Authenticate the token with optional request for context. """ user = AuthToken.get_user_for_token(token) if user is None: raise AuthenticationFailed(_('Invalid auth token.')) if not user.is_...	[ "def", "authenticate_credentials", "(", "self", ",", "token", ":", "bytes", ",", "request", "=", "None", ")", ":", "user", "=", "AuthToken", ".", "get_user_for_token", "(", "token", ")", "if", "user", "is", "None", ":", "raise", "AuthenticationFailed", "(", ...	31.846154	20.923077
def release(self, device_info): """This function is called by the segmentation state machine when it has finished with the device information.""" if _debug: DeviceInfoCache._debug("release %r", device_info) # this information record might be used by more than one SSM if device_i...	[ "def", "release", "(", "self", ",", "device_info", ")", ":", "if", "_debug", ":", "DeviceInfoCache", ".", "_debug", "(", "\"release %r\"", ",", "device_info", ")", "# this information record might be used by more than one SSM", "if", "device_info", ".", "_ref_count", ...	41.545455	14.636364
def skip_regex(lines, options): """ Optionally exclude lines that match '--skip-requirements-regex' """ skip_regex = options.skip_requirements_regex if options else None if skip_regex: lines = filterfalse(re.compile(skip_regex).search, lines) return lines	[ "def", "skip_regex", "(", "lines", ",", "options", ")", ":", "skip_regex", "=", "options", ".", "skip_requirements_regex", "if", "options", "else", "None", "if", "skip_regex", ":", "lines", "=", "filterfalse", "(", "re", ".", "compile", "(", "skip_regex", ")...	35	17
def _infer_type(value, element_kind, element_name): """ Infer the CIM type name of the value, based upon its Python type. """ if value is None: raise ValueError( _format("Cannot infer CIM type of {0} {1!A} from its value when " "the value is None", element_kind, ...	[ "def", "_infer_type", "(", "value", ",", "element_kind", ",", "element_name", ")", ":", "if", "value", "is", "None", ":", "raise", "ValueError", "(", "_format", "(", "\"Cannot infer CIM type of {0} {1!A} from its value when \"", "\"the value is None\"", ",", "element_ki...	34.25	21.375
def prepare_sequencemanager(self) -> None: """Configure the \|SequenceManager\| object available in module \|pub\| following the definitions of the actual XML `reader` or `writer` element when available; if not use those of the XML `series_io` element. Compare the following results ...	[ "def", "prepare_sequencemanager", "(", "self", ")", "->", "None", ":", "for", "config", ",", "convert", "in", "(", "(", "'filetype'", ",", "lambda", "x", ":", "x", ")", ",", "(", "'aggregation'", ",", "lambda", "x", ":", "x", ")", ",", "(", "'overwri...	41.246377	15.942029
def __get_substitution_paths(g): """ get atoms paths from detached atom to attached :param g: CGRContainer :return: tuple of atoms numbers """ for n, nbrdict in g.adjacency(): for m, l in combinations(nbrdict, 2): nms = nbrdict[m]['sp_bond'] ...	[ "def", "__get_substitution_paths", "(", "g", ")", ":", "for", "n", ",", "nbrdict", "in", "g", ".", "adjacency", "(", ")", ":", "for", "m", ",", "l", "in", "combinations", "(", "nbrdict", ",", "2", ")", ":", "nms", "=", "nbrdict", "[", "m", "]", "...	35.6	9.2
def launch_tor(config, reactor, tor_binary=None, progress_updates=None, connection_creator=None, timeout=None, kill_on_stderr=True, stdout=None, stderr=None): """ Deprecated; use launch() instead. See also controller....	[ "def", "launch_tor", "(", "config", ",", "reactor", ",", "tor_binary", "=", "None", ",", "progress_updates", "=", "None", ",", "connection_creator", "=", "None", ",", "timeout", "=", "None", ",", "kill_on_stderr", "=", "True", ",", "stdout", "=", "None", "...	31	12
def isomap(geom, n_components=8, eigen_solver='auto', random_state=None, path_method='auto', distance_matrix=None, graph_distance_matrix = None, centered_matrix=None, solver_kwds=None): """ Parameters ---------- geom : a Geometry object from megaman.geometry.geometry ...	[ "def", "isomap", "(", "geom", ",", "n_components", "=", "8", ",", "eigen_solver", "=", "'auto'", ",", "random_state", "=", "None", ",", "path_method", "=", "'auto'", ",", "distance_matrix", "=", "None", ",", "graph_distance_matrix", "=", "None", ",", "center...	48.180723	25.048193
def _create_parser() -> ArgumentParser: """ Creates argument parser for the CLI. :return: the argument parser """ parser = ArgumentParser(prog=EXECUTABLE_NAME, description=f"{DESCRIPTION} (v{VERSION})") parser.add_argument( f"-{VERBOSE_SHORT_PARAMETER}", action="count", default=0, ...	[ "def", "_create_parser", "(", ")", "->", "ArgumentParser", ":", "parser", "=", "ArgumentParser", "(", "prog", "=", "EXECUTABLE_NAME", ",", "description", "=", "f\"{DESCRIPTION} (v{VERSION})\"", ")", "parser", ".", "add_argument", "(", "f\"-{VERBOSE_SHORT_PARAMETER}\"", ...	62.928571	37.178571
def _first_glimpse_sensor(self, x_t): """ Compute first glimpse position using down-sampled image. """ downsampled_img = theano.tensor.signal.downsample.max_pool_2d(x_t, (4,4)) downsampled_img = downsampled_img.flatten() first_l = T.dot(downsampled_img, self.W_f) ...	[ "def", "_first_glimpse_sensor", "(", "self", ",", "x_t", ")", ":", "downsampled_img", "=", "theano", ".", "tensor", ".", "signal", ".", "downsample", ".", "max_pool_2d", "(", "x_t", ",", "(", "4", ",", "4", ")", ")", "downsampled_img", "=", "downsampled_im...	45	16.294118
def multipart_listuploads(self, bucket): """List objects in a bucket. :param bucket: A :class:`invenio_files_rest.models.Bucket` instance. :returns: The Flask response. """ return self.make_response( data=MultipartObject.query_by_bucket(bucket).limit(1000).all(), ...	[ "def", "multipart_listuploads", "(", "self", ",", "bucket", ")", ":", "return", "self", ".", "make_response", "(", "data", "=", "MultipartObject", ".", "query_by_bucket", "(", "bucket", ")", ".", "limit", "(", "1000", ")", ".", "all", "(", ")", ",", "con...	32.5	15.428571
def text(self, encoding=None, errors='strict'): r""" Open this file, read it in, return the content as a string. This uses 'U' mode in Python 2.3 and later, so '\r\n' and '\r' are automatically translated to '\n'. Optional arguments: encoding - The Unicode encoding (or charact...	[ "def", "text", "(", "self", ",", "encoding", "=", "None", ",", "errors", "=", "'strict'", ")", ":", "if", "encoding", "is", "None", ":", "# 8-bit", "f", "=", "self", ".", "open", "(", "_textmode", ")", "try", ":", "return", "f", ".", "read", "(", ...	36.75	16.388889
def popdict(src, keys): """ Extract all keys (with values) from `src` dictionary as new dictionary values are removed from source dictionary. """ new = {} for key in keys: if key in src: new[key] = src.pop(key) return new	[ "def", "popdict", "(", "src", ",", "keys", ")", ":", "new", "=", "{", "}", "for", "key", "in", "keys", ":", "if", "key", "in", "src", ":", "new", "[", "key", "]", "=", "src", ".", "pop", "(", "key", ")", "return", "new" ]	23.636364	17.636364
def string_to_list(string, sep=",", filter_empty=False): """Transforma una string con elementos separados por `sep` en una lista.""" return [value.strip() for value in string.split(sep) if (not filter_empty or value)]	[ "def", "string_to_list", "(", "string", ",", "sep", "=", "\",\"", ",", "filter_empty", "=", "False", ")", ":", "return", "[", "value", ".", "strip", "(", ")", "for", "value", "in", "string", ".", "split", "(", "sep", ")", "if", "(", "not", "filter_em...	58.5	8.75
def list_services(kwargs=None, conn=None, call=None): ''' .. versionadded:: 2015.8.0 List hosted services associated with the account CLI Example: .. code-block:: bash salt-cloud -f list_services my-azure ''' if call != 'function': raise SaltCloudSystemExit( '...	[ "def", "list_services", "(", "kwargs", "=", "None", ",", "conn", "=", "None", ",", "call", "=", "None", ")", ":", "if", "call", "!=", "'function'", ":", "raise", "SaltCloudSystemExit", "(", "'The list_services function must be called with -f or --function.'", ")", ...	24.346154	23.192308
def render_toolbar(context, config): """Render the toolbar for the given config.""" quill_config = getattr(quill_app, config) t = template.loader.get_template(quill_config['toolbar_template']) return t.render(context)	[ "def", "render_toolbar", "(", "context", ",", "config", ")", ":", "quill_config", "=", "getattr", "(", "quill_app", ",", "config", ")", "t", "=", "template", ".", "loader", ".", "get_template", "(", "quill_config", "[", "'toolbar_template'", "]", ")", "retur...	45.8	10.2
def gaussian(x, y, xsigma, ysigma): """ Two-dimensional oriented Gaussian pattern (i.e., 2D version of a bell curve, like a normal distribution but not necessarily summing to 1.0). """ if xsigma==0.0 or ysigma==0.0: return x*0.0 with float_error_ignore(): x_w = np.divide(x,x...	[ "def", "gaussian", "(", "x", ",", "y", ",", "xsigma", ",", "ysigma", ")", ":", "if", "xsigma", "==", "0.0", "or", "ysigma", "==", "0.0", ":", "return", "x", "*", "0.0", "with", "float_error_ignore", "(", ")", ":", "x_w", "=", "np", ".", "divide", ...	30.692308	14.692308
def check_api_error(api_response): print(api_response) """Check if returned API response contains an error.""" if type(api_response) == dict and 'code' in api_response and api_response['code'] <> 200: print("Server response code: %s" % api_response['code']) print("Server response: %s...	[ "def", "check_api_error", "(", "api_response", ")", ":", "print", "(", "api_response", ")", "if", "type", "(", "api_response", ")", "==", "dict", "and", "'code'", "in", "api_response", "and", "api_response", "[", "'code'", "]", "<>", "200", ":", "print", "...	58.875	22.25
def mass_2d(self, r, rho0, Rs): """ mass enclosed projected 2d sphere of radius r :param r: :param rho0: :param a: :param s: :return: """ sigma0 = self.rho2sigma(rho0, Rs) return self.mass_2d_lens(r, sigma0, Rs)	[ "def", "mass_2d", "(", "self", ",", "r", ",", "rho0", ",", "Rs", ")", ":", "sigma0", "=", "self", ".", "rho2sigma", "(", "rho0", ",", "Rs", ")", "return", "self", ".", "mass_2d_lens", "(", "r", ",", "sigma0", ",", "Rs", ")" ]	23.416667	15.25
def _make_expand_x_fn_for_non_batch_interpolation(y_ref, axis): """Make func to expand left/right (of axis) dims of tensors shaped like x.""" # This expansion is to help x broadcast with `y`, the output. # In the non-batch case, the output shape is going to be # y_ref.shape[:axis] + x.shape + y_ref.shape[axis...	[ "def", "_make_expand_x_fn_for_non_batch_interpolation", "(", "y_ref", ",", "axis", ")", ":", "# This expansion is to help x broadcast with `y`, the output.", "# In the non-batch case, the output shape is going to be", "# y_ref.shape[:axis] + x.shape + y_ref.shape[axis+1:]", "# Recall we made...	35.942857	16.714286
def find_executable(executable): ''' Finds executable in PATH Returns: string or None ''' logger = logging.getLogger(__name__) logger.debug("Checking executable '%s'...", executable) executable_path = _find_executable(executable) found = executable_path is not None if found:...	[ "def", "find_executable", "(", "executable", ")", ":", "logger", "=", "logging", ".", "getLogger", "(", "__name__", ")", "logger", ".", "debug", "(", "\"Checking executable '%s'...\"", ",", "executable", ")", "executable_path", "=", "_find_executable", "(", "execu...	30.3125	20.9375
def _get_render_prepared_object(cls, context, **option_values): """ Returns a fully prepared, request-aware menu object that can be used for rendering. ``context`` could be a ``django.template.Context`` object passed to ``render_from_tag()`` by a menu tag. """ ctx_vals = ...	[ "def", "_get_render_prepared_object", "(", "cls", ",", "context", ",", "", "", "option_values", ")", ":", "ctx_vals", "=", "cls", ".", "_create_contextualvals_obj_from_context", "(", "context", ")", "opt_vals", "=", "cls", ".", "_create_optionvals_obj_from_values", ...	43.611111	24.277778
def sort(self): """Sort by detection time. .. rubric:: Example >>> family = Family( ... template=Template(name='a'), detections=[ ... Detection(template_name='a', detect_time=UTCDateTime(0) + 200, ... no_chans=8, detect_val=4.2, threshold=1.2, ...	[ "def", "sort", "(", "self", ")", ":", "self", ".", "detections", "=", "sorted", "(", "self", ".", "detections", ",", "key", "=", "lambda", "d", ":", "d", ".", "detect_time", ")", "return", "self" ]	45.692308	19.423077
def validate_ok_for_update(update): """Validate an update document.""" validate_is_mapping("update", update) # Update can not be {} if not update: raise ValueError('update only works with $ operators') first = next(iter(update)) if not first.startswith('$'): raise ValueError('upd...	[ "def", "validate_ok_for_update", "(", "update", ")", ":", "validate_is_mapping", "(", "\"update\"", ",", "update", ")", "# Update can not be {}", "if", "not", "update", ":", "raise", "ValueError", "(", "'update only works with $ operators'", ")", "first", "=", "next",...	38.333333	11.444444
def register_user_type(self, keyspace, user_type, klass): """ Registers a class to use to represent a particular user-defined type. Query parameters for this user-defined type will be assumed to be instances of `klass`. Result sets for this user-defined type will be instances of...	[ "def", "register_user_type", "(", "self", ",", "keyspace", ",", "user_type", ",", "klass", ")", ":", "if", "self", ".", "protocol_version", "<", "3", ":", "log", ".", "warning", "(", "\"User Type serialization is only supported in native protocol version 3+ (%d in use)....	44.912281	27.263158
def Tags(self): """Return all tags found in the value stream. Returns: A `{tagType: ['list', 'of', 'tags']}` dictionary. """ return { IMAGES: self.images.Keys(), AUDIO: self.audios.Keys(), HISTOGRAMS: self.histograms.Keys(), SCALARS: self.scalars.Keys(), CO...	[ "def", "Tags", "(", "self", ")", ":", "return", "{", "IMAGES", ":", "self", ".", "images", ".", "Keys", "(", ")", ",", "AUDIO", ":", "self", ".", "audios", ".", "Keys", "(", ")", ",", "HISTOGRAMS", ":", "self", ".", "histograms", ".", "Keys", "("...	35.947368	15.526316
def daytime(date: datetime.date, daybreak: datetime.time = datetime.time(NORMAL_DAY_START_H), nightfall: datetime.time = datetime.time(NORMAL_DAY_END_H)) \ -> "Interval": """ Returns an :class:`Interval` representing daytime on the date given. """ ...	[ "def", "daytime", "(", "date", ":", "datetime", ".", "date", ",", "daybreak", ":", "datetime", ".", "time", "=", "datetime", ".", "time", "(", "NORMAL_DAY_START_H", ")", ",", "nightfall", ":", "datetime", ".", "time", "=", "datetime", ".", "time", "(", ...	41	18.818182
def load_data(self): """ Loads data files and stores the output in the data attribute. """ data = [] valid_dates = [] mrms_files = np.array(sorted(os.listdir(self.path + self.variable + "/"))) mrms_file_dates = np.array([m_file.split("_")[-2].split("-")[0] ...	[ "def", "load_data", "(", "self", ")", ":", "data", "=", "[", "]", "valid_dates", "=", "[", "]", "mrms_files", "=", "np", ".", "array", "(", "sorted", "(", "os", ".", "listdir", "(", "self", ".", "path", "+", "self", ".", "variable", "+", "\"/\"", ...	47.102564	17.820513
def once(ctx, name): """Run kibitzr checks once and exit""" from kibitzr.app import Application app = Application() sys.exit(app.run(once=True, log_level=ctx.obj['log_level'], names=name))	[ "def", "once", "(", "ctx", ",", "name", ")", ":", "from", "kibitzr", ".", "app", "import", "Application", "app", "=", "Application", "(", ")", "sys", ".", "exit", "(", "app", ".", "run", "(", "once", "=", "True", ",", "log_level", "=", "ctx", ".", ...	40	14.8
def stop_notifying(cls, user_or_email, instance): """Delete the watch created by notify.""" super(InstanceEvent, cls).stop_notifying(user_or_email, object_id=instance.pk)	[ "def", "stop_notifying", "(", "cls", ",", "user_or_email", ",", "instance", ")", ":", "super", "(", "InstanceEvent", ",", "cls", ")", ".", "stop_notifying", "(", "user_or_email", ",", "object_id", "=", "instance", ".", "pk", ")" ]	58	15.75
def restore_from_checkpoint(sess, input_checkpoint): """Return a TensorFlow saver from a checkpoint containing the metagraph.""" saver = tf.train.import_meta_graph('{}.meta'.format(input_checkpoint)) saver.restore(sess, input_checkpoint) return saver	[ "def", "restore_from_checkpoint", "(", "sess", ",", "input_checkpoint", ")", ":", "saver", "=", "tf", ".", "train", ".", "import_meta_graph", "(", "'{}.meta'", ".", "format", "(", "input_checkpoint", ")", ")", "saver", ".", "restore", "(", "sess", ",", "inpu...	52.4	14.2
def remnant_mass_ulim(eta, ns_g_mass, bh_spin_z, ns_sequence, max_ns_g_mass, shift): """ Function that determines the maximum remnant disk mass for an NS-BH system with given symmetric mass ratio, NS mass, and BH spin parameter component along the orbital angular momentum. This is a wrapper to ...	[ "def", "remnant_mass_ulim", "(", "eta", ",", "ns_g_mass", ",", "bh_spin_z", ",", "ns_sequence", ",", "max_ns_g_mass", ",", "shift", ")", ":", "# Sanity checks", "if", "not", "(", "eta", ">", "0.", "and", "eta", "<=", "0.25", "and", "abs", "(", "bh_spin_z",...	43.54902	20
def XYZ_to_galcencyl(X,Y,Z,Xsun=1.,Zsun=0.,_extra_rot=True): """ NAME: XYZ_to_galcencyl PURPOSE: transform XYZ coordinates (wrt Sun) to cylindrical Galactocentric coordinates INPUT: X - X Y - Y Z - Z Xsun - cylindrical distance to the GC Z...	[ "def", "XYZ_to_galcencyl", "(", "X", ",", "Y", ",", "Z", ",", "Xsun", "=", "1.", ",", "Zsun", "=", "0.", ",", "_extra_rot", "=", "True", ")", ":", "XYZ", "=", "nu", ".", "atleast_2d", "(", "XYZ_to_galcenrect", "(", "X", ",", "Y", ",", "Z", ",", ...	20.833333	30.777778
def parse_input(s): """Parse the given input and intelligently transform it into an absolute, non-naive, timezone-aware datetime object for the UTC timezone. The input can be specified as a millisecond-precision UTC timestamp (or delta against Epoch), with or without a terminating 'L'. Alternatively, t...	[ "def", "parse_input", "(", "s", ")", ":", "if", "isinstance", "(", "s", ",", "six", ".", "integer_types", ")", ":", "s", "=", "str", "(", "s", ")", "elif", "not", "isinstance", "(", "s", ",", "six", ".", "string_types", ")", ":", "raise", "ValueErr...	33.463415	21.829268
def exec_commands(commands: str, **parameters: Any) -> None: """Execute the given Python commands. Function \|exec_commands\| is thought for testing purposes only (see the main documentation on module \|hyd\|). Seperate individual commands by semicolons and replaced whitespaces with underscores: >>> ...	[ "def", "exec_commands", "(", "commands", ":", "str", ",", "", "", "parameters", ":", "Any", ")", "->", "None", ":", "cmdlist", "=", "commands", ".", "split", "(", "';'", ")", "print", "(", "f'Start to execute the commands {cmdlist} for testing purposes.'", ")"...	37.916667	22.416667
def enable_enhanced_monitoring(stream_name, metrics, region=None, key=None, keyid=None, profile=None): ''' Enable enhanced monitoring for the specified shard-level metrics on stream stream_name CLI example:: salt myminion boto_kinesis.enable_enhanced_monitoring my_st...	[ "def", "enable_enhanced_monitoring", "(", "stream_name", ",", "metrics", ",", "region", "=", "None", ",", "key", "=", "None", ",", "keyid", "=", "None", ",", "profile", "=", "None", ")", ":", "conn", "=", "_get_conn", "(", "region", "=", "region", ",", ...	39.333333	29.555556
def SetGaugeCallback(self, metric_name, callback, fields=None): """See base class.""" self._gauge_metrics[metric_name].SetCallback(callback, fields)	[ "def", "SetGaugeCallback", "(", "self", ",", "metric_name", ",", "callback", ",", "fields", "=", "None", ")", ":", "self", ".", "_gauge_metrics", "[", "metric_name", "]", ".", "SetCallback", "(", "callback", ",", "fields", ")" ]	51.333333	16.333333
def to_delete(datetimes, years=0, months=0, weeks=0, days=0, hours=0, minutes=0, seconds=0, firstweekday=SATURDAY, now=None): """ Return a set of datetimes that should be deleted, out of ``datetimes``. See ``to_keep`` for a description of arguments. """ dat...	[ "def", "to_delete", "(", "datetimes", ",", "years", "=", "0", ",", "months", "=", "0", ",", "weeks", "=", "0", ",", "days", "=", "0", ",", "hours", "=", "0", ",", "minutes", "=", "0", ",", "seconds", "=", "0", ",", "firstweekday", "=", "SATURDAY"...	42	15.2
def update(self, friendly_name=values.unset, attributes=values.unset, date_created=values.unset, date_updated=values.unset, created_by=values.unset): """ Update the SessionInstance :param unicode friendly_name: The human-readable name of this session. :para...	[ "def", "update", "(", "self", ",", "friendly_name", "=", "values", ".", "unset", ",", "attributes", "=", "values", ".", "unset", ",", "date_created", "=", "values", ".", "unset", ",", "date_updated", "=", "values", ".", "unset", ",", "created_by", "=", "...	44.590909	19.863636
def get_default_config(self): """ Returns the default collector settings """ config = super(IPVSCollector, self).get_default_config() config.update({ 'bin': '/usr/sbin/ipvsadm', 'use_sudo': True, 'sudo_cmd': '/usr/b...	[ "def", "get_default_config", "(", "self", ")", ":", "config", "=", "super", "(", "IPVSCollector", ",", "self", ")", ".", "get_default_config", "(", ")", "config", ".", "update", "(", "{", "'bin'", ":", "'/usr/sbin/ipvsadm'", ",", "'use_sudo'", ":", "True", ...	32.5	11
def description_of(file, name='stdin'): """Return a string describing the probable encoding of a file.""" u = UniversalDetector() for line in file: u.feed(line) u.close() result = u.result if result['encoding']: return '%s: %s with confidence %s' % (name, ...	[ "def", "description_of", "(", "file", ",", "name", "=", "'stdin'", ")", ":", "u", "=", "UniversalDetector", "(", ")", "for", "line", "in", "file", ":", "u", ".", "feed", "(", "line", ")", "u", ".", "close", "(", ")", "result", "=", "u", ".", "res...	35.769231	16.153846

def show(only_path=False): """Show the current config.""" logger.setLevel(logging.INFO) infos = ["\n", f'Instance path: "{current_app.instance_path}"'] logger.info("\n ".join(infos)) if not only_path: log_config(current_app.config)

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def find_numeration(docbody, title): """Find numeration pattern 1st try to find numeration in the title e.g. References [4] Riotto... 2nd find the numeration alone in the line after the title e.g. References 1 Riotto 3rnd find the numeration in the following line e.g. ...

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def _find_links(k_vec, sfx, rsfx, k): """Find sfx/rsfx recursively.""" k_vec.sort() if 0 in k_vec: return k_vec else: if sfx[k] not in k_vec: k_vec.append(sfx[k]) for i in range(len(rsfx[k])): if rsfx[k][i] not in k_vec: k_vec.append(rsfx[k...

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def check_file_for_tabs(filename, verbose=True): """identifies if the file contains tabs and returns True if it does. It also prints the location of the lines and columns. If verbose is set to False, the location is not printed. :param verbose: if true prints information about issues :param filenam...

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def generateLatticeFile(self, beamline, filename=None, format='elegant'): """ generate simulation files for lattice analysis, e.g. ".lte" for elegant, ".madx" for madx input parameters: :param beamline: keyword for beamline :param filename: name of lte/mad file, ...

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def step_it_should_fail_with(context): ''' EXAMPLE: ... when I run "behave ..." then it should fail with: """ TEXT """ ''' assert context.text is not None, "ENSURE: multiline text is provided." step_command_output_should_contain(context) ...

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def teardown(file): # pylint:disable=redefined-builtin """Teardown a polyaxon deployment given a config file.""" config = read_deployment_config(file) manager = DeployManager(config=config, filepath=file) exception = None try: if click.confirm('Would you like to execute pre-delete hooks?', ...

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def _GetUnsortedNotifications(self, queue_shard, notifications_by_session_id=None): """Returns all the available notifications for a queue_shard. Args: queue_shard: urn of queue shard notifications_by_session_id: store notifications in...

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def iterSourceCode(paths): """ Iterate over all Python source files in C{paths}. @param paths: A list of paths. Directories will be recursed into and any .py files found will be yielded. Any non-directories will be yielded as-is. """ for path in paths: if os.path.isdir(pat...

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def get_golden_topics(self, lang): """Return the topics mastered ("golden") by a user in a language.""" return [topic['title'] for topic in self.user_data.language_data[lang]['skills'] if topic['learned'] and topic['strength'] == 1.0]

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def _check_pong(self): """Checks if a Pong message was received. :return: """ self.pong_timer.cancel() if self.pong_received: self.log.debug("_check_pong(): Pong received in time.") self.pong_received = False else: # reconnect ...

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def ParseFileObject(self, parser_mediator, file_object): """Parses a Java WebStart Cache IDX file-like object. Args: parser_mediator (ParserMediator): mediates interactions between parsers and other components, such as storage and dfvfs. file_object (dvfvs.FileIO): a file-like object to p...

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def setCredentialValues(self, username=None, password=None, public_key=None, private_key=None, new=False): """Set the values in disk.0.os.credentials.*.""" credentials_base = "disk.0.os.credentials." if new: credentials_base = "disk.0.os.credentials.new." if username: ...

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def split_elements(value): """Split a string with comma or space-separated elements into a list.""" l = [v.strip() for v in value.split(',')] if len(l) == 1: l = value.split() return l

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def delete(self): """ Deletes the space """ return self._client._delete( self.__class__.base_url( self.sys['id'] ) )

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def config_control(inherit_napalm_device=None, **kwargs): # pylint: disable=unused-argument ''' Will check if the configuration was changed. If differences found, will try to commit. In case commit unsuccessful, will try to rollback. :return: A tuple with a boolean that specifies if the config wa...

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def exit_after(s): """ Use as decorator to exit process if function takes longer than s seconds. Direct call is available via exit_after(TIMEOUT_IN_S)(fce)(args). Inspired by https://stackoverflow.com/a/31667005 """ def outer(fn): def inner(*args, **kwargs): timer = th...

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def gene_by_protein_id(self, protein_id): """ Get the gene ID associated with the given protein ID, return its Gene object """ gene_id = self.gene_id_of_protein_id(protein_id) return self.gene_by_id(gene_id)

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35.571429

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def _generate_features(self, feature_extractors): """Run all FeatureExtractors and record results in a key-value format. :param feature_extractors: iterable of `FeatureExtractor` objects. """ results = [pd.DataFrame()] n_ext = len(feature_extractors) for i, extractor in...

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def duplicate(self): ''' Returns a copy of the current group, including its lines. @returns: Group ''' return self.__class__(amount=self.amount, date=self.date, method=self.method, ref=self.ref)

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36.857143

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def _concat_datetime(to_concat, axis=0, typs=None): """ provide concatenation of an datetimelike array of arrays each of which is a single M8[ns], datetimet64[ns, tz] or m8[ns] dtype Parameters ---------- to_concat : array of arrays axis : axis to provide concatenation typs : set of to_...

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32.177778

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def task_loop(tasks, execute, wait=None, store=TaskStore()): """ The inner task loop for a task runner. execute: A function that runs a task. It should take a task as its sole argument, and may optionally return a TaskResult. wait: (optional, None) A function to run whenever there aren't any ...

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32.59375

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def get(self, q, limit=None): """ Performs a search against the predict endpoint :param q: query to be searched for [STRING] :return: { score: [0|1] } """ uri = '{}/predict?q={}'.format(self.client.remote, q) self.logger.debug(uri) body = self.client.get...

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28.583333

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def pipeline(self): """Returns :class:`Pipeline` object to execute bulk of commands. It is provided for convenience. Commands can be pipelined without it. Example: >>> pipe = redis.pipeline() >>> fut1 = pipe.incr('foo') # NO `await` as it will block forever! >>...

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32.307692

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def get_service( service_name, inactive=False, completed=False ): """ Get a dictionary describing a service :param service_name: the service name :type service_name: str :param inactive: whether to include inactive services :type inactive: bool :param ...

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27.625

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def _normalize_key(value): """Return a key from an entity, model instance, key, or key string.""" if ndb is not None and isinstance(value, (ndb.Model, ndb.Key)): return None if getattr(value, "key", None): return value.key() elif isinstance(value, basestring): return datastore.Key(value) else: ...

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32.4

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def _parse_interval(value): ''' Convert an interval string like 1w3d6h into the number of seconds, time resolution (1 unit of the smallest specified time unit) and the modifier( '+', '-', or ''). w = week d = day h = hour m = minute s = second ''' match = ...

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33.892857

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def resettable_cached_property(func): """Decorator to add cached computed properties to an object. Similar to Django's `cached_property` decorator, except stores all the data under a single well-known key so that it can easily be blown away. """ def wrapper(self): if not hasattr(self, '...

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20.625

def complete(self): """ When *local_workflow_require_branches* of the task was set to *True*, returns whether the :py:meth:`run` method has been called before. Otherwise, the call is forwarded to the super class. """ if self.task.local_workflow_require_branches: ...

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41

23.2

def BDEVolumeOpen(bde_volume, path_spec, file_object, key_chain): """Opens the BDE volume using the path specification. Args: bde_volume (pybde.volume): BDE volume. path_spec (PathSpec): path specification. file_object (FileIO): file-like object. key_chain (KeyChain): key chain. """ password = ...

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33.227273

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def TR(self,**kwargs): #pragma: no cover """ NAME: TR PURPOSE: Calculate the radial period for a power-law rotation curve INPUT: scipy.integrate.quadrature keywords OUTPUT: T_R(R,vT,vT)*vc/ro + estimate of the error HISTORY: ...

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37.142857

16.571429

def _combine_attr_fast_update(self, attr, typ): '''Avoids having to call _update for each intermediate base. Only works for class attr of type UpdateDict. ''' values = dict(getattr(self, attr, {})) for base in self._class_data.bases: vals = dict(getattr(bas...

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35.615385

15.461538

def push_notification_devices_destroy_many(self, data, **kwargs): "https://developer.zendesk.com/rest_api/docs/core/push_notification_devices#bulk-unregister-push-notification-devices" api_path = "/api/v2/push_notification_devices/destroy_many.json" return self.call(api_path, method="POST", data...

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83.25

43.25

def compact_hdf5_file(filename, name=None, index=None, keep_backup=True): """Can compress an HDF5 to reduce file size. The properties on how to compress the new file are taken from a given trajectory in the file. Simply calls ``ptrepack`` from the command line. (Se also https://pytables.github.io/u...

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32.026667

22.306667

def _recv_byte(self, byte): """ Non-printable filtering currently disabled because it did not play well with extended character sets. """ ## Filter out non-printing characters #if (byte >= ' ' and byte <= '~') or byte == '\n': if self.telnet_echo: self...

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36.1

9.9

def inner_product(vec0: QubitVector, vec1: QubitVector) -> bk.BKTensor: """ Hilbert-Schmidt inner product between qubit vectors The tensor rank and qubits must match. """ if vec0.rank != vec1.rank or vec0.qubit_nb != vec1.qubit_nb: raise ValueError('Incompatibly vectors. Qubits and rank must ma...

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43.4

20.8

def main(self): """ Generates an output string by replacing the keywords in the format string with the corresponding values from a submission dictionary. """ self.manage_submissions() out_string = self.options['format'] # Pop until we get something which len(titl...

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41.117647

19

def metadata_path(self, m_path): """Provide pointers to the paths of the metadata file Args: m_path: Path to metadata file """ if not m_path: self.metadata_dir = None self.metadata_file = None else: if not op.exists(m_path): ...

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28.75

16.75

def parse_python(classifiers): """Parse out the versions of python supported a/c classifiers.""" prefix = 'Programming Language :: Python ::' python_classifiers = [c.split('::')[2].strip() for c in classifiers if c.startswith(prefix)] return ', '.join([c for c in python_classifiers if parse_version(c)])

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63.2

21.4

def ask(question, default_answer=False, default_answer_str="no"): """ Ask for user input. This asks a yes/no question with a preset default. You can bypass the user-input and fetch the default answer, if you set Args: question: The question to ask on stdout. default_answer: The...

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32.410256

22.820513

def ask(question, default=None): """ @question: str @default: Any value which can be converted to string. Asks a user for a input. If default parameter is passed it will be appended to the end of the message in square brackets. """ question = str(question) if default: question ...

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25.058824

20.705882

def favorites_getList(user_id='', per_page='', page=''): """Returns list of Photo objects.""" method = 'flickr.favorites.getList' data = _doget(method, auth=True, user_id=user_id, per_page=per_page,\ page=page) photos = [] if isinstance(data.rsp.photos.photo, list): for pho...

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38.916667

14.25

def find_clusters(network, mask=[], t_labels=False): r""" Identify connected clusters of pores in the network. This method can also return a list of throat cluster numbers, which correspond to the cluster numbers of the pores to which the throat is connected. Either site and bond percolation can b...

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35.653061

22.857143

def plot_full(candsfile, cands, mode='im'): """ Plot 'full' features, such as cutout image and spectrum. """ loc, prop, d = read_candidates(candsfile, returnstate=True) npixx, npixy = prop[0][4].shape nints, nchan, npol = prop[0][5].shape bin = 10 plt.figure(1) for i in cands: ...

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40.047619

23.047619

def _update_dirs_on_base(self): '''Fill up the names of dirs based on the contents of 'base'.''' if self._dirs['base'] != None: for d in self._predefined_dir_names: dstr = d #if d == "s2": # dstr = '.'+d self._dirs[d] = os.pa...

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43.25

14.25

def renderIndex(self, relpath="", refresh=0, refresh_index=0): """Returns HTML index code for this entry. If 'relpath' is empty, renders complete index.html file. If 'relpath' is not empty, then index is being included into a top-level log, and relpath should be passed to all sub-rendere...

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53.583333

20.12037

def get_neighborhood_overlap(self, node1, node2, connection_type=None): """Get the intersection of two nodes's neighborhoods. Neighborhood is defined by parameter connection_type. :param Vertex node1: First node. :param Vertex node2: Second node. :param Optional[str] connection_...

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43.272727

20.727273

def toMBI(self, getMemoryDump = False): """ Returns a L{win32.MemoryBasicInformation} object using the data retrieved from the database. @type getMemoryDump: bool @param getMemoryDump: (Optional) If C{True} retrieve the memory dump. Defaults to C{False} since this m...

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39.709677

13.129032

def print_tokens(output, tokens, style): """ Print a list of (Token, text) tuples in the given style to the output. """ assert isinstance(output, Output) assert isinstance(style, Style) # Reset first. output.reset_attributes() output.enable_autowrap() # Print all (token, text) tupl...

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23.888889

18.185185

def add_filename_pattern(self, dir_name, pattern): """ Adds a Unix shell-style wildcard pattern underneath the specified directory :param dir_name: str: directory that contains the pattern :param pattern: str: Unix shell-style wildcard pattern """ full_pattern = '{}{}{}'....

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51.222222

17.666667

def messaging(_context, repository, reset_on_start=False): """ Directive for setting up the user message resource in the appropriate repository. :param str repository: The repository to create the user messages resource in. """ discriminator = ('messaging', repository) reg = get_curre...

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40.666667

19.066667

def update_account(self, email=None, company_name=None, first_name=None, last_name=None, address=None, postal_code=None, city=None, state=None, country=None, phone=None): """ :: POST /:login :param email: Email address :type email: :...

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29.625

15.0625

def init_ui(self): """Setup control widget UI.""" self.control_layout = QHBoxLayout() self.setLayout(self.control_layout) self.reset_button = QPushButton() self.reset_button.setFixedSize(40, 40) self.reset_button.setIcon(QtGui.QIcon(WIN_PATH)) self.game_timer = QL...

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43.941176

11.588235

def updateBoostStrength(self): """ Update boost strength using given strength factor during training """ if self.training: self.boostStrength = self.boostStrength * self.boostStrengthFactor

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34.333333

15

def is_series(data): """ Checks whether the supplied data is of Series type. """ dd = None if 'dask' in sys.modules: import dask.dataframe as dd return((pd is not None and isinstance(data, pd.Series)) or (dd is not None and isinstance(data, dd.Series)))

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31.888889

13.222222

def frombed(args): """ %prog frombed bed_file [--options] > gff_file Convert bed to gff file. In bed, the accn will convert to key='ID' Default type will be `match` and default source will be `source` """ p = OptionParser(frombed.__doc__) p.add_option("--type", default="match", ...

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31

18.909091

def _GetDirectory(self): """Retrieves a directory. Returns: TSKPartitionDirectory: a directory or None if not available. """ if self.entry_type != definitions.FILE_ENTRY_TYPE_DIRECTORY: return None return TSKPartitionDirectory(self._file_system, self.path_spec)

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31.777778

20.444444

def stop_process(self): """Request the module process to stop and release it :return: None """ if not self.process: return logger.info("I'm stopping module %r (pid=%d)", self.name, self.process.pid) self.kill() # Clean inner process reference ...

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27.416667

19

def can_create_activities(self): """Tests if this user can create Activities. A return of true does not guarantee successful authorization. A return of false indicates that it is known creating an Activity will result in a PermissionDenied. This is intended as a hint to an applic...

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50.4

19.4

def authenticate_credentials(self, token: bytes, request=None): """ Authenticate the token with optional request for context. """ user = AuthToken.get_user_for_token(token) if user is None: raise AuthenticationFailed(_('Invalid auth token.')) if not user.is_...

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31.846154

20.923077

def release(self, device_info): """This function is called by the segmentation state machine when it has finished with the device information.""" if _debug: DeviceInfoCache._debug("release %r", device_info) # this information record might be used by more than one SSM if device_i...

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41.545455

14.636364

def skip_regex(lines, options): """ Optionally exclude lines that match '--skip-requirements-regex' """ skip_regex = options.skip_requirements_regex if options else None if skip_regex: lines = filterfalse(re.compile(skip_regex).search, lines) return lines

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35

17

def _infer_type(value, element_kind, element_name): """ Infer the CIM type name of the value, based upon its Python type. """ if value is None: raise ValueError( _format("Cannot infer CIM type of {0} {1!A} from its value when " "the value is None", element_kind, ...

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34.25

21.375

def prepare_sequencemanager(self) -> None: """Configure the |SequenceManager| object available in module |pub| following the definitions of the actual XML `reader` or `writer` element when available; if not use those of the XML `series_io` element. Compare the following results ...

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41.246377

15.942029

def __get_substitution_paths(g): """ get atoms paths from detached atom to attached :param g: CGRContainer :return: tuple of atoms numbers """ for n, nbrdict in g.adjacency(): for m, l in combinations(nbrdict, 2): nms = nbrdict[m]['sp_bond'] ...

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35.6

9.2

def launch_tor(config, reactor, tor_binary=None, progress_updates=None, connection_creator=None, timeout=None, kill_on_stderr=True, stdout=None, stderr=None): """ Deprecated; use launch() instead. See also controller....

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31

12

def isomap(geom, n_components=8, eigen_solver='auto', random_state=None, path_method='auto', distance_matrix=None, graph_distance_matrix = None, centered_matrix=None, solver_kwds=None): """ Parameters ---------- geom : a Geometry object from megaman.geometry.geometry ...

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48.180723

25.048193

def _create_parser() -> ArgumentParser: """ Creates argument parser for the CLI. :return: the argument parser """ parser = ArgumentParser(prog=EXECUTABLE_NAME, description=f"{DESCRIPTION} (v{VERSION})") parser.add_argument( f"-{VERBOSE_SHORT_PARAMETER}", action="count", default=0, ...

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62.928571

37.178571

def _first_glimpse_sensor(self, x_t): """ Compute first glimpse position using down-sampled image. """ downsampled_img = theano.tensor.signal.downsample.max_pool_2d(x_t, (4,4)) downsampled_img = downsampled_img.flatten() first_l = T.dot(downsampled_img, self.W_f) ...

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45

16.294118

def multipart_listuploads(self, bucket): """List objects in a bucket. :param bucket: A :class:`invenio_files_rest.models.Bucket` instance. :returns: The Flask response. """ return self.make_response( data=MultipartObject.query_by_bucket(bucket).limit(1000).all(), ...

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32.5

15.428571

def text(self, encoding=None, errors='strict'): r""" Open this file, read it in, return the content as a string. This uses 'U' mode in Python 2.3 and later, so '\r\n' and '\r' are automatically translated to '\n'. Optional arguments: encoding - The Unicode encoding (or charact...

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36.75

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def popdict(src, keys): """ Extract all keys (with values) from `src` dictionary as new dictionary values are removed from source dictionary. """ new = {} for key in keys: if key in src: new[key] = src.pop(key) return new

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def string_to_list(string, sep=",", filter_empty=False): """Transforma una string con elementos separados por `sep` en una lista.""" return [value.strip() for value in string.split(sep) if (not filter_empty or value)]

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def list_services(kwargs=None, conn=None, call=None): ''' .. versionadded:: 2015.8.0 List hosted services associated with the account CLI Example: .. code-block:: bash salt-cloud -f list_services my-azure ''' if call != 'function': raise SaltCloudSystemExit( '...

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def render_toolbar(context, config): """Render the toolbar for the given config.""" quill_config = getattr(quill_app, config) t = template.loader.get_template(quill_config['toolbar_template']) return t.render(context)

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def gaussian(x, y, xsigma, ysigma): """ Two-dimensional oriented Gaussian pattern (i.e., 2D version of a bell curve, like a normal distribution but not necessarily summing to 1.0). """ if xsigma==0.0 or ysigma==0.0: return x*0.0 with float_error_ignore(): x_w = np.divide(x,x...

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def check_api_error(api_response): print(api_response) """Check if returned API response contains an error.""" if type(api_response) == dict and 'code' in api_response and api_response['code'] <> 200: print("Server response code: %s" % api_response['code']) print("Server response: %s...

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def mass_2d(self, r, rho0, Rs): """ mass enclosed projected 2d sphere of radius r :param r: :param rho0: :param a: :param s: :return: """ sigma0 = self.rho2sigma(rho0, Rs) return self.mass_2d_lens(r, sigma0, Rs)

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23.416667

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def _make_expand_x_fn_for_non_batch_interpolation(y_ref, axis): """Make func to expand left/right (of axis) dims of tensors shaped like x.""" # This expansion is to help x broadcast with `y`, the output. # In the non-batch case, the output shape is going to be # y_ref.shape[:axis] + x.shape + y_ref.shape[axis...

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def find_executable(executable): ''' Finds executable in PATH Returns: string or None ''' logger = logging.getLogger(__name__) logger.debug("Checking executable '%s'...", executable) executable_path = _find_executable(executable) found = executable_path is not None if found:...

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def _get_render_prepared_object(cls, context, **option_values): """ Returns a fully prepared, request-aware menu object that can be used for rendering. ``context`` could be a ``django.template.Context`` object passed to ``render_from_tag()`` by a menu tag. """ ctx_vals = ...

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def sort(self): """Sort by detection time. .. rubric:: Example >>> family = Family( ... template=Template(name='a'), detections=[ ... Detection(template_name='a', detect_time=UTCDateTime(0) + 200, ... no_chans=8, detect_val=4.2, threshold=1.2, ...

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45.692308

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def validate_ok_for_update(update): """Validate an update document.""" validate_is_mapping("update", update) # Update can not be {} if not update: raise ValueError('update only works with $ operators') first = next(iter(update)) if not first.startswith('$'): raise ValueError('upd...

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def register_user_type(self, keyspace, user_type, klass): """ Registers a class to use to represent a particular user-defined type. Query parameters for this user-defined type will be assumed to be instances of `klass`. Result sets for this user-defined type will be instances of...

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def Tags(self): """Return all tags found in the value stream. Returns: A `{tagType: ['list', 'of', 'tags']}` dictionary. """ return { IMAGES: self.images.Keys(), AUDIO: self.audios.Keys(), HISTOGRAMS: self.histograms.Keys(), SCALARS: self.scalars.Keys(), CO...

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def daytime(date: datetime.date, daybreak: datetime.time = datetime.time(NORMAL_DAY_START_H), nightfall: datetime.time = datetime.time(NORMAL_DAY_END_H)) \ -> "Interval": """ Returns an :class:`Interval` representing daytime on the date given. """ ...

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41

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def load_data(self): """ Loads data files and stores the output in the data attribute. """ data = [] valid_dates = [] mrms_files = np.array(sorted(os.listdir(self.path + self.variable + "/"))) mrms_file_dates = np.array([m_file.split("_")[-2].split("-")[0] ...

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def once(ctx, name): """Run kibitzr checks once and exit""" from kibitzr.app import Application app = Application() sys.exit(app.run(once=True, log_level=ctx.obj['log_level'], names=name))

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def stop_notifying(cls, user_or_email, instance): """Delete the watch created by notify.""" super(InstanceEvent, cls).stop_notifying(user_or_email, object_id=instance.pk)

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58

15.75

def restore_from_checkpoint(sess, input_checkpoint): """Return a TensorFlow saver from a checkpoint containing the metagraph.""" saver = tf.train.import_meta_graph('{}.meta'.format(input_checkpoint)) saver.restore(sess, input_checkpoint) return saver

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52.4

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def remnant_mass_ulim(eta, ns_g_mass, bh_spin_z, ns_sequence, max_ns_g_mass, shift): """ Function that determines the maximum remnant disk mass for an NS-BH system with given symmetric mass ratio, NS mass, and BH spin parameter component along the orbital angular momentum. This is a wrapper to ...

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43.54902

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def XYZ_to_galcencyl(X,Y,Z,Xsun=1.,Zsun=0.,_extra_rot=True): """ NAME: XYZ_to_galcencyl PURPOSE: transform XYZ coordinates (wrt Sun) to cylindrical Galactocentric coordinates INPUT: X - X Y - Y Z - Z Xsun - cylindrical distance to the GC Z...

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def parse_input(s): """Parse the given input and intelligently transform it into an absolute, non-naive, timezone-aware datetime object for the UTC timezone. The input can be specified as a millisecond-precision UTC timestamp (or delta against Epoch), with or without a terminating 'L'. Alternatively, t...

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33.463415

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def exec_commands(commands: str, **parameters: Any) -> None: """Execute the given Python commands. Function |exec_commands| is thought for testing purposes only (see the main documentation on module |hyd|). Seperate individual commands by semicolons and replaced whitespaces with underscores: >>> ...

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37.916667

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def enable_enhanced_monitoring(stream_name, metrics, region=None, key=None, keyid=None, profile=None): ''' Enable enhanced monitoring for the specified shard-level metrics on stream stream_name CLI example:: salt myminion boto_kinesis.enable_enhanced_monitoring my_st...

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39.333333

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def SetGaugeCallback(self, metric_name, callback, fields=None): """See base class.""" self._gauge_metrics[metric_name].SetCallback(callback, fields)

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51.333333

16.333333

def to_delete(datetimes, years=0, months=0, weeks=0, days=0, hours=0, minutes=0, seconds=0, firstweekday=SATURDAY, now=None): """ Return a set of datetimes that should be deleted, out of ``datetimes``. See ``to_keep`` for a description of arguments. """ dat...

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42

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def update(self, friendly_name=values.unset, attributes=values.unset, date_created=values.unset, date_updated=values.unset, created_by=values.unset): """ Update the SessionInstance :param unicode friendly_name: The human-readable name of this session. :para...

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44.590909

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def get_default_config(self): """ Returns the default collector settings """ config = super(IPVSCollector, self).get_default_config() config.update({ 'bin': '/usr/sbin/ipvsadm', 'use_sudo': True, 'sudo_cmd': '/usr/b...

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32.5

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def description_of(file, name='stdin'): """Return a string describing the probable encoding of a file.""" u = UniversalDetector() for line in file: u.feed(line) u.close() result = u.result if result['encoding']: return '%s: %s with confidence %s' % (name, ...

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35.769231

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