kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def first_image(self): """Ready-only attribute that provides the value of the first non-none image that's not the thumbnail override field. """ # loop through image fields and grab the first non-none one for model_field in self._meta.fields: if isinstance(model_field,...	[ "def", "first_image", "(", "self", ")", ":", "# loop through image fields and grab the first non-none one", "for", "model_field", "in", "self", ".", "_meta", ".", "fields", ":", "if", "isinstance", "(", "model_field", ",", "ImageField", ")", ":", "if", "model_field"...	43.428571	13.214286
def set(self, tclass, tnum, tlvt=0, tdata=''): """set the values of the tag.""" if not isinstance(tdata, str): raise TypeError("tag data must be str") self.tagClass = tclass self.tagNumber = tnum self.tagLVT = tlvt self.tagData = tdata	[ "def", "set", "(", "self", ",", "tclass", ",", "tnum", ",", "tlvt", "=", "0", ",", "tdata", "=", "''", ")", ":", "if", "not", "isinstance", "(", "tdata", ",", "str", ")", ":", "raise", "TypeError", "(", "\"tag data must be str\"", ")", "self", ".", ...	32	11.777778
def warning(self, message, print_location=True): """Displays warning message. Uses exshared for current location of parsing""" msg = "Warning" if print_location and (exshared.location != None): wline = lineno(exshared.location, exshared.text) wcol = col(exshared.loca...	[ "def", "warning", "(", "self", ",", "message", ",", "print_location", "=", "True", ")", ":", "msg", "=", "\"Warning\"", "if", "print_location", "and", "(", "exshared", ".", "location", "!=", "None", ")", ":", "wline", "=", "lineno", "(", "exshared", ".",...	49.583333	14.416667
def main(): "Boots up the command line tool" logging.captureWarnings(True) args = build_parser().parse_args() # Configure logging args.setup_logging(args) # Dispatch into the appropriate subcommand function. try: return args.func(args) except SystemExit: raise except:...	[ "def", "main", "(", ")", ":", "logging", ".", "captureWarnings", "(", "True", ")", "args", "=", "build_parser", "(", ")", ".", "parse_args", "(", ")", "# Configure logging", "args", ".", "setup_logging", "(", "args", ")", "# Dispatch into the appropriate subcomm...	28.071429	17.785714
def stubs_clustering(network,use_reduced_coordinates=True, line_length_factor=1.0): """Cluster network by reducing stubs and stubby trees (i.e. sequentially reducing dead-ends). Parameters ---------- network : pypsa.Network use_reduced_coordinates : boolean If True, do not average clust...	[ "def", "stubs_clustering", "(", "network", ",", "use_reduced_coordinates", "=", "True", ",", "line_length_factor", "=", "1.0", ")", ":", "busmap", "=", "busmap_by_stubs", "(", "network", ")", "#reset coordinates to the new reduced guys, rather than taking an average", "if",...	36.928571	24.571429
def subset_by_supported(input_file, get_coords, calls_by_name, work_dir, data, headers=("#",)): """Limit CNVkit input to calls with support from another caller. get_coords is a function that return chrom, start, end from a line of the input_file, allowing handling of multiple input ...	[ "def", "subset_by_supported", "(", "input_file", ",", "get_coords", ",", "calls_by_name", ",", "work_dir", ",", "data", ",", "headers", "=", "(", "\"#\"", ",", ")", ")", ":", "support_files", "=", "[", "(", "c", ",", "tz", ".", "get_in", "(", "[", "c",...	57.735294	25
def datasets(self) -> tuple: """Datasets.""" return tuple(v for _, v in self.items() if isinstance(v, h5py.Dataset))	[ "def", "datasets", "(", "self", ")", "->", "tuple", ":", "return", "tuple", "(", "v", "for", "_", ",", "v", "in", "self", ".", "items", "(", ")", "if", "isinstance", "(", "v", ",", "h5py", ".", "Dataset", ")", ")" ]	43.333333	17
def MAU(self): '''Result of preconditioned operator to deflation space, i.e., :math:`MM_lAM_rU`.''' if self._MAU is None: self._MAU = self.linear_system.M * self.AU return self._MAU	[ "def", "MAU", "(", "self", ")", ":", "if", "self", ".", "_MAU", "is", "None", ":", "self", ".", "_MAU", "=", "self", ".", "linear_system", ".", "M", "*", "self", ".", "AU", "return", "self", ".", "_MAU" ]	36.666667	18
def dump_state(self): """Dump the current state of this emulated tile as a dictionary. This function just dumps the status of the config variables. It is designed to be called in a chained fashion to serialize the complete state of a tile subclass. Returns: dict: The curre...	[ "def", "dump_state", "(", "self", ")", ":", "return", "{", "\"config_variables\"", ":", "{", "x", ":", "base64", ".", "b64encode", "(", "y", ".", "current_value", ")", ".", "decode", "(", "'utf-8'", ")", "for", "x", ",", "y", "in", "self", ".", "_con...	41.307692	34.615385
def _extract_shifted_mean_gauss(image, mask = slice(None), offset = None, sigma = 1, voxelspacing = None): """ Internal, single-image version of `shifted_mean_gauss`. """ # set voxel spacing if voxelspacing is None: voxelspacing = [1.] * image.ndim # set offset if offset is None:...	[ "def", "_extract_shifted_mean_gauss", "(", "image", ",", "mask", "=", "slice", "(", "None", ")", ",", "offset", "=", "None", ",", "sigma", "=", "1", ",", "voxelspacing", "=", "None", ")", ":", "# set voxel spacing", "if", "voxelspacing", "is", "None", ":",...	31.730769	16.115385
def get_smokedetector_by_name(self, name): """Retrieves a smokedetector object by its name :param name: The name of the smokedetector to return :return: A smokedetector object """ return next((smokedetector for smokedetector in self.smokedetectors if smokede...	[ "def", "get_smokedetector_by_name", "(", "self", ",", "name", ")", ":", "return", "next", "(", "(", "smokedetector", "for", "smokedetector", "in", "self", ".", "smokedetectors", "if", "smokedetector", ".", "name", ".", "lower", "(", ")", "==", "name", ".", ...	44.5	16.5
def _delete_os_nwk(self, tenant_id, tenant_name, direc, is_fw_virt=False): """Delete the network created in Openstack. Function to delete Openstack network, It also releases the associated segmentation, VLAN and subnets. """ serv_obj = self.get_service_obj(tenant_id) fw_...	[ "def", "_delete_os_nwk", "(", "self", ",", "tenant_id", ",", "tenant_name", ",", "direc", ",", "is_fw_virt", "=", "False", ")", ":", "serv_obj", "=", "self", ".", "get_service_obj", "(", "tenant_id", ")", "fw_dict", "=", "serv_obj", ".", "get_fw_dict", "(", ...	42.023256	15.604651
def agents(status, all): ''' List and manage agents. (admin privilege required) ''' fields = [ ('ID', 'id'), ('Status', 'status'), ('Region', 'region'), ('First Contact', 'first_contact'), ('CPU Usage (%)', 'cpu_cur_pct'), ('Used Memory (MiB)', 'mem_cu...	[ "def", "agents", "(", "status", ",", "all", ")", ":", "fields", "=", "[", "(", "'ID'", ",", "'id'", ")", ",", "(", "'Status'", ",", "'status'", ")", ",", "(", "'Region'", ",", "'region'", ")", ",", "(", "'First Contact'", ",", "'first_contact'", ")",...	34.78481	17.924051
def save(d, output_file, indent=4, spacer=" ", quote='"', newlinechar="\n", end_comment=False, **kwargs): """ Write a dictionary to an output Mapfile on disk Parameters ---------- d: dict A Python dictionary based on the the mappyfile schema output_file: string The output filen...	[ "def", "save", "(", "d", ",", "output_file", ",", "indent", "=", "4", ",", "spacer", "=", "\" \"", ",", "quote", "=", "'\"'", ",", "newlinechar", "=", "\"\\n\"", ",", "end_comment", "=", "False", ",", "", "", "kwargs", ")", ":", "map_string", "=", ...	28.886364	24.340909
def compactor(conf): """ The compactor daemon. This fuction watches the sorted set containing bucket keys that need to be compacted, performing the necessary compaction. :param conf: A turnstile.config.Config instance containing the configuration for the compactor daemon. Note th...	[ "def", "compactor", "(", "conf", ")", ":", "# Get the database handle", "db", "=", "conf", ".", "get_database", "(", "'compactor'", ")", "# Get the limits container", "limit_map", "=", "LimitContainer", "(", "conf", ",", "db", ")", "# Get the compactor configuration",...	34.367647	19.632353
def mutex_opts(dict,ex_op): """Check for presence of mutually exclusive keys in a dict. Call: mutex_opts(dict,[[op1a,op1b],[op2a,op2b]...]""" for op1,op2 in ex_op: if op1 in dict and op2 in dict: raise ValueError,'\n* ERROR in Arguments * '\ 'Options '+op1+' and '+...	[ "def", "mutex_opts", "(", "dict", ",", "ex_op", ")", ":", "for", "op1", ",", "op2", "in", "ex_op", ":", "if", "op1", "in", "dict", "and", "op2", "in", "dict", ":", "raise", "ValueError", ",", "'\\n* ERROR in Arguments * '", "'Options '", "+", "op1", ...	42.875	15.125
def Collect(self, top_frame): """Collects call stack, local variables and objects. Starts collection from the specified frame. We don't start from the top frame to exclude the frames due to debugger. Updates the content of self.breakpoint. Args: top_frame: top frame to start data collection....	[ "def", "Collect", "(", "self", ",", "top_frame", ")", ":", "# Evaluate call stack.", "frame", "=", "top_frame", "top_line", "=", "self", ".", "breakpoint", "[", "'location'", "]", "[", "'line'", "]", "breakpoint_frames", "=", "self", ".", "breakpoint", "[", ...	37.273973	20.575342
def allow_rwe(self, name): """Allow all privileges for a particular name group (user, group, other).""" assert name in PERMISSIONS.keys() os.chmod(self.file_path, PERMISSIONS[name]['all'])	[ "def", "allow_rwe", "(", "self", ",", "name", ")", ":", "assert", "name", "in", "PERMISSIONS", ".", "keys", "(", ")", "os", ".", "chmod", "(", "self", ".", "file_path", ",", "PERMISSIONS", "[", "name", "]", "[", "'all'", "]", ")" ]	52.25	8.25
def stop(self, message): """ Manually stops timer with the message. :param message: The display message. """ self._stop = time.clock() VSGLogger.info("{0:<20} - Finished [{1}s]".format(message, self.pprint(self._stop - self._start)))	[ "def", "stop", "(", "self", ",", "message", ")", ":", "self", ".", "_stop", "=", "time", ".", "clock", "(", ")", "VSGLogger", ".", "info", "(", "\"{0:<20} - Finished [{1}s]\"", ".", "format", "(", "message", ",", "self", ".", "pprint", "(", "self", "."...	34.5	17.5
def update_linode(linode_id, update_args=None): ''' Updates a Linode's properties. linode_id The ID of the Linode to shutdown. Required. update_args The args to update the Linode with. Must be in dictionary form. ''' update_args.update({'LinodeID': linode_id}) result = _qu...	[ "def", "update_linode", "(", "linode_id", ",", "update_args", "=", "None", ")", ":", "update_args", ".", "update", "(", "{", "'LinodeID'", ":", "linode_id", "}", ")", "result", "=", "_query", "(", "'linode'", ",", "'update'", ",", "args", "=", "update_args...	25.266667	24.466667
def getCandScoresMap(self, profile): """ Returns a dictionary that associates integer representations of each candidate with their Copeland score. :ivar Profile profile: A Profile object that represents an election profile. """ # Currently, we expect the profile to cont...	[ "def", "getCandScoresMap", "(", "self", ",", "profile", ")", ":", "# Currently, we expect the profile to contain complete ordering over candidates. Ties are", "# allowed however.", "elecType", "=", "profile", ".", "getElecType", "(", ")", "if", "elecType", "!=", "\"soc\"", ...	39.081081	21.459459
def onpress(self, event): """ Reacts to key commands :param event: a keyboard event :return: if 'c' is pressed, clear all region patches """ if event.key == 'c': # clears all the contours for patch in self.region_patches: patch.remove() ...	[ "def", "onpress", "(", "self", ",", "event", ")", ":", "if", "event", ".", "key", "==", "'c'", ":", "# clears all the contours", "for", "patch", "in", "self", ".", "region_patches", ":", "patch", ".", "remove", "(", ")", "self", ".", "region_patches", "=...	35.538462	7.076923
def add_tokens_for_group(self, with_pass=False): """Add the tokens for the group signature""" kls = self.groups.super_kls name = self.groups.kls_name # Reset indentation to beginning and add signature self.reset_indentation('') self.result.extend(self.tokens.make_describ...	[ "def", "add_tokens_for_group", "(", "self", ",", "with_pass", "=", "False", ")", ":", "kls", "=", "self", ".", "groups", ".", "super_kls", "name", "=", "self", ".", "groups", ".", "kls_name", "# Reset indentation to beginning and add signature", "self", ".", "re...	32.428571	15.571429
def get_items_batch(self, item_request_data, project=None): """GetItemsBatch. Post for retrieving a set of items given a list of paths or a long path. Allows for specifying the recursionLevel and version descriptors for each path. :param :class:`<TfvcItemRequestData> <azure.devops.v5_0.tfvc.mode...	[ "def", "get_items_batch", "(", "self", ",", "item_request_data", ",", "project", "=", "None", ")", ":", "route_values", "=", "{", "}", "if", "project", "is", "not", "None", ":", "route_values", "[", "'project'", "]", "=", "self", ".", "_serialize", ".", ...	60.705882	27.529412
def _parse_view_results(self, rows, factory, options): ''' rows here should be a list of tuples: - (key, value) for reduce views - (key, value, id) for nonreduce views without include docs - (key, value, id, doc) for nonreduce with with include docs ''' kwargs ...	[ "def", "_parse_view_results", "(", "self", ",", "rows", ",", "factory", ",", "options", ")", ":", "kwargs", "=", "dict", "(", ")", "kwargs", "[", "'reduced'", "]", "=", "factory", ".", "use_reduce", "and", "options", ".", "get", "(", "'reduce'", ",", "...	51.238095	22.380952
def _MergeSameId(self): """Tries to merge entities based on their ids. This tries to merge only the entities from the old and new schedules which have the same id. These are added into the merged schedule. Entities which do not merge or do not have the same id as another entity in the other schedul...	[ "def", "_MergeSameId", "(", "self", ")", ":", "a_not_merged", "=", "[", "]", "b_not_merged", "=", "[", "]", "for", "a", "in", "self", ".", "_GetIter", "(", "self", ".", "feed_merger", ".", "a_schedule", ")", ":", "try", ":", "b", "=", "self", ".", ...	38.736842	23.491228
def from_dict(cls, d, ignore=()): """Create an instance from a serialized version of cls Args: d(dict): Endpoints of cls to set ignore(tuple): Keys to ignore Returns: Instance of this class """ filtered = {} for k, v in d.items(): ...	[ "def", "from_dict", "(", "cls", ",", "d", ",", "ignore", "=", "(", ")", ")", ":", "filtered", "=", "{", "}", "for", "k", ",", "v", "in", "d", ".", "items", "(", ")", ":", "if", "k", "==", "\"typeid\"", ":", "assert", "v", "==", "cls", ".", ...	30.956522	14.304348
def FromString(self, string): """Parse a bool from a string.""" if string.lower() in ("false", "no", "n"): return False if string.lower() in ("true", "yes", "y"): return True raise TypeValueError("%s is not recognized as a boolean value." % string)	[ "def", "FromString", "(", "self", ",", "string", ")", ":", "if", "string", ".", "lower", "(", ")", "in", "(", "\"false\"", ",", "\"no\"", ",", "\"n\"", ")", ":", "return", "False", "if", "string", ".", "lower", "(", ")", "in", "(", "\"true\"", ",",...	30	20.555556
def tox_addoption(parser): """Add arguments and needed monkeypatches.""" parser.add_argument( '--travis-after', dest='travis_after', action='store_true', help='Exit successfully after all Travis jobs complete successfully.') if 'TRAVIS' in os.environ: pypy_version_monkeypatch() ...	[ "def", "tox_addoption", "(", "parser", ")", ":", "parser", ".", "add_argument", "(", "'--travis-after'", ",", "dest", "=", "'travis_after'", ",", "action", "=", "'store_true'", ",", "help", "=", "'Exit successfully after all Travis jobs complete successfully.'", ")", ...	41	19.111111
def reference(self, t, i, in_group=False): """Handle references.""" current = [] if not in_group and t == "m": current.append(self._re_start_wb) elif not in_group and t == "M": current.append(self._re_end_wb) elif not in_group and t == "R": c...	[ "def", "reference", "(", "self", ",", "t", ",", "i", ",", "in_group", "=", "False", ")", ":", "current", "=", "[", "]", "if", "not", "in_group", "and", "t", "==", "\"m\"", ":", "current", ".", "append", "(", "self", ".", "_re_start_wb", ")", "elif"...	40.787234	16.021277
def _segment(cls, segment): """ Returns a property capable of setting and getting a segment. """ return property( fget=lambda x: cls._get_segment(x, segment), fset=lambda x, v: cls._set_segment(x, segment, v), )	[ "def", "_segment", "(", "cls", ",", "segment", ")", ":", "return", "property", "(", "fget", "=", "lambda", "x", ":", "cls", ".", "_get_segment", "(", "x", ",", "segment", ")", ",", "fset", "=", "lambda", "x", ",", "v", ":", "cls", ".", "_set_segmen...	33.5	15.75
def process_command(command: CommandInput, matrix: VarMatrix) -> List[Command]: """Generate all combinations of commands given a variable matrix. Processes the commands to be sequences of strings. """ assert command is not None if isinstance(command, str): command_list = [Command(command, ...	[ "def", "process_command", "(", "command", ":", "CommandInput", ",", "matrix", ":", "VarMatrix", ")", "->", "List", "[", "Command", "]", ":", "assert", "command", "is", "not", "None", "if", "isinstance", "(", "command", ",", "str", ")", ":", "command_list",...	37.916667	19.583333
def cofold(self, strand1, strand2, temp=37.0, dangles=2, nolp=False, nogu=False, noclosinggu=False, constraints=None, canonicalbponly=False, partition=-1, pfscale=None, gquad=False): '''Run the RNAcofold command and retrieve the result in a dictionary. :param strand1: Stra...	[ "def", "cofold", "(", "self", ",", "strand1", ",", "strand2", ",", "temp", "=", "37.0", ",", "dangles", "=", "2", ",", "nolp", "=", "False", ",", "nogu", "=", "False", ",", "noclosinggu", "=", "False", ",", "constraints", "=", "None", ",", "canonical...	45.349593	19.902439
def reffinder(sectionObj): """ add reference indeces to sectionobj['references'] :param sectionObj :return: a section obj w references: field """ text = sectionObj['text'] reftags = [x for x in refTagRegEx.finditer(text)] if reftags: references = [] for tag in reftags: ...	[ "def", "reffinder", "(", "sectionObj", ")", ":", "text", "=", "sectionObj", "[", "'text'", "]", "reftags", "=", "[", "x", "for", "x", "in", "refTagRegEx", ".", "finditer", "(", "text", ")", "]", "if", "reftags", ":", "references", "=", "[", "]", "for...	26	15.263158
def drop_first(count): """ Assumes an iterable on the input, returns an iterable with identical items except for the first `count`. >>> range(10) > drop_first(5) \| tuple (5, 6, 7, 8, 9) """ def _drop_first(iterable): g = (x for x in range(1, count + 1)) return dropwhile( ...	[ "def", "drop_first", "(", "count", ")", ":", "def", "_drop_first", "(", "iterable", ")", ":", "g", "=", "(", "x", "for", "x", "in", "range", "(", "1", ",", "count", "+", "1", ")", ")", "return", "dropwhile", "(", "lambda", "i", ":", "unless", "("...	34.153846	16.307692
def _parse_publisher(details): """ Parse publisher of the book. Args: details (obj): HTMLElement containing slice of the page with details. Returns: str/None: Publisher's name as string or None if not found. """ publisher = _get_td_or_none( details, "ctl00_Conte...	[ "def", "_parse_publisher", "(", "details", ")", ":", "publisher", "=", "_get_td_or_none", "(", "details", ",", "\"ctl00_ContentPlaceHolder1_tblRowNakladatel\"", ")", "# publisher is not specified", "if", "not", "publisher", ":", "return", "None", "publisher", "=", "dhtm...	22.115385	22.5
def set_background(self, background): """ Set the background color of the widget. """ scene = self.scene scene.setBackgroundBrush(QColor.fromRgba(background.argb))	[ "def", "set_background", "(", "self", ",", "background", ")", ":", "scene", "=", "self", ".", "scene", "scene", ".", "setBackgroundBrush", "(", "QColor", ".", "fromRgba", "(", "background", ".", "argb", ")", ")" ]	31.833333	13.833333
def diffplot(self, f, delay=1, lfilter=None, **kargs): """diffplot(f, delay=1, lfilter=None) Applies a function to couples (l[i],l[i+delay]) A list of matplotlib.lines.Line2D is returned. """ # Get the list of packets if lfilter is None: lst_pkts = [f(self.r...	[ "def", "diffplot", "(", "self", ",", "f", ",", "delay", "=", "1", ",", "lfilter", "=", "None", ",", "", "", "kargs", ")", ":", "# Get the list of packets", "if", "lfilter", "is", "None", ":", "lst_pkts", "=", "[", "f", "(", "self", ".", "res", "[...	32.923077	17.538462
def _get_button_attrs(self, tool): """ Get the HTML attributes associated with a tool. There are some standard attributes (class and title) that the template will always want. Any number of additional attributes can be specified and passed on. This is kinda awkward and due for a...	[ "def", "_get_button_attrs", "(", "self", ",", "tool", ")", ":", "attrs", "=", "getattr", "(", "tool", ",", "'attrs'", ",", "{", "}", ")", "# href is not allowed to be set. should an exception be raised instead?", "if", "'href'", "in", "attrs", ":", "attrs", ".", ...	39.3	17.633333
def build_parameter(field: Field) -> Mapping[str, Any]: """ Build JSON parameter from a marshmallow field. """ builder = Parameters() return builder.build(field)	[ "def", "build_parameter", "(", "field", ":", "Field", ")", "->", "Mapping", "[", "str", ",", "Any", "]", ":", "builder", "=", "Parameters", "(", ")", "return", "builder", ".", "build", "(", "field", ")" ]	25.142857	12.571429
def calc_registration(preregistration_map, anchors, max_steps=2000, max_step_size=0.05, method='random'): ''' calc_registration is a calculator that creates the registration coordinates. ''' # if max steps is a tuple (max, stride) then a trajectory is saved into # the registere...	[ "def", "calc_registration", "(", "preregistration_map", ",", "anchors", ",", "max_steps", "=", "2000", ",", "max_step_size", "=", "0.05", ",", "method", "=", "'random'", ")", ":", "# if max steps is a tuple (max, stride) then a trajectory is saved into", "# the registered_m...	40.333333	13.833333
def peripheral_didDiscoverCharacteristicsForService_error_(self, peripheral, service, error): """Called when characteristics are discovered for a service.""" logger.debug('peripheral_didDiscoverCharacteristicsForService_error called') # Stop if there was some kind of error. if error is n...	[ "def", "peripheral_didDiscoverCharacteristicsForService_error_", "(", "self", ",", "peripheral", ",", "service", ",", "error", ")", ":", "logger", ".", "debug", "(", "'peripheral_didDiscoverCharacteristicsForService_error called'", ")", "# Stop if there was some kind of error.", ...	57.722222	20.777778
def clone(self, config, kwargs): """Make a clone of this analysis instance.""" gta = GTAnalysis(config, kwargs) gta._roi = copy.deepcopy(self.roi) return gta	[ "def", "clone", "(", "self", ",", "config", ",", "", "", "kwargs", ")", ":", "gta", "=", "GTAnalysis", "(", "config", ",", "", "", "kwargs", ")", "gta", ".", "_roi", "=", "copy", ".", "deepcopy", "(", "self", ".", "roi", ")", "return", "gta" ...	37.8	6.4
def serialize(ty, values, *kwargs): """ Serialize value using type specification in ty. ABI.serialize('int256', 1000) ABI.serialize('(int, int256)', 1000, 2000) """ try: parsed_ty = abitypes.parse(ty) except Exception as e: # Catch and re...	[ "def", "serialize", "(", "ty", ",", "", "values", ",", "", "*", "kwargs", ")", ":", "try", ":", "parsed_ty", "=", "abitypes", ".", "parse", "(", "ty", ")", "except", "Exception", "as", "e", ":", "# Catch and rebrand parsing errors", "raise", "EthereumErr...	38.44	15.4
def _c3_merge(sequences): # noqa """Merges MROs in sequences to a single MRO using the C3 algorithm. Adapted from http://www.python.org/download/releases/2.3/mro/. """ result = [] while True: sequences = [s for s in sequences if s] # purge empty sequences if not sequences: ...	[ "def", "_c3_merge", "(", "sequences", ")", ":", "# noqa", "result", "=", "[", "]", "while", "True", ":", "sequences", "=", "[", "s", "for", "s", "in", "sequences", "if", "s", "]", "# purge empty sequences", "if", "not", "sequences", ":", "return", "resul...	34	16.230769
def list_certs(self, filters=None): """Retrieve loaded certificates. :param filters: retrieve only matching certificates (optional) :type filters: dict :return: list of installed trap, drop and bypass policies :rtype: list """ _, cert_list = self.handler.streamed...	[ "def", "list_certs", "(", "self", ",", "filters", "=", "None", ")", ":", "_", ",", "cert_list", "=", "self", ".", "handler", ".", "streamed_request", "(", "\"list-certs\"", ",", "\"list-cert\"", ",", "filters", ")", "return", "cert_list" ]	39.272727	19
def formatter(self, value): ''' Format a enumerate value to enumerate names if possible. Used to generate human readable dump result. ''' if not self._bitwise: n = self.getName(value) if n is None: return value else: ...	[ "def", "formatter", "(", "self", ",", "value", ")", ":", "if", "not", "self", ".", "_bitwise", ":", "n", "=", "self", ".", "getName", "(", "value", ")", "if", "n", "is", "None", ":", "return", "value", "else", ":", "return", "n", "else", ":", "na...	31.695652	17.173913
def is_valid_index(self, code): """ returns: True \| Flase , based on whether code is valid """ index_list = self.get_index_list() return True if code.upper() in index_list else False	[ "def", "is_valid_index", "(", "self", ",", "code", ")", ":", "index_list", "=", "self", ".", "get_index_list", "(", ")", "return", "True", "if", "code", ".", "upper", "(", ")", "in", "index_list", "else", "False" ]	36.166667	8.833333
def make_linear_workflow(tasks, *kwargs): """Factory method for creating linear workflows. :param tasks: EOTask's t1,t2,...,tk with dependencies t1->t2->...->tk :param kwargs: Optional keyword arguments (such as workflow name) forwarded to the constructor :return: A new EO workfl...	[ "def", "make_linear_workflow", "(", "", "tasks", ",", "", "*", "kwargs", ")", ":", "warnings", ".", "warn", "(", "\"Method 'make_linear_workflow' will soon be removed. Use LinearWorkflow class instead\"", ",", "DeprecationWarning", ",", "stacklevel", "=", "2", ")", "r...	48.333333	24.416667
def _step(vertices, d_limit, temperature, placements, l2v, v2n, vertices_resources, fixed_vertices, machine, has_wrap_around_links, random): """Attempt a single swap operation: the kernel of the Simulated Annealing algorithm. Parameters ---------- vertices : [vertex, ...] ...	[ "def", "_step", "(", "vertices", ",", "d_limit", ",", "temperature", ",", "placements", ",", "l2v", ",", "v2n", ",", "vertices_resources", ",", "fixed_vertices", ",", "machine", ",", "has_wrap_around_links", ",", "random", ")", ":", "# Special case: If the machine...	43.692913	21.047244
def extract_common_fields(self, data): """Extract fields from a basic user query.""" email = None for curr_email in data.get("emails", []): email = email or curr_email.get("email") if curr_email.get("verified", False) and \ curr_email.get("primary", Fa...	[ "def", "extract_common_fields", "(", "self", ",", "data", ")", ":", "email", "=", "None", "for", "curr_email", "in", "data", ".", "get", "(", "\"emails\"", ",", "[", "]", ")", ":", "email", "=", "email", "or", "curr_email", ".", "get", "(", "\"email\""...	36.235294	12.529412
def operator_complexity(self): """Operator complexity of this multigrid hierarchy. Defined as: Number of nonzeros in the matrix on all levels / Number of nonzeros in the matrix on the finest level """ return sum([level.A.nnz for level in self.levels]) /\ ...	[ "def", "operator_complexity", "(", "self", ")", ":", "return", "sum", "(", "[", "level", ".", "A", ".", "nnz", "for", "level", "in", "self", ".", "levels", "]", ")", "/", "float", "(", "self", ".", "levels", "[", "0", "]", ".", "A", ".", "nnz", ...	34.3	17.7
def sample_top(a=None, top_k=10): """Sample from ``top_k`` probabilities. Parameters ---------- a : list of float List of probabilities. top_k : int Number of candidates to be considered. """ if a is None: a = [] idx = np.argpartition(a, -top_k)[-top_k:] pr...	[ "def", "sample_top", "(", "a", "=", "None", ",", "top_k", "=", "10", ")", ":", "if", "a", "is", "None", ":", "a", "=", "[", "]", "idx", "=", "np", ".", "argpartition", "(", "a", ",", "-", "top_k", ")", "[", "-", "top_k", ":", "]", "probs", ...	22.45	17.45
def transition_retry(self, pipeline_key, retry_message): """Marks the given pipeline as requiring another retry. Does nothing if all attempts have been exceeded. Args: pipeline_key: db.Key of the _PipelineRecord that needs to be retried. retry_message: User-supplied message indicating the reas...	[ "def", "transition_retry", "(", "self", ",", "pipeline_key", ",", "retry_message", ")", ":", "def", "txn", "(", ")", ":", "pipeline_record", "=", "db", ".", "get", "(", "pipeline_key", ")", "if", "pipeline_record", "is", "None", ":", "logging", ".", "warni...	43.301587	19.333333
def _erc_weights_ccd(x0, cov, b, maximum_iterations, tolerance): """ Calculates the equal risk contribution / risk parity weights given a DataFrame of returns. Args: * x0 (np.array): Starting asset weights. ...	[ "def", "_erc_weights_ccd", "(", "x0", ",", "cov", ",", "b", ",", "maximum_iterations", ",", "tolerance", ")", ":", "n", "=", "len", "(", "x0", ")", "x", "=", "x0", ".", "copy", "(", ")", "var", "=", "np", ".", "diagonal", "(", "cov", ")", "ctr", ...	30.508475	20.372881
def www_authenticate(self): """The `WWW-Authenticate` header in a parsed form.""" def on_update(www_auth): if not www_auth and 'www-authenticate' in self.headers: del self.headers['www-authenticate'] elif www_auth: self.headers['WWW-Authenticate'] ...	[ "def", "www_authenticate", "(", "self", ")", ":", "def", "on_update", "(", "www_auth", ")", ":", "if", "not", "www_auth", "and", "'www-authenticate'", "in", "self", ".", "headers", ":", "del", "self", ".", "headers", "[", "'www-authenticate'", "]", "elif", ...	50.222222	15.666667
def match_in_kwargs(self, match_args, kwargs): """Matches against kwargs.""" for match, default in match_args: names = get_match_names(match) if names: tempvar = self.get_temp_var() self.add_def( tempvar + " = " ...	[ "def", "match_in_kwargs", "(", "self", ",", "match_args", ",", "kwargs", ")", ":", "for", "match", ",", "default", "in", "match_args", ":", "names", "=", "get_match_names", "(", "match", ")", "if", "names", ":", "tempvar", "=", "self", ".", "get_temp_var",...	42.333333	15.833333
def response_class(self, cls): """ Override the default wrapper used for the response. """ s = self._clone() s._response_class = cls return s	[ "def", "response_class", "(", "self", ",", "cls", ")", ":", "s", "=", "self", ".", "_clone", "(", ")", "s", ".", "_response_class", "=", "cls", "return", "s" ]	26.142857	11
def make_all_uppercase( lst: Union[list, tuple, str, set] ) -> Union[list, tuple, str, set]: """Make all characters uppercase. It supports characters in a (mix of) list, tuple, set or string. The return value is of the same type of the input value. """ if not is...	[ "def", "make_all_uppercase", "(", "lst", ":", "Union", "[", "list", ",", "tuple", ",", "str", ",", "set", "]", ")", "->", "Union", "[", "list", ",", "tuple", ",", "str", ",", "set", "]", ":", "if", "not", "isinstance", "(", "lst", ",", "(", "list...	31.242424	19.363636
def reset_window_layout(self): """Reset window layout to default""" answer = QMessageBox.warning(self, _("Warning"), _("Window layout will be reset to default settings: " "this affects window position, size and dockwidgets.\n" "Do y...	[ "def", "reset_window_layout", "(", "self", ")", ":", "answer", "=", "QMessageBox", ".", "warning", "(", "self", ",", "_", "(", "\"Warning\"", ")", ",", "_", "(", "\"Window layout will be reset to default settings: \"", "\"this affects window position, size and dockwidgets...	52.777778	14.666667
def meraculous_runner(self): """ Check to make sure that the allAssembliesDir has been created, if not, make it. This will only execute for the first time an assembly has been run in this directory. Run the directory from allAssembliesDir. The self.callString instance at...	[ "def", "meraculous_runner", "(", "self", ")", ":", "#set the dir to temp assembly dir", "os", ".", "chdir", "(", "self", ".", "allAssembliesDir", ")", "print", "(", "self", ".", "callString", ")", "p", "=", "subprocess", ".", "run", "(", "self", ".", "callSt...	37.851852	20.518519
def is_complex_floating_dtype(dtype): """Return ``True`` if ``dtype`` is a complex floating point type.""" dtype = np.dtype(dtype) return np.issubsctype(getattr(dtype, 'base', None), np.complexfloating)	[ "def", "is_complex_floating_dtype", "(", "dtype", ")", ":", "dtype", "=", "np", ".", "dtype", "(", "dtype", ")", "return", "np", ".", "issubsctype", "(", "getattr", "(", "dtype", ",", "'base'", ",", "None", ")", ",", "np", ".", "complexfloating", ")" ]	52.75	12.75
def team_present( name, description=None, repo_names=None, privacy='secret', permission='pull', members=None, enforce_mfa=False, no_mfa_grace_seconds=0, profile="github", **kwargs): ''' Ensure a team is present name Thi...	[ "def", "team_present", "(", "name", ",", "description", "=", "None", ",", "repo_names", "=", "None", ",", "privacy", "=", "'secret'", ",", "permission", "=", "'pull'", ",", "members", "=", "None", ",", "enforce_mfa", "=", "False", ",", "no_mfa_grace_seconds"...	40.246154	22.984615
def plot_all(self, t=0, f_start=None, f_stop=None, logged=False, if_id=0, kurtosis=True, **kwargs): """ Plot waterfall of data as well as spectrum; also, placeholder to make even more complicated plots in the future. Args: f_start (float): start frequency, in MHz f_stop (float):...	[ "def", "plot_all", "(", "self", ",", "t", "=", "0", ",", "f_start", "=", "None", ",", "f_stop", "=", "None", ",", "logged", "=", "False", ",", "if_id", "=", "0", ",", "kurtosis", "=", "True", ",", "", "", "kwargs", ")", ":", "if", "self", "."...	39.635036	21.20438
def add_constraints(self): """ Set the base constraints on the relation query. :rtype: None """ if self._constraints: foreign_key = getattr(self._parent, self._foreign_key, None) if foreign_key is None: self._query = None else:...	[ "def", "add_constraints", "(", "self", ")", ":", "if", "self", ".", "_constraints", ":", "foreign_key", "=", "getattr", "(", "self", ".", "_parent", ",", "self", ".", "_foreign_key", ",", "None", ")", "if", "foreign_key", "is", "None", ":", "self", ".", ...	30.375	17.5
def run_model(self, times=None, weather=None): """ Run the model. Parameters ---------- times : None or DatetimeIndex, default None Times at which to evaluate the model. Can be None if attribute `times` is already set. weather : None or DataFrame,...	[ "def", "run_model", "(", "self", ",", "times", "=", "None", ",", "weather", "=", "None", ")", ":", "self", ".", "prepare_inputs", "(", "times", ",", "weather", ")", "self", ".", "aoi_model", "(", ")", "self", ".", "spectral_model", "(", ")", "self", ...	32.944444	20.666667
def generate_confirmation_key(identity_secret, tag, timestamp): """Generate confirmation key for trades. Can only be used once. :param identity_secret: authenticator identity secret :type identity_secret: bytes :param tag: tag identifies what the request, see list below :type tag: str :param ti...	[ "def", "generate_confirmation_key", "(", "identity_secret", ",", "tag", ",", "timestamp", ")", ":", "data", "=", "struct", ".", "pack", "(", "'>Q'", ",", "int", "(", "timestamp", ")", ")", "+", "tag", ".", "encode", "(", "'ascii'", ")", "# this will NOT st...	35.409091	20.045455
def nested_dict_to_list(path, dic, exclusion=None): """ Transform nested dict to list """ result = [] exclusion = ['__self'] if exclusion is None else exclusion for key, value in dic.items(): if not any([exclude in key for exclude in exclusion]): if isinstance(value, dict):...	[ "def", "nested_dict_to_list", "(", "path", ",", "dic", ",", "exclusion", "=", "None", ")", ":", "result", "=", "[", "]", "exclusion", "=", "[", "'__self'", "]", "if", "exclusion", "is", "None", "else", "exclusion", "for", "key", ",", "value", "in", "di...	28.35	16.95
def get_plot_data(self): """ Generates the JSON report to plot the gene boxes Following the convention of the reports platform, this method returns a list of JSON/dict objects with the information about each entry in the abricate file. The information contained in this JSON is:: ...	[ "def", "get_plot_data", "(", "self", ")", ":", "json_dic", "=", "{", "\"plotData\"", ":", "[", "]", "}", "sample_dic", "=", "{", "}", "sample_assembly_map", "=", "{", "}", "for", "entry", "in", "self", ".", "storage", ".", "values", "(", ")", ":", "s...	34.090909	20.015152
def get_user(self, username): """Gest a specific user""" ret = {} tmp = self._get_user(self._byte_p2(username), ALL_ATTRS) if tmp is None: raise UserDoesntExist(username, self.backend_name) attrs_tmp = tmp[1] for attr in attrs_tmp: value_tmp = attr...	[ "def", "get_user", "(", "self", ",", "username", ")", ":", "ret", "=", "{", "}", "tmp", "=", "self", ".", "_get_user", "(", "self", ".", "_byte_p2", "(", "username", ")", ",", "ALL_ATTRS", ")", "if", "tmp", "is", "None", ":", "raise", "UserDoesntExis...	33.571429	12.571429
def set_rgbmap(self, rgbmap): """Set RGB map object used by this instance. It controls how the values in the image are mapped to color. Parameters ---------- rgbmap : `~ginga.RGBMap.RGBMapper` RGB map. """ self.rgbmap = rgbmap t_ = rgbmap.get...	[ "def", "set_rgbmap", "(", "self", ",", "rgbmap", ")", ":", "self", ".", "rgbmap", "=", "rgbmap", "t_", "=", "rgbmap", ".", "get_settings", "(", ")", "t_", ".", "share_settings", "(", "self", ".", "t_", ",", "keylist", "=", "rgbmap", ".", "settings_keys...	31.133333	16.8
def unlock(name, zk_hosts=None, # in case you need to unlock without having run lock (failed execution for example) identifier=None, max_concurrency=1, ephemeral_lease=False, profile=None, scheme=None, username=None, password=None,...	[ "def", "unlock", "(", "name", ",", "zk_hosts", "=", "None", ",", "# in case you need to unlock without having run lock (failed execution for example)", "identifier", "=", "None", ",", "max_concurrency", "=", "1", ",", "ephemeral_lease", "=", "False", ",", "profile", "="...	33.609756	23.95122
def set_package_name(self, package_name): ''' Set package_name >>> docwriter = ApiDocWriter('sphinx') >>> import sphinx >>> docwriter.root_path == sphinx.__path__[0] True >>> docwriter.package_name = 'docutils' >>> import docutils >>> docwriter.root_path ...	[ "def", "set_package_name", "(", "self", ",", "package_name", ")", ":", "# It's also possible to imagine caching the module parsing here", "self", ".", "_package_name", "=", "package_name", "root_module", "=", "self", ".", "_import", "(", "package_name", ")", "self", "."...	35.352941	15.352941
def build_and_train(iterations, log_stride, test=False): """Construct the data, model, loss and optimizer then train.""" # Test mode settings. batch_size = 2 if test else FLAGS.batch_size num_mems = 2 if test else FLAGS.num_mems num_heads = 1 if test else FLAGS.num_mems num_blocks = 1 if test else FLAGS.nu...	[ "def", "build_and_train", "(", "iterations", ",", "log_stride", ",", "test", "=", "False", ")", ":", "# Test mode settings.", "batch_size", "=", "2", "if", "test", "else", "FLAGS", ".", "batch_size", "num_mems", "=", "2", "if", "test", "else", "FLAGS", ".", ...	41.135593	17.847458
def image_single_point_source(self, image_model_class, kwargs_lens, kwargs_source, kwargs_lens_light, kwargs_ps): """ return model without including the point source contributions as a list (for each point source individually) :param image_model_class: ImageMode...	[ "def", "image_single_point_source", "(", "self", ",", "image_model_class", ",", "kwargs_lens", ",", "kwargs_source", ",", "kwargs_lens_light", ",", "kwargs_ps", ")", ":", "# reconstructed model with given psf", "model", ",", "error_map", ",", "cov_param", ",", "param", ...	60	24.416667
def op_right(op): """ Returns a type instance method for the given operator, applied when the instance appears on the right side of the expression. """ def method(self, other): return op(value_left(self, other), value_right(self, other)) return method	[ "def", "op_right", "(", "op", ")", ":", "def", "method", "(", "self", ",", "other", ")", ":", "return", "op", "(", "value_left", "(", "self", ",", "other", ")", ",", "value_right", "(", "self", ",", "other", ")", ")", "return", "method" ]	34.5	17.25
def read_lines_from_file(file_path: str) -> List[str]: """ Read text lines from a file """ # check if the file exists? with open(file_path) as csv_file: content = csv_file.readlines() return content	[ "def", "read_lines_from_file", "(", "file_path", ":", "str", ")", "->", "List", "[", "str", "]", ":", "# check if the file exists?", "with", "open", "(", "file_path", ")", "as", "csv_file", ":", "content", "=", "csv_file", ".", "readlines", "(", ")", "return...	36.166667	8.333333
def get_bank_hierarchy_design_session(self, proxy): """Gets the session designing bank hierarchies. arg: proxy (osid.proxy.Proxy): a proxy return: (osid.assessment.BankHierarchyDesignSession) - a ``BankHierarchySession`` raise: NullArgument - ``proxy`` is ``null`` ...	[ "def", "get_bank_hierarchy_design_session", "(", "self", ",", "proxy", ")", ":", "if", "not", "self", ".", "supports_bank_hierarchy_design", "(", ")", ":", "raise", "errors", ".", "Unimplemented", "(", ")", "# pylint: disable=no-member", "return", "sessions", ".", ...	44.944444	17.055556
def hierarchyLookup(self, record): """ Looks up additional hierarchy information for the inputed record. :param record \| <orb.Table> :return (<subclass of orb.Table> \|\| None, <str> column) """ def _get_lookup(cls): if cls in...	[ "def", "hierarchyLookup", "(", "self", ",", "record", ")", ":", "def", "_get_lookup", "(", "cls", ")", ":", "if", "cls", "in", "self", ".", "_hierarchyLookup", ":", "return", "self", ".", "_hierarchyLookup", "[", "cls", "]", "for", "base", "in", "cls", ...	30.928571	14.642857
def _delete_state(self, activity, agent, state_id=None, registration=None, etag=None): """Private method to delete a specified state from the LRS :param activity: Activity object of state to be deleted :type activity: :class:`tincan.activity.Activity` :param agent: Agent object of state...	[ "def", "_delete_state", "(", "self", ",", "activity", ",", "agent", ",", "state_id", "=", "None", ",", "registration", "=", "None", ",", "etag", "=", "None", ")", ":", "if", "not", "isinstance", "(", "activity", ",", "Activity", ")", ":", "activity", "...	35.302326	17.232558
def check_stripe_api_host(app_configs=None, **kwargs): """ Check that STRIPE_API_HOST is not being used in production. """ from django.conf import settings messages = [] if not settings.DEBUG and hasattr(settings, "STRIPE_API_HOST"): messages.append( checks.Warning( "STRIPE_API_HOST should not be set i...	[ "def", "check_stripe_api_host", "(", "app_configs", "=", "None", ",", "", "", "kwargs", ")", ":", "from", "django", ".", "conf", "import", "settings", "messages", "=", "[", "]", "if", "not", "settings", ".", "DEBUG", "and", "hasattr", "(", "settings", ...	25.722222	24.277778
def get_projection(self, axis): """ Return the projection of this vector onto the given axis. The axis does not need to be normalized. """ scale = axis.dot(self) / axis.dot(axis) return axis * scale	[ "def", "get_projection", "(", "self", ",", "axis", ")", ":", "scale", "=", "axis", ".", "dot", "(", "self", ")", "/", "axis", ".", "dot", "(", "axis", ")", "return", "axis", "*", "scale" ]	45.6	5.8
def _validate_markdown(self, expfile): '''ensure that fields are present in markdown file''' try: import yaml except: bot.error('Python yaml is required for testing yml/markdown files.') sys.exit(1) self.metadata = {} uid = os.path.basename(e...	[ "def", "_validate_markdown", "(", "self", ",", "expfile", ")", ":", "try", ":", "import", "yaml", "except", ":", "bot", ".", "error", "(", "'Python yaml is required for testing yml/markdown files.'", ")", "sys", ".", "exit", "(", "1", ")", "self", ".", "metada...	38.075	19.925
def pmll(self,args,*kwargs): """ NAME: pmll PURPOSE: return proper motion in Galactic longitude (in mas/yr) INPUT: t - (optional) time at which to get pmll (can be Quantity) v obs=[X,Y,Z,vx,vy,vz] - (optional) position and velocity of ob...	[ "def", "pmll", "(", "self", ",", "", "args", ",", "", "", "kwargs", ")", ":", "out", "=", "self", ".", "_orb", ".", "pmll", "(", "", "args", ",", "", "", "kwargs", ")", "if", "len", "(", "out", ")", "==", "1", ":", "return", "out", "[...	28.837838	28.783784
def generate_surface_vectors(self, film_millers, substrate_millers): """ Generates the film/substrate slab combinations for a set of given miller indicies Args: film_millers(array): all miller indices to generate slabs for film substrate_millers(a...	[ "def", "generate_surface_vectors", "(", "self", ",", "film_millers", ",", "substrate_millers", ")", ":", "vector_sets", "=", "[", "]", "for", "f", "in", "film_millers", ":", "film_slab", "=", "SlabGenerator", "(", "self", ".", "film", ",", "f", ",", "20", ...	39.931034	23.724138
def set_config_files_(self, *config_files): """Set the list of config files. Args: config_files (pathlike): path of config files, given in the order of reading. """ self._config_files = tuple(pathlib.Path(path) for path in config_files)	[ "def", "set_config_files_", "(", "self", ",", "*", "config_files", ")", ":", "self", ".", "_config_files", "=", "tuple", "(", "pathlib", ".", "Path", "(", "path", ")", "for", "path", "in", "config_files", ")" ]	36.25	19.875
def mapping_get(index, doc_type, hosts=None, profile=None): ''' Retrieve mapping definition of index or index/type index Index for the mapping doc_type Name of the document type CLI example:: salt myminion elasticsearch.mapping_get testindex user ''' es = _get_inst...	[ "def", "mapping_get", "(", "index", ",", "doc_type", ",", "hosts", "=", "None", ",", "profile", "=", "None", ")", ":", "es", "=", "_get_instance", "(", "hosts", ",", "profile", ")", "try", ":", "return", "es", ".", "indices", ".", "get_mapping", "(", ...	31.666667	27.952381
def reload_context(self, es_based, **kwargs): """ Reload `self.context` object into a DB or ES object. A reload is performed by getting the object ID from :kwargs: and then getting a context key item from the new instance of `self._factory` which is an ACL class used by the current view...	[ "def", "reload_context", "(", "self", ",", "es_based", ",", "", "", "kwargs", ")", ":", "from", ".", "acl", "import", "BaseACL", "key", "=", "self", ".", "_get_context_key", "(", "", "", "kwargs", ")", "kwargs", "=", "{", "'request'", ":", "self", ...	39.125	18.5
def initialize(self, conf, ctx): """Initialization steps: 1. Get :func:`~birding.search.search_manager_from_config`. 2. Prepare to track searched terms as to avoid redundant searches. """ self.manager = get_search_manager() config = get_config()['TwitterSearchBolt'] ...	[ "def", "initialize", "(", "self", ",", "conf", ",", "ctx", ")", ":", "self", ".", "manager", "=", "get_search_manager", "(", ")", "config", "=", "get_config", "(", ")", "[", "'TwitterSearchBolt'", "]", "self", ".", "term_shelf", "=", "shelf_from_config", "...	39.888889	14.666667
def _handle_compound(self, node, scope, ctxt, stream): """Handle Compound nodes :node: TODO :scope: TODO :ctxt: TODO :stream: TODO :returns: TODO """ self._dlog("handling compound statement") #scope.push() try: for child in n...	[ "def", "_handle_compound", "(", "self", ",", "node", ",", "scope", ",", "ctxt", ",", "stream", ")", ":", "self", ".", "_dlog", "(", "\"handling compound statement\"", ")", "#scope.push()", "try", ":", "for", "child", "in", "node", ".", "children", "(", ")"...	25.272727	20.590909
def include_feature(self, name): """Request inclusion of feature named 'name'""" if self.feature_is_included(name) == 0: descr = self.features[name].description raise DistutilsOptionError( descr + " is required, but was excluded or is not available" )...	[ "def", "include_feature", "(", "self", ",", "name", ")", ":", "if", "self", ".", "feature_is_included", "(", "name", ")", "==", "0", ":", "descr", "=", "self", ".", "features", "[", "name", "]", ".", "description", "raise", "DistutilsOptionError", "(", "...	39.1	14
def transloadsForPeer(self, peer): """ Returns an iterator of transloads that apply to a particular peer. """ for tl in self.transloads.itervalues(): if peer in tl.peers: yield tl	[ "def", "transloadsForPeer", "(", "self", ",", "peer", ")", ":", "for", "tl", "in", "self", ".", "transloads", ".", "itervalues", "(", ")", ":", "if", "peer", "in", "tl", ".", "peers", ":", "yield", "tl" ]	33.285714	10.142857
def getslide(self,slide_num): """ Return the triggers with a specific slide number. @param slide_num: the slide number to recover (contained in the event_id) """ slideTrigs = self.copy() slideTrigs.extend(row for row in self if row.get_slide_number() == slide_num) return slideTrigs	[ "def", "getslide", "(", "self", ",", "slide_num", ")", ":", "slideTrigs", "=", "self", ".", "copy", "(", ")", "slideTrigs", ".", "extend", "(", "row", "for", "row", "in", "self", "if", "row", ".", "get_slide_number", "(", ")", "==", "slide_num", ")", ...	36.125	16.375
def crypto_scalarmult_base(n): """ Computes and returns the scalar product of a standard group element and an integer ``n``. :param n: bytes :rtype: bytes """ q = ffi.new("unsigned char[]", crypto_scalarmult_BYTES) rc = lib.crypto_scalarmult_base(q, n) ensure(rc == 0, 'U...	[ "def", "crypto_scalarmult_base", "(", "n", ")", ":", "q", "=", "ffi", ".", "new", "(", "\"unsigned char[]\"", ",", "crypto_scalarmult_BYTES", ")", "rc", "=", "lib", ".", "crypto_scalarmult_base", "(", "q", ",", "n", ")", "ensure", "(", "rc", "==", "0", "...	26.6875	18.6875
def parse_reports(self): """ Find bamtools stats reports and parse their data """ # Set up vars self.bamtools_stats_data = dict() regexes = { 'total_reads': r"Total reads:\s(\d+)", 'mapped_reads': r"Mapped reads:\s(\d+)", 'mapped_reads_pct': r"Mapped reads:\s*\d+\s+\(([\d\.]+)...	[ "def", "parse_reports", "(", "self", ")", ":", "# Set up vars", "self", ".", "bamtools_stats_data", "=", "dict", "(", ")", "regexes", "=", "{", "'total_reads'", ":", "r\"Total reads:\\s(\\d+)\"", ",", "'mapped_reads'", ":", "r\"Mapped reads:\\s(\\d+)\"", ",", "'ma...	42.62037	22.583333
def _create_session(self): """ Creates a fresh session with no/default headers and proxies """ logger.debug("Create new phantomjs web driver") self.driver = webdriver.PhantomJS(desired_capabilities=self.dcap, **self.driver_args) s...	[ "def", "_create_session", "(", "self", ")", ":", "logger", ".", "debug", "(", "\"Create new phantomjs web driver\"", ")", "self", ".", "driver", "=", "webdriver", ".", "PhantomJS", "(", "desired_capabilities", "=", "self", ".", "dcap", ",", "", "", "self", ...	44.111111	13.666667
def add(self, args, kwargs): """ add(other, rho=0, inplace=True) Adds an other* number instance. The correlation coefficient rho can be configured per uncertainty when passed as a dict. When inplace is False, a new instance is returned. """ return self._apply(operator.a...	[ "def", "add", "(", "self", ",", "", "args", ",", "", "", "kwargs", ")", ":", "return", "self", ".", "_apply", "(", "operator", ".", "add", ",", "", "args", ",", "", "", "kwargs", ")" ]	55.833333	23.166667
def get_fragment(self, list_of_indextuples, give_only_index=False, use_lookup=None): """Get the indices of the atoms in a fragment. The list_of_indextuples contains all bondings from the molecule to the fragment. ``[(1,3), (2,4)]`` means for example that the fragmen...	[ "def", "get_fragment", "(", "self", ",", "list_of_indextuples", ",", "give_only_index", "=", "False", ",", "use_lookup", "=", "None", ")", ":", "if", "use_lookup", "is", "None", ":", "use_lookup", "=", "settings", "[", "'defaults'", "]", "[", "'use_lookup'", ...	44.878788	21.757576
def _set_response_handlers(self, stanza, res_handler, err_handler, timeout_handler = None, timeout = None): """Same as `set_response_handlers` but assume `self.lock` is acquired.""" # pylint: disable-msg=R0913 self.fix_out_stanza(stanza) to_jid = s...	[ "def", "_set_response_handlers", "(", "self", ",", "stanza", ",", "res_handler", ",", "err_handler", ",", "timeout_handler", "=", "None", ",", "timeout", "=", "None", ")", ":", "# pylint: disable-msg=R0913", "self", ".", "fix_out_stanza", "(", "stanza", ")", "to...	46.086957	12.043478
def asr_breaking(self, tol_eigendisplacements=1e-5): """ Returns the breaking of the acoustic sum rule for the three acoustic modes, if Gamma is present. None otherwise. If eigendisplacements are available they are used to determine the acoustic modes: selects the bands correspon...	[ "def", "asr_breaking", "(", "self", ",", "tol_eigendisplacements", "=", "1e-5", ")", ":", "for", "i", "in", "range", "(", "self", ".", "nb_qpoints", ")", ":", "if", "np", ".", "allclose", "(", "self", ".", "qpoints", "[", "i", "]", ".", "frac_coords", ...	47.62069	21.758621

def first_image(self): """Ready-only attribute that provides the value of the first non-none image that's not the thumbnail override field. """ # loop through image fields and grab the first non-none one for model_field in self._meta.fields: if isinstance(model_field,...

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def set(self, tclass, tnum, tlvt=0, tdata=''): """set the values of the tag.""" if not isinstance(tdata, str): raise TypeError("tag data must be str") self.tagClass = tclass self.tagNumber = tnum self.tagLVT = tlvt self.tagData = tdata

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def warning(self, message, print_location=True): """Displays warning message. Uses exshared for current location of parsing""" msg = "Warning" if print_location and (exshared.location != None): wline = lineno(exshared.location, exshared.text) wcol = col(exshared.loca...

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def main(): "Boots up the command line tool" logging.captureWarnings(True) args = build_parser().parse_args() # Configure logging args.setup_logging(args) # Dispatch into the appropriate subcommand function. try: return args.func(args) except SystemExit: raise except:...

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def stubs_clustering(network,use_reduced_coordinates=True, line_length_factor=1.0): """Cluster network by reducing stubs and stubby trees (i.e. sequentially reducing dead-ends). Parameters ---------- network : pypsa.Network use_reduced_coordinates : boolean If True, do not average clust...

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def subset_by_supported(input_file, get_coords, calls_by_name, work_dir, data, headers=("#",)): """Limit CNVkit input to calls with support from another caller. get_coords is a function that return chrom, start, end from a line of the input_file, allowing handling of multiple input ...

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def datasets(self) -> tuple: """Datasets.""" return tuple(v for _, v in self.items() if isinstance(v, h5py.Dataset))

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def MAU(self): '''Result of preconditioned operator to deflation space, i.e., :math:`MM_lAM_rU`.''' if self._MAU is None: self._MAU = self.linear_system.M * self.AU return self._MAU

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def dump_state(self): """Dump the current state of this emulated tile as a dictionary. This function just dumps the status of the config variables. It is designed to be called in a chained fashion to serialize the complete state of a tile subclass. Returns: dict: The curre...

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def _extract_shifted_mean_gauss(image, mask = slice(None), offset = None, sigma = 1, voxelspacing = None): """ Internal, single-image version of `shifted_mean_gauss`. """ # set voxel spacing if voxelspacing is None: voxelspacing = [1.] * image.ndim # set offset if offset is None:...

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def get_smokedetector_by_name(self, name): """Retrieves a smokedetector object by its name :param name: The name of the smokedetector to return :return: A smokedetector object """ return next((smokedetector for smokedetector in self.smokedetectors if smokede...

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def _delete_os_nwk(self, tenant_id, tenant_name, direc, is_fw_virt=False): """Delete the network created in Openstack. Function to delete Openstack network, It also releases the associated segmentation, VLAN and subnets. """ serv_obj = self.get_service_obj(tenant_id) fw_...

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def agents(status, all): ''' List and manage agents. (admin privilege required) ''' fields = [ ('ID', 'id'), ('Status', 'status'), ('Region', 'region'), ('First Contact', 'first_contact'), ('CPU Usage (%)', 'cpu_cur_pct'), ('Used Memory (MiB)', 'mem_cu...

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def save(d, output_file, indent=4, spacer=" ", quote='"', newlinechar="\n", end_comment=False, **kwargs): """ Write a dictionary to an output Mapfile on disk Parameters ---------- d: dict A Python dictionary based on the the mappyfile schema output_file: string The output filen...

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def compactor(conf): """ The compactor daemon. This fuction watches the sorted set containing bucket keys that need to be compacted, performing the necessary compaction. :param conf: A turnstile.config.Config instance containing the configuration for the compactor daemon. Note th...

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def mutex_opts(dict,ex_op): """Check for presence of mutually exclusive keys in a dict. Call: mutex_opts(dict,[[op1a,op1b],[op2a,op2b]...]""" for op1,op2 in ex_op: if op1 in dict and op2 in dict: raise ValueError,'\n*** ERROR in Arguments *** '\ 'Options '+op1+' and '+...

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def Collect(self, top_frame): """Collects call stack, local variables and objects. Starts collection from the specified frame. We don't start from the top frame to exclude the frames due to debugger. Updates the content of self.breakpoint. Args: top_frame: top frame to start data collection....

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def allow_rwe(self, name): """Allow all privileges for a particular name group (user, group, other).""" assert name in PERMISSIONS.keys() os.chmod(self.file_path, PERMISSIONS[name]['all'])

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def stop(self, message): """ Manually stops timer with the message. :param message: The display message. """ self._stop = time.clock() VSGLogger.info("{0:<20} - Finished [{1}s]".format(message, self.pprint(self._stop - self._start)))

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def update_linode(linode_id, update_args=None): ''' Updates a Linode's properties. linode_id The ID of the Linode to shutdown. Required. update_args The args to update the Linode with. Must be in dictionary form. ''' update_args.update({'LinodeID': linode_id}) result = _qu...

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def getCandScoresMap(self, profile): """ Returns a dictionary that associates integer representations of each candidate with their Copeland score. :ivar Profile profile: A Profile object that represents an election profile. """ # Currently, we expect the profile to cont...

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def onpress(self, event): """ Reacts to key commands :param event: a keyboard event :return: if 'c' is pressed, clear all region patches """ if event.key == 'c': # clears all the contours for patch in self.region_patches: patch.remove() ...

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def add_tokens_for_group(self, with_pass=False): """Add the tokens for the group signature""" kls = self.groups.super_kls name = self.groups.kls_name # Reset indentation to beginning and add signature self.reset_indentation('') self.result.extend(self.tokens.make_describ...

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def get_items_batch(self, item_request_data, project=None): """GetItemsBatch. Post for retrieving a set of items given a list of paths or a long path. Allows for specifying the recursionLevel and version descriptors for each path. :param :class:`<TfvcItemRequestData> <azure.devops.v5_0.tfvc.mode...

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def _parse_view_results(self, rows, factory, options): ''' rows here should be a list of tuples: - (key, value) for reduce views - (key, value, id) for nonreduce views without include docs - (key, value, id, doc) for nonreduce with with include docs ''' kwargs ...

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def _MergeSameId(self): """Tries to merge entities based on their ids. This tries to merge only the entities from the old and new schedules which have the same id. These are added into the merged schedule. Entities which do not merge or do not have the same id as another entity in the other schedul...

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def from_dict(cls, d, ignore=()): """Create an instance from a serialized version of cls Args: d(dict): Endpoints of cls to set ignore(tuple): Keys to ignore Returns: Instance of this class """ filtered = {} for k, v in d.items(): ...

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def FromString(self, string): """Parse a bool from a string.""" if string.lower() in ("false", "no", "n"): return False if string.lower() in ("true", "yes", "y"): return True raise TypeValueError("%s is not recognized as a boolean value." % string)

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def tox_addoption(parser): """Add arguments and needed monkeypatches.""" parser.add_argument( '--travis-after', dest='travis_after', action='store_true', help='Exit successfully after all Travis jobs complete successfully.') if 'TRAVIS' in os.environ: pypy_version_monkeypatch() ...

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def reference(self, t, i, in_group=False): """Handle references.""" current = [] if not in_group and t == "m": current.append(self._re_start_wb) elif not in_group and t == "M": current.append(self._re_end_wb) elif not in_group and t == "R": c...

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def _segment(cls, segment): """ Returns a property capable of setting and getting a segment. """ return property( fget=lambda x: cls._get_segment(x, segment), fset=lambda x, v: cls._set_segment(x, segment, v), )

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def process_command(command: CommandInput, matrix: VarMatrix) -> List[Command]: """Generate all combinations of commands given a variable matrix. Processes the commands to be sequences of strings. """ assert command is not None if isinstance(command, str): command_list = [Command(command, ...

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37.916667

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def cofold(self, strand1, strand2, temp=37.0, dangles=2, nolp=False, nogu=False, noclosinggu=False, constraints=None, canonicalbponly=False, partition=-1, pfscale=None, gquad=False): '''Run the RNAcofold command and retrieve the result in a dictionary. :param strand1: Stra...

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45.349593

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def reffinder(sectionObj): """ add reference indeces to sectionobj['references'] :param sectionObj :return: a section obj w references: field """ text = sectionObj['text'] reftags = [x for x in refTagRegEx.finditer(text)] if reftags: references = [] for tag in reftags: ...

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26

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def drop_first(count): """ Assumes an iterable on the input, returns an iterable with identical items except for the first `count`. >>> range(10) > drop_first(5) | tuple (5, 6, 7, 8, 9) """ def _drop_first(iterable): g = (x for x in range(1, count + 1)) return dropwhile( ...

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34.153846

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def _parse_publisher(details): """ Parse publisher of the book. Args: details (obj): HTMLElement containing slice of the page with details. Returns: str/None: Publisher's name as string or None if not found. """ publisher = _get_td_or_none( details, "ctl00_Conte...

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22.115385

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def set_background(self, background): """ Set the background color of the widget. """ scene = self.scene scene.setBackgroundBrush(QColor.fromRgba(background.argb))

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31.833333

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def diffplot(self, f, delay=1, lfilter=None, **kargs): """diffplot(f, delay=1, lfilter=None) Applies a function to couples (l[i],l[i+delay]) A list of matplotlib.lines.Line2D is returned. """ # Get the list of packets if lfilter is None: lst_pkts = [f(self.r...

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32.923077

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def _get_button_attrs(self, tool): """ Get the HTML attributes associated with a tool. There are some standard attributes (class and title) that the template will always want. Any number of additional attributes can be specified and passed on. This is kinda awkward and due for a...

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39.3

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def build_parameter(field: Field) -> Mapping[str, Any]: """ Build JSON parameter from a marshmallow field. """ builder = Parameters() return builder.build(field)

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25.142857

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def calc_registration(preregistration_map, anchors, max_steps=2000, max_step_size=0.05, method='random'): ''' calc_registration is a calculator that creates the registration coordinates. ''' # if max steps is a tuple (max, stride) then a trajectory is saved into # the registere...

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40.333333

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def peripheral_didDiscoverCharacteristicsForService_error_(self, peripheral, service, error): """Called when characteristics are discovered for a service.""" logger.debug('peripheral_didDiscoverCharacteristicsForService_error called') # Stop if there was some kind of error. if error is n...

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57.722222

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def clone(self, config, **kwargs): """Make a clone of this analysis instance.""" gta = GTAnalysis(config, **kwargs) gta._roi = copy.deepcopy(self.roi) return gta

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37.8

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def serialize(ty, *values, **kwargs): """ Serialize value using type specification in ty. ABI.serialize('int256', 1000) ABI.serialize('(int, int256)', 1000, 2000) """ try: parsed_ty = abitypes.parse(ty) except Exception as e: # Catch and re...

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38.44

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def _c3_merge(sequences): # noqa """Merges MROs in *sequences* to a single MRO using the C3 algorithm. Adapted from http://www.python.org/download/releases/2.3/mro/. """ result = [] while True: sequences = [s for s in sequences if s] # purge empty sequences if not sequences: ...

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34

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def list_certs(self, filters=None): """Retrieve loaded certificates. :param filters: retrieve only matching certificates (optional) :type filters: dict :return: list of installed trap, drop and bypass policies :rtype: list """ _, cert_list = self.handler.streamed...

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39.272727

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def formatter(self, value): ''' Format a enumerate value to enumerate names if possible. Used to generate human readable dump result. ''' if not self._bitwise: n = self.getName(value) if n is None: return value else: ...

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def is_valid_index(self, code): """ returns: True | Flase , based on whether code is valid """ index_list = self.get_index_list() return True if code.upper() in index_list else False

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36.166667

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def make_linear_workflow(*tasks, **kwargs): """Factory method for creating linear workflows. :param tasks: EOTask's t1,t2,...,tk with dependencies t1->t2->...->tk :param kwargs: Optional keyword arguments (such as workflow name) forwarded to the constructor :return: A new EO workfl...

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48.333333

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def _step(vertices, d_limit, temperature, placements, l2v, v2n, vertices_resources, fixed_vertices, machine, has_wrap_around_links, random): """Attempt a single swap operation: the kernel of the Simulated Annealing algorithm. Parameters ---------- vertices : [vertex, ...] ...

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43.692913

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def extract_common_fields(self, data): """Extract fields from a basic user query.""" email = None for curr_email in data.get("emails", []): email = email or curr_email.get("email") if curr_email.get("verified", False) and \ curr_email.get("primary", Fa...

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36.235294

12.529412

def operator_complexity(self): """Operator complexity of this multigrid hierarchy. Defined as: Number of nonzeros in the matrix on all levels / Number of nonzeros in the matrix on the finest level """ return sum([level.A.nnz for level in self.levels]) /\ ...

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34.3

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def sample_top(a=None, top_k=10): """Sample from ``top_k`` probabilities. Parameters ---------- a : list of float List of probabilities. top_k : int Number of candidates to be considered. """ if a is None: a = [] idx = np.argpartition(a, -top_k)[-top_k:] pr...

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22.45

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def transition_retry(self, pipeline_key, retry_message): """Marks the given pipeline as requiring another retry. Does nothing if all attempts have been exceeded. Args: pipeline_key: db.Key of the _PipelineRecord that needs to be retried. retry_message: User-supplied message indicating the reas...

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43.301587

19.333333

def _erc_weights_ccd(x0, cov, b, maximum_iterations, tolerance): """ Calculates the equal risk contribution / risk parity weights given a DataFrame of returns. Args: * x0 (np.array): Starting asset weights. ...

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30.508475

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def www_authenticate(self): """The `WWW-Authenticate` header in a parsed form.""" def on_update(www_auth): if not www_auth and 'www-authenticate' in self.headers: del self.headers['www-authenticate'] elif www_auth: self.headers['WWW-Authenticate'] ...

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50.222222

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def match_in_kwargs(self, match_args, kwargs): """Matches against kwargs.""" for match, default in match_args: names = get_match_names(match) if names: tempvar = self.get_temp_var() self.add_def( tempvar + " = " ...

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42.333333

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def response_class(self, cls): """ Override the default wrapper used for the response. """ s = self._clone() s._response_class = cls return s

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26.142857

11

def make_all_uppercase( lst: Union[list, tuple, str, set] ) -> Union[list, tuple, str, set]: """Make all characters uppercase. It supports characters in a (mix of) list, tuple, set or string. The return value is of the same type of the input value. """ if not is...

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31.242424

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def reset_window_layout(self): """Reset window layout to default""" answer = QMessageBox.warning(self, _("Warning"), _("Window layout will be reset to default settings: " "this affects window position, size and dockwidgets.\n" "Do y...

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52.777778

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def meraculous_runner(self): """ Check to make sure that the allAssembliesDir has been created, if not, make it. This will only execute for the first time an assembly has been run in this directory. Run the directory from allAssembliesDir. The self.callString instance at...

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37.851852

20.518519

def is_complex_floating_dtype(dtype): """Return ``True`` if ``dtype`` is a complex floating point type.""" dtype = np.dtype(dtype) return np.issubsctype(getattr(dtype, 'base', None), np.complexfloating)

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52.75

12.75

def team_present( name, description=None, repo_names=None, privacy='secret', permission='pull', members=None, enforce_mfa=False, no_mfa_grace_seconds=0, profile="github", **kwargs): ''' Ensure a team is present name Thi...

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40.246154

22.984615

def plot_all(self, t=0, f_start=None, f_stop=None, logged=False, if_id=0, kurtosis=True, **kwargs): """ Plot waterfall of data as well as spectrum; also, placeholder to make even more complicated plots in the future. Args: f_start (float): start frequency, in MHz f_stop (float):...

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39.635036

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def add_constraints(self): """ Set the base constraints on the relation query. :rtype: None """ if self._constraints: foreign_key = getattr(self._parent, self._foreign_key, None) if foreign_key is None: self._query = None else:...

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30.375

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def run_model(self, times=None, weather=None): """ Run the model. Parameters ---------- times : None or DatetimeIndex, default None Times at which to evaluate the model. Can be None if attribute `times` is already set. weather : None or DataFrame,...

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32.944444

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def generate_confirmation_key(identity_secret, tag, timestamp): """Generate confirmation key for trades. Can only be used once. :param identity_secret: authenticator identity secret :type identity_secret: bytes :param tag: tag identifies what the request, see list below :type tag: str :param ti...

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35.409091

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def nested_dict_to_list(path, dic, exclusion=None): """ Transform nested dict to list """ result = [] exclusion = ['__self'] if exclusion is None else exclusion for key, value in dic.items(): if not any([exclude in key for exclude in exclusion]): if isinstance(value, dict):...

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28.35

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def get_plot_data(self): """ Generates the JSON report to plot the gene boxes Following the convention of the reports platform, this method returns a list of JSON/dict objects with the information about each entry in the abricate file. The information contained in this JSON is:: ...

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34.090909

20.015152

def get_user(self, username): """Gest a specific user""" ret = {} tmp = self._get_user(self._byte_p2(username), ALL_ATTRS) if tmp is None: raise UserDoesntExist(username, self.backend_name) attrs_tmp = tmp[1] for attr in attrs_tmp: value_tmp = attr...

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33.571429

12.571429

def set_rgbmap(self, rgbmap): """Set RGB map object used by this instance. It controls how the values in the image are mapped to color. Parameters ---------- rgbmap : `~ginga.RGBMap.RGBMapper` RGB map. """ self.rgbmap = rgbmap t_ = rgbmap.get...

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31.133333

16.8

def unlock(name, zk_hosts=None, # in case you need to unlock without having run lock (failed execution for example) identifier=None, max_concurrency=1, ephemeral_lease=False, profile=None, scheme=None, username=None, password=None,...

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33.609756

23.95122

def set_package_name(self, package_name): ''' Set package_name >>> docwriter = ApiDocWriter('sphinx') >>> import sphinx >>> docwriter.root_path == sphinx.__path__[0] True >>> docwriter.package_name = 'docutils' >>> import docutils >>> docwriter.root_path ...

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35.352941

15.352941

def build_and_train(iterations, log_stride, test=False): """Construct the data, model, loss and optimizer then train.""" # Test mode settings. batch_size = 2 if test else FLAGS.batch_size num_mems = 2 if test else FLAGS.num_mems num_heads = 1 if test else FLAGS.num_mems num_blocks = 1 if test else FLAGS.nu...

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41.135593

17.847458

def image_single_point_source(self, image_model_class, kwargs_lens, kwargs_source, kwargs_lens_light, kwargs_ps): """ return model without including the point source contributions as a list (for each point source individually) :param image_model_class: ImageMode...

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60

24.416667

def op_right(op): """ Returns a type instance method for the given operator, applied when the instance appears on the right side of the expression. """ def method(self, other): return op(value_left(self, other), value_right(self, other)) return method

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34.5

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def read_lines_from_file(file_path: str) -> List[str]: """ Read text lines from a file """ # check if the file exists? with open(file_path) as csv_file: content = csv_file.readlines() return content

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def get_bank_hierarchy_design_session(self, proxy): """Gets the session designing bank hierarchies. arg: proxy (osid.proxy.Proxy): a proxy return: (osid.assessment.BankHierarchyDesignSession) - a ``BankHierarchySession`` raise: NullArgument - ``proxy`` is ``null`` ...

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def hierarchyLookup(self, record): """ Looks up additional hierarchy information for the inputed record. :param record | <orb.Table> :return (<subclass of orb.Table> || None, <str> column) """ def _get_lookup(cls): if cls in...

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def _delete_state(self, activity, agent, state_id=None, registration=None, etag=None): """Private method to delete a specified state from the LRS :param activity: Activity object of state to be deleted :type activity: :class:`tincan.activity.Activity` :param agent: Agent object of state...

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def check_stripe_api_host(app_configs=None, **kwargs): """ Check that STRIPE_API_HOST is not being used in production. """ from django.conf import settings messages = [] if not settings.DEBUG and hasattr(settings, "STRIPE_API_HOST"): messages.append( checks.Warning( "STRIPE_API_HOST should not be set i...

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def get_projection(self, axis): """ Return the projection of this vector onto the given axis. The axis does not need to be normalized. """ scale = axis.dot(self) / axis.dot(axis) return axis * scale

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def _validate_markdown(self, expfile): '''ensure that fields are present in markdown file''' try: import yaml except: bot.error('Python yaml is required for testing yml/markdown files.') sys.exit(1) self.metadata = {} uid = os.path.basename(e...

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def pmll(self,*args,**kwargs): """ NAME: pmll PURPOSE: return proper motion in Galactic longitude (in mas/yr) INPUT: t - (optional) time at which to get pmll (can be Quantity) v obs=[X,Y,Z,vx,vy,vz] - (optional) position and velocity of ob...

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def generate_surface_vectors(self, film_millers, substrate_millers): """ Generates the film/substrate slab combinations for a set of given miller indicies Args: film_millers(array): all miller indices to generate slabs for film substrate_millers(a...

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def set_config_files_(self, *config_files): """Set the list of config files. Args: config_files (pathlike): path of config files, given in the order of reading. """ self._config_files = tuple(pathlib.Path(path) for path in config_files)

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def mapping_get(index, doc_type, hosts=None, profile=None): ''' Retrieve mapping definition of index or index/type index Index for the mapping doc_type Name of the document type CLI example:: salt myminion elasticsearch.mapping_get testindex user ''' es = _get_inst...

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def reload_context(self, es_based, **kwargs): """ Reload `self.context` object into a DB or ES object. A reload is performed by getting the object ID from :kwargs: and then getting a context key item from the new instance of `self._factory` which is an ACL class used by the current view...

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def initialize(self, conf, ctx): """Initialization steps: 1. Get :func:`~birding.search.search_manager_from_config`. 2. Prepare to track searched terms as to avoid redundant searches. """ self.manager = get_search_manager() config = get_config()['TwitterSearchBolt'] ...

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def _handle_compound(self, node, scope, ctxt, stream): """Handle Compound nodes :node: TODO :scope: TODO :ctxt: TODO :stream: TODO :returns: TODO """ self._dlog("handling compound statement") #scope.push() try: for child in n...

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def include_feature(self, name): """Request inclusion of feature named 'name'""" if self.feature_is_included(name) == 0: descr = self.features[name].description raise DistutilsOptionError( descr + " is required, but was excluded or is not available" )...

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def transloadsForPeer(self, peer): """ Returns an iterator of transloads that apply to a particular peer. """ for tl in self.transloads.itervalues(): if peer in tl.peers: yield tl

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def getslide(self,slide_num): """ Return the triggers with a specific slide number. @param slide_num: the slide number to recover (contained in the event_id) """ slideTrigs = self.copy() slideTrigs.extend(row for row in self if row.get_slide_number() == slide_num) return slideTrigs

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def crypto_scalarmult_base(n): """ Computes and returns the scalar product of a standard group element and an integer ``n``. :param n: bytes :rtype: bytes """ q = ffi.new("unsigned char[]", crypto_scalarmult_BYTES) rc = lib.crypto_scalarmult_base(q, n) ensure(rc == 0, 'U...

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def parse_reports(self): """ Find bamtools stats reports and parse their data """ # Set up vars self.bamtools_stats_data = dict() regexes = { 'total_reads': r"Total reads:\s*(\d+)", 'mapped_reads': r"Mapped reads:\s*(\d+)", 'mapped_reads_pct': r"Mapped reads:\s*\d+\s+\(([\d\.]+)...

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def _create_session(self): """ Creates a fresh session with no/default headers and proxies """ logger.debug("Create new phantomjs web driver") self.driver = webdriver.PhantomJS(desired_capabilities=self.dcap, **self.driver_args) s...

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44.111111

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def add(self, *args, **kwargs): """ add(other, rho=0, inplace=True) Adds an *other* number instance. The correlation coefficient *rho* can be configured per uncertainty when passed as a dict. When *inplace* is *False*, a new instance is returned. """ return self._apply(operator.a...

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def get_fragment(self, list_of_indextuples, give_only_index=False, use_lookup=None): """Get the indices of the atoms in a fragment. The list_of_indextuples contains all bondings from the molecule to the fragment. ``[(1,3), (2,4)]`` means for example that the fragmen...

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44.878788

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def _set_response_handlers(self, stanza, res_handler, err_handler, timeout_handler = None, timeout = None): """Same as `set_response_handlers` but assume `self.lock` is acquired.""" # pylint: disable-msg=R0913 self.fix_out_stanza(stanza) to_jid = s...

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def asr_breaking(self, tol_eigendisplacements=1e-5): """ Returns the breaking of the acoustic sum rule for the three acoustic modes, if Gamma is present. None otherwise. If eigendisplacements are available they are used to determine the acoustic modes: selects the bands correspon...

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