kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def aggregationDivide(dividend, divisor): """ Return the result from dividing two dicts that represent date and time. Both dividend and divisor are dicts that contain one or more of the following keys: 'years', 'months', 'weeks', 'days', 'hours', 'minutes', seconds', 'milliseconds', 'microseconds'. For ex...	[ "def", "aggregationDivide", "(", "dividend", ",", "divisor", ")", ":", "# Convert each into microseconds", "dividendMonthSec", "=", "aggregationToMonthsSeconds", "(", "dividend", ")", "divisorMonthSec", "=", "aggregationToMonthsSeconds", "(", "divisor", ")", "# It is a usag...	35.702703	28.459459
def _assign_work_unit(self, node): """Assign a work unit to a node.""" assert self.workqueue # Grab a unit of work scope, work_unit = self.workqueue.popitem(last=False) # Keep track of the assigned work assigned_to_node = self.assigned_work.setdefault(node, default=Orde...	[ "def", "_assign_work_unit", "(", "self", ",", "node", ")", ":", "assert", "self", ".", "workqueue", "# Grab a unit of work", "scope", ",", "work_unit", "=", "self", ".", "workqueue", ".", "popitem", "(", "last", "=", "False", ")", "# Keep track of the assigned w...	34	18.25
def register(func=None, name=None): """ Expose compiler to factory. :param func: the callable to expose :type func: callable :param name: name of format :type name: str It can be used as a decorator:: @register(name='my:validator') def my_validator(obj): if obj...	[ "def", "register", "(", "func", "=", "None", ",", "name", "=", "None", ")", ":", "if", "not", "name", ":", "raise", "CompilationError", "(", "'Name is required'", ")", "if", "not", "func", ":", "return", "partial", "(", "register", ",", "name", "=", "n...	23.96875	16.65625
def _connected(client): """ Connected to AMP server, start listening locally, and give the AMP client a reference to the local listening factory. """ log.msg("Connected to AMP server, starting to listen locally...") localFactory = multiplexing.ProxyingFactory(client, "hello") return listenin...	[ "def", "_connected", "(", "client", ")", ":", "log", ".", "msg", "(", "\"Connected to AMP server, starting to listen locally...\"", ")", "localFactory", "=", "multiplexing", ".", "ProxyingFactory", "(", "client", ",", "\"hello\"", ")", "return", "listeningEndpoint", "...	42.875	15.375
def get_global_rate_limit(self): """Get the global rate limit per client. :rtype: int :returns: The global rate limit for each client. """ r = urllib.request.urlopen('https://archive.org/metadata/iamine-rate-limiter') j = json.loads(r.read().decode('utf-8')) retu...	[ "def", "get_global_rate_limit", "(", "self", ")", ":", "r", "=", "urllib", ".", "request", ".", "urlopen", "(", "'https://archive.org/metadata/iamine-rate-limiter'", ")", "j", "=", "json", ".", "loads", "(", "r", ".", "read", "(", ")", ".", "decode", "(", ...	41	18.666667
def power(self, n): """The matrix power of the channel. Args: n (int): compute the matrix power of the superoperator matrix. Returns: PTM: the matrix power of the SuperOp converted to a PTM channel. Raises: QiskitError: if the input and output dimen...	[ "def", "power", "(", "self", ",", "n", ")", ":", "if", "n", ">", "0", ":", "return", "super", "(", ")", ".", "power", "(", "n", ")", "return", "PTM", "(", "SuperOp", "(", "self", ")", ".", "power", "(", "n", ")", ")" ]	31.25	23.5
def sanitize(name): """ Sanitize the specified ``name`` for use with breathe directives. Parameters ``name`` (:class:`python:str`) The name to be sanitized. Return :class:`python:str` The input ``name`` sanitized to use with breathe directives (primarily for use ...	[ "def", "sanitize", "(", "name", ")", ":", "return", "name", ".", "replace", "(", "\"<\"", ",", "\"<\"", ")", ".", "replace", "(", "\">\"", ",", "\">\"", ")", ".", "replace", "(", "\"&\"", ",", "\"&\"", ")", ".", "replace", "(", "\"< \"", ",...	24.25	25.0625
def route( self, uri, methods=frozenset({"GET"}), host=None, strict_slashes=None, stream=False, version=None, name=None, ): """Create a blueprint route from a decorated function. :param uri: endpoint at which the route will be accessib...	[ "def", "route", "(", "self", ",", "uri", ",", "methods", "=", "frozenset", "(", "{", "\"GET\"", "}", ")", ",", "host", "=", "None", ",", "strict_slashes", "=", "None", ",", "stream", "=", "False", ",", "version", "=", "None", ",", "name", "=", "Non...	29.857143	19.02381
def health_check(self): """ Pull health and alarm information from the device. Purpose: Grab the cpu/mem usage, system/chassis alarms, top 5 \| processes, and states if the primary/backup partitions are on \| different versions. @returns: The output that should be s...	[ "def", "health_check", "(", "self", ")", ":", "output", "=", "'Chassis Alarms:\\n\\t'", "# Grab chassis alarms, system alarms, show chassis routing-engine,", "# 'show system processes extensive', and also xpath to the", "# relevant nodes on each.", "chassis_alarms", "=", "self", ".", ...	50.382979	20.446809
def pseudo_peripheral_node(A): """Find a pseudo peripheral node. Parameters ---------- A : sparse matrix Sparse matrix Returns ------- x : int Locaiton of the node order : array BFS ordering level : array BFS levels Notes ----- Algorithm...	[ "def", "pseudo_peripheral_node", "(", "A", ")", ":", "from", "pyamg", ".", "graph", "import", "breadth_first_search", "n", "=", "A", ".", "shape", "[", "0", "]", "valence", "=", "np", ".", "diff", "(", "A", ".", "indptr", ")", "# select an initial node x, ...	22.591837	21.040816
def build_additional_match(self, ident, node_set): """ handle additional matches supplied by 'has()' calls """ source_ident = ident for key, value in node_set.must_match.items(): if isinstance(value, dict): label = ':' + value['node_class'].__labe...	[ "def", "build_additional_match", "(", "self", ",", "ident", ",", "node_set", ")", ":", "source_ident", "=", "ident", "for", "key", ",", "value", "in", "node_set", ".", "must_match", ".", "items", "(", ")", ":", "if", "isinstance", "(", "value", ",", "dic...	42.761905	19.047619
def bigquery_type(o, timestamp_parser=default_timestamp_parser): """Given a value, return the matching BigQuery type of that value. Must be one of str/unicode/int/float/datetime/record, where record is a dict containing value which have matching BigQuery types. Parameters ---------- o : object ...	[ "def", "bigquery_type", "(", "o", ",", "timestamp_parser", "=", "default_timestamp_parser", ")", ":", "t", "=", "type", "(", "o", ")", "if", "t", "in", "six", ".", "integer_types", ":", "return", "\"integer\"", "elif", "(", "t", "==", "six", ".", "binary...	26.777778	21.555556
def _replace_keyword(self, keyword, replacement, count=0): """ replace_keyword(keyword, replacement[, count]) Walk through the element and its children and look for Str() objects that contains exactly the keyword. Then, replace it. Usually applied to an entire document (a :class:`.Doc` element...	[ "def", "_replace_keyword", "(", "self", ",", "keyword", ",", "replacement", ",", "count", "=", "0", ")", ":", "def", "replace_with_inline", "(", "e", ",", "doc", ")", ":", "if", "type", "(", "e", ")", "==", "Str", "and", "e", ".", "text", "==", "ke...	38.724638	18.57971
def predict_local(self, X, batch_size = -1): """ :param X: X can be a ndarray or list of ndarray if the model has multiple inputs. The first dimension of X should be batch. :param batch_size: total batch size of prediction. :return: a ndarray as the prediction result. ...	[ "def", "predict_local", "(", "self", ",", "X", ",", "batch_size", "=", "-", "1", ")", ":", "jresults", "=", "callBigDlFunc", "(", "self", ".", "bigdl_type", ",", "\"predictLocal\"", ",", "self", ".", "value", ",", "self", ".", "_to_jtensors", "(", "X", ...	40.733333	15.266667
def reference_pix_from_wcs(frames, pixref, origin=1): """Compute reference pixels between frames using WCS information. The sky world coordinates are computed on pixref using the WCS of the first frame in the sequence. Then, the pixel coordinates of the reference sky world-coordinates are compute...	[ "def", "reference_pix_from_wcs", "(", "frames", ",", "pixref", ",", "origin", "=", "1", ")", ":", "result", "=", "[", "]", "with", "frames", "[", "0", "]", ".", "open", "(", ")", "as", "hdulist", ":", "wcsh", "=", "wcs", ".", "WCS", "(", "hdulist",...	31.444444	18.851852
def get_all(self, api_method, collection_name, **kwargs): """ Return all objects in an api_method, handle pagination, and pass kwargs on to the method being called. For example, "users.list" returns an object like: { "members": [{<member_obj>}, {<member_obj_2>}], ...	[ "def", "get_all", "(", "self", ",", "api_method", ",", "collection_name", ",", "", "", "kwargs", ")", ":", "objs", "=", "[", "]", "limit", "=", "250", "# if you don't provide a limit, the slack API won't return a cursor to you", "page", "=", "json", ".", "loads"...	35.386364	22.159091
def items(self): """ :return: a list of name/value attribute pairs sorted by attribute name. """ sorted_keys = sorted(self.keys()) return [(k, self[k]) for k in sorted_keys]	[ "def", "items", "(", "self", ")", ":", "sorted_keys", "=", "sorted", "(", "self", ".", "keys", "(", ")", ")", "return", "[", "(", "k", ",", "self", "[", "k", "]", ")", "for", "k", "in", "sorted_keys", "]" ]	34.666667	12.333333
def send_request(self, request): '''Send a Request. Return a (message, event) pair. The message is an unframed message to send over the network. Wait on the event for the response; which will be in the "result" attribute. Raises: ProtocolError if the request violates the proto...	[ "def", "send_request", "(", "self", ",", "request", ")", ":", "request_id", "=", "next", "(", "self", ".", "_id_counter", ")", "message", "=", "self", ".", "_protocol", ".", "request_message", "(", "request", ",", "request_id", ")", "return", "message", ",...	39.692308	22.615385
def execute_ssh(cls, command, args, *kwargs): """execute_ssh(command, arguments..., pty=False, echo=False) Execute `command` on a remote server. It first calls :meth:`Flow.connect_ssh` using all positional and keyword arguments, then calls :meth:`SSHClient.execute` with the command ...	[ "def", "execute_ssh", "(", "cls", ",", "command", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "pty", "=", "kwargs", ".", "pop", "(", "'pty'", ",", "False", ")", "echo", "=", "kwargs", ".", "pop", "(", "'echo'", ",", "False", ")", "client...	39.875	21.666667
def one_of(inners, arg): """At least one of the inner validators must pass""" for inner in inners: with suppress(com.IbisTypeError, ValueError): return inner(arg) rules_formatted = ', '.join(map(repr, inners)) raise com.IbisTypeError( 'Arg passes neither of the following rul...	[ "def", "one_of", "(", "inners", ",", "arg", ")", ":", "for", "inner", "in", "inners", ":", "with", "suppress", "(", "com", ".", "IbisTypeError", ",", "ValueError", ")", ":", "return", "inner", "(", "arg", ")", "rules_formatted", "=", "', '", ".", "join...	34.8	19.2
def conllu2json(input_data, n_sents=10, use_morphology=False, lang=None): """ Convert conllu files into JSON format for use with train cli. use_morphology parameter enables appending morphology to tags, which is useful for languages such as Spanish, where UD tags are not so rich. Extract NER tags i...	[ "def", "conllu2json", "(", "input_data", ",", "n_sents", "=", "10", ",", "use_morphology", "=", "False", ",", "lang", "=", "None", ")", ":", "# by @dvsrepo, via #11 explosion/spacy-dev-resources", "# by @katarkor", "docs", "=", "[", "]", "sentences", "=", "[", "...	40	18.068966
def update_offer(self, offer_id, offer_dict): """ Updates an offer :param offer_id: the offer id :param offer_dict: dict :return: dict """ return self._create_put_request(resource=OFFERS, billomat_id=offer_id, send_data=offer_dict)	[ "def", "update_offer", "(", "self", ",", "offer_id", ",", "offer_dict", ")", ":", "return", "self", ".", "_create_put_request", "(", "resource", "=", "OFFERS", ",", "billomat_id", "=", "offer_id", ",", "send_data", "=", "offer_dict", ")" ]	31.111111	16.888889
def load(self): """ Return the model from the store """ if self.rid and not self.is_loaded: store = goldman.sess.store self._is_loaded = True self.model = store.find(self.rtype, self.field, self.rid) return self.model	[ "def", "load", "(", "self", ")", ":", "if", "self", ".", "rid", "and", "not", "self", ".", "is_loaded", ":", "store", "=", "goldman", ".", "sess", ".", "store", "self", ".", "_is_loaded", "=", "True", "self", ".", "model", "=", "store", ".", "find"...	27.1	20
def remove_child(self, rhs): """Remove a given child element, specified by name or as element.""" if type(rhs) is XMLElement: lib.lsl_remove_child(self.e, rhs.e) else: lib.lsl_remove_child_n(self.e, rhs)	[ "def", "remove_child", "(", "self", ",", "rhs", ")", ":", "if", "type", "(", "rhs", ")", "is", "XMLElement", ":", "lib", ".", "lsl_remove_child", "(", "self", ".", "e", ",", "rhs", ".", "e", ")", "else", ":", "lib", ".", "lsl_remove_child_n", "(", ...	41	9.666667
def _random_mutation_operator(self, individual, allow_shrink=True): """Perform a replacement, insertion, or shrink mutation on an individual. Parameters ---------- individual: DEAP individual A list of pipeline operators and model parameters that can be compiled ...	[ "def", "_random_mutation_operator", "(", "self", ",", "individual", ",", "allow_shrink", "=", "True", ")", ":", "if", "self", ".", "tree_structure", ":", "mutation_techniques", "=", "[", "partial", "(", "gp", ".", "mutInsert", ",", "pset", "=", "self", ".", ...	49.316667	28.25
def is_cell_empty(self, cell): """Checks if the cell is empty.""" if cell is None: return True elif self._is_cell_empty: return self._is_cell_empty(cell) else: return cell is None	[ "def", "is_cell_empty", "(", "self", ",", "cell", ")", ":", "if", "cell", "is", "None", ":", "return", "True", "elif", "self", ".", "_is_cell_empty", ":", "return", "self", ".", "_is_cell_empty", "(", "cell", ")", "else", ":", "return", "cell", "is", "...	25.75	14
def create_filebase_name(self, group_info, extension='gz', file_name=None): """ Return tuple of resolved destination folder name and file name """ dirname = self.filebase.formatted_dirname(groups=group_info) if not file_name: file_name = self.filebase.prefix_template ...	[ "def", "create_filebase_name", "(", "self", ",", "group_info", ",", "extension", "=", "'gz'", ",", "file_name", "=", "None", ")", ":", "dirname", "=", "self", ".", "filebase", ".", "formatted_dirname", "(", "groups", "=", "group_info", ")", "if", "not", "f...	45.5	18.25
def start_update(self, draw=None, queues=None, update_shared=True): """ Conduct the registered plot updates This method starts the updates from what has been registered by the :meth:`update` method. You can call this method if you did not set the `auto_update` parameter to True ...	[ "def", "start_update", "(", "self", ",", "draw", "=", "None", ",", "queues", "=", "None", ",", "update_shared", "=", "True", ")", ":", "def", "update_the_others", "(", ")", ":", "for", "fmto", "in", "fmtos", ":", "for", "other_fmto", "in", "fmto", ".",...	38.31	17.29
def generate(self, blueprint, context, interactive=True): """Generate a blueprint within this application.""" if not isinstance(blueprint, Blueprint): bp = self.blueprints.get(blueprint) if not bp: raise ValueError('%s is not a valid blueprint' % blueprint) ...	[ "def", "generate", "(", "self", ",", "blueprint", ",", "context", ",", "interactive", "=", "True", ")", ":", "if", "not", "isinstance", "(", "blueprint", ",", "Blueprint", ")", ":", "bp", "=", "self", ".", "blueprints", ".", "get", "(", "blueprint", ")...	30.76	15.36
def create_storage_policy(policy_name, policy_dict, service_instance=None): ''' Creates a storage policy. Supported capability types: scalar, set, range. policy_name Name of the policy to create. The value of the argument will override any existing name in ``policy_dict``. ...	[ "def", "create_storage_policy", "(", "policy_name", ",", "policy_dict", ",", "service_instance", "=", "None", ")", ":", "log", ".", "trace", "(", "'create storage policy \\'%s\\', dict = %s'", ",", "policy_name", ",", "policy_dict", ")", "profile_manager", "=", "salt"...	37.805556	23.583333
def get_as_dataframe(worksheet, evaluate_formulas=False, **options): """ Returns the worksheet contents as a DataFrame. :param worksheet: the worksheet. :param evaluate_formulas: if True, get the value of a cell after formula evaluation; otherwise g...	[ "def", "get_as_dataframe", "(", "worksheet", ",", "evaluate_formulas", "=", "False", ",", "", "", "options", ")", ":", "all_values", "=", "_get_all_values", "(", "worksheet", ",", "evaluate_formulas", ")", "return", "TextParser", "(", "all_values", ",", "*", ...	42.888889	16.666667
def get_tile(self, codepoint: int) -> np.array: """Return a copy of a tile for the given codepoint. If the tile does not exist yet then a blank array will be returned. The tile will have a shape of (height, width, rgba) and a dtype of uint8. Note that most grey-scale tiles will only u...	[ "def", "get_tile", "(", "self", ",", "codepoint", ":", "int", ")", "->", "np", ".", "array", ":", "tile", "=", "np", ".", "zeros", "(", "self", ".", "tile_shape", "+", "(", "4", ",", ")", ",", "dtype", "=", "np", ".", "uint8", ")", "lib", ".", ...	40.25	21.75
def verify_any(df, check, args, kwargs): """ Verify that any of the entries in ``check(df, args, *kwargs)`` is true """ result = check(df, args, **kwargs) try: assert np.any(result) except AssertionError as e: msg = '{} not true for any'.format(check.__name__) e...	[ "def", "verify_any", "(", "df", ",", "check", ",", "", "args", ",", "", "", "kwargs", ")", ":", "result", "=", "check", "(", "df", ",", "", "args", ",", "", "", "kwargs", ")", "try", ":", "assert", "np", ".", "any", "(", "result", ")", ...	27.153846	15.307692
def extract_flask_settings(self): """ Copies SCOUT_* settings in the app into Scout's config lookup """ configs = {} configs["application_root"] = self.app.instance_path for name in current_app.config: if name.startswith("SCOUT_"): value = curr...	[ "def", "extract_flask_settings", "(", "self", ")", ":", "configs", "=", "{", "}", "configs", "[", "\"application_root\"", "]", "=", "self", ".", "app", ".", "instance_path", "for", "name", "in", "current_app", ".", "config", ":", "if", "name", ".", "starts...	39.333333	9.833333
def super_kls(self): """ Determine what kls this group inherits from If default kls should be used, then None is returned """ if not self.kls and self.parent and self.parent.name: return self.parent.kls_name return self.kls	[ "def", "super_kls", "(", "self", ")", ":", "if", "not", "self", ".", "kls", "and", "self", ".", "parent", "and", "self", ".", "parent", ".", "name", ":", "return", "self", ".", "parent", ".", "kls_name", "return", "self", ".", "kls" ]	35.5	12.25
def __init(self): """ initializes the service """ params = { "f" : "json", } json_dict = self._get(self._url, params, securityHandler=self._securityHandler, proxy_port=self._proxy_port, ...	[ "def", "__init", "(", "self", ")", ":", "params", "=", "{", "\"f\"", ":", "\"json\"", ",", "}", "json_dict", "=", "self", ".", "_get", "(", "self", ".", "_url", ",", "params", ",", "securityHandler", "=", "self", ".", "_securityHandler", ",", "proxy_po...	39.333333	15.416667
def resolve_resource_id_refs(self, input_dict, supported_resource_id_refs): """ Resolve resource references within a GetAtt dict. Example: { "Fn::GetAtt": ["LogicalId", "Arn"] } => {"Fn::GetAtt": ["ResolvedLogicalId", "Arn"]} Theoretically, only the first element of the...	[ "def", "resolve_resource_id_refs", "(", "self", ",", "input_dict", ",", "supported_resource_id_refs", ")", ":", "if", "not", "self", ".", "can_handle", "(", "input_dict", ")", ":", "return", "input_dict", "key", "=", "self", ".", "intrinsic_name", "value", "=", ...	43.952381	31.809524
def _map_order_to_ticks(start, end, order, reverse=False): """Map elements from given `order` array to bins ranging from `start` to `end`. """ size = len(order) bounds = np.linspace(start, end, size + 1) if reverse: bounds = bounds[::-1] mapping = list...	[ "def", "_map_order_to_ticks", "(", "start", ",", "end", ",", "order", ",", "reverse", "=", "False", ")", ":", "size", "=", "len", "(", "order", ")", "bounds", "=", "np", ".", "linspace", "(", "start", ",", "end", ",", "size", "+", "1", ")", "if", ...	36.9	12.9
def validate_get_dbs(connection): """ validates the connection object is capable of read access to rethink should be at least one test database by default :param connection: <rethinkdb.net.DefaultConnection> :return: <set> list of databases :raises: ReqlDriverError AssertionError """ r...	[ "def", "validate_get_dbs", "(", "connection", ")", ":", "remote_dbs", "=", "set", "(", "rethinkdb", ".", "db_list", "(", ")", ".", "run", "(", "connection", ")", ")", "assert", "remote_dbs", "return", "remote_dbs" ]	31.076923	16
def authenticate_credentials(self, payload): """ Returns an active user that matches the payload's user id and email. """ User = get_user_model() username = jwt_get_username_from_payload(payload) if not username: msg = _('Invalid payload.') raise ...	[ "def", "authenticate_credentials", "(", "self", ",", "payload", ")", ":", "User", "=", "get_user_model", "(", ")", "username", "=", "jwt_get_username_from_payload", "(", "payload", ")", "if", "not", "username", ":", "msg", "=", "_", "(", "'Invalid payload.'", ...	31.727273	17.272727
def spawn(self, parameters=None, arguments=None, stderr=None, timeout=None, short_option_prefix="-", long_option_prefix="--"): """ Spawn the process defined in `cmd` parameters is converted to options the short and long option prefixes if a list is given as the value, the parameter is r...	[ "def", "spawn", "(", "self", ",", "parameters", "=", "None", ",", "arguments", "=", "None", ",", "stderr", "=", "None", ",", "timeout", "=", "None", ",", "short_option_prefix", "=", "\"-\"", ",", "long_option_prefix", "=", "\"--\"", ")", ":", "stderr", "...	40.066667	25.311111
def sim(self, src, tar, qval=2): r"""Return the cosine similarity of two strings. Parameters ---------- src : str Source string (or QGrams/Counter objects) for comparison tar : str Target string (or QGrams/Counter objects) for comparison qval : in...	[ "def", "sim", "(", "self", ",", "src", ",", "tar", ",", "qval", "=", "2", ")", ":", "if", "src", "==", "tar", ":", "return", "1.0", "if", "not", "src", "or", "not", "tar", ":", "return", "0.0", "q_src", ",", "q_tar", "=", "self", ".", "_get_qgr...	26.512195	19.853659
def bind(self, extension: Extension) -> 'DictMentor': """ Add any predefined or custom extension. Args: extension: Extension to add to the processor. Returns: The DictMentor itself for chaining. """ if not Extension.is_valid_extension(extension):...	[ "def", "bind", "(", "self", ",", "extension", ":", "Extension", ")", "->", "'DictMentor'", ":", "if", "not", "Extension", ".", "is_valid_extension", "(", "extension", ")", ":", "raise", "ValueError", "(", "\"Cannot bind extension due to missing interface requirements\...	30.8	20.266667
def _add_section_default(self, section, parameters): ''' Add the given section with the given paramters to the config. The parameters must be a dictionary with all the keys to add. Each key must be specified as an other dictionary with the following parameters: default, descr...	[ "def", "_add_section_default", "(", "self", ",", "section", ",", "parameters", ")", ":", "section", "=", "section", ".", "lower", "(", ")", "if", "not", "self", ".", "has_section", "(", "section", ")", ":", "self", ".", "add_section", "(", "section", ")"...	45.407407	18
def accessible_organisms(user, orgs): """Get the list of organisms accessible to a user, filtered by `orgs`""" permission_map = { x['organism']: x['permissions'] for x in user.organismPermissions if 'WRITE' in x['permissions'] or 'READ' in x['permissions'] or 'ADMINISTRAT...	[ "def", "accessible_organisms", "(", "user", ",", "orgs", ")", ":", "permission_map", "=", "{", "x", "[", "'organism'", "]", ":", "x", "[", "'permissions'", "]", "for", "x", "in", "user", ".", "organismPermissions", "if", "'WRITE'", "in", "x", "[", "'perm...	34.105263	16.631579
def gettrace(self, burn=0, thin=1, chain=-1, slicing=None): """Return the trace (last by default). Input: - burn (int): The number of transient steps to skip. - thin (int): Keep one in thin. - chain (int): The index of the chain to fetch. If None, return all ch...	[ "def", "gettrace", "(", "self", ",", "burn", "=", "0", ",", "thin", "=", "1", ",", "chain", "=", "-", "1", ",", "slicing", "=", "None", ")", ":", "# warnings.warn('Use Sampler.trace method instead.',", "# DeprecationWarning)", "if", "not", "slicing", ":", "s...	40.516129	15.193548
def clean(): """ Remove all of the files contained in workdir.options.path """ if os.path.isdir(options.path): logger.info('cleaning working directory: ' + options.path) for filename in os.listdir(options.path): filepath = os.path.join(options.path, filename) if os.path.i...	[ "def", "clean", "(", ")", ":", "if", "os", ".", "path", ".", "isdir", "(", "options", ".", "path", ")", ":", "logger", ".", "info", "(", "'cleaning working directory: '", "+", "options", ".", "path", ")", "for", "filename", "in", "os", ".", "listdir", ...	44.8	14.3
def get_as_integer_with_default(self, index, default_value): """ Converts array element into an integer or returns default value if conversion is not possible. :param index: an index of element to get. :param default_value: the default value :return: integer value ot the eleme...	[ "def", "get_as_integer_with_default", "(", "self", ",", "index", ",", "default_value", ")", ":", "value", "=", "self", "[", "index", "]", "return", "IntegerConverter", ".", "to_integer_with_default", "(", "value", ",", "default_value", ")" ]	39.833333	26.833333
def translate(self): """Compile the variable lookup.""" ident = self.ident expr = ex_rvalue(VARIABLE_PREFIX + ident) return [expr], set([ident]), set()	[ "def", "translate", "(", "self", ")", ":", "ident", "=", "self", ".", "ident", "expr", "=", "ex_rvalue", "(", "VARIABLE_PREFIX", "+", "ident", ")", "return", "[", "expr", "]", ",", "set", "(", "[", "ident", "]", ")", ",", "set", "(", ")" ]	35.8	9
def main(): """Install or upgrade setuptools and EasyInstall.""" options = _parse_args() archive = download_setuptools(**_download_args(options)) return _install(archive, _build_install_args(options))	[ "def", "main", "(", ")", ":", "options", "=", "_parse_args", "(", ")", "archive", "=", "download_setuptools", "(", "", "", "_download_args", "(", "options", ")", ")", "return", "_install", "(", "archive", ",", "_build_install_args", "(", "options", ")", ...	42.4	16
def _ParseKey(self, knowledge_base, registry_key, value_name): """Parses a Windows Registry key for a preprocessing attribute. Args: knowledge_base (KnowledgeBase): to fill with preprocessing information. registry_key (dfwinreg.WinRegistryKey): Windows Registry key. value_name (str): name of ...	[ "def", "_ParseKey", "(", "self", ",", "knowledge_base", ",", "registry_key", ",", "value_name", ")", ":", "try", ":", "registry_value", "=", "registry_key", ".", "GetValueByName", "(", "value_name", ")", "except", "IOError", "as", "exception", ":", "raise", "e...	37.652174	20.782609
def has_hints(self): """ True if self provides hints on the cutoff energy. """ for acc in ["low", "normal", "high"]: try: if self.hint_for_accuracy(acc) is None: return False except KeyError: return False ...	[ "def", "has_hints", "(", "self", ")", ":", "for", "acc", "in", "[", "\"low\"", ",", "\"normal\"", ",", "\"high\"", "]", ":", "try", ":", "if", "self", ".", "hint_for_accuracy", "(", "acc", ")", "is", "None", ":", "return", "False", "except", "KeyError"...	29.272727	12.181818
def fromfilenames(filenames, coltype = int): """ Return a segmentlist describing the intervals spanned by the files whose names are given in the list filenames. The segmentlist is constructed by parsing the file names, and the boundaries of each segment are coerced to type coltype. The file names are parsed usi...	[ "def", "fromfilenames", "(", "filenames", ",", "coltype", "=", "int", ")", ":", "pattern", "=", "re", ".", "compile", "(", "r\"-([\\d.]+)-([\\d.]+)\\.[\\w_+#]+\\Z\"", ")", "l", "=", "segments", ".", "segmentlist", "(", ")", "for", "name", "in", "filenames", ...	39.56	20.04
def reduceByKeyAndWindow(self, func, invFunc, windowDuration, slideDuration=None, numPartitions=None, filterFunc=None): """ Return a new DStream by applying incremental `reduceByKey` over a sliding window. The reduced value of over a new window is calculated using t...	[ "def", "reduceByKeyAndWindow", "(", "self", ",", "func", ",", "invFunc", ",", "windowDuration", ",", "slideDuration", "=", "None", ",", "numPartitions", "=", "None", ",", "filterFunc", "=", "None", ")", ":", "self", ".", "_validate_window_param", "(", "windowD...	53.517857	28.089286
def IsValidLanguageCode(lang): """ Checks the validity of a language code value: - checks whether the code, as lower case, is well formed and valid BCP47 using the pybcp47 module """ bcp47_obj = parser.ParseLanguage(str(lang.lower())) return bcp47_obj.IsWellformed() and bcp47_obj.IsValid()	[ "def", "IsValidLanguageCode", "(", "lang", ")", ":", "bcp47_obj", "=", "parser", ".", "ParseLanguage", "(", "str", "(", "lang", ".", "lower", "(", ")", ")", ")", "return", "bcp47_obj", ".", "IsWellformed", "(", ")", "and", "bcp47_obj", ".", "IsValid", "(...	37.875	11.625
def update_build(self, build, project, build_id, retry=None): """UpdateBuild. Updates a build. :param :class:`<Build> <azure.devops.v5_0.build.models.Build>` build: The build. :param str project: Project ID or project name :param int build_id: The ID of the build. :param ...	[ "def", "update_build", "(", "self", ",", "build", ",", "project", ",", "build_id", ",", "retry", "=", "None", ")", ":", "route_values", "=", "{", "}", "if", "project", "is", "not", "None", ":", "route_values", "[", "'project'", "]", "=", "self", ".", ...	50.16	18.72
def fletcher_checksum(data, offset): """ Fletcher Checksum -- Refer to RFC1008 calling with offset == _FLETCHER_CHECKSUM_VALIDATE will validate the checksum without modifying the buffer; a valid checksum returns 0. """ c0 = 0 c1 = 0 pos = 0 length = len(data) data = bytearray(da...	[ "def", "fletcher_checksum", "(", "data", ",", "offset", ")", ":", "c0", "=", "0", "c1", "=", "0", "pos", "=", "0", "length", "=", "len", "(", "data", ")", "data", "=", "bytearray", "(", "data", ")", "data", "[", "offset", ":", "offset", "+", "2",...	22.575758	19.666667
def consultar_sat(retorno): """Constrói uma :class:`RespostaSAT` para o retorno (unicode) da função :meth:`~satcfe.base.FuncoesSAT.consultar_sat`. """ resposta = analisar_retorno(forcar_unicode(retorno), funcao='ConsultarSAT') if resposta.EEEEE not in ('08000',): ...	[ "def", "consultar_sat", "(", "retorno", ")", ":", "resposta", "=", "analisar_retorno", "(", "forcar_unicode", "(", "retorno", ")", ",", "funcao", "=", "'ConsultarSAT'", ")", "if", "resposta", ".", "EEEEE", "not", "in", "(", "'08000'", ",", ")", ":", "raise...	42.444444	8.444444
def _handleBulletWidth(bulletText, style, maxWidths): """ work out bullet width and adjust maxWidths[0] if neccessary """ if bulletText: if isinstance(bulletText, basestring): bulletWidth = stringWidth(bulletText, style.bulletFontName, style.bulletFontSize) else: ...	[ "def", "_handleBulletWidth", "(", "bulletText", ",", "style", ",", "maxWidths", ")", ":", "if", "bulletText", ":", "if", "isinstance", "(", "bulletText", ",", "basestring", ")", ":", "bulletWidth", "=", "stringWidth", "(", "bulletText", ",", "style", ".", "b...	45.882353	19.294118
def add_controller(self, key, controller): """Add child controller The passed controller is registered as child of self. The register_actions method of the child controller is called, allowing the child controller to register shortcut callbacks. :param key: Name of the controller (uniq...	[ "def", "add_controller", "(", "self", ",", "key", ",", "controller", ")", ":", "assert", "isinstance", "(", "controller", ",", "ExtendedController", ")", "controller", ".", "parent", "=", "self", "self", ".", "__child_controllers", "[", "key", "]", "=", "con...	54.6	28.866667
def _scalar_power(self, f, p, out): """Compute ``p``-th power of ``f`` for ``p`` scalar.""" # Avoid infinite recursions by making a copy of the function f_copy = f.copy() def pow_posint(x, n): """Power function for positive integer ``n``, out-of-place.""" if isin...	[ "def", "_scalar_power", "(", "self", ",", "f", ",", "p", ",", "out", ")", ":", "# Avoid infinite recursions by making a copy of the function", "f_copy", "=", "f", ".", "copy", "(", ")", "def", "pow_posint", "(", "x", ",", "n", ")", ":", "\"\"\"Power function f...	35.581395	15.069767
def numberize(string): '''Turns a string into a number (``int`` or ``float``) if it's only a number (ignoring spaces), otherwise returns the string. For example, ``"5 "`` becomes ``5`` and ``"2 ton"`` remains ``"2 ton"``''' if not isinstance(string,basestring): return string just_int = r'^\s*[-+...	[ "def", "numberize", "(", "string", ")", ":", "if", "not", "isinstance", "(", "string", ",", "basestring", ")", ":", "return", "string", "just_int", "=", "r'^\\s[-+]?\\d+\\s$'", "just_float", "=", "r'^\\s[-+]?\\d+\\.(\\d+)?\\s$'", "if", "re", ".", "match", "(...	42.333333	19.666667
def get_rgb_from_xy_and_brightness(self, x, y, bri=1): """Inverse of `get_xy_point_from_rgb`. Returns (r, g, b) for given x, y values. Implementation of the instructions found on the Philips Hue iOS SDK docs: http://goo.gl/kWKXKl """ # The xy to color conversion is almost the same, but i...	[ "def", "get_rgb_from_xy_and_brightness", "(", "self", ",", "x", ",", "y", ",", "bri", "=", "1", ")", ":", "# The xy to color conversion is almost the same, but in reverse order.", "# Check if the xy value is within the color gamut of the lamp.", "# If not continue with step 2, otherw...	45.069767	25.674419
def notebook_to_md(notebook): """Convert a notebook to its Markdown representation, using Pandoc""" tmp_file = tempfile.NamedTemporaryFile(delete=False) tmp_file.write(ipynb_writes(notebook).encode('utf-8')) tmp_file.close() pandoc(u'--from ipynb --to markdown -s --atx-headers --wrap=preserve --pre...	[ "def", "notebook_to_md", "(", "notebook", ")", ":", "tmp_file", "=", "tempfile", ".", "NamedTemporaryFile", "(", "delete", "=", "False", ")", "tmp_file", ".", "write", "(", "ipynb_writes", "(", "notebook", ")", ".", "encode", "(", "'utf-8'", ")", ")", "tmp...	39.846154	23.615385
def ts_to_dt_str(ts, dt_format='%Y-%m-%d %H:%M:%S'): """ 时间戳转换为日期字符串 Args: ts: 待转换的时间戳 dt_format: 目标日期字符串格式 Returns: 日期字符串 """ return datetime.datetime.fromtimestamp(int(ts)).strftime(dt_format)	[ "def", "ts_to_dt_str", "(", "ts", ",", "dt_format", "=", "'%Y-%m-%d %H:%M:%S'", ")", ":", "return", "datetime", ".", "datetime", ".", "fromtimestamp", "(", "int", "(", "ts", ")", ")", ".", "strftime", "(", "dt_format", ")" ]	20.545455	21.272727
def classify_intersection9(s, curve1, curve2): """Image for :func:`._surface_helpers.classify_intersection` docstring.""" if NO_IMAGES: return surface1 = bezier.Surface.from_nodes( np.asfortranarray( [ [0.0, 20.0, 40.0, 10.0, 30.0, 20.0], [0.0, 40...	[ "def", "classify_intersection9", "(", "s", ",", "curve1", ",", "curve2", ")", ":", "if", "NO_IMAGES", ":", "return", "surface1", "=", "bezier", ".", "Surface", ".", "from_nodes", "(", "np", ".", "asfortranarray", "(", "[", "[", "0.0", ",", "20.0", ",", ...	37.627907	16.232558
def augment(self, dct: NonAugmentedDict, document: Optional[YamlDocument] = None) -> AugmentedDict: """ Augments the given dictionary by using all the bound extensions. Args: dct: Dictionary to augment. document: The document the dictionary was loaded fro...	[ "def", "augment", "(", "self", ",", "dct", ":", "NonAugmentedDict", ",", "document", ":", "Optional", "[", "YamlDocument", "]", "=", "None", ")", "->", "AugmentedDict", ":", "Validator", ".", "instance_of", "(", "dict", ",", "raise_ex", "=", "True", ",", ...	33.40625	14.65625
def has_annotation(self, annotation: str) -> bool: """Check if this annotation is defined.""" return ( self.has_enumerated_annotation(annotation) or self.has_regex_annotation(annotation) or self.has_local_annotation(annotation) )	[ "def", "has_annotation", "(", "self", ",", "annotation", ":", "str", ")", "->", "bool", ":", "return", "(", "self", ".", "has_enumerated_annotation", "(", "annotation", ")", "or", "self", ".", "has_regex_annotation", "(", "annotation", ")", "or", "self", "."...	40.428571	14.714286
def has_all_changes_covered(self): """ Return `True` if all changes have been covered, `False` otherwise. """ for filename in self.files(): for hunk in self.file_source_hunks(filename): for line in hunk: if line.reason is None: ...	[ "def", "has_all_changes_covered", "(", "self", ")", ":", "for", "filename", "in", "self", ".", "files", "(", ")", ":", "for", "hunk", "in", "self", ".", "file_source_hunks", "(", "filename", ")", ":", "for", "line", "in", "hunk", ":", "if", "line", "."...	39.083333	10.083333
def strip_querystring(url): """Remove the querystring from the end of a URL.""" p = six.moves.urllib.parse.urlparse(url) return p.scheme + "://" + p.netloc + p.path	[ "def", "strip_querystring", "(", "url", ")", ":", "p", "=", "six", ".", "moves", ".", "urllib", ".", "parse", ".", "urlparse", "(", "url", ")", "return", "p", ".", "scheme", "+", "\"://\"", "+", "p", ".", "netloc", "+", "p", ".", "path" ]	43.25	6
def R(self, value): """ measurement uncertainty""" self._R = value self._R1_2 = cholesky(self._R, lower=True)	[ "def", "R", "(", "self", ",", "value", ")", ":", "self", ".", "_R", "=", "value", "self", ".", "_R1_2", "=", "cholesky", "(", "self", ".", "_R", ",", "lower", "=", "True", ")" ]	32.5	12
def matches_video_filename(self, video): """ Detect whether the filename of videofile matches with this SubtitleFile. :param video: VideoFile instance :return: True if match """ vid_fn = video.get_filename() vid_base, _ = os.path.splitext(vid_fn) vid_base...	[ "def", "matches_video_filename", "(", "self", ",", "video", ")", ":", "vid_fn", "=", "video", ".", "get_filename", "(", ")", "vid_base", ",", "_", "=", "os", ".", "path", ".", "splitext", "(", "vid_fn", ")", "vid_base", "=", "vid_base", ".", "lower", "...	33.871795	16.641026
def slice_reStructuredText(input, output): """ Slices given reStructuredText file. :param input: ReStructuredText file to slice. :type input: unicode :param output: Directory to output sliced reStructuredText files. :type output: unicode :return: Definition success. :rtype: bool """...	[ "def", "slice_reStructuredText", "(", "input", ",", "output", ")", ":", "LOGGER", ".", "info", "(", "\"{0} \| Slicing '{1}' file!\"", ".", "format", "(", "slice_reStructuredText", ".", "__name__", ",", "input", ")", ")", "file", "=", "File", "(", "input", ")", ...	40.206897	26.103448
async def verify_chain_of_trust(chain): """Build and verify the chain of trust. Args: chain (ChainOfTrust): the chain we're operating on Raises: CoTError: on failure """ log_path = os.path.join(chain.context.config["task_log_dir"], "chain_of_trust.log") scriptworker_log = logg...	[ "async", "def", "verify_chain_of_trust", "(", "chain", ")", ":", "log_path", "=", "os", ".", "path", ".", "join", "(", "chain", ".", "context", ".", "config", "[", "\"task_log_dir\"", "]", ",", "\"chain_of_trust.log\"", ")", "scriptworker_log", "=", "logging",...	39.804878	18.04878
def count(self): """ Compute count of group, excluding missing values """ from pandas.core.dtypes.missing import _isna_ndarraylike as _isna data, _ = self._get_data_to_aggregate() ids, _, ngroups = self.grouper.group_info mask = ids != -1 val = ((mask & ~_isna(np.atleas...	[ "def", "count", "(", "self", ")", ":", "from", "pandas", ".", "core", ".", "dtypes", ".", "missing", "import", "_isna_ndarraylike", "as", "_isna", "data", ",", "_", "=", "self", ".", "_get_data_to_aggregate", "(", ")", "ids", ",", "_", ",", "ngroups", ...	37.235294	21.235294
def iter_regions(self): """ Return an iterable list of all region files. Use this function if you only want to loop through each region files once, and do not want to cache the results. """ # TODO: Implement BoundingBox # TODO: Implement sort order for x,z in self...	[ "def", "iter_regions", "(", "self", ")", ":", "# TODO: Implement BoundingBox", "# TODO: Implement sort order", "for", "x", ",", "z", "in", "self", ".", "regionfiles", ".", "keys", "(", ")", ":", "close_after_use", "=", "False", "if", "(", "x", ",", "z", ")",...	40.454545	13.727273
def base_url(klass, space_id, parent_resource_id, resource_url='entries', resource_id=None, environment_id=None): """ Returns the URI for the snapshot. """ return "spaces/{0}{1}/{2}/{3}/snapshots/{4}".format( space_id, '/environments/{0}'.format(environment_id) i...	[ "def", "base_url", "(", "klass", ",", "space_id", ",", "parent_resource_id", ",", "resource_url", "=", "'entries'", ",", "resource_id", "=", "None", ",", "environment_id", "=", "None", ")", ":", "return", "\"spaces/{0}{1}/{2}/{3}/snapshots/{4}\"", ".", "format", "...	39.416667	23.25
def impersonate_user(self, username, password): """delegate to personate_user method """ if self.personate_user: self.personate_user.impersonate_user(username, password)	[ "def", "impersonate_user", "(", "self", ",", "username", ",", "password", ")", ":", "if", "self", ".", "personate_user", ":", "self", ".", "personate_user", ".", "impersonate_user", "(", "username", ",", "password", ")" ]	40.2	8.8
def get_target_transcript(self,min_intron=1): """Get the mapping of to the target strand :returns: Transcript mapped to target :rtype: Transcript """ if min_intron < 1: sys.stderr.write("ERROR minimum intron should be 1 base or longer\n") sys.exit() #tx = Transcript() rngs = [...	[ "def", "get_target_transcript", "(", "self", ",", "min_intron", "=", "1", ")", ":", "if", "min_intron", "<", "1", ":", "sys", ".", "stderr", ".", "write", "(", "\"ERROR minimum intron should be 1 base or longer\\n\"", ")", "sys", ".", "exit", "(", ")", "#tx = ...	37.125	15.40625
def exit(self, signal=None, frame=None): """ Properly close the AMQP connections """ self.input_channel.close() self.client_queue.close() self.connection.close() log.info("Worker exiting") sys.exit(0)	[ "def", "exit", "(", "self", ",", "signal", "=", "None", ",", "frame", "=", "None", ")", ":", "self", ".", "input_channel", ".", "close", "(", ")", "self", ".", "client_queue", ".", "close", "(", ")", "self", ".", "connection", ".", "close", "(", ")...	28.444444	5.777778
def _CalculateDOWDelta(self, wd, wkdy, offset, style, currentDayStyle): """ Based on the C{style} and C{currentDayStyle} determine what day-of-week value is to be returned. @type wd: integer @param wd: day-of-week value for the current day @typ...	[ "def", "_CalculateDOWDelta", "(", "self", ",", "wd", ",", "wkdy", ",", "offset", ",", "style", ",", "currentDayStyle", ")", ":", "diffBase", "=", "wkdy", "-", "wd", "origOffset", "=", "offset", "if", "offset", "==", "2", ":", "# no modifier is present.", "...	37.307692	15.769231
def delete_fixed_rate_shipping_by_id(cls, fixed_rate_shipping_id, **kwargs): """Delete FixedRateShipping Delete an instance of FixedRateShipping by its ID. This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async=True >>> t...	[ "def", "delete_fixed_rate_shipping_by_id", "(", "cls", ",", "fixed_rate_shipping_id", ",", "", "", "kwargs", ")", ":", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async'", ")", ":", "return", "cls", ".", ...	47.52381	25.714286
def add_data_point(self, x, y): """Adds a data point to the series. :param x: The numerical x value to be added. :param y: The numerical y value to be added.""" if not is_numeric(x): raise TypeError("x value must be numeric, not '%s'" % str(x)) if not is_numeric(y):...	[ "def", "add_data_point", "(", "self", ",", "x", ",", "y", ")", ":", "if", "not", "is_numeric", "(", "x", ")", ":", "raise", "TypeError", "(", "\"x value must be numeric, not '%s'\"", "%", "str", "(", "x", ")", ")", "if", "not", "is_numeric", "(", "y", ...	39.5	16.5
def _sendmsg(self,method,url,headers): '''发送消息''' msg = '%s %s %s'%(method,url,RTSP_VERSION) headers['User-Agent'] = DEFAULT_USERAGENT cseq = self._next_seq() self._cseq_map[cseq] = method headers['CSeq'] = str(cseq) if self._session_id: headers['Session'] = self....	[ "def", "_sendmsg", "(", "self", ",", "method", ",", "url", ",", "headers", ")", ":", "msg", "=", "'%s %s %s'", "%", "(", "method", ",", "url", ",", "RTSP_VERSION", ")", "headers", "[", "'User-Agent'", "]", "=", "DEFAULT_USERAGENT", "cseq", "=", "self", ...	41.647059	12.117647
def pprint(walker): """Pretty printer for tree walkers Takes a TreeWalker instance and pretty prints the output of walking the tree. :arg walker: a TreeWalker instance """ output = [] indent = 0 for token in concatenateCharacterTokens(walker): type = token["type"] if type ...	[ "def", "pprint", "(", "walker", ")", ":", "output", "=", "[", "]", "indent", "=", "0", "for", "token", "in", "concatenateCharacterTokens", "(", "walker", ")", ":", "type", "=", "token", "[", "\"type\"", "]", "if", "type", "in", "(", "\"StartTag\"", ","...	37.92	19.186667
def set_description(self, id, **kwargs): # noqa: E501 """Set description associated with a specific source # noqa: E501 # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> thread = api.set...	[ "def", "set_description", "(", "self", ",", "id", ",", "", "", "kwargs", ")", ":", "# noqa: E501", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async_req'", ")", ":", "return", "self", ".", "set_descript...	40.636364	18.045455
def calculate_euc_distance(a, b): """Calculates Eclidian distances from two points a and b Args ---- a : (:obj:`float`, :obj:`float`) Two-dimension tuple (x1,y1) b : (:obj:`float`, :obj:`float`) Two-dimension tuple (x2,y2) Returns ------- float the distance....	[ "def", "calculate_euc_distance", "(", "a", ",", "b", ")", ":", "x1", ",", "y1", "=", "a", "x2", ",", "y2", "=", "b", "return", "int", "(", "round", "(", "math", ".", "sqrt", "(", "(", "(", "x1", "-", "x2", ")", "**", "2", ")", "+", "(", "("...	21.736842	20.842105
def pg_dsn(settings: Settings) -> str: """ :param settings: settings including connection settings :return: DSN url suitable for sqlalchemy and aiopg. """ return str(URL( database=settings.DB_NAME, password=settings.DB_PASSWORD, host=settings.DB_HOST, port=settings.DB...	[ "def", "pg_dsn", "(", "settings", ":", "Settings", ")", "->", "str", ":", "return", "str", "(", "URL", "(", "database", "=", "settings", ".", "DB_NAME", ",", "password", "=", "settings", ".", "DB_PASSWORD", ",", "host", "=", "settings", ".", "DB_HOST", ...	29.769231	10.384615
def register(self, name): """Return decorator to register item with a specific name.""" def decorator(func): """Register decorated function.""" self[name] = func return func return decorator	[ "def", "register", "(", "self", ",", "name", ")", ":", "def", "decorator", "(", "func", ")", ":", "\"\"\"Register decorated function.\"\"\"", "self", "[", "name", "]", "=", "func", "return", "func", "return", "decorator" ]	30.5	13.875
def deserialize(encoded, **kwargs): '''Construct a muda transformation from a JSON encoded string. Parameters ---------- encoded : str JSON encoding of the transformation or pipeline kwargs Additional keyword arguments to `jsonpickle.decode()` Returns ------- obj ...	[ "def", "deserialize", "(", "encoded", ",", "", "", "kwargs", ")", ":", "params", "=", "jsonpickle", ".", "decode", "(", "encoded", ",", "", "", "kwargs", ")", "return", "__reconstruct", "(", "params", ")" ]	19.8125	25.125
def be_array_from_bytes(fmt, data): """ Reads an array from bytestring with big-endian data. """ arr = array.array(str(fmt), data) return fix_byteorder(arr)	[ "def", "be_array_from_bytes", "(", "fmt", ",", "data", ")", ":", "arr", "=", "array", ".", "array", "(", "str", "(", "fmt", ")", ",", "data", ")", "return", "fix_byteorder", "(", "arr", ")" ]	28.5	5.833333
def initialize_repo(self): """ Clones repository & sets up usernames. """ logging.info('Repo {} doesn\'t exist. Cloning...'.format(self.repo_dir)) clone_args = ['git', 'clone'] if self.depth and self.depth > 0: clone_args.extend(['--depth', str(self.depth)]) ...	[ "def", "initialize_repo", "(", "self", ")", ":", "logging", ".", "info", "(", "'Repo {} doesn\\'t exist. Cloning...'", ".", "format", "(", "self", ".", "repo_dir", ")", ")", "clone_args", "=", "[", "'git'", ",", "'clone'", "]", "if", "self", ".", "depth", ...	49.066667	20.533333
def api_key_from_file(url): """ Check bugzillarc for an API key for this Bugzilla URL. """ path = os.path.expanduser('~/.config/python-bugzilla/bugzillarc') cfg = SafeConfigParser() cfg.read(path) domain = urlparse(url)[1] if domain not in cfg.sections(): return None if not cfg.has_o...	[ "def", "api_key_from_file", "(", "url", ")", ":", "path", "=", "os", ".", "path", ".", "expanduser", "(", "'~/.config/python-bugzilla/bugzillarc'", ")", "cfg", "=", "SafeConfigParser", "(", ")", "cfg", ".", "read", "(", "path", ")", "domain", "=", "urlparse"...	35.727273	12.818182
def add_shapes(self,**kwargs): """ Add a shape to the QuantFigure. kwargs : hline : int, list or dict Draws a horizontal line at the indicated y position(s) Extra parameters can be passed in the form of a dictionary (see shapes) vline : int, list or dict Draws a vertical line at the ...	[ "def", "add_shapes", "(", "self", ",", "", "", "kwargs", ")", ":", "kwargs", "=", "utils", ".", "check_kwargs", "(", "kwargs", ",", "get_shapes_kwargs", "(", ")", ",", "{", "}", ",", "clean_origin", "=", "True", ")", "for", "k", ",", "v", "in", "...	29.853659	10.731707
def rename(self, **kwargs): '''Rename series in the group.''' for old, new in kwargs.iteritems(): if old in self.groups: self.groups[new] = self.groups[old] del self.groups[old]	[ "def", "rename", "(", "self", ",", "", "", "kwargs", ")", ":", "for", "old", ",", "new", "in", "kwargs", ".", "iteritems", "(", ")", ":", "if", "old", "in", "self", ".", "groups", ":", "self", ".", "groups", "[", "new", "]", "=", "self", ".",...	38.666667	6.333333
def N50(arr): """N50 often used in assessing denovo assembly. :param arr: list of numbers :type arr: number[] a number array :return: N50 :rtype: float """ if len(arr) == 0: sys.stderr.write("ERROR: no content in array to take N50\n") sys.exit() tot = sum(arr) half = float(tot)/float(2) cu...	[ "def", "N50", "(", "arr", ")", ":", "if", "len", "(", "arr", ")", "==", "0", ":", "sys", ".", "stderr", ".", "write", "(", "\"ERROR: no content in array to take N50\\n\"", ")", "sys", ".", "exit", "(", ")", "tot", "=", "sum", "(", "arr", ")", "half",...	22.47619	19.52381
def member_add(self, stream_id, user_id): ''' add a user to a stream ''' req_hook = 'pod/v1/room/' + str(stream_id) + '/membership/add' req_args = '{ "id": %s }' % user_id status_code, response = self.__rest__.POST_query(req_hook, req_args) self.logger.debug('%s: %s' % (status_co...	[ "def", "member_add", "(", "self", ",", "stream_id", ",", "user_id", ")", ":", "req_hook", "=", "'pod/v1/room/'", "+", "str", "(", "stream_id", ")", "+", "'/membership/add'", "req_args", "=", "'{ \"id\": %s }'", "%", "user_id", "status_code", ",", "response", "...	52.142857	13.857143
def Lines(startPoints, endPoints=None, scale=1, lw=1, c=None, alpha=1, dotted=False): """ Build the line segments between two lists of points `startPoints` and `endPoints`. `startPoints` can be also passed in the form ``[[point1, point2], ...]``. :param float scale: apply a rescaling factor to the leng...	[ "def", "Lines", "(", "startPoints", ",", "endPoints", "=", "None", ",", "scale", "=", "1", ",", "lw", "=", "1", ",", "c", "=", "None", ",", "alpha", "=", "1", ",", "dotted", "=", "False", ")", ":", "if", "endPoints", "is", "not", "None", ":", "...	31.216216	21
def get_assessment_ids(self): """Gets the Ids of any assessments associated with this activity. return: (osid.id.IdList) - list of assessment Ids raise: IllegalState - is_assessment_based_activity() is false compliance: mandatory - This method must be implemented. """ ...	[ "def", "get_assessment_ids", "(", "self", ")", ":", "if", "not", "self", ".", "is_assessment_based_activity", "(", ")", ":", "raise", "IllegalState", "(", ")", "else", ":", "return", "[", "Id", "(", "a", ")", "for", "a", "in", "self", ".", "_my_map", "...	38.75	19.416667
def get_readable_string(integer): r""" Convert an integer to a readable 2-character representation. This is useful for reversing examples: 41 == ".A", 13 == "\n", 20 (space) == "__" Returns a readable 2-char representation of an int. """ if integer == 9: #\t readable_strin...	[ "def", "get_readable_string", "(", "integer", ")", ":", "if", "integer", "==", "9", ":", "#\\t", "readable_string", "=", "\"\\\\t\"", "elif", "integer", "==", "10", ":", "#\\r", "readable_string", "=", "\"\\\\r\"", "elif", "integer", "==", "13", ":", "#\\n",...	35.75	15.7

def aggregationDivide(dividend, divisor): """ Return the result from dividing two dicts that represent date and time. Both dividend and divisor are dicts that contain one or more of the following keys: 'years', 'months', 'weeks', 'days', 'hours', 'minutes', seconds', 'milliseconds', 'microseconds'. For ex...

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35.702703

28.459459

def _assign_work_unit(self, node): """Assign a work unit to a node.""" assert self.workqueue # Grab a unit of work scope, work_unit = self.workqueue.popitem(last=False) # Keep track of the assigned work assigned_to_node = self.assigned_work.setdefault(node, default=Orde...

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def register(func=None, name=None): """ Expose compiler to factory. :param func: the callable to expose :type func: callable :param name: name of format :type name: str It can be used as a decorator:: @register(name='my:validator') def my_validator(obj): if obj...

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def _connected(client): """ Connected to AMP server, start listening locally, and give the AMP client a reference to the local listening factory. """ log.msg("Connected to AMP server, starting to listen locally...") localFactory = multiplexing.ProxyingFactory(client, "hello") return listenin...

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42.875

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def get_global_rate_limit(self): """Get the global rate limit per client. :rtype: int :returns: The global rate limit for each client. """ r = urllib.request.urlopen('https://archive.org/metadata/iamine-rate-limiter') j = json.loads(r.read().decode('utf-8')) retu...

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def power(self, n): """The matrix power of the channel. Args: n (int): compute the matrix power of the superoperator matrix. Returns: PTM: the matrix power of the SuperOp converted to a PTM channel. Raises: QiskitError: if the input and output dimen...

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def sanitize(name): """ Sanitize the specified ``name`` for use with breathe directives. **Parameters** ``name`` (:class:`python:str`) The name to be sanitized. **Return** :class:`python:str` The input ``name`` sanitized to use with breathe directives (primarily for use ...

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def route( self, uri, methods=frozenset({"GET"}), host=None, strict_slashes=None, stream=False, version=None, name=None, ): """Create a blueprint route from a decorated function. :param uri: endpoint at which the route will be accessib...

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def health_check(self): """ Pull health and alarm information from the device. Purpose: Grab the cpu/mem usage, system/chassis alarms, top 5 | processes, and states if the primary/backup partitions are on | different versions. @returns: The output that should be s...

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50.382979

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def pseudo_peripheral_node(A): """Find a pseudo peripheral node. Parameters ---------- A : sparse matrix Sparse matrix Returns ------- x : int Locaiton of the node order : array BFS ordering level : array BFS levels Notes ----- Algorithm...

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def build_additional_match(self, ident, node_set): """ handle additional matches supplied by 'has()' calls """ source_ident = ident for key, value in node_set.must_match.items(): if isinstance(value, dict): label = ':' + value['node_class'].__labe...

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def bigquery_type(o, timestamp_parser=default_timestamp_parser): """Given a value, return the matching BigQuery type of that value. Must be one of str/unicode/int/float/datetime/record, where record is a dict containing value which have matching BigQuery types. Parameters ---------- o : object ...

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def _replace_keyword(self, keyword, replacement, count=0): """ replace_keyword(keyword, replacement[, count]) Walk through the element and its children and look for Str() objects that contains exactly the keyword. Then, replace it. Usually applied to an entire document (a :class:`.Doc` element...

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38.724638

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def predict_local(self, X, batch_size = -1): """ :param X: X can be a ndarray or list of ndarray if the model has multiple inputs. The first dimension of X should be batch. :param batch_size: total batch size of prediction. :return: a ndarray as the prediction result. ...

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def reference_pix_from_wcs(frames, pixref, origin=1): """Compute reference pixels between frames using WCS information. The sky world coordinates are computed on *pixref* using the WCS of the first frame in the sequence. Then, the pixel coordinates of the reference sky world-coordinates are compute...

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def get_all(self, api_method, collection_name, **kwargs): """ Return all objects in an api_method, handle pagination, and pass kwargs on to the method being called. For example, "users.list" returns an object like: { "members": [{<member_obj>}, {<member_obj_2>}], ...

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35.386364

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def items(self): """ :return: a list of name/value attribute pairs sorted by attribute name. """ sorted_keys = sorted(self.keys()) return [(k, self[k]) for k in sorted_keys]

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34.666667

12.333333

def send_request(self, request): '''Send a Request. Return a (message, event) pair. The message is an unframed message to send over the network. Wait on the event for the response; which will be in the "result" attribute. Raises: ProtocolError if the request violates the proto...

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39.692308

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def execute_ssh(cls, command, *args, **kwargs): """execute_ssh(command, arguments..., pty=False, echo=False) Execute `command` on a remote server. It first calls :meth:`Flow.connect_ssh` using all positional and keyword arguments, then calls :meth:`SSHClient.execute` with the command ...

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39.875

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def one_of(inners, arg): """At least one of the inner validators must pass""" for inner in inners: with suppress(com.IbisTypeError, ValueError): return inner(arg) rules_formatted = ', '.join(map(repr, inners)) raise com.IbisTypeError( 'Arg passes neither of the following rul...

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34.8

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def conllu2json(input_data, n_sents=10, use_morphology=False, lang=None): """ Convert conllu files into JSON format for use with train cli. use_morphology parameter enables appending morphology to tags, which is useful for languages such as Spanish, where UD tags are not so rich. Extract NER tags i...

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40

18.068966

def update_offer(self, offer_id, offer_dict): """ Updates an offer :param offer_id: the offer id :param offer_dict: dict :return: dict """ return self._create_put_request(resource=OFFERS, billomat_id=offer_id, send_data=offer_dict)

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31.111111

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def load(self): """ Return the model from the store """ if self.rid and not self.is_loaded: store = goldman.sess.store self._is_loaded = True self.model = store.find(self.rtype, self.field, self.rid) return self.model

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27.1

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def remove_child(self, rhs): """Remove a given child element, specified by name or as element.""" if type(rhs) is XMLElement: lib.lsl_remove_child(self.e, rhs.e) else: lib.lsl_remove_child_n(self.e, rhs)

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41

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def _random_mutation_operator(self, individual, allow_shrink=True): """Perform a replacement, insertion, or shrink mutation on an individual. Parameters ---------- individual: DEAP individual A list of pipeline operators and model parameters that can be compiled ...

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49.316667

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def is_cell_empty(self, cell): """Checks if the cell is empty.""" if cell is None: return True elif self._is_cell_empty: return self._is_cell_empty(cell) else: return cell is None

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25.75

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def create_filebase_name(self, group_info, extension='gz', file_name=None): """ Return tuple of resolved destination folder name and file name """ dirname = self.filebase.formatted_dirname(groups=group_info) if not file_name: file_name = self.filebase.prefix_template ...

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45.5

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def start_update(self, draw=None, queues=None, update_shared=True): """ Conduct the registered plot updates This method starts the updates from what has been registered by the :meth:`update` method. You can call this method if you did not set the `auto_update` parameter to True ...

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38.31

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def generate(self, blueprint, context, interactive=True): """Generate a blueprint within this application.""" if not isinstance(blueprint, Blueprint): bp = self.blueprints.get(blueprint) if not bp: raise ValueError('%s is not a valid blueprint' % blueprint) ...

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30.76

15.36

def create_storage_policy(policy_name, policy_dict, service_instance=None): ''' Creates a storage policy. Supported capability types: scalar, set, range. policy_name Name of the policy to create. The value of the argument will override any existing name in ``policy_dict``. ...

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37.805556

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def get_as_dataframe(worksheet, evaluate_formulas=False, **options): """ Returns the worksheet contents as a DataFrame. :param worksheet: the worksheet. :param evaluate_formulas: if True, get the value of a cell after formula evaluation; otherwise g...

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def get_tile(self, codepoint: int) -> np.array: """Return a copy of a tile for the given codepoint. If the tile does not exist yet then a blank array will be returned. The tile will have a shape of (height, width, rgba) and a dtype of uint8. Note that most grey-scale tiles will only u...

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def verify_any(df, check, *args, **kwargs): """ Verify that any of the entries in ``check(df, *args, **kwargs)`` is true """ result = check(df, *args, **kwargs) try: assert np.any(result) except AssertionError as e: msg = '{} not true for any'.format(check.__name__) e...

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def extract_flask_settings(self): """ Copies SCOUT_* settings in the app into Scout's config lookup """ configs = {} configs["application_root"] = self.app.instance_path for name in current_app.config: if name.startswith("SCOUT_"): value = curr...

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def super_kls(self): """ Determine what kls this group inherits from If default kls should be used, then None is returned """ if not self.kls and self.parent and self.parent.name: return self.parent.kls_name return self.kls

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def __init(self): """ initializes the service """ params = { "f" : "json", } json_dict = self._get(self._url, params, securityHandler=self._securityHandler, proxy_port=self._proxy_port, ...

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def resolve_resource_id_refs(self, input_dict, supported_resource_id_refs): """ Resolve resource references within a GetAtt dict. Example: { "Fn::GetAtt": ["LogicalId", "Arn"] } => {"Fn::GetAtt": ["ResolvedLogicalId", "Arn"]} Theoretically, only the first element of the...

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def _map_order_to_ticks(start, end, order, reverse=False): """Map elements from given `order` array to bins ranging from `start` to `end`. """ size = len(order) bounds = np.linspace(start, end, size + 1) if reverse: bounds = bounds[::-1] mapping = list...

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def validate_get_dbs(connection): """ validates the connection object is capable of read access to rethink should be at least one test database by default :param connection: <rethinkdb.net.DefaultConnection> :return: <set> list of databases :raises: ReqlDriverError AssertionError """ r...

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31.076923

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def authenticate_credentials(self, payload): """ Returns an active user that matches the payload's user id and email. """ User = get_user_model() username = jwt_get_username_from_payload(payload) if not username: msg = _('Invalid payload.') raise ...

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def spawn(self, parameters=None, arguments=None, stderr=None, timeout=None, short_option_prefix="-", long_option_prefix="--"): """ Spawn the process defined in `cmd` parameters is converted to options the short and long option prefixes if a list is given as the value, the parameter is r...

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40.066667

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def sim(self, src, tar, qval=2): r"""Return the cosine similarity of two strings. Parameters ---------- src : str Source string (or QGrams/Counter objects) for comparison tar : str Target string (or QGrams/Counter objects) for comparison qval : in...

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def bind(self, extension: Extension) -> 'DictMentor': """ Add any predefined or custom extension. Args: extension: Extension to add to the processor. Returns: The DictMentor itself for chaining. """ if not Extension.is_valid_extension(extension):...

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30.8

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def _add_section_default(self, section, parameters): ''' Add the given section with the given paramters to the config. The parameters must be a dictionary with all the keys to add. Each key must be specified as an other dictionary with the following parameters: default, descr...

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45.407407

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def accessible_organisms(user, orgs): """Get the list of organisms accessible to a user, filtered by `orgs`""" permission_map = { x['organism']: x['permissions'] for x in user.organismPermissions if 'WRITE' in x['permissions'] or 'READ' in x['permissions'] or 'ADMINISTRAT...

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def gettrace(self, burn=0, thin=1, chain=-1, slicing=None): """Return the trace (last by default). Input: - burn (int): The number of transient steps to skip. - thin (int): Keep one in thin. - chain (int): The index of the chain to fetch. If None, return all ch...

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40.516129

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def clean(): """ Remove all of the files contained in workdir.options.path """ if os.path.isdir(options.path): logger.info('cleaning working directory: ' + options.path) for filename in os.listdir(options.path): filepath = os.path.join(options.path, filename) if os.path.i...

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44.8

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def get_as_integer_with_default(self, index, default_value): """ Converts array element into an integer or returns default value if conversion is not possible. :param index: an index of element to get. :param default_value: the default value :return: integer value ot the eleme...

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39.833333

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def translate(self): """Compile the variable lookup.""" ident = self.ident expr = ex_rvalue(VARIABLE_PREFIX + ident) return [expr], set([ident]), set()

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35.8

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def main(): """Install or upgrade setuptools and EasyInstall.""" options = _parse_args() archive = download_setuptools(**_download_args(options)) return _install(archive, _build_install_args(options))

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def _ParseKey(self, knowledge_base, registry_key, value_name): """Parses a Windows Registry key for a preprocessing attribute. Args: knowledge_base (KnowledgeBase): to fill with preprocessing information. registry_key (dfwinreg.WinRegistryKey): Windows Registry key. value_name (str): name of ...

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def has_hints(self): """ True if self provides hints on the cutoff energy. """ for acc in ["low", "normal", "high"]: try: if self.hint_for_accuracy(acc) is None: return False except KeyError: return False ...

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29.272727

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def fromfilenames(filenames, coltype = int): """ Return a segmentlist describing the intervals spanned by the files whose names are given in the list filenames. The segmentlist is constructed by parsing the file names, and the boundaries of each segment are coerced to type coltype. The file names are parsed usi...

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39.56

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def reduceByKeyAndWindow(self, func, invFunc, windowDuration, slideDuration=None, numPartitions=None, filterFunc=None): """ Return a new DStream by applying incremental `reduceByKey` over a sliding window. The reduced value of over a new window is calculated using t...

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def IsValidLanguageCode(lang): """ Checks the validity of a language code value: - checks whether the code, as lower case, is well formed and valid BCP47 using the pybcp47 module """ bcp47_obj = parser.ParseLanguage(str(lang.lower())) return bcp47_obj.IsWellformed() and bcp47_obj.IsValid()

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37.875

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def update_build(self, build, project, build_id, retry=None): """UpdateBuild. Updates a build. :param :class:`<Build> <azure.devops.v5_0.build.models.Build>` build: The build. :param str project: Project ID or project name :param int build_id: The ID of the build. :param ...

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50.16

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def fletcher_checksum(data, offset): """ Fletcher Checksum -- Refer to RFC1008 calling with offset == _FLETCHER_CHECKSUM_VALIDATE will validate the checksum without modifying the buffer; a valid checksum returns 0. """ c0 = 0 c1 = 0 pos = 0 length = len(data) data = bytearray(da...

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22.575758

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def consultar_sat(retorno): """Constrói uma :class:`RespostaSAT` para o retorno (unicode) da função :meth:`~satcfe.base.FuncoesSAT.consultar_sat`. """ resposta = analisar_retorno(forcar_unicode(retorno), funcao='ConsultarSAT') if resposta.EEEEE not in ('08000',): ...

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42.444444

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def _handleBulletWidth(bulletText, style, maxWidths): """ work out bullet width and adjust maxWidths[0] if neccessary """ if bulletText: if isinstance(bulletText, basestring): bulletWidth = stringWidth(bulletText, style.bulletFontName, style.bulletFontSize) else: ...

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45.882353

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def add_controller(self, key, controller): """Add child controller The passed controller is registered as child of self. The register_actions method of the child controller is called, allowing the child controller to register shortcut callbacks. :param key: Name of the controller (uniq...

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54.6

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def _scalar_power(self, f, p, out): """Compute ``p``-th power of ``f`` for ``p`` scalar.""" # Avoid infinite recursions by making a copy of the function f_copy = f.copy() def pow_posint(x, n): """Power function for positive integer ``n``, out-of-place.""" if isin...

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35.581395

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def numberize(string): '''Turns a string into a number (``int`` or ``float``) if it's only a number (ignoring spaces), otherwise returns the string. For example, ``"5 "`` becomes ``5`` and ``"2 ton"`` remains ``"2 ton"``''' if not isinstance(string,basestring): return string just_int = r'^\s*[-+...

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42.333333

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def get_rgb_from_xy_and_brightness(self, x, y, bri=1): """Inverse of `get_xy_point_from_rgb`. Returns (r, g, b) for given x, y values. Implementation of the instructions found on the Philips Hue iOS SDK docs: http://goo.gl/kWKXKl """ # The xy to color conversion is almost the same, but i...

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45.069767

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def notebook_to_md(notebook): """Convert a notebook to its Markdown representation, using Pandoc""" tmp_file = tempfile.NamedTemporaryFile(delete=False) tmp_file.write(ipynb_writes(notebook).encode('utf-8')) tmp_file.close() pandoc(u'--from ipynb --to markdown -s --atx-headers --wrap=preserve --pre...

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39.846154

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def ts_to_dt_str(ts, dt_format='%Y-%m-%d %H:%M:%S'): """ 时间戳转换为日期字符串 Args: ts: 待转换的时间戳 dt_format: 目标日期字符串格式 Returns: 日期字符串 """ return datetime.datetime.fromtimestamp(int(ts)).strftime(dt_format)

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20.545455

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def classify_intersection9(s, curve1, curve2): """Image for :func:`._surface_helpers.classify_intersection` docstring.""" if NO_IMAGES: return surface1 = bezier.Surface.from_nodes( np.asfortranarray( [ [0.0, 20.0, 40.0, 10.0, 30.0, 20.0], [0.0, 40...

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37.627907

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def augment(self, dct: NonAugmentedDict, document: Optional[YamlDocument] = None) -> AugmentedDict: """ Augments the given dictionary by using all the bound extensions. Args: dct: Dictionary to augment. document: The document the dictionary was loaded fro...

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33.40625

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def has_annotation(self, annotation: str) -> bool: """Check if this annotation is defined.""" return ( self.has_enumerated_annotation(annotation) or self.has_regex_annotation(annotation) or self.has_local_annotation(annotation) )

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40.428571

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def has_all_changes_covered(self): """ Return `True` if all changes have been covered, `False` otherwise. """ for filename in self.files(): for hunk in self.file_source_hunks(filename): for line in hunk: if line.reason is None: ...

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39.083333

10.083333

def strip_querystring(url): """Remove the querystring from the end of a URL.""" p = six.moves.urllib.parse.urlparse(url) return p.scheme + "://" + p.netloc + p.path

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43.25

6

def R(self, value): """ measurement uncertainty""" self._R = value self._R1_2 = cholesky(self._R, lower=True)

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32.5

12

def matches_video_filename(self, video): """ Detect whether the filename of videofile matches with this SubtitleFile. :param video: VideoFile instance :return: True if match """ vid_fn = video.get_filename() vid_base, _ = os.path.splitext(vid_fn) vid_base...

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33.871795

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def slice_reStructuredText(input, output): """ Slices given reStructuredText file. :param input: ReStructuredText file to slice. :type input: unicode :param output: Directory to output sliced reStructuredText files. :type output: unicode :return: Definition success. :rtype: bool """...

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40.206897

26.103448

async def verify_chain_of_trust(chain): """Build and verify the chain of trust. Args: chain (ChainOfTrust): the chain we're operating on Raises: CoTError: on failure """ log_path = os.path.join(chain.context.config["task_log_dir"], "chain_of_trust.log") scriptworker_log = logg...

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39.804878

18.04878

def count(self): """ Compute count of group, excluding missing values """ from pandas.core.dtypes.missing import _isna_ndarraylike as _isna data, _ = self._get_data_to_aggregate() ids, _, ngroups = self.grouper.group_info mask = ids != -1 val = ((mask & ~_isna(np.atleas...

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def iter_regions(self): """ Return an iterable list of all region files. Use this function if you only want to loop through each region files once, and do not want to cache the results. """ # TODO: Implement BoundingBox # TODO: Implement sort order for x,z in self...

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40.454545

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def base_url(klass, space_id, parent_resource_id, resource_url='entries', resource_id=None, environment_id=None): """ Returns the URI for the snapshot. """ return "spaces/{0}{1}/{2}/{3}/snapshots/{4}".format( space_id, '/environments/{0}'.format(environment_id) i...

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39.416667

23.25

def impersonate_user(self, username, password): """delegate to personate_user method """ if self.personate_user: self.personate_user.impersonate_user(username, password)

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40.2

8.8

def get_target_transcript(self,min_intron=1): """Get the mapping of to the target strand :returns: Transcript mapped to target :rtype: Transcript """ if min_intron < 1: sys.stderr.write("ERROR minimum intron should be 1 base or longer\n") sys.exit() #tx = Transcript() rngs = [...

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37.125

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def exit(self, signal=None, frame=None): """ Properly close the AMQP connections """ self.input_channel.close() self.client_queue.close() self.connection.close() log.info("Worker exiting") sys.exit(0)

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28.444444

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def _CalculateDOWDelta(self, wd, wkdy, offset, style, currentDayStyle): """ Based on the C{style} and C{currentDayStyle} determine what day-of-week value is to be returned. @type wd: integer @param wd: day-of-week value for the current day @typ...

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37.307692

15.769231

def delete_fixed_rate_shipping_by_id(cls, fixed_rate_shipping_id, **kwargs): """Delete FixedRateShipping Delete an instance of FixedRateShipping by its ID. This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async=True >>> t...

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47.52381

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def add_data_point(self, x, y): """Adds a data point to the series. :param x: The numerical x value to be added. :param y: The numerical y value to be added.""" if not is_numeric(x): raise TypeError("x value must be numeric, not '%s'" % str(x)) if not is_numeric(y):...

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39.5

16.5

def _sendmsg(self,method,url,headers): '''发送消息''' msg = '%s %s %s'%(method,url,RTSP_VERSION) headers['User-Agent'] = DEFAULT_USERAGENT cseq = self._next_seq() self._cseq_map[cseq] = method headers['CSeq'] = str(cseq) if self._session_id: headers['Session'] = self....

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41.647059

12.117647

def pprint(walker): """Pretty printer for tree walkers Takes a TreeWalker instance and pretty prints the output of walking the tree. :arg walker: a TreeWalker instance """ output = [] indent = 0 for token in concatenateCharacterTokens(walker): type = token["type"] if type ...

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37.92

19.186667

def set_description(self, id, **kwargs): # noqa: E501 """Set description associated with a specific source # noqa: E501 # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> thread = api.set...

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40.636364

18.045455

def calculate_euc_distance(a, b): """Calculates Eclidian distances from two points a and b Args ---- a : (:obj:`float`, :obj:`float`) Two-dimension tuple (x1,y1) b : (:obj:`float`, :obj:`float`) Two-dimension tuple (x2,y2) Returns ------- float the distance....

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21.736842

20.842105

def pg_dsn(settings: Settings) -> str: """ :param settings: settings including connection settings :return: DSN url suitable for sqlalchemy and aiopg. """ return str(URL( database=settings.DB_NAME, password=settings.DB_PASSWORD, host=settings.DB_HOST, port=settings.DB...

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29.769231

10.384615

def register(self, name): """Return decorator to register item with a specific name.""" def decorator(func): """Register decorated function.""" self[name] = func return func return decorator

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30.5

13.875

def deserialize(encoded, **kwargs): '''Construct a muda transformation from a JSON encoded string. Parameters ---------- encoded : str JSON encoding of the transformation or pipeline kwargs Additional keyword arguments to `jsonpickle.decode()` Returns ------- obj ...

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19.8125

25.125

def be_array_from_bytes(fmt, data): """ Reads an array from bytestring with big-endian data. """ arr = array.array(str(fmt), data) return fix_byteorder(arr)

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28.5

5.833333

def initialize_repo(self): """ Clones repository & sets up usernames. """ logging.info('Repo {} doesn\'t exist. Cloning...'.format(self.repo_dir)) clone_args = ['git', 'clone'] if self.depth and self.depth > 0: clone_args.extend(['--depth', str(self.depth)]) ...

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49.066667

20.533333

def api_key_from_file(url): """ Check bugzillarc for an API key for this Bugzilla URL. """ path = os.path.expanduser('~/.config/python-bugzilla/bugzillarc') cfg = SafeConfigParser() cfg.read(path) domain = urlparse(url)[1] if domain not in cfg.sections(): return None if not cfg.has_o...

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35.727273

12.818182

def add_shapes(self,**kwargs): """ Add a shape to the QuantFigure. kwargs : hline : int, list or dict Draws a horizontal line at the indicated y position(s) Extra parameters can be passed in the form of a dictionary (see shapes) vline : int, list or dict Draws a vertical line at the ...

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29.853659

10.731707

def rename(self, **kwargs): '''Rename series in the group.''' for old, new in kwargs.iteritems(): if old in self.groups: self.groups[new] = self.groups[old] del self.groups[old]

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38.666667

6.333333

def N50(arr): """N50 often used in assessing denovo assembly. :param arr: list of numbers :type arr: number[] a number array :return: N50 :rtype: float """ if len(arr) == 0: sys.stderr.write("ERROR: no content in array to take N50\n") sys.exit() tot = sum(arr) half = float(tot)/float(2) cu...

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22.47619

19.52381

def member_add(self, stream_id, user_id): ''' add a user to a stream ''' req_hook = 'pod/v1/room/' + str(stream_id) + '/membership/add' req_args = '{ "id": %s }' % user_id status_code, response = self.__rest__.POST_query(req_hook, req_args) self.logger.debug('%s: %s' % (status_co...

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52.142857

13.857143

def Lines(startPoints, endPoints=None, scale=1, lw=1, c=None, alpha=1, dotted=False): """ Build the line segments between two lists of points `startPoints` and `endPoints`. `startPoints` can be also passed in the form ``[[point1, point2], ...]``. :param float scale: apply a rescaling factor to the leng...

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31.216216

21

def get_assessment_ids(self): """Gets the Ids of any assessments associated with this activity. return: (osid.id.IdList) - list of assessment Ids raise: IllegalState - is_assessment_based_activity() is false compliance: mandatory - This method must be implemented. """ ...

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38.75

19.416667

def get_readable_string(integer): r""" Convert an integer to a readable 2-character representation. This is useful for reversing examples: 41 == ".A", 13 == "\n", 20 (space) == "__" Returns a readable 2-char representation of an int. """ if integer == 9: #\t readable_strin...

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35.75

15.7