kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def query(self, model): '''Return a query for ``model`` when it needs to be indexed. ''' session = self.router.session() fields = tuple((f.name for f in model._meta.scalarfields if f.type == 'text')) qs = session.query(model).load_only(*fields) ...	[ "def", "query", "(", "self", ",", "model", ")", ":", "session", "=", "self", ".", "router", ".", "session", "(", ")", "fields", "=", "tuple", "(", "(", "f", ".", "name", "for", "f", "in", "model", ".", "_meta", ".", "scalarfields", "if", "f", "."...	42.3	15.7
def handle_cable(cable, handler, standalone=True): """\ Emits event from the provided `cable` to the handler. `cable` A cable object. `handler` A ICableHandler instance. `standalone` Indicates if a `start` and `end` event should be issued (default: ``True``). ...	[ "def", "handle_cable", "(", "cable", ",", "handler", ",", "standalone", "=", "True", ")", ":", "def", "datetime", "(", "dt", ")", ":", "date", ",", "time", "=", "dt", ".", "split", "(", "u' '", ")", "if", "len", "(", "time", ")", "==", "5", ":", ...	35.564516	12.516129
def getElementsByAttr(self, attrName, attrValue): ''' getElementsByAttr - Search children of this tag for tags with an attribute name/value pair @param attrName - Attribute name (lowercase) @param attrValue - Attribute value @return - TagCollection of matching e...	[ "def", "getElementsByAttr", "(", "self", ",", "attrName", ",", "attrValue", ")", ":", "elements", "=", "[", "]", "for", "child", "in", "self", ".", "children", ":", "if", "child", ".", "getAttribute", "(", "attrName", ")", "==", "attrValue", ":", "elemen...	39.2	21.333333
def use_args( self, argmap, req=None, locations=core.Parser.DEFAULT_LOCATIONS, as_kwargs=False, validate=None, error_status_code=None, error_headers=None, ): """Decorator that injects parsed arguments into a view callable. Supports the ...	[ "def", "use_args", "(", "self", ",", "argmap", ",", "req", "=", "None", ",", "locations", "=", "core", ".", "Parser", ".", "DEFAULT_LOCATIONS", ",", "as_kwargs", "=", "False", ",", "validate", "=", "None", ",", "error_status_code", "=", "None", ",", "err...	43.311475	19.52459
def process_memory_map(attrs=None, where=None): ''' Return process_memory_map information from osquery CLI Example: .. code-block:: bash salt '*' osquery.process_memory_map ''' if __grains__['os_family'] in ['RedHat', 'Debian']: return _osquery_cmd(table='process_memory_map', ...	[ "def", "process_memory_map", "(", "attrs", "=", "None", ",", "where", "=", "None", ")", ":", "if", "__grains__", "[", "'os_family'", "]", "in", "[", "'RedHat'", ",", "'Debian'", "]", ":", "return", "_osquery_cmd", "(", "table", "=", "'process_memory_map'", ...	32.846154	27.615385
def delete_project(self, project): """ Deletes all versions of a project. First class, maps to Scrapyd's delete project endpoint. """ url = self._build_url(constants.DELETE_PROJECT_ENDPOINT) data = { 'project': project, } self.client.post(url, ...	[ "def", "delete_project", "(", "self", ",", "project", ")", ":", "url", "=", "self", ".", "_build_url", "(", "constants", ".", "DELETE_PROJECT_ENDPOINT", ")", "data", "=", "{", "'project'", ":", "project", ",", "}", "self", ".", "client", ".", "post", "("...	32.909091	16.181818
def transition(self, duration, brightness=None): """ Transition wrapper. Short-circuit transition if necessary. :param duration: Duration of transition. :param brightness: Transition to this brightness. """ if duration == 0: if brightness is not None: ...	[ "def", "transition", "(", "self", ",", "duration", ",", "brightness", "=", "None", ")", ":", "if", "duration", "==", "0", ":", "if", "brightness", "is", "not", "None", ":", "self", ".", "brightness", "=", "brightness", "return", "if", "brightness", "!=",...	32.642857	12.357143
def initinfo(self) -> Tuple[Union[float, int, bool], bool]: """The actual initial value of the given parameter. Some \|Parameter\| subclasses define another value for class attribute `INIT` than \|None\| to provide a default value. Let's define a parameter test class and prepare a function...	[ "def", "initinfo", "(", "self", ")", "->", "Tuple", "[", "Union", "[", "float", ",", "int", ",", "bool", "]", ",", "bool", "]", ":", "init", "=", "self", ".", "INIT", "if", "(", "init", "is", "not", "None", ")", "and", "hydpy", ".", "pub", ".",...	32.0625	20.40625
def dump_to_stream(self, cnf, stream, **kwargs): """ Dump config 'cnf' to a file or file-like object 'stream'. :param cnf: Shell variables data to dump :param stream: Shell script file or file like object :param kwargs: backend-specific optional keyword parameters :: dict ...	[ "def", "dump_to_stream", "(", "self", ",", "cnf", ",", "stream", ",", "", "", "kwargs", ")", ":", "for", "key", ",", "val", "in", "anyconfig", ".", "compat", ".", "iteritems", "(", "cnf", ")", ":", "stream", ".", "write", "(", "\"%s='%s'%s\"", "%",...	43.6	17.4
def getInfo(self): """ Returns a DevInfo instance, a named tuple with the following items: - bustype: one of BUS_USB, BUS_HIL, BUS_BLUETOOTH or BUS_VIRTUAL - vendor: device's vendor number - product: device's product number """ devinfo = _hidraw_devinfo() ...	[ "def", "getInfo", "(", "self", ")", ":", "devinfo", "=", "_hidraw_devinfo", "(", ")", "self", ".", "_ioctl", "(", "_HIDIOCGRAWINFO", ",", "devinfo", ",", "True", ")", "return", "DevInfo", "(", "devinfo", ".", "bustype", ",", "devinfo", ".", "vendor", ","...	42.7	13.9
def update(self, roomId, title=None, request_parameters): """Update details for a room, by ID. Args: roomId(basestring): The room ID. title(basestring): A user-friendly name for the room. request_parameters: Additional request parameters (provides ...	[ "def", "update", "(", "self", ",", "roomId", ",", "title", "=", "None", ",", "", "", "request_parameters", ")", ":", "check_type", "(", "roomId", ",", "basestring", ",", "may_be_none", "=", "False", ")", "check_type", "(", "roomId", ",", "basestring", ...	34.83871	23.580645
def hpx_to_axes(h, npix): """ Generate a sequence of bin edge vectors corresponding to the axes of a HPX object.""" x = h.ebins z = np.arange(npix[-1] + 1) return x, z	[ "def", "hpx_to_axes", "(", "h", ",", "npix", ")", ":", "x", "=", "h", ".", "ebins", "z", "=", "np", ".", "arange", "(", "npix", "[", "-", "1", "]", "+", "1", ")", "return", "x", ",", "z" ]	26	16.285714
def solve_one(self, expr, constrain=False): """ Concretize a symbolic :class:`~manticore.core.smtlib.expression.Expression` into one solution. :param manticore.core.smtlib.Expression expr: Symbolic value to concretize :param bool constrain: If True, constrain expr to concretized...	[ "def", "solve_one", "(", "self", ",", "expr", ",", "constrain", "=", "False", ")", ":", "expr", "=", "self", ".", "migrate_expression", "(", "expr", ")", "value", "=", "self", ".", "_solver", ".", "get_value", "(", "self", ".", "_constraints", ",", "ex...	37.5	16.611111
def show_network(self): """! @brief Shows structure of the network: neurons and connections between them. """ dimension = len(self.__location[0]) if (dimension != 3) and (dimension != 2): raise NameError('Network that is located in different ...	[ "def", "show_network", "(", "self", ")", ":", "dimension", "=", "len", "(", "self", ".", "__location", "[", "0", "]", ")", "if", "(", "dimension", "!=", "3", ")", "and", "(", "dimension", "!=", "2", ")", ":", "raise", "NameError", "(", "'Network that...	53.392857	35.357143
def auto_data_specs(self): """ Data specs in the sub-study class that are not explicitly provided in the name map """ for spec in self.study_class.data_specs(): if spec.name not in self._name_map: yield spec	[ "def", "auto_data_specs", "(", "self", ")", ":", "for", "spec", "in", "self", ".", "study_class", ".", "data_specs", "(", ")", ":", "if", "spec", ".", "name", "not", "in", "self", ".", "_name_map", ":", "yield", "spec" ]	33.5	12
def clearFilter(self): """ Clear all filters. """ if self._dataFrameOriginal is not None: self.layoutAboutToBeChanged.emit() self._dataFrame = self._dataFrameOriginal self._dataFrameOriginal = None self.layoutChanged.emit()	[ "def", "clearFilter", "(", "self", ")", ":", "if", "self", ".", "_dataFrameOriginal", "is", "not", "None", ":", "self", ".", "layoutAboutToBeChanged", ".", "emit", "(", ")", "self", ".", "_dataFrame", "=", "self", ".", "_dataFrameOriginal", "self", ".", "_...	32.777778	7
def _draw_number(screen, x_offset, y_offset, number, style='class:clock', transparent=False): " Write number at position. " fg = Char(' ', 'class:clock') bg = Char(' ', '') for y, row in enumerate(_numbers[number]): screen_row = screen.data_buffer[y + y_offset] for x, n...	[ "def", "_draw_number", "(", "screen", ",", "x_offset", ",", "y_offset", ",", "number", ",", "style", "=", "'class:clock'", ",", "transparent", "=", "False", ")", ":", "fg", "=", "Char", "(", "' '", ",", "'class:clock'", ")", "bg", "=", "Char", "(", "' ...	36.769231	12.769231
def _set_int(self, commands, name): """ set integer value from commands """ if name in commands: try: value = int(commands[name]) setattr(self, name, value) except ValueError: pass	[ "def", "_set_int", "(", "self", ",", "commands", ",", "name", ")", ":", "if", "name", "in", "commands", ":", "try", ":", "value", "=", "int", "(", "commands", "[", "name", "]", ")", "setattr", "(", "self", ",", "name", ",", "value", ")", "except", ...	27.5	7.7
def deleted(self): 'Return datetime.datetime or None if the file isnt deleted' _d = self.folder.attrib.get('deleted', None) if _d is None: return None return dateutil.parser.parse(str(_d))	[ "def", "deleted", "(", "self", ")", ":", "_d", "=", "self", ".", "folder", ".", "attrib", ".", "get", "(", "'deleted'", ",", "None", ")", "if", "_d", "is", "None", ":", "return", "None", "return", "dateutil", ".", "parser", ".", "parse", "(", "str"...	43.2	14.4
def provide_label(self): """The name and shape of label provided by this iterator""" return [(k, tuple([self.batch_size] + list(v.shape[1:]))) for k, v in self.label]	[ "def", "provide_label", "(", "self", ")", ":", "return", "[", "(", "k", ",", "tuple", "(", "[", "self", ".", "batch_size", "]", "+", "list", "(", "v", ".", "shape", "[", "1", ":", "]", ")", ")", ")", "for", "k", ",", "v", "in", "self", ".", ...	60	21.666667
def endpoint_delete(service, region=None, profile=None, interface=None, **connection_args): ''' Delete endpoints of an Openstack service CLI Examples: .. code-block:: bash salt 'v2' keystone.endpoint_delete nova [region=RegionOne] salt 'v3' keystone.endpoint_delete nova interface=adm...	[ "def", "endpoint_delete", "(", "service", ",", "region", "=", "None", ",", "profile", "=", "None", ",", "interface", "=", "None", ",", "", "", "connection_args", ")", ":", "kstone", "=", "auth", "(", "profile", ",", "", "", "connection_args", ")", ...	38.45	27.05
def _link_rels(obj, fields=None, save=False, overwrite=False): """Populate any database related fields (ForeignKeyField, OneToOneField) that have `_get`ters to populate them with""" if not fields: meta = obj._meta fields = [f.name for f in meta.fields if hasattr(f, 'do_related_class') and not f....	[ "def", "_link_rels", "(", "obj", ",", "fields", "=", "None", ",", "save", "=", "False", ",", "overwrite", "=", "False", ")", ":", "if", "not", "fields", ":", "meta", "=", "obj", ".", "_meta", "fields", "=", "[", "f", ".", "name", "for", "f", "in"...	56.466667	32.2
def ex6_2(n): """ Generate a triangle pulse as described in Example 6-2 of Chapter 6. You need to supply an index array n that covers at least [-2, 5]. The function returns the hard-coded signal of the example. Parameters ---------- n : time index ndarray covering at least -2 ...	[ "def", "ex6_2", "(", "n", ")", ":", "x", "=", "np", ".", "zeros", "(", "len", "(", "n", ")", ")", "for", "k", ",", "nn", "in", "enumerate", "(", "n", ")", ":", "if", "nn", ">=", "-", "2", "and", "nn", "<=", "5", ":", "x", "[", "k", "]",...	25	19.466667
def get_function(rule, domain, normalize, **parameters): """ Create a quadrature function and set default parameter values. Args: rule (str): Name of quadrature rule defined in ``QUAD_FUNCTIONS``. domain (Dist, numpy.ndarray): Defines ``lower`` and ``upper`` that is ...	[ "def", "get_function", "(", "rule", ",", "domain", ",", "normalize", ",", "", "", "parameters", ")", ":", "from", ".", ".", ".", "distributions", ".", "baseclass", "import", "Dist", "if", "isinstance", "(", "domain", ",", "Dist", ")", ":", "lower", "...	37.616667	17.65
def veoh_download(url, output_dir = '.', merge = False, info_only = False, *kwargs): '''Get item_id''' if re.match(r'http://www.veoh.com/watch/\w+', url): item_id = match1(url, r'http://www.veoh.com/watch/(\w+)') elif re.match(r'http://www.veoh.com/m/watch.php\?v=\.', url): item_id = match...	[ "def", "veoh_download", "(", "url", ",", "output_dir", "=", "'.'", ",", "merge", "=", "False", ",", "info_only", "=", "False", ",", "", "", "kwargs", ")", ":", "if", "re", ".", "match", "(", "r'http://www.veoh.com/watch/\\w+'", ",", "url", ")", ":", ...	58.777778	29.888889
def make_association(self, record): """ contstruct the association :param record: :return: modeled association of genotype to mammalian phenotype """ model = Model(self.graph) record['relation']['id'] = self.resolve("has phenotype") # define the triple ...	[ "def", "make_association", "(", "self", ",", "record", ")", ":", "model", "=", "Model", "(", "self", ".", "graph", ")", "record", "[", "'relation'", "]", "[", "'id'", "]", "=", "self", ".", "resolve", "(", "\"has phenotype\"", ")", "# define the triple", ...	37.777778	19.2
def _openssl_key_iv(passphrase, salt): """ Returns a (key, iv) tuple that can be used in AES symmetric encryption from a passphrase (a byte or unicode string) and salt (a byte array). """ def _openssl_kdf(req): if hasattr(passphrase, 'encode'): passwd = passphrase.encode('asc...	[ "def", "_openssl_key_iv", "(", "passphrase", ",", "salt", ")", ":", "def", "_openssl_kdf", "(", "req", ")", ":", "if", "hasattr", "(", "passphrase", ",", "'encode'", ")", ":", "passwd", "=", "passphrase", ".", "encode", "(", "'ascii'", ",", "'ignore'", "...	37.772727	13.954545
def _set_suffix_links(self): ''' Sets all suffix links in all nodes in this trie. ''' self._suffix_links_set = True for current, parent in self.bfs(): # skip the root node if parent is None: continue current.longest_prefix = par...	[ "def", "_set_suffix_links", "(", "self", ")", ":", "self", ".", "_suffix_links_set", "=", "True", "for", "current", ",", "parent", "in", "self", ".", "bfs", "(", ")", ":", "# skip the root node", "if", "parent", "is", "None", ":", "continue", "current", "....	37.676471	11.264706
def get_client_parameters(username: str, ip_address: str, user_agent: str) -> dict: """ Get query parameters for filtering AccessAttempt queryset. This method returns a dict that guarantees iteration order for keys and values, and can so be used in e.g. the generation of hash keys or other deterministi...	[ "def", "get_client_parameters", "(", "username", ":", "str", ",", "ip_address", ":", "str", ",", "user_agent", ":", "str", ")", "->", "dict", ":", "filter_kwargs", "=", "dict", "(", ")", "if", "settings", ".", "AXES_ONLY_USER_FAILURES", ":", "# 1. Only individ...	41.259259	25.037037
def convert_vectored_io_slice_to_final_path_name(local_path, ase): # type: (pathlib.Path, # blobxfer.models.azure.StorageEntity) -> pathlib.Path """Convert vectored io slice to final path name :param pathlib.Path local_path: local path :param blobxfer.models.azure.StorageE...	[ "def", "convert_vectored_io_slice_to_final_path_name", "(", "local_path", ",", "ase", ")", ":", "# type: (pathlib.Path,", "# blobxfer.models.azure.StorageEntity) -> pathlib.Path", "name", "=", "blobxfer", ".", "models", ".", "metadata", ".", "remove_vectored_io_slice_suffi...	44.666667	11.733333
def return_max_phrase(run, idx, dictionary): """ Finds the maximal phrase in the run starting from the given index. It uses the dictionary to find sequences of ids that can be merged into a phrase. :param run: a run of ids :param idx: the position in the run to start looking fo...	[ "def", "return_max_phrase", "(", "run", ",", "idx", ",", "dictionary", ")", ":", "if", "idx", "<", "len", "(", "run", ")", "and", "run", "[", "idx", "]", "in", "dictionary", ":", "id", "=", "run", "[", "idx", "]", "rv", ",", "rv_idx", "=", "Phras...	53.857143	28.809524
def compensate_system_time_change(self, difference): # pragma: no cover, # not with unit tests """If a system time change occurs we have to update properties time related to reflect change :param difference: difference between new time and old time :type difference: :re...	[ "def", "compensate_system_time_change", "(", "self", ",", "difference", ")", ":", "# pragma: no cover,", "# not with unit tests", "# We only need to change some value", "for", "prop", "in", "(", "'last_notification'", ",", "'last_state_change'", ",", "'last_hard_state_change'",...	43.933333	16.866667
def reset_index(self, level=None, drop=False, name=None, inplace=False): """ Generate a new DataFrame or Series with the index reset. This is useful when the index needs to be treated as a column, or when the index is meaningless and needs to be reset to the default before anoth...	[ "def", "reset_index", "(", "self", ",", "level", "=", "None", ",", "drop", "=", "False", ",", "name", "=", "None", ",", "inplace", "=", "False", ")", ":", "inplace", "=", "validate_bool_kwarg", "(", "inplace", ",", "'inplace'", ")", "if", "drop", ":", ...	33.152672	22.78626
def parse_tuple(self, simplified=False, with_condexpr=True, extra_end_rules=None, explicit_parentheses=False): """Works like `parse_expression` but if multiple expressions are delimited by a comma a :class:`~jinja2.nodes.Tuple` node is created. This method could also return a...	[ "def", "parse_tuple", "(", "self", ",", "simplified", "=", "False", ",", "with_condexpr", "=", "True", ",", "extra_end_rules", "=", "None", ",", "explicit_parentheses", "=", "False", ")", ":", "lineno", "=", "self", ".", "stream", ".", "current", ".", "lin...	41.888889	21.537037
def limit_x( self, limit_lower = None, # float limit_upper = None # float ): """ get or set x limits of the current axes x_min, x_max = limit_x() # return the current limit_x limit_x(x_min, x_max) # set the limit_x to x_min, x_max """ ...	[ "def", "limit_x", "(", "self", ",", "limit_lower", "=", "None", ",", "# float", "limit_upper", "=", "None", "# float", ")", ":", "if", "limit_lower", "is", "None", "and", "limit_upper", "is", "None", ":", "return", "self", ".", "_limit_x", "elif", "hasattr...	30.478261	15.695652
def get_cell_shift(flow_model): """Get flow direction induced cell shift dict. Args: flow_model: Currently, "TauDEM", "ArcGIS", and "Whitebox" are supported. """ assert flow_model.lower() in FlowModelConst.d8_deltas return FlowModelConst.d8_deltas.get(flow_model.lower...	[ "def", "get_cell_shift", "(", "flow_model", ")", ":", "assert", "flow_model", ".", "lower", "(", ")", "in", "FlowModelConst", ".", "d8_deltas", "return", "FlowModelConst", ".", "d8_deltas", ".", "get", "(", "flow_model", ".", "lower", "(", ")", ")" ]	45.285714	17.714286
def computeMatchProbabilityOmega(k, bMax, theta, nTrials=100): """ The Omega match probability estimates the probability of matching when both vectors have exactly b components in common. This function computes this probability for b=1 to bMax. For each value of b this function: 1) Creates nTrials instan...	[ "def", "computeMatchProbabilityOmega", "(", "k", ",", "bMax", ",", "theta", ",", "nTrials", "=", "100", ")", ":", "omegaProb", "=", "np", ".", "zeros", "(", "bMax", "+", "1", ")", "for", "b", "in", "range", "(", "1", ",", "bMax", "+", "1", ")", "...	32.714286	24.657143
def validate_enum_attribute(self, attribute: str, candidates: Set[Union[str, int, float]]) -> None: """ Validates that the attribute value is among the candidates """ self.add_errors( validate_enum_attribute(self.fully_qualified_name, self._spec, attribute, ca...	[ "def", "validate_enum_attribute", "(", "self", ",", "attribute", ":", "str", ",", "candidates", ":", "Set", "[", "Union", "[", "str", ",", "int", ",", "float", "]", "]", ")", "->", "None", ":", "self", ".", "add_errors", "(", "validate_enum_attribute", "...	65.2	24.8
def _prepare_b_jkl_mn(readout_povm, pauli_basis, pre_channel_ops, post_channel_ops, rho0): """ Prepare the coefficient matrix for process tomography. This function uses sparse matrices for much greater efficiency. The coefficient matrix is defined as: .. math:: B_{(jkl)(mn)}=\sum_{r,q}\pi_...	[ "def", "_prepare_b_jkl_mn", "(", "readout_povm", ",", "pauli_basis", ",", "pre_channel_ops", ",", "post_channel_ops", ",", "rho0", ")", ":", "c_jk_m", "=", "state_tomography", ".", "_prepare_c_jk_m", "(", "readout_povm", ",", "pauli_basis", ",", "post_channel_ops", ...	57.560976	34.97561
def from_rotation_matrix(rot, nonorthogonal=True): """Convert input 3x3 rotation matrix to unit quaternion By default, if scipy.linalg is available, this function uses Bar-Itzhack's algorithm to allow for non-orthogonal matrices. [J. Guidance, Vol. 23, No. 6, p. 1085 <http://dx.doi.org/10.2514/2.4654>]...	[ "def", "from_rotation_matrix", "(", "rot", ",", "nonorthogonal", "=", "True", ")", ":", "try", ":", "from", "scipy", "import", "linalg", "except", "ImportError", ":", "linalg", "=", "False", "rot", "=", "np", ".", "array", "(", "rot", ",", "copy", "=", ...	42.934307	20.014599
def get_hwclock(): ''' Get current hardware clock setting (UTC or localtime) CLI Example: .. code-block:: bash salt '*' timezone.get_hwclock ''' if salt.utils.path.which('timedatectl'): ret = _timedatectl() for line in (x.strip() for x in ret['stdout'].splitlines()): ...	[ "def", "get_hwclock", "(", ")", ":", "if", "salt", ".", "utils", ".", "path", ".", "which", "(", "'timedatectl'", ")", ":", "ret", "=", "_timedatectl", "(", ")", "for", "line", "in", "(", "x", ".", "strip", "(", ")", "for", "x", "in", "ret", "[",...	40.288288	15.945946
def tool_classpath_from_products(products, key, scope): """Get a classpath for the tool previously registered under key in the given scope. :param products: The products of the current pants run. :type products: :class:`pants.goal.products.Products` :param string key: The key the tool configuration was...	[ "def", "tool_classpath_from_products", "(", "products", ",", "key", ",", "scope", ")", ":", "callback_product_map", "=", "products", ".", "get_data", "(", "'jvm_build_tools_classpath_callbacks'", ")", "or", "{", "}", "callback", "=", "callback_product_map", ".", "ge...	48.9375	22.1875
def footprints_from_address(address, distance, footprint_type='building', retain_invalid=False): """ Get footprints within some distance north, south, east, and west of an address. Parameters ---------- address : string the address to geocode to a lat-long point distance : numeric ...	[ "def", "footprints_from_address", "(", "address", ",", "distance", ",", "footprint_type", "=", "'building'", ",", "retain_invalid", "=", "False", ")", ":", "# geocode the address string to a (lat, lon) point", "point", "=", "geocode", "(", "query", "=", "address", ")"...	32.407407	24.851852
def timeout_at(clock, coro=None, *args): '''Execute the specified coroutine and return its result. However, issue a cancellation request to the calling task after seconds have elapsed. When this happens, a TaskTimeout exception is raised. If coro is None, the result of this function serves as an a...	[ "def", "timeout_at", "(", "clock", ",", "coro", "=", "None", ",", "*", "args", ")", ":", "if", "coro", ":", "return", "_timeout_after_func", "(", "clock", ",", "True", ",", "coro", ",", "args", ")", "return", "TimeoutAfter", "(", "clock", ",", "absolut...	42.45	24.95
def build(templates=None, schemes=None, base_output_dir=None): """Main build function to initiate building process.""" template_dirs = templates or get_template_dirs() scheme_files = get_scheme_files(schemes) base_output_dir = base_output_dir or rel_to_cwd('output') # raise LookupError if there is ...	[ "def", "build", "(", "templates", "=", "None", ",", "schemes", "=", "None", ",", "base_output_dir", "=", "None", ")", ":", "template_dirs", "=", "templates", "or", "get_template_dirs", "(", ")", "scheme_files", "=", "get_scheme_files", "(", "schemes", ")", "...	34.916667	21.291667
def run_plasmid_extractor(self): """ Create and run the plasmid extractor system call """ logging.info('Extracting plasmids') # Define the system call extract_command = 'PlasmidExtractor.py -i {inf} -o {outf} -p {plasdb} -d {db} -t {cpus} -nc' \ .format(inf=se...	[ "def", "run_plasmid_extractor", "(", "self", ")", ":", "logging", ".", "info", "(", "'Extracting plasmids'", ")", "# Define the system call", "extract_command", "=", "'PlasmidExtractor.py -i {inf} -o {outf} -p {plasdb} -d {db} -t {cpus} -nc'", ".", "format", "(", "inf", "=", ...	47.47619	14.047619
def start(self): """ Start process. :returns: itself :rtype: OutputExecutor .. note:: Process will be considered started, when defined banner will appear in process output. """ super(OutputExecutor, self).start() # get a polling...	[ "def", "start", "(", "self", ")", ":", "super", "(", "OutputExecutor", ",", "self", ")", ".", "start", "(", ")", "# get a polling object", "self", ".", "poll_obj", "=", "select", ".", "poll", "(", ")", "# register a file descriptor", "# POLLIN because we will wa...	25.827586	21.068966
def get(datasets_identifiers, identifier_type='hid', history_id=None): """ Given the history_id that is displayed to the user, this function will download the file[s] from the history and stores them under /import/ Return value[s] are the path[s] to the dataset[s] stored under /import/ "...	[ "def", "get", "(", "datasets_identifiers", ",", "identifier_type", "=", "'hid'", ",", "history_id", "=", "None", ")", ":", "history_id", "=", "history_id", "or", "os", ".", "environ", "[", "'HISTORY_ID'", "]", "# The object version of bioblend is to slow in retrieving...	54.107143	23.75
def add_or_replace_filter(self, new_filter): """Replaces null or blank filter or adds filter to existing list.""" if self.filter.lower() in self._FILTERS_TO_REPLACE: self.filter = new_filter elif new_filter not in self.filter.split(";"): self.filter = ";".join([self.filte...	[ "def", "add_or_replace_filter", "(", "self", ",", "new_filter", ")", ":", "if", "self", ".", "filter", ".", "lower", "(", ")", "in", "self", ".", "_FILTERS_TO_REPLACE", ":", "self", ".", "filter", "=", "new_filter", "elif", "new_filter", "not", "in", "self...	52.142857	8.142857
def traverse(fn, expr, type=ir.Expr, container=Stack): """Utility for generic expression tree traversal Parameters ---------- fn : Callable[[ir.Expr], Tuple[Union[Boolean, Iterable], Any]] This function will be applied on each expressions, it must return a tuple. The first element of th...	[ "def", "traverse", "(", "fn", ",", "expr", ",", "type", "=", "ir", ".", "Expr", ",", "container", "=", "Stack", ")", ":", "args", "=", "expr", "if", "isinstance", "(", "expr", ",", "collections", ".", "abc", ".", "Iterable", ")", "else", "[", "expr...	32.826087	20.413043
def js_reverse_inline(context): """ Outputs a string of javascript that can generate URLs via the use of the names given to those URLs. """ if 'request' in context: default_urlresolver = get_resolver(getattr(context['request'], 'urlconf', None)) else: default_urlresolver = get_re...	[ "def", "js_reverse_inline", "(", "context", ")", ":", "if", "'request'", "in", "context", ":", "default_urlresolver", "=", "get_resolver", "(", "getattr", "(", "context", "[", "'request'", "]", ",", "'urlconf'", ",", "None", ")", ")", "else", ":", "default_u...	37.8	15.4
def hincrby(self, hashkey, attribute, increment=1): """Emulate hincrby.""" return self._hincrby(hashkey, attribute, 'HINCRBY', long, increment)	[ "def", "hincrby", "(", "self", ",", "hashkey", ",", "attribute", ",", "increment", "=", "1", ")", ":", "return", "self", ".", "_hincrby", "(", "hashkey", ",", "attribute", ",", "'HINCRBY'", ",", "long", ",", "increment", ")" ]	39.25	21.75
def _parse_config(self): """Parses the mlag global configuration Returns: dict: A dict object that is intended to be merged into the resource dict """ config = self.get_block('mlag configuration') cfg = dict() cfg.update(self._parse_domain_id(...	[ "def", "_parse_config", "(", "self", ")", ":", "config", "=", "self", ".", "get_block", "(", "'mlag configuration'", ")", "cfg", "=", "dict", "(", ")", "cfg", ".", "update", "(", "self", ".", "_parse_domain_id", "(", "config", ")", ")", "cfg", ".", "up...	36.933333	14.4
def mode(self): """ Reading returns the currently selected mode. Writing sets the mode. Generally speaking when the mode changes any sensor or motor devices associated with the port will be removed new ones loaded, however this this will depend on the individual driver implementi...	[ "def", "mode", "(", "self", ")", ":", "self", ".", "_mode", ",", "value", "=", "self", ".", "get_attr_string", "(", "self", ".", "_mode", ",", "'mode'", ")", "return", "value" ]	47.555556	24
def quote_value(value): """ convert values to mysql code for the same mostly delegate directly to the mysql lib, but some exceptions exist """ try: if value == None: return SQL_NULL elif isinstance(value, SQL): return quote_sql(value.template, value.param) ...	[ "def", "quote_value", "(", "value", ")", ":", "try", ":", "if", "value", "==", "None", ":", "return", "SQL_NULL", "elif", "isinstance", "(", "value", ",", "SQL", ")", ":", "return", "quote_sql", "(", "value", ".", "template", ",", "value", ".", "param"...	42.153846	16.923077
def _compute_term3(self, C, rrup): """ This computes the term f3 in equation 34, page 1021 but corrected according to the erratum. """ f3 = np.zeros_like(rrup) idx_between_70_130 = (rrup > 70) & (rrup <= 130) idx_greater_130 = rrup > 130 f3[idx_between_7...	[ "def", "_compute_term3", "(", "self", ",", "C", ",", "rrup", ")", ":", "f3", "=", "np", ".", "zeros_like", "(", "rrup", ")", "idx_between_70_130", "=", "(", "rrup", ">", "70", ")", "&", "(", "rrup", "<=", "130", ")", "idx_greater_130", "=", "rrup", ...	29.55	20.95
def ls_packages(self): """ List packages in this store. """ packages = [] pkgdir = os.path.join(self._path, self.PKG_DIR) if not os.path.isdir(pkgdir): return [] for team in sub_dirs(pkgdir): for user in sub_dirs(self.team_path(team)): ...	[ "def", "ls_packages", "(", "self", ")", ":", "packages", "=", "[", "]", "pkgdir", "=", "os", ".", "path", ".", "join", "(", "self", ".", "_path", ",", "self", ".", "PKG_DIR", ")", "if", "not", "os", ".", "path", ".", "isdir", "(", "pkgdir", ")", ...	53.857143	24.714286
def new(cls, freeform_builder, x, y): """Return a new _LineSegment object ending at point (x, y). Both x and y are rounded to the nearest integer before use. """ return cls(freeform_builder, int(round(x)), int(round(y)))	[ "def", "new", "(", "cls", ",", "freeform_builder", ",", "x", ",", "y", ")", ":", "return", "cls", "(", "freeform_builder", ",", "int", "(", "round", "(", "x", ")", ")", ",", "int", "(", "round", "(", "y", ")", ")", ")" ]	42.333333	16.666667
def _credssp_processor(self, context): """ Implements a state machine :return: """ http_response = (yield) credssp_context = self._get_credssp_header(http_response) if credssp_context is None: raise Exception('The remote host did not respond with a \'...	[ "def", "_credssp_processor", "(", "self", ",", "context", ")", ":", "http_response", "=", "(", "yield", ")", "credssp_context", "=", "self", ".", "_get_credssp_header", "(", "http_response", ")", "if", "credssp_context", "is", "None", ":", "raise", "Exception", ...	48.699115	26.557522
def sortDictList(dictList,**kwargs): ''' students = [ {'name':'john','class':'A', 'year':15}, {'name':'jane','class':'B', 'year':12}, {'name':'dave','class':'B', 'year':10} ] rslt = sortDictList(students,cond_keys=['name','class','year']) ...	[ "def", "sortDictList", "(", "dictList", ",", "", "", "kwargs", ")", ":", "def", "default_eq_func", "(", "value1", ",", "value2", ")", ":", "cond", "=", "(", "value1", "==", "value2", ")", "return", "(", "cond", ")", "def", "default_gt_func", "(", "va...	30.257576	17.621212
def find(self, signature = None, order = 0, since = None, until = None, offset = None, limit = None): """ Retrieve all crash dumps in the database, optionally filtering them by signature and timestamp, and/or sorting them by timestamp. Resul...	[ "def", "find", "(", "self", ",", "signature", "=", "None", ",", "order", "=", "0", ",", "since", "=", "None", ",", "until", "=", "None", ",", "offset", "=", "None", ",", "limit", "=", "None", ")", ":", "# Validate the parameters.", "if", "since", "an...	37.164557	20.734177
def execute(filename, formatted_name): """Renames a file based on the name generated using metadata. :param str filename: absolute path and filename of original file :param str formatted_name: absolute path and new filename """ if os.path.isfile(formatted_name): # If the destination exists...	[ "def", "execute", "(", "filename", ",", "formatted_name", ")", ":", "if", "os", ".", "path", ".", "isfile", "(", "formatted_name", ")", ":", "# If the destination exists, skip rename unless overwrite enabled", "if", "not", "cfg", ".", "CONF", ".", "overwrite_file_en...	39.235294	18.411765
def transform_data(function, input_data): ''' a function to apply a function to each value in a nested dictionary :param function: callable function with a single input of any datatype :param input_data: dictionary or list with nested data to transform :return: dictionary or list with data transformed...	[ "def", "transform_data", "(", "function", ",", "input_data", ")", ":", "# construct copy", "try", ":", "from", "copy", "import", "deepcopy", "output_data", "=", "deepcopy", "(", "input_data", ")", "except", ":", "raise", "ValueError", "(", "'transform_data() input...	34.382353	21.205882
def remove_actor(self, actor, reset_camera=False): """ Removes an actor from the Plotter. Parameters ---------- actor : vtk.vtkActor Actor that has previously added to the Renderer. reset_camera : bool, optional Resets camera so all actors can be...	[ "def", "remove_actor", "(", "self", ",", "actor", ",", "reset_camera", "=", "False", ")", ":", "for", "renderer", "in", "self", ".", "renderers", ":", "renderer", ".", "remove_actor", "(", "actor", ",", "reset_camera", ")", "return", "True" ]	27.52381	17.809524
def momentum(data, period): """ Momentum. Formula: DATA[i] - DATA[i - period] """ catch_errors.check_for_period_error(data, period) momentum = [data[idx] - data[idx+1-period] for idx in range(period-1, len(data))] momentum = fill_for_noncomputable_vals(data, momentum) return moment...	[ "def", "momentum", "(", "data", ",", "period", ")", ":", "catch_errors", ".", "check_for_period_error", "(", "data", ",", "period", ")", "momentum", "=", "[", "data", "[", "idx", "]", "-", "data", "[", "idx", "+", "1", "-", "period", "]", "for", "idx...	25.916667	21.25
def binary(self, new_binary): """Sets location of the browser binary, either by string or ``FirefoxBinary`` instance. """ if not isinstance(new_binary, FirefoxBinary): new_binary = FirefoxBinary(new_binary) self._binary = new_binary	[ "def", "binary", "(", "self", ",", "new_binary", ")", ":", "if", "not", "isinstance", "(", "new_binary", ",", "FirefoxBinary", ")", ":", "new_binary", "=", "FirefoxBinary", "(", "new_binary", ")", "self", ".", "_binary", "=", "new_binary" ]	34.75	10.75
def _main(self, client, copy_source, bucket, key, upload_id, part_number, extra_args, callbacks, size): """ :param client: The client to use when calling PutObject :param copy_source: The CopySource parameter to use :param bucket: The name of the bucket to upload to ...	[ "def", "_main", "(", "self", ",", "client", ",", "copy_source", ",", "bucket", ",", "key", ",", "upload_id", ",", "part_number", ",", "extra_args", ",", "callbacks", ",", "size", ")", ":", "response", "=", "client", ".", "upload_part_copy", "(", "CopySourc...	44.16129	18.870968
def validate_public_key(value): """ Check that the given value is a valid RSA Public key in either PEM or OpenSSH format. If it is invalid, raises ``django.core.exceptions.ValidationError``. """ is_valid = False exc = None for load in (load_pem_public_key, load_ssh_public_key): if n...	[ "def", "validate_public_key", "(", "value", ")", ":", "is_valid", "=", "False", "exc", "=", "None", "for", "load", "in", "(", "load_pem_public_key", ",", "load_ssh_public_key", ")", ":", "if", "not", "is_valid", ":", "try", ":", "load", "(", "value", ".", ...	31.833333	20.722222
def accepted(self): """Successfully close the widget and return the loaded model. This method is also a `SLOT`. The dialog will be closed, when the `ok` button is pressed. If a `DataFrame` was loaded, it will be emitted by the signal `load`. """ model = self._previewTab...	[ "def", "accepted", "(", "self", ")", ":", "model", "=", "self", ".", "_previewTableView", ".", "model", "(", ")", "if", "model", "is", "not", "None", ":", "df", "=", "model", ".", "dataFrame", "(", ")", ".", "copy", "(", ")", "dfModel", "=", "DataF...	37.625	15.875
def send_animation( self, chat_id: Union[int, str], animation: str, caption: str = "", parse_mode: str = "", duration: int = 0, width: int = 0, height: int = 0, thumb: str = None, disable_notification: bool = None, reply_to_message_...	[ "def", "send_animation", "(", "self", ",", "chat_id", ":", "Union", "[", "int", ",", "str", "]", ",", "animation", ":", "str", ",", "caption", ":", "str", "=", "\"\"", ",", "parse_mode", ":", "str", "=", "\"\"", ",", "duration", ":", "int", "=", "0...	44.913793	24.074713
def overlaps(self, other): """Tell if self is partly contained in other.""" return self.network_address in other or ( self.broadcast_address in other or ( other.network_address in self or ( other.broadcast_address in self)))	[ "def", "overlaps", "(", "self", ",", "other", ")", ":", "return", "self", ".", "network_address", "in", "other", "or", "(", "self", ".", "broadcast_address", "in", "other", "or", "(", "other", ".", "network_address", "in", "self", "or", "(", "other", "."...	47.166667	9.166667
def updateflags(self, flags): """ Thin wrapper around build_update(flags=X). This only handles simple status changes, anything like needinfo requestee needs to call build_update + update_bugs directly :param flags: Dictionary of the form {"flagname": "status"}, example ...	[ "def", "updateflags", "(", "self", ",", "flags", ")", ":", "flaglist", "=", "[", "]", "for", "key", ",", "value", "in", "flags", ".", "items", "(", ")", ":", "flaglist", ".", "append", "(", "{", "\"name\"", ":", "key", ",", "\"status\"", ":", "valu...	42.285714	16.428571
def apply_changes(self, event): """ applies the changes in the various attribute boxes of this object to all highlighted fit objects in the logger, these changes are reflected both in this object and in the Zeq_GUI parent object. @param: event -> the wx.ButtonEvent that triggered this function ...	[ "def", "apply_changes", "(", "self", ",", "event", ")", ":", "new_name", "=", "self", ".", "name_box", ".", "GetLineText", "(", "0", ")", "new_color", "=", "self", ".", "color_box", ".", "GetValue", "(", ")", "new_tmin", "=", "self", ".", "tmin_box", "...	47.938776	26.591837
def vignetting(xy, f=100, alpha=0, rot=0, tilt=0, cx=50, cy=50): ''' Vignetting equation using the KANG-WEISS-MODEL see http://research.microsoft.com/en-us/um/people/sbkang/publications/eccv00.pdf f - focal length alpha - coefficient in the geometric vignetting factor tilt - tilt angl...	[ "def", "vignetting", "(", "xy", ",", "f", "=", "100", ",", "alpha", "=", "0", ",", "rot", "=", "0", ",", "tilt", "=", "0", ",", "cx", "=", "50", ",", "cy", "=", "50", ")", ":", "x", ",", "y", "=", "xy", "# distance to image center:\r", "dist", ...	28.689655	19.931034
def pkginfo_to_metadata(egg_info_path, pkginfo_path): """ Convert .egg-info directory with PKG-INFO to the Metadata 1.3 aka old-draft Metadata 2.0 format. """ pkg_info = read_pkg_info(pkginfo_path) pkg_info.replace_header('Metadata-Version', '2.0') requires_path = os.path.join(egg_info_path,...	[ "def", "pkginfo_to_metadata", "(", "egg_info_path", ",", "pkginfo_path", ")", ":", "pkg_info", "=", "read_pkg_info", "(", "pkginfo_path", ")", "pkg_info", ".", "replace_header", "(", "'Metadata-Version'", ",", "'2.0'", ")", "requires_path", "=", "os", ".", "path",...	39.5	14.7
def _get_policy_set(self, policy_set_id): """ Get a specific policy set by id. """ uri = self._get_policy_set_uri(guid=policy_set_id) return self.service._get(uri)	[ "def", "_get_policy_set", "(", "self", ",", "policy_set_id", ")", ":", "uri", "=", "self", ".", "_get_policy_set_uri", "(", "guid", "=", "policy_set_id", ")", "return", "self", ".", "service", ".", "_get", "(", "uri", ")" ]	33	3.666667
def pix2sky_vec(self, pixel, r, theta): """ Given and input position and vector in pixel coordinates, calculate the equivalent position and vector in sky coordinates. Parameters ---------- pixel : (int,int) origin of vector in pixel coordinates r : fl...	[ "def", "pix2sky_vec", "(", "self", ",", "pixel", ",", "r", ",", "theta", ")", ":", "ra1", ",", "dec1", "=", "self", ".", "pix2sky", "(", "pixel", ")", "x", ",", "y", "=", "pixel", "a", "=", "[", "x", "+", "r", "*", "np", ".", "cos", "(", "n...	31.6	14.866667
def _send_event_to_all(self, action, event): """ Send an event to all the client listening for notifications on all projects :param action: Action name :param event: Event to send """ for project_listeners in self._listeners.values(): for listener in ...	[ "def", "_send_event_to_all", "(", "self", ",", "action", ",", "event", ")", ":", "for", "project_listeners", "in", "self", ".", "_listeners", ".", "values", "(", ")", ":", "for", "listener", "in", "project_listeners", ":", "listener", ".", "put_nowait", "(",...	35	13.909091
def convert_numpy_str_to_uint16(data): """ Converts a numpy.unicode\_ to UTF-16 in numpy.uint16 form. Convert a ``numpy.unicode_`` or an array of them (they are UTF-32 strings) to UTF-16 in the equivalent array of ``numpy.uint16``. The conversion will throw an exception if any characters cannot be ...	[ "def", "convert_numpy_str_to_uint16", "(", "data", ")", ":", "# An empty string should be an empty uint16", "if", "data", ".", "nbytes", "==", "0", ":", "return", "np", ".", "uint16", "(", "[", "]", ")", "# We need to use the UTF-16 codec for our endianness. Using the", ...	34.924528	21.886792
def basic_auth_header(username, password): '''generate a base64 encoded header to ask for a token. This means base64 encoding a username and password and adding to the Authorization header to identify the client. Parameters ========== username: the username password:...	[ "def", "basic_auth_header", "(", "username", ",", "password", ")", ":", "s", "=", "\"%s:%s\"", "%", "(", "username", ",", "password", ")", "if", "sys", ".", "version_info", "[", "0", "]", ">=", "3", ":", "s", "=", "bytes", "(", "s", ",", "'utf-8'", ...	32.105263	20.210526
def union(self, *others): r"""Return a new multiset with all elements from the multiset and the others with maximal multiplicities. >>> ms = Multiset('aab') >>> sorted(ms.union('bc')) ['a', 'a', 'b', 'c'] You can also use the ``\|`` operator for the same effect. However, the ope...	[ "def", "union", "(", "self", ",", "*", "others", ")", ":", "result", "=", "self", ".", "__copy__", "(", ")", "_elements", "=", "result", ".", "_elements", "_total", "=", "result", ".", "_total", "for", "other", "in", "map", "(", "self", ".", "_as_map...	40.342857	22.742857
def extend(self, args, *kwargs): """Extend current MultiDict with more values. This method must be used instead of update. """ self._extend(args, kwargs, 'extend', self._extend_items)	[ "def", "extend", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "self", ".", "_extend", "(", "args", ",", "kwargs", ",", "'extend'", ",", "self", ".", "_extend_items", ")" ]	35.5	13.5
def handleHeader(self, key, value): """Handle header values.""" if key == 'CIMError': self.CIMError = urllib.parse.unquote(value) if key == 'PGErrorDetail': self.PGErrorDetail = urllib.parse.unquote(value)	[ "def", "handleHeader", "(", "self", ",", "key", ",", "value", ")", ":", "if", "key", "==", "'CIMError'", ":", "self", ".", "CIMError", "=", "urllib", ".", "parse", ".", "unquote", "(", "value", ")", "if", "key", "==", "'PGErrorDetail'", ":", "self", ...	35.428571	13.857143
def fix_for_specific_versions(self, rdf_data, to_replace): """ Fixes of the RDF before loading the graph. All of these are workaround to circuvent known issues of the SPM and FSL exporters. """ # Load the graph as is so that we can query g = self.parse(rdf_data) ...	[ "def", "fix_for_specific_versions", "(", "self", ",", "rdf_data", ",", "to_replace", ")", ":", "# Load the graph as is so that we can query", "g", "=", "self", ".", "parse", "(", "rdf_data", ")", "# Retreive the exporter name and version", "query", "=", "\"\"\"\nprefix ni...	42.833333	22.1
def embeddedFileDel(self, name): """Delete embedded file by name.""" if self.isClosed or self.isEncrypted: raise ValueError("operation illegal for closed / encrypted doc") return _fitz.Document_embeddedFileDel(self, name)	[ "def", "embeddedFileDel", "(", "self", ",", "name", ")", ":", "if", "self", ".", "isClosed", "or", "self", ".", "isEncrypted", ":", "raise", "ValueError", "(", "\"operation illegal for closed / encrypted doc\"", ")", "return", "_fitz", ".", "Document_embeddedFileDel...	42.166667	17.666667
def parse_xml_node(self, node): '''Parse an xml.dom Node object representing a message sending object into this object. ''' self._targets = [] for c in node.getElementsByTagNameNS(RTS_NS, 'targets'): if c.getElementsByTagNameNS(RTS_NS, 'WaitTime'): ne...	[ "def", "parse_xml_node", "(", "self", ",", "node", ")", ":", "self", ".", "_targets", "=", "[", "]", "for", "c", "in", "node", ".", "getElementsByTagNameNS", "(", "RTS_NS", ",", "'targets'", ")", ":", "if", "c", ".", "getElementsByTagNameNS", "(", "RTS_N...	37.25	16.25
def get_policy(self): """ Returns an instance of :attr:`~policy_class`. :return: An instance of the current policy class. :rtype: dockermap.map.policy.base.BasePolicy """ if not self._policy: self._policy = self.policy_class(self._maps, self._clients) ...	[ "def", "get_policy", "(", "self", ")", ":", "if", "not", "self", ".", "_policy", ":", "self", ".", "_policy", "=", "self", ".", "policy_class", "(", "self", ".", "_maps", ",", "self", ".", "_clients", ")", "return", "self", ".", "_policy" ]	33.1	15.7
def from_tsv(cls, line, field_names, timezone_in_use=pytz.utc, database=None): ''' Create a model instance from a tab-separated line. The line may or may not include a newline. The `field_names` list must match the fields defined in the model, but does not have to include all of them. -...	[ "def", "from_tsv", "(", "cls", ",", "line", ",", "field_names", ",", "timezone_in_use", "=", "pytz", ".", "utc", ",", "database", "=", "None", ")", ":", "from", "six", "import", "next", "values", "=", "iter", "(", "parse_tsv", "(", "line", ")", ")", ...	42.090909	26.454545
def span(self): """Return a contiguous range that is a superset of this range. Returns: A VersionRange object representing the span of this range. For example, the span of "2+<4\|6+<8" would be "2+<8". """ other = VersionRange(None) bound = _Bound(self.bou...	[ "def", "span", "(", "self", ")", ":", "other", "=", "VersionRange", "(", "None", ")", "bound", "=", "_Bound", "(", "self", ".", "bounds", "[", "0", "]", ".", "lower", ",", "self", ".", "bounds", "[", "-", "1", "]", ".", "upper", ")", "other", "...	36.181818	18.818182
def make_app(root, **kw): ''' Utility for creating the Pecan application object. This function should generally be called from the ``setup_app`` function in your project's ``app.py`` file. :param root: A string representing a root controller object (e.g., "myapp.controller.root.Ro...	[ "def", "make_app", "(", "root", ",", "", "", "kw", ")", ":", "# Pass logging configuration (if it exists) on to the Python logging module", "logging", "=", "kw", ".", "get", "(", "'logging'", ",", "{", "}", ")", "debug", "=", "kw", ".", "get", "(", "'debug'"...	39.019608	23.568627
def marshal_dict( obj, types, method=None, fields=None, **m_kwargs ): """ Recursively marshal a Python object to a dict that can be passed to json.{dump,dumps}, a web client, or a web server, document database, etc... Args: obj: object, It's members can be neste...	[ "def", "marshal_dict", "(", "obj", ",", "types", ",", "method", "=", "None", ",", "fields", "=", "None", ",", "", "", "m_kwargs", ")", ":", "has_slots", ",", "d", "=", "_get_dict", "(", "obj", ")", "if", "fields", ":", "for", "field", "in", "fiel...	29.537313	21.80597
def dp990(self, value=None): """ Corresponds to IDD Field `dp990` Dew-point temperature corresponding to 90.0% annual cumulative frequency of occurrence (cold conditions) Args: value (float): value for IDD Field `dp990` Unit: C if `value` is ...	[ "def", "dp990", "(", "self", ",", "value", "=", "None", ")", ":", "if", "value", "is", "not", "None", ":", "try", ":", "value", "=", "float", "(", "value", ")", "except", "ValueError", ":", "raise", "ValueError", "(", "'value {} need to be of type float '"...	35.090909	20.090909
def withSize(cls, minimum, maximum): """Creates a subclass with value size constraint. """ class X(cls): subtypeSpec = cls.subtypeSpec + constraint.ValueSizeConstraint( minimum, maximum) X.__name__ = cls.__name__ return X	[ "def", "withSize", "(", "cls", ",", "minimum", ",", "maximum", ")", ":", "class", "X", "(", "cls", ")", ":", "subtypeSpec", "=", "cls", ".", "subtypeSpec", "+", "constraint", ".", "ValueSizeConstraint", "(", "minimum", ",", "maximum", ")", "X", ".", "_...	28.2	17.6
def notify(self, message): """ TODO: Add code to lpush to redis stack rpop when stack hits size 'X' """ data = dict( payload=self.payload, attempt=self.attempt, success=self.success, response_message=...	[ "def", "notify", "(", "self", ",", "message", ")", ":", "data", "=", "dict", "(", "payload", "=", "self", ".", "payload", ",", "attempt", "=", "self", ".", "attempt", ",", "success", "=", "self", ".", "success", ",", "response_message", "=", "self", ...	37.888889	10.444444
def new_driver(browser_name, args, kwargs): """Instantiates a new WebDriver instance, determining class by environment variables """ if browser_name == FIREFOX: return webdriver.Firefox(args, **kwargs) # elif options['local'] and options['browser_name'] == CHROME: ...	[ "def", "new_driver", "(", "browser_name", ",", "", "args", ",", "", "", "kwargs", ")", ":", "if", "browser_name", "==", "FIREFOX", ":", "return", "webdriver", ".", "Firefox", "(", "", "args", ",", "", "", "kwargs", ")", "# elif options['local'] and o...	44.25	22.875
def handle(self, key, value): ''' Processes a vaild action info request @param key: The key that matched the request @param value: The value associated with the key ''' # very similar to stop # break down key elements = key.split(":") spiderid = e...	[ "def", "handle", "(", "self", ",", "key", ",", "value", ")", ":", "# very similar to stop", "# break down key", "elements", "=", "key", ".", "split", "(", "\":\"", ")", "spiderid", "=", "elements", "[", "1", "]", "appid", "=", "elements", "[", "2", "]", ...	35.288889	16.4
def main(): """ NAME download_magic.py DESCRIPTION unpacks a magic formatted smartbook .txt file from the MagIC database into the tab delimited MagIC format txt files for use with the MagIC-Py programs. SYNTAX download_magic.py command line options] INPUT ta...	[ "def", "main", "(", ")", ":", "if", "'-h'", "in", "sys", ".", "argv", ":", "print", "(", "main", ".", "__doc__", ")", "sys", ".", "exit", "(", ")", "if", "'-WD'", "in", "sys", ".", "argv", ":", "ind", "=", "sys", ".", "argv", ".", "index", "(...	37	22.555556
def vel_disp(self, kwargs_mass, kwargs_light, kwargs_anisotropy, kwargs_apertur): """ computes the averaged LOS velocity dispersion in the slit (convolved) :param kwargs_mass: mass model parameters (following lenstronomy lens model conventions) :param kwargs_light: deflector light param...	[ "def", "vel_disp", "(", "self", ",", "kwargs_mass", ",", "kwargs_light", ",", "kwargs_anisotropy", ",", "kwargs_apertur", ")", ":", "sigma2_R_sum", "=", "0", "for", "i", "in", "range", "(", "0", ",", "self", ".", "_num_sampling", ")", ":", "sigma2_R", "=",...	67.2	36.1
def query_by_account(self, account_id, end_time=None, start_time=None): """ Query by account. List authentication events for a given account. """ path = {} data = {} params = {} # REQUIRED - PATH - account_id """ID""" path["ac...	[ "def", "query_by_account", "(", "self", ",", "account_id", ",", "end_time", "=", "None", ",", "start_time", "=", "None", ")", ":", "path", "=", "{", "}", "data", "=", "{", "}", "params", "=", "{", "}", "# REQUIRED - PATH - account_id\r", "\"\"\"ID\"\"\"", ...	39.269231	23.307692
def assign_region_to_channels(channels, anat, parc_type='aparc', max_approx=3, exclude_regions=None): """Assign a brain region based on the channel location. Parameters ---------- channels : instance of wonambi.attr.chan.Channels channels to assign regions to a...	[ "def", "assign_region_to_channels", "(", "channels", ",", "anat", ",", "parc_type", "=", "'aparc'", ",", "max_approx", "=", "3", ",", "exclude_regions", "=", "None", ")", ":", "for", "one_chan", "in", "channels", ".", "chan", ":", "one_region", ",", "approx"...	43.147059	20.676471

def query(self, model): '''Return a query for ``model`` when it needs to be indexed. ''' session = self.router.session() fields = tuple((f.name for f in model._meta.scalarfields if f.type == 'text')) qs = session.query(model).load_only(*fields) ...

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42.3

15.7

def handle_cable(cable, handler, standalone=True): """\ Emits event from the provided `cable` to the handler. `cable` A cable object. `handler` A ICableHandler instance. `standalone` Indicates if a `start` and `end` event should be issued (default: ``True``). ...

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35.564516

12.516129

def getElementsByAttr(self, attrName, attrValue): ''' getElementsByAttr - Search children of this tag for tags with an attribute name/value pair @param attrName - Attribute name (lowercase) @param attrValue - Attribute value @return - TagCollection of matching e...

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39.2

21.333333

def use_args( self, argmap, req=None, locations=core.Parser.DEFAULT_LOCATIONS, as_kwargs=False, validate=None, error_status_code=None, error_headers=None, ): """Decorator that injects parsed arguments into a view callable. Supports the ...

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43.311475

19.52459

def process_memory_map(attrs=None, where=None): ''' Return process_memory_map information from osquery CLI Example: .. code-block:: bash salt '*' osquery.process_memory_map ''' if __grains__['os_family'] in ['RedHat', 'Debian']: return _osquery_cmd(table='process_memory_map', ...

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32.846154

27.615385

def delete_project(self, project): """ Deletes all versions of a project. First class, maps to Scrapyd's delete project endpoint. """ url = self._build_url(constants.DELETE_PROJECT_ENDPOINT) data = { 'project': project, } self.client.post(url, ...

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32.909091

16.181818

def transition(self, duration, brightness=None): """ Transition wrapper. Short-circuit transition if necessary. :param duration: Duration of transition. :param brightness: Transition to this brightness. """ if duration == 0: if brightness is not None: ...

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32.642857

12.357143

def initinfo(self) -> Tuple[Union[float, int, bool], bool]: """The actual initial value of the given parameter. Some |Parameter| subclasses define another value for class attribute `INIT` than |None| to provide a default value. Let's define a parameter test class and prepare a function...

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32.0625

20.40625

def dump_to_stream(self, cnf, stream, **kwargs): """ Dump config 'cnf' to a file or file-like object 'stream'. :param cnf: Shell variables data to dump :param stream: Shell script file or file like object :param kwargs: backend-specific optional keyword parameters :: dict ...

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43.6

17.4

def getInfo(self): """ Returns a DevInfo instance, a named tuple with the following items: - bustype: one of BUS_USB, BUS_HIL, BUS_BLUETOOTH or BUS_VIRTUAL - vendor: device's vendor number - product: device's product number """ devinfo = _hidraw_devinfo() ...

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42.7

13.9

def update(self, roomId, title=None, **request_parameters): """Update details for a room, by ID. Args: roomId(basestring): The room ID. title(basestring): A user-friendly name for the room. **request_parameters: Additional request parameters (provides ...

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34.83871

23.580645

def hpx_to_axes(h, npix): """ Generate a sequence of bin edge vectors corresponding to the axes of a HPX object.""" x = h.ebins z = np.arange(npix[-1] + 1) return x, z

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26

16.285714

def solve_one(self, expr, constrain=False): """ Concretize a symbolic :class:`~manticore.core.smtlib.expression.Expression` into one solution. :param manticore.core.smtlib.Expression expr: Symbolic value to concretize :param bool constrain: If True, constrain expr to concretized...

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37.5

16.611111

def show_network(self): """! @brief Shows structure of the network: neurons and connections between them. """ dimension = len(self.__location[0]) if (dimension != 3) and (dimension != 2): raise NameError('Network that is located in different ...

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53.392857

35.357143

def auto_data_specs(self): """ Data specs in the sub-study class that are not explicitly provided in the name map """ for spec in self.study_class.data_specs(): if spec.name not in self._name_map: yield spec

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33.5

12

def clearFilter(self): """ Clear all filters. """ if self._dataFrameOriginal is not None: self.layoutAboutToBeChanged.emit() self._dataFrame = self._dataFrameOriginal self._dataFrameOriginal = None self.layoutChanged.emit()

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32.777778

7

def _draw_number(screen, x_offset, y_offset, number, style='class:clock', transparent=False): " Write number at position. " fg = Char(' ', 'class:clock') bg = Char(' ', '') for y, row in enumerate(_numbers[number]): screen_row = screen.data_buffer[y + y_offset] for x, n...

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36.769231

12.769231

def _set_int(self, commands, name): """ set integer value from commands """ if name in commands: try: value = int(commands[name]) setattr(self, name, value) except ValueError: pass

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27.5

7.7

def deleted(self): 'Return datetime.datetime or None if the file isnt deleted' _d = self.folder.attrib.get('deleted', None) if _d is None: return None return dateutil.parser.parse(str(_d))

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43.2

14.4

def provide_label(self): """The name and shape of label provided by this iterator""" return [(k, tuple([self.batch_size] + list(v.shape[1:]))) for k, v in self.label]

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60

21.666667

def endpoint_delete(service, region=None, profile=None, interface=None, **connection_args): ''' Delete endpoints of an Openstack service CLI Examples: .. code-block:: bash salt 'v2' keystone.endpoint_delete nova [region=RegionOne] salt 'v3' keystone.endpoint_delete nova interface=adm...

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38.45

27.05

def _link_rels(obj, fields=None, save=False, overwrite=False): """Populate any database related fields (ForeignKeyField, OneToOneField) that have `_get`ters to populate them with""" if not fields: meta = obj._meta fields = [f.name for f in meta.fields if hasattr(f, 'do_related_class') and not f....

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56.466667

32.2

def ex6_2(n): """ Generate a triangle pulse as described in Example 6-2 of Chapter 6. You need to supply an index array n that covers at least [-2, 5]. The function returns the hard-coded signal of the example. Parameters ---------- n : time index ndarray covering at least -2 ...

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25

19.466667

def get_function(rule, domain, normalize, **parameters): """ Create a quadrature function and set default parameter values. Args: rule (str): Name of quadrature rule defined in ``QUAD_FUNCTIONS``. domain (Dist, numpy.ndarray): Defines ``lower`` and ``upper`` that is ...

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37.616667

17.65

def veoh_download(url, output_dir = '.', merge = False, info_only = False, **kwargs): '''Get item_id''' if re.match(r'http://www.veoh.com/watch/\w+', url): item_id = match1(url, r'http://www.veoh.com/watch/(\w+)') elif re.match(r'http://www.veoh.com/m/watch.php\?v=\.*', url): item_id = match...

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58.777778

29.888889

def make_association(self, record): """ contstruct the association :param record: :return: modeled association of genotype to mammalian phenotype """ model = Model(self.graph) record['relation']['id'] = self.resolve("has phenotype") # define the triple ...

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37.777778

19.2

def _openssl_key_iv(passphrase, salt): """ Returns a (key, iv) tuple that can be used in AES symmetric encryption from a *passphrase* (a byte or unicode string) and *salt* (a byte array). """ def _openssl_kdf(req): if hasattr(passphrase, 'encode'): passwd = passphrase.encode('asc...

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37.772727

13.954545

def _set_suffix_links(self): ''' Sets all suffix links in all nodes in this trie. ''' self._suffix_links_set = True for current, parent in self.bfs(): # skip the root node if parent is None: continue current.longest_prefix = par...

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37.676471

11.264706

def get_client_parameters(username: str, ip_address: str, user_agent: str) -> dict: """ Get query parameters for filtering AccessAttempt queryset. This method returns a dict that guarantees iteration order for keys and values, and can so be used in e.g. the generation of hash keys or other deterministi...

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41.259259

25.037037

def convert_vectored_io_slice_to_final_path_name(local_path, ase): # type: (pathlib.Path, # blobxfer.models.azure.StorageEntity) -> pathlib.Path """Convert vectored io slice to final path name :param pathlib.Path local_path: local path :param blobxfer.models.azure.StorageE...

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44.666667

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def return_max_phrase(run, idx, dictionary): """ Finds the maximal phrase in the run starting from the given index. It uses the dictionary to find sequences of ids that can be merged into a phrase. :param run: a run of ids :param idx: the position in the run to start looking fo...

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def compensate_system_time_change(self, difference): # pragma: no cover, # not with unit tests """If a system time change occurs we have to update properties time related to reflect change :param difference: difference between new time and old time :type difference: :re...

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def reset_index(self, level=None, drop=False, name=None, inplace=False): """ Generate a new DataFrame or Series with the index reset. This is useful when the index needs to be treated as a column, or when the index is meaningless and needs to be reset to the default before anoth...

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def parse_tuple(self, simplified=False, with_condexpr=True, extra_end_rules=None, explicit_parentheses=False): """Works like `parse_expression` but if multiple expressions are delimited by a comma a :class:`~jinja2.nodes.Tuple` node is created. This method could also return a...

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def limit_x( self, limit_lower = None, # float limit_upper = None # float ): """ get or set x limits of the current axes x_min, x_max = limit_x() # return the current limit_x limit_x(x_min, x_max) # set the limit_x to x_min, x_max """ ...

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def get_cell_shift(flow_model): """Get flow direction induced cell shift dict. Args: flow_model: Currently, "TauDEM", "ArcGIS", and "Whitebox" are supported. """ assert flow_model.lower() in FlowModelConst.d8_deltas return FlowModelConst.d8_deltas.get(flow_model.lower...

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def computeMatchProbabilityOmega(k, bMax, theta, nTrials=100): """ The Omega match probability estimates the probability of matching when both vectors have exactly b components in common. This function computes this probability for b=1 to bMax. For each value of b this function: 1) Creates nTrials instan...

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def validate_enum_attribute(self, attribute: str, candidates: Set[Union[str, int, float]]) -> None: """ Validates that the attribute value is among the candidates """ self.add_errors( validate_enum_attribute(self.fully_qualified_name, self._spec, attribute, ca...

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def _prepare_b_jkl_mn(readout_povm, pauli_basis, pre_channel_ops, post_channel_ops, rho0): """ Prepare the coefficient matrix for process tomography. This function uses sparse matrices for much greater efficiency. The coefficient matrix is defined as: .. math:: B_{(jkl)(mn)}=\sum_{r,q}\pi_...

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def from_rotation_matrix(rot, nonorthogonal=True): """Convert input 3x3 rotation matrix to unit quaternion By default, if scipy.linalg is available, this function uses Bar-Itzhack's algorithm to allow for non-orthogonal matrices. [J. Guidance, Vol. 23, No. 6, p. 1085 <http://dx.doi.org/10.2514/2.4654>]...

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def get_hwclock(): ''' Get current hardware clock setting (UTC or localtime) CLI Example: .. code-block:: bash salt '*' timezone.get_hwclock ''' if salt.utils.path.which('timedatectl'): ret = _timedatectl() for line in (x.strip() for x in ret['stdout'].splitlines()): ...

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def tool_classpath_from_products(products, key, scope): """Get a classpath for the tool previously registered under key in the given scope. :param products: The products of the current pants run. :type products: :class:`pants.goal.products.Products` :param string key: The key the tool configuration was...

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def footprints_from_address(address, distance, footprint_type='building', retain_invalid=False): """ Get footprints within some distance north, south, east, and west of an address. Parameters ---------- address : string the address to geocode to a lat-long point distance : numeric ...

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def timeout_at(clock, coro=None, *args): '''Execute the specified coroutine and return its result. However, issue a cancellation request to the calling task after seconds have elapsed. When this happens, a TaskTimeout exception is raised. If coro is None, the result of this function serves as an a...

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def build(templates=None, schemes=None, base_output_dir=None): """Main build function to initiate building process.""" template_dirs = templates or get_template_dirs() scheme_files = get_scheme_files(schemes) base_output_dir = base_output_dir or rel_to_cwd('output') # raise LookupError if there is ...

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def run_plasmid_extractor(self): """ Create and run the plasmid extractor system call """ logging.info('Extracting plasmids') # Define the system call extract_command = 'PlasmidExtractor.py -i {inf} -o {outf} -p {plasdb} -d {db} -t {cpus} -nc' \ .format(inf=se...

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def start(self): """ Start process. :returns: itself :rtype: OutputExecutor .. note:: Process will be considered started, when defined banner will appear in process output. """ super(OutputExecutor, self).start() # get a polling...

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def get(datasets_identifiers, identifier_type='hid', history_id=None): """ Given the history_id that is displayed to the user, this function will download the file[s] from the history and stores them under /import/ Return value[s] are the path[s] to the dataset[s] stored under /import/ "...

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def add_or_replace_filter(self, new_filter): """Replaces null or blank filter or adds filter to existing list.""" if self.filter.lower() in self._FILTERS_TO_REPLACE: self.filter = new_filter elif new_filter not in self.filter.split(";"): self.filter = ";".join([self.filte...

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def traverse(fn, expr, type=ir.Expr, container=Stack): """Utility for generic expression tree traversal Parameters ---------- fn : Callable[[ir.Expr], Tuple[Union[Boolean, Iterable], Any]] This function will be applied on each expressions, it must return a tuple. The first element of th...

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def js_reverse_inline(context): """ Outputs a string of javascript that can generate URLs via the use of the names given to those URLs. """ if 'request' in context: default_urlresolver = get_resolver(getattr(context['request'], 'urlconf', None)) else: default_urlresolver = get_re...

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def hincrby(self, hashkey, attribute, increment=1): """Emulate hincrby.""" return self._hincrby(hashkey, attribute, 'HINCRBY', long, increment)

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def _parse_config(self): """Parses the mlag global configuration Returns: dict: A dict object that is intended to be merged into the resource dict """ config = self.get_block('mlag configuration') cfg = dict() cfg.update(self._parse_domain_id(...

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def mode(self): """ Reading returns the currently selected mode. Writing sets the mode. Generally speaking when the mode changes any sensor or motor devices associated with the port will be removed new ones loaded, however this this will depend on the individual driver implementi...

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def quote_value(value): """ convert values to mysql code for the same mostly delegate directly to the mysql lib, but some exceptions exist """ try: if value == None: return SQL_NULL elif isinstance(value, SQL): return quote_sql(value.template, value.param) ...

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def _compute_term3(self, C, rrup): """ This computes the term f3 in equation 34, page 1021 but corrected according to the erratum. """ f3 = np.zeros_like(rrup) idx_between_70_130 = (rrup > 70) & (rrup <= 130) idx_greater_130 = rrup > 130 f3[idx_between_7...

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def ls_packages(self): """ List packages in this store. """ packages = [] pkgdir = os.path.join(self._path, self.PKG_DIR) if not os.path.isdir(pkgdir): return [] for team in sub_dirs(pkgdir): for user in sub_dirs(self.team_path(team)): ...

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def new(cls, freeform_builder, x, y): """Return a new _LineSegment object ending at point *(x, y)*. Both *x* and *y* are rounded to the nearest integer before use. """ return cls(freeform_builder, int(round(x)), int(round(y)))

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def _credssp_processor(self, context): """ Implements a state machine :return: """ http_response = (yield) credssp_context = self._get_credssp_header(http_response) if credssp_context is None: raise Exception('The remote host did not respond with a \'...

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def sortDictList(dictList,**kwargs): ''' students = [ {'name':'john','class':'A', 'year':15}, {'name':'jane','class':'B', 'year':12}, {'name':'dave','class':'B', 'year':10} ] rslt = sortDictList(students,cond_keys=['name','class','year']) ...

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def find(self, signature = None, order = 0, since = None, until = None, offset = None, limit = None): """ Retrieve all crash dumps in the database, optionally filtering them by signature and timestamp, and/or sorting them by timestamp. Resul...

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def execute(filename, formatted_name): """Renames a file based on the name generated using metadata. :param str filename: absolute path and filename of original file :param str formatted_name: absolute path and new filename """ if os.path.isfile(formatted_name): # If the destination exists...

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def transform_data(function, input_data): ''' a function to apply a function to each value in a nested dictionary :param function: callable function with a single input of any datatype :param input_data: dictionary or list with nested data to transform :return: dictionary or list with data transformed...

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def remove_actor(self, actor, reset_camera=False): """ Removes an actor from the Plotter. Parameters ---------- actor : vtk.vtkActor Actor that has previously added to the Renderer. reset_camera : bool, optional Resets camera so all actors can be...

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def momentum(data, period): """ Momentum. Formula: DATA[i] - DATA[i - period] """ catch_errors.check_for_period_error(data, period) momentum = [data[idx] - data[idx+1-period] for idx in range(period-1, len(data))] momentum = fill_for_noncomputable_vals(data, momentum) return moment...

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def binary(self, new_binary): """Sets location of the browser binary, either by string or ``FirefoxBinary`` instance. """ if not isinstance(new_binary, FirefoxBinary): new_binary = FirefoxBinary(new_binary) self._binary = new_binary

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def _main(self, client, copy_source, bucket, key, upload_id, part_number, extra_args, callbacks, size): """ :param client: The client to use when calling PutObject :param copy_source: The CopySource parameter to use :param bucket: The name of the bucket to upload to ...

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def validate_public_key(value): """ Check that the given value is a valid RSA Public key in either PEM or OpenSSH format. If it is invalid, raises ``django.core.exceptions.ValidationError``. """ is_valid = False exc = None for load in (load_pem_public_key, load_ssh_public_key): if n...

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def accepted(self): """Successfully close the widget and return the loaded model. This method is also a `SLOT`. The dialog will be closed, when the `ok` button is pressed. If a `DataFrame` was loaded, it will be emitted by the signal `load`. """ model = self._previewTab...

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def send_animation( self, chat_id: Union[int, str], animation: str, caption: str = "", parse_mode: str = "", duration: int = 0, width: int = 0, height: int = 0, thumb: str = None, disable_notification: bool = None, reply_to_message_...

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def overlaps(self, other): """Tell if self is partly contained in other.""" return self.network_address in other or ( self.broadcast_address in other or ( other.network_address in self or ( other.broadcast_address in self)))

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def updateflags(self, flags): """ Thin wrapper around build_update(flags=X). This only handles simple status changes, anything like needinfo requestee needs to call build_update + update_bugs directly :param flags: Dictionary of the form {"flagname": "status"}, example ...

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def apply_changes(self, event): """ applies the changes in the various attribute boxes of this object to all highlighted fit objects in the logger, these changes are reflected both in this object and in the Zeq_GUI parent object. @param: event -> the wx.ButtonEvent that triggered this function ...

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def vignetting(xy, f=100, alpha=0, rot=0, tilt=0, cx=50, cy=50): ''' Vignetting equation using the KANG-WEISS-MODEL see http://research.microsoft.com/en-us/um/people/sbkang/publications/eccv00.pdf f - focal length alpha - coefficient in the geometric vignetting factor tilt - tilt angl...

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28.689655

19.931034

def pkginfo_to_metadata(egg_info_path, pkginfo_path): """ Convert .egg-info directory with PKG-INFO to the Metadata 1.3 aka old-draft Metadata 2.0 format. """ pkg_info = read_pkg_info(pkginfo_path) pkg_info.replace_header('Metadata-Version', '2.0') requires_path = os.path.join(egg_info_path,...

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39.5

14.7

def _get_policy_set(self, policy_set_id): """ Get a specific policy set by id. """ uri = self._get_policy_set_uri(guid=policy_set_id) return self.service._get(uri)

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33

3.666667

def pix2sky_vec(self, pixel, r, theta): """ Given and input position and vector in pixel coordinates, calculate the equivalent position and vector in sky coordinates. Parameters ---------- pixel : (int,int) origin of vector in pixel coordinates r : fl...

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31.6

14.866667

def _send_event_to_all(self, action, event): """ Send an event to all the client listening for notifications on all projects :param action: Action name :param event: Event to send """ for project_listeners in self._listeners.values(): for listener in ...

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35

13.909091

def convert_numpy_str_to_uint16(data): """ Converts a numpy.unicode\_ to UTF-16 in numpy.uint16 form. Convert a ``numpy.unicode_`` or an array of them (they are UTF-32 strings) to UTF-16 in the equivalent array of ``numpy.uint16``. The conversion will throw an exception if any characters cannot be ...

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34.924528

21.886792

def basic_auth_header(username, password): '''generate a base64 encoded header to ask for a token. This means base64 encoding a username and password and adding to the Authorization header to identify the client. Parameters ========== username: the username password:...

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32.105263

20.210526

def union(self, *others): r"""Return a new multiset with all elements from the multiset and the others with maximal multiplicities. >>> ms = Multiset('aab') >>> sorted(ms.union('bc')) ['a', 'a', 'b', 'c'] You can also use the ``|`` operator for the same effect. However, the ope...

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40.342857

22.742857

def extend(self, *args, **kwargs): """Extend current MultiDict with more values. This method must be used instead of update. """ self._extend(args, kwargs, 'extend', self._extend_items)

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35.5

13.5

def handleHeader(self, key, value): """Handle header values.""" if key == 'CIMError': self.CIMError = urllib.parse.unquote(value) if key == 'PGErrorDetail': self.PGErrorDetail = urllib.parse.unquote(value)

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35.428571

13.857143

def fix_for_specific_versions(self, rdf_data, to_replace): """ Fixes of the RDF before loading the graph. All of these are workaround to circuvent known issues of the SPM and FSL exporters. """ # Load the graph as is so that we can query g = self.parse(rdf_data) ...

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42.833333

22.1

def embeddedFileDel(self, name): """Delete embedded file by name.""" if self.isClosed or self.isEncrypted: raise ValueError("operation illegal for closed / encrypted doc") return _fitz.Document_embeddedFileDel(self, name)

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42.166667

17.666667

def parse_xml_node(self, node): '''Parse an xml.dom Node object representing a message sending object into this object. ''' self._targets = [] for c in node.getElementsByTagNameNS(RTS_NS, 'targets'): if c.getElementsByTagNameNS(RTS_NS, 'WaitTime'): ne...

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37.25

16.25

def get_policy(self): """ Returns an instance of :attr:`~policy_class`. :return: An instance of the current policy class. :rtype: dockermap.map.policy.base.BasePolicy """ if not self._policy: self._policy = self.policy_class(self._maps, self._clients) ...

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33.1

15.7

def from_tsv(cls, line, field_names, timezone_in_use=pytz.utc, database=None): ''' Create a model instance from a tab-separated line. The line may or may not include a newline. The `field_names` list must match the fields defined in the model, but does not have to include all of them. -...

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42.090909

26.454545

def span(self): """Return a contiguous range that is a superset of this range. Returns: A VersionRange object representing the span of this range. For example, the span of "2+<4|6+<8" would be "2+<8". """ other = VersionRange(None) bound = _Bound(self.bou...

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36.181818

18.818182

def make_app(root, **kw): ''' Utility for creating the Pecan application object. This function should generally be called from the ``setup_app`` function in your project's ``app.py`` file. :param root: A string representing a root controller object (e.g., "myapp.controller.root.Ro...

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39.019608

23.568627

def marshal_dict( obj, types, method=None, fields=None, **m_kwargs ): """ Recursively marshal a Python object to a dict that can be passed to json.{dump,dumps}, a web client, or a web server, document database, etc... Args: obj: object, It's members can be neste...

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29.537313

21.80597

def dp990(self, value=None): """ Corresponds to IDD Field `dp990` Dew-point temperature corresponding to 90.0% annual cumulative frequency of occurrence (cold conditions) Args: value (float): value for IDD Field `dp990` Unit: C if `value` is ...

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35.090909

20.090909

def withSize(cls, minimum, maximum): """Creates a subclass with value size constraint. """ class X(cls): subtypeSpec = cls.subtypeSpec + constraint.ValueSizeConstraint( minimum, maximum) X.__name__ = cls.__name__ return X

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28.2

17.6

def notify(self, message): """ TODO: Add code to lpush to redis stack rpop when stack hits size 'X' """ data = dict( payload=self.payload, attempt=self.attempt, success=self.success, response_message=...

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37.888889

10.444444

def new_driver(browser_name, *args, **kwargs): """Instantiates a new WebDriver instance, determining class by environment variables """ if browser_name == FIREFOX: return webdriver.Firefox(*args, **kwargs) # elif options['local'] and options['browser_name'] == CHROME: ...

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44.25

22.875

def handle(self, key, value): ''' Processes a vaild action info request @param key: The key that matched the request @param value: The value associated with the key ''' # very similar to stop # break down key elements = key.split(":") spiderid = e...

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35.288889

16.4

def main(): """ NAME download_magic.py DESCRIPTION unpacks a magic formatted smartbook .txt file from the MagIC database into the tab delimited MagIC format txt files for use with the MagIC-Py programs. SYNTAX download_magic.py command line options] INPUT ta...

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37

22.555556

def vel_disp(self, kwargs_mass, kwargs_light, kwargs_anisotropy, kwargs_apertur): """ computes the averaged LOS velocity dispersion in the slit (convolved) :param kwargs_mass: mass model parameters (following lenstronomy lens model conventions) :param kwargs_light: deflector light param...

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67.2

36.1

def query_by_account(self, account_id, end_time=None, start_time=None): """ Query by account. List authentication events for a given account. """ path = {} data = {} params = {} # REQUIRED - PATH - account_id """ID""" path["ac...

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39.269231

23.307692

def assign_region_to_channels(channels, anat, parc_type='aparc', max_approx=3, exclude_regions=None): """Assign a brain region based on the channel location. Parameters ---------- channels : instance of wonambi.attr.chan.Channels channels to assign regions to a...

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43.147059

20.676471