kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def _info_long(self) -> Optional[str]: """Extract journey information.""" try: return str( html.unescape(self.journey.InfoTextList.InfoText.get("textL")).replace( "<br />", "\n" ) ) except AttributeError: ret...	[ "def", "_info_long", "(", "self", ")", "->", "Optional", "[", "str", "]", ":", "try", ":", "return", "str", "(", "html", ".", "unescape", "(", "self", ".", "journey", ".", "InfoTextList", ".", "InfoText", ".", "get", "(", "\"textL\"", ")", ")", ".", ...	31.9	17.7
def _aha_request(self, cmd, ain=None, param=None, rf=str): """Send an AHA request.""" url = 'http://' + self._host + '/webservices/homeautoswitch.lua' params = { 'switchcmd': cmd, 'sid': self._sid } if param: params['param'] = param if ...	[ "def", "_aha_request", "(", "self", ",", "cmd", ",", "ain", "=", "None", ",", "param", "=", "None", ",", "rf", "=", "str", ")", ":", "url", "=", "'http://'", "+", "self", ".", "_host", "+", "'/webservices/homeautoswitch.lua'", "params", "=", "{", "'swi...	27.736842	17.421053
def get_interface_switchport_output_switchport_interface_name(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") get_interface_switchport = ET.Element("get_interface_switchport") config = get_interface_switchport output = ET.SubElement(get_interface...	[ "def", "get_interface_switchport_output_switchport_interface_name", "(", "self", ",", "", "", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "get_interface_switchport", "=", "ET", ".", "Element", "(", "\"get_interface_switchport\"",...	49.333333	18.866667
def send_activation_email(user, site): """ Send an activation email to the ``user``. The activation email will make use of two templates: ``registration/activation_email_subject.txt`` This template will be used for the subject line of the email. Because it is used as the subject line of an emai...	[ "def", "send_activation_email", "(", "user", ",", "site", ")", ":", "ctx_dict", "=", "{", "'activation_key'", ":", "user", ".", "api_registration_profile", ".", "activation_key", ",", "'expiration_days'", ":", "get_settings", "(", "'REGISTRATION_API_ACCOUNT_ACTIVATION_D...	39.695652	19.608696
def ess(sim, n): """Calculate effective sample size Parameters ---------- sim : chains n : int Parameter index starting from 0 """ try: ess = _chains.effective_sample_size(sim, n) except (ValueError, ZeroDivisionError): ess = nan return ess	[ "def", "ess", "(", "sim", ",", "n", ")", ":", "try", ":", "ess", "=", "_chains", ".", "effective_sample_size", "(", "sim", ",", "n", ")", "except", "(", "ValueError", ",", "ZeroDivisionError", ")", ":", "ess", "=", "nan", "return", "ess" ]	20.571429	18.928571
def login(self, login, password, set_auth=False): """ Attempts a login to the remote server and on success returns user id and session or None Warning: Do not depend on this. This will be deprecated with SSO. param set_auth: sets the authentication on the client...	[ "def", "login", "(", "self", ",", "login", ",", "password", ",", "set_auth", "=", "False", ")", ":", "rv", "=", "self", ".", "session", ".", "post", "(", "self", ".", "host", ",", "dumps", "(", "{", "\"method\"", ":", "\"common.db.login\"", ",", "\"p...	27.5	16.333333
def setDisallowed(self, laneID, disallowedClasses): """setDisallowed(string, list) -> None Sets a list of disallowed vehicle classes. """ if isinstance(disallowedClasses, str): disallowedClasses = [disallowedClasses] self._connection._beginMessage(tc.CMD_SET_LANE_VAR...	[ "def", "setDisallowed", "(", "self", ",", "laneID", ",", "disallowedClasses", ")", ":", "if", "isinstance", "(", "disallowedClasses", ",", "str", ")", ":", "disallowedClasses", "=", "[", "disallowedClasses", "]", "self", ".", "_connection", ".", "_beginMessage",...	50.181818	20.090909
def get_data(source, fields='*', env=None, first_row=0, count=-1, schema=None): """ A utility function to get a subset of data from a Table, Query, Pandas dataframe or List. Args: source: the source of the data. Can be a Table, Pandas DataFrame, List of dictionaries or lists, or a string, in which case...	[ "def", "get_data", "(", "source", ",", "fields", "=", "'*'", ",", "env", "=", "None", ",", "first_row", "=", "0", ",", "count", "=", "-", "1", ",", "schema", "=", "None", ")", ":", "ipy", "=", "IPython", ".", "get_ipython", "(", ")", "if", "env",...	49.982456	28.754386
def deleteThreads(self, thread_ids): """ Deletes threads :param thread_ids: Thread IDs to delete. See :ref:`intro_threads` :return: Whether the request was successful :raises: FBchatException if request failed """ thread_ids = require_list(thread_ids) da...	[ "def", "deleteThreads", "(", "self", ",", "thread_ids", ")", ":", "thread_ids", "=", "require_list", "(", "thread_ids", ")", "data_unpin", "=", "dict", "(", ")", "data_delete", "=", "dict", "(", ")", "for", "i", ",", "thread_id", "in", "enumerate", "(", ...	38.944444	16.166667
def comment_create(self, post_id, comment_body, anonymous=None): """Action to lets you create a comment (Requires login). Parameters: post_id (int): The post id number to which you are responding. comment_body (str): The body of the comment. anonymous (int): Set to 1...	[ "def", "comment_create", "(", "self", ",", "post_id", ",", "comment_body", ",", "anonymous", "=", "None", ")", ":", "params", "=", "{", "'comment[post_id]'", ":", "post_id", ",", "'comment[body]'", ":", "comment_body", ",", "'comment[anonymous]'", ":", "anonymou...	41.333333	16.333333
def roundup(self, minimum_distance): """ If the minimum_distance is nonzero, returns a copy of the DistancesContext with updated distances, i.e. the ones below minimum_distance are rounded up to the minimum_distance. Otherwise, returns the original DistancesContext unchanged. ...	[ "def", "roundup", "(", "self", ",", "minimum_distance", ")", ":", "if", "not", "minimum_distance", ":", "return", "self", "ctx", "=", "DistancesContext", "(", ")", "for", "dist", ",", "array", "in", "vars", "(", "self", ")", ".", "items", "(", ")", ":"...	41.823529	12.882353
def assert_raises_regex(exception, regex, msg_fmt="{msg}"): """Fail unless an exception with a message that matches a regular expression is raised within the context. The regular expression can be a regular expression string or object. >>> with assert_raises_regex(ValueError, r"\\d+"): ... ra...	[ "def", "assert_raises_regex", "(", "exception", ",", "regex", ",", "msg_fmt", "=", "\"{msg}\"", ")", ":", "def", "test", "(", "exc", ")", ":", "compiled", "=", "re", ".", "compile", "(", "regex", ")", "if", "not", "exc", ".", "args", ":", "msg", "=",...	33.415094	16.698113
def _point_scalar(self, name=None): """ Returns point scalars of a vtk object Parameters ---------- name : str Name of point scalars to retrive. Returns ------- scalars : np.ndarray Numpy array of scalars """ if n...	[ "def", "_point_scalar", "(", "self", ",", "name", "=", "None", ")", ":", "if", "name", "is", "None", ":", "# use active scalar array", "field", ",", "name", "=", "self", ".", "active_scalar_info", "if", "field", "!=", "POINT_DATA_FIELD", ":", "raise", "Runti...	32.323529	17.382353
def set_properties(self, path, mode): """Set file's properties (name and mode). This function is also in charge of swapping between textual and binary streams. """ self.name = path self.mode = mode if 'b' in self.mode: if not isinstance(self.read_dat...	[ "def", "set_properties", "(", "self", ",", "path", ",", "mode", ")", ":", "self", ".", "name", "=", "path", "self", ".", "mode", "=", "mode", "if", "'b'", "in", "self", ".", "mode", ":", "if", "not", "isinstance", "(", "self", ".", "read_data", ","...	34.933333	19.066667
def get_base_branch(): # type: () -> str """ Return the base branch for the current branch. This function will first try to guess the base branch and if it can't it will let the user choose the branch from the list of all local branches. Returns: str: The name of the branch the current bra...	[ "def", "get_base_branch", "(", ")", ":", "# type: () -> str", "base_branch", "=", "git", ".", "guess_base_branch", "(", ")", "if", "base_branch", "is", "None", ":", "log", ".", "info", "(", "\"Can't guess the base branch, you have to pick one yourself:\"", ")", "base_...	31.823529	23.411765
def all_finite(self,X): """returns true if X is finite, false, otherwise""" # Adapted from sklearn utils: _assert_all_finite(X) # First try an O(n) time, O(1) space solution for the common case that # everything is finite; fall back to O(n) space np.isfinite to prevent # false po...	[ "def", "all_finite", "(", "self", ",", "X", ")", ":", "# Adapted from sklearn utils: _assert_all_finite(X)", "# First try an O(n) time, O(1) space solution for the common case that", "# everything is finite; fall back to O(n) space np.isfinite to prevent", "# false positives from overflow in s...	56.692308	23.538462
def package(self): """ Find a package name from a build task's parameters. :returns: name of the package this build task is building. :raises: ValueError if we could not parse this tasks's request params. """ if self.method == 'buildNotification': return self...	[ "def", "package", "(", "self", ")", ":", "if", "self", ".", "method", "==", "'buildNotification'", ":", "return", "self", ".", "params", "[", "1", "]", "[", "'name'", "]", "if", "self", ".", "method", "in", "(", "'createImage'", ",", "'image'", ",", ...	43.305556	14.472222
def enrich(self, columns): """ This method appends at the end of the dataframe as many rows as items are found in the list of elemnents in the provided columns. This assumes that the length of the lists for the several specified columns is the same. As an example, for the row A ...	[ "def", "enrich", "(", "self", ",", "columns", ")", ":", "for", "column", "in", "columns", ":", "if", "column", "not", "in", "self", ".", "data", ".", "columns", ":", "return", "self", ".", "data", "# Looking for the rows with columns with lists of more", "# th...	37.555556	17.259259
def lint(session): """Run flake8. Returns a failure if flake8 finds linting errors or sufficiently serious code quality issues. """ session.interpreter = 'python3.6' session.install('flake8') # Install dev packages. _install_dev_packages(session) session.run( 'flake8', ...	[ "def", "lint", "(", "session", ")", ":", "session", ".", "interpreter", "=", "'python3.6'", "session", ".", "install", "(", "'flake8'", ")", "# Install dev packages.", "_install_dev_packages", "(", "session", ")", "session", ".", "run", "(", "'flake8'", ",", "...	31.066667	20.066667
def new_transient(self, ext=''): '''Creates empty TransientFile with random name and given extension. File on FS is not created''' name = random_name(self.transient_length) + ext return TransientFile(self.transient_root, name, self)	[ "def", "new_transient", "(", "self", ",", "ext", "=", "''", ")", ":", "name", "=", "random_name", "(", "self", ".", "transient_length", ")", "+", "ext", "return", "TransientFile", "(", "self", ".", "transient_root", ",", "name", ",", "self", ")" ]	52	16.8
def copytree(src, dst, symlinks=False, ignore=None): """Recursively copy a directory tree using copy2(). The destination directory must not already exist. If exception(s) occur, an Error is raised with a list of reasons. If the optional symlinks flag is true, symbolic links in the source tree resu...	[ "def", "copytree", "(", "src", ",", "dst", ",", "symlinks", "=", "False", ",", "ignore", "=", "None", ")", ":", "from", "shutil", "import", "copy2", ",", "Error", ",", "copystat", "names", "=", "os", ".", "listdir", "(", "src", ")", "if", "ignore", ...	35.784615	18.892308
def cmd_quick(action, action_space, ability_id, queued): """Do a quick command like 'Stop' or 'Stim'.""" action_cmd = spatial(action, action_space).unit_command action_cmd.ability_id = ability_id action_cmd.queue_command = queued	[ "def", "cmd_quick", "(", "action", ",", "action_space", ",", "ability_id", ",", "queued", ")", ":", "action_cmd", "=", "spatial", "(", "action", ",", "action_space", ")", ".", "unit_command", "action_cmd", ".", "ability_id", "=", "ability_id", "action_cmd", "....	46.6	8.4
def _get_variable_name_or_register(var, variables, names, params, prefix): ''' Args: var (~nnabla.Variable) variables (OrderedDict) names (dict): Force name table, Variable -> str params (dict): NdArray -> str prefix(str) ''' if var not in variables.values(): ...	[ "def", "_get_variable_name_or_register", "(", "var", ",", "variables", ",", "names", ",", "params", ",", "prefix", ")", ":", "if", "var", "not", "in", "variables", ".", "values", "(", ")", ":", "vname", "=", "prefix", "if", "var", ".", "data", "in", "p...	30.428571	19.380952
def encode_fetch_request(cls, client_id, correlation_id, payloads=None, max_wait_time=100, min_bytes=4096): """ Encodes some FetchRequest structs Arguments: client_id: string correlation_id: int payloads: list of FetchRequest ...	[ "def", "encode_fetch_request", "(", "cls", ",", "client_id", ",", "correlation_id", ",", "payloads", "=", "None", ",", "max_wait_time", "=", "100", ",", "min_bytes", "=", "4096", ")", ":", "payloads", "=", "[", "]", "if", "payloads", "is", "None", "else", ...	42.411765	23
def sensoryCompute(self, activeMinicolumns, learn): """ @param activeMinicolumns (numpy array) List of indices of minicolumns to activate. @param learn (bool) If True, the two layers should learn this association. @return (tuple of dicts) Data for logging/tracing. """ inputParams =...	[ "def", "sensoryCompute", "(", "self", ",", "activeMinicolumns", ",", "learn", ")", ":", "inputParams", "=", "{", "\"activeColumns\"", ":", "activeMinicolumns", ",", "\"basalInput\"", ":", "self", ".", "getLocationRepresentation", "(", ")", ",", "\"basalGrowthCandida...	28.821429	16.892857
def trim_tree(tree): """ Remove the dead branches of tree, that is, the resulting tree accepts the same language as the original one (that is, the same words that end with the < character), but parts of the tree that lead to nothing are removed. :param tree: the tree; ...	[ "def", "trim_tree", "(", "tree", ")", ":", "# Remove empty nodes", "new_tree", "=", "{", "k", ":", "v", "for", "k", ",", "v", "in", "tree", ".", "items", "(", ")", "if", "v", "}", "# Remove missing successors", "new_tree", "=", "{", "k", ":", "{", "s...	43.5	17.961538
def add_function(self, function_id=None, function=None, inputs=None, outputs=None, input_domain=None, weight=None, inp_weight=None, out_weight=None, description=None, filters=None, await_domain=None, await_result=None, **kwargs): ...	[ "def", "add_function", "(", "self", ",", "function_id", "=", "None", ",", "function", "=", "None", ",", "inputs", "=", "None", ",", "outputs", "=", "None", ",", "input_domain", "=", "None", ",", "weight", "=", "None", ",", "inp_weight", "=", "None", ",...	42.582278	22.962025
def HWProcess(cls, proc: HWProcess, ctx: ResourceContext) -> None: """ Gues resource usage by HWProcess """ seen = ctx.seen for stm in proc.statements: encl = stm._enclosed_for full_ev_dep = stm._is_completly_event_dependent now_ev_dep = stm._n...	[ "def", "HWProcess", "(", "cls", ",", "proc", ":", "HWProcess", ",", "ctx", ":", "ResourceContext", ")", "->", "None", ":", "seen", "=", "ctx", ".", "seen", "for", "stm", "in", "proc", ".", "statements", ":", "encl", "=", "stm", ".", "_enclosed_for", ...	37.882353	15.529412
def set_ctype(self, ctype, orig_ctype=None): """ Set the selected content type. Will not override the value of the content type if that has already been determined. :param ctype: The content type string to set. :param orig_ctype: The original content type, as found in the ...	[ "def", "set_ctype", "(", "self", ",", "ctype", ",", "orig_ctype", "=", "None", ")", ":", "if", "self", ".", "ctype", "is", "None", ":", "self", ".", "ctype", "=", "ctype", "self", ".", "orig_ctype", "=", "orig_ctype" ]	32.857143	17
def start(self): """Public method for initiating connectivity with the emby server.""" asyncio.ensure_future(self.register(), loop=self._event_loop) if self._own_loop: _LOGGER.info("Starting up our own event loop.") self._event_loop.run_forever() self._event_...	[ "def", "start", "(", "self", ")", ":", "asyncio", ".", "ensure_future", "(", "self", ".", "register", "(", ")", ",", "loop", "=", "self", ".", "_event_loop", ")", "if", "self", ".", "_own_loop", ":", "_LOGGER", ".", "info", "(", "\"Starting up our own ev...	41.555556	15.666667
def appendText(self, text): ''' appendText - append some inner text ''' # self.text is just raw string of the text self.text += text self.isSelfClosing = False # inner text means it can't self close anymo # self.blocks is either text or tags, in order of appea...	[ "def", "appendText", "(", "self", ",", "text", ")", ":", "# self.text is just raw string of the text", "self", ".", "text", "+=", "text", "self", ".", "isSelfClosing", "=", "False", "# inner text means it can't self close anymo", "# self.blocks is either text or tags, in orde...	38.888889	19.777778
def calculate_hash(options): """returns an option_collection_hash given a list of options""" options = sorted(list(options)) sha_hash = sha1() # equivalent to loop over the options and call sha_hash.update() sha_hash.update(''.join(options).encode('utf-8')) return sha_has...	[ "def", "calculate_hash", "(", "options", ")", ":", "options", "=", "sorted", "(", "list", "(", "options", ")", ")", "sha_hash", "=", "sha1", "(", ")", "# equivalent to loop over the options and call sha_hash.update()", "sha_hash", ".", "update", "(", "''", ".", ...	46.714286	11.714286
def oops(self): '''Out Of Phase Stereo effect. Mixes stereo to twin-mono where each mono channel contains the difference between the left and right stereo channels. This is sometimes known as the 'karaoke' effect as it often has the effect of removing most or all of the vocals from a rec...	[ "def", "oops", "(", "self", ")", ":", "effect_args", "=", "[", "'oops'", "]", "self", ".", "effects", ".", "extend", "(", "effect_args", ")", "self", ".", "effects_log", ".", "append", "(", "'oops'", ")", "return", "self" ]	38.5	26.166667
def add_event(self, source, reference, event_title, event_type, method='', description='', bucket_list=[], campaign='', confidence='', date=...	[ "def", "add_event", "(", "self", ",", "source", ",", "reference", ",", "event_title", ",", "event_type", ",", "method", "=", "''", ",", "description", "=", "''", ",", "bucket_list", "=", "[", "]", ",", "campaign", "=", "''", ",", "confidence", "=", "''...	38.402985	14.343284
def optimal_variational_posterior( kernel, inducing_index_points, observation_index_points, observations, observation_noise_variance, mean_fn=None, jitter=1e-6, name=None): """Model selection for optimal variational hyperparameters. Given the full training set (p...	[ "def", "optimal_variational_posterior", "(", "kernel", ",", "inducing_index_points", ",", "observation_index_points", ",", "observations", ",", "observation_noise_variance", ",", "mean_fn", "=", "None", ",", "jitter", "=", "1e-6", ",", "name", "=", "None", ")", ":",...	45.133333	23.25
def engine(log_file, no_distribute, yes, config_file, make_html_report, upgrade_db, db_version, what_if_I_upgrade, run, list_hazard_calculations, list_risk_calculations, delete_calculation, delete_uncompleted_calculations, hazard_calculation_id, list_outputs, show_log, ...	[ "def", "engine", "(", "log_file", ",", "no_distribute", ",", "yes", ",", "config_file", ",", "make_html_report", ",", "upgrade_db", ",", "db_version", ",", "what_if_I_upgrade", ",", "run", ",", "list_hazard_calculations", ",", "list_risk_calculations", ",", "delete_...	35.757813	18.351563
def normalize_pts(pts, ymax, scaler=2): """ scales all coordinates and flip y axis due to different origin coordinates (top left vs. bottom left) """ return [(x * scaler, ymax - (y * scaler)) for x, y in pts]	[ "def", "normalize_pts", "(", "pts", ",", "ymax", ",", "scaler", "=", "2", ")", ":", "return", "[", "(", "x", "", "scaler", ",", "ymax", "-", "(", "y", "", "scaler", ")", ")", "for", "x", ",", "y", "in", "pts", "]" ]	37.166667	8.5
def _initVirtualOutputs(self): """ Sets up the structure to hold all the output data arrays for this image in memory. """ self.virtualOutputs = {} for product in self.outputNames: self.virtualOutputs[product] = None	[ "def", "_initVirtualOutputs", "(", "self", ")", ":", "self", ".", "virtualOutputs", "=", "{", "}", "for", "product", "in", "self", ".", "outputNames", ":", "self", ".", "virtualOutputs", "[", "product", "]", "=", "None" ]	37.285714	5.142857
async def get_json( self, force: bool=False, silent: bool=False, cache: bool=True, ) -> Any: """Parses the body data as JSON and returns it. Arguments: force: Force JSON parsing even if the mimetype is not JSON. silent: Do not trigger error handling if parsing fails,...	[ "async", "def", "get_json", "(", "self", ",", "force", ":", "bool", "=", "False", ",", "silent", ":", "bool", "=", "False", ",", "cache", ":", "bool", "=", "True", ",", ")", "->", "Any", ":", "if", "cache", "and", "self", ".", "_cached_json", "is",...	33.103448	18.896552
def define_charset(self, code, mode): """Define ``G0`` or ``G1`` charset. :param str code: character set code, should be a character from ``"B0UK"``, otherwise ignored. :param str mode: if ``"("`` ``G0`` charset is defined, if ``")"`` -- we oper...	[ "def", "define_charset", "(", "self", ",", "code", ",", "mode", ")", ":", "if", "code", "in", "cs", ".", "MAPS", ":", "if", "mode", "==", "\"(\"", ":", "self", ".", "g0_charset", "=", "cs", ".", "MAPS", "[", "code", "]", "elif", "mode", "==", "\"...	39.133333	16.866667
def similarity_graph(self, k=5, radius=None, include_self_edges=False, output_type='SGraph', verbose=True): """ Construct the similarity graph on the reference dataset, which is already stored in the model. This is conceptually very similar to running `query` wit...	[ "def", "similarity_graph", "(", "self", ",", "k", "=", "5", ",", "radius", "=", "None", ",", "include_self_edges", "=", "False", ",", "output_type", "=", "'SGraph'", ",", "verbose", "=", "True", ")", ":", "## Validate inputs.", "if", "k", "is", "not", "N...	40.919355	25.854839
def generate_binding_credentials(self, binding): """Generate binding credentials This function will permit to define the configuration to connect to the instance. Those credentials will be stored on a secret and exposed to a a Pod. We should at least returns the...	[ "def", "generate_binding_credentials", "(", "self", ",", "binding", ")", ":", "uri", "=", "self", ".", "clusters", ".", "get", "(", "binding", ".", "instance", ".", "get_cluster", "(", ")", ",", "None", ")", "if", "not", "uri", ":", "raise", "ErrClusterC...	31.868421	21.921053
def hasKey(self, key, notNone=False): '''Return entries where the key is present. Example of use: >>> test = [ ... {"name": "Jim", "age": 18, "income": 93000, "wigs": 68 }, ... {"name": "Larry", "age": 18, "wigs": [3, 2, 9]}, ... {"name...	[ "def", "hasKey", "(", "self", ",", "key", ",", "notNone", "=", "False", ")", ":", "result", "=", "[", "]", "result_tracker", "=", "[", "]", "for", "counter", ",", "row", "in", "enumerate", "(", "self", ".", "table", ")", ":", "(", "target", ",", ...	39.090909	24.409091
def getFrameDimensions(data, page_width, page_height): """Calculate dimensions of a frame Returns left, top, width and height of the frame in points. """ box = data.get("-pdf-frame-box", []) if len(box) == 4: return [getSize(x) for x in box] top = getSize(data.get("top", 0)) left = ...	[ "def", "getFrameDimensions", "(", "data", ",", "page_width", ",", "page_height", ")", ":", "box", "=", "data", ".", "get", "(", "\"-pdf-frame-box\"", ",", "[", "]", ")", "if", "len", "(", "box", ")", "==", "4", ":", "return", "[", "getSize", "(", "x"...	36.694444	8.555556
def find_protoc(path=os.environ['PATH']): ''' Traverse a path ($PATH by default) to find the protoc compiler ''' protoc_filename = 'protoc' bin_search_paths = path.split(':') or [] for search_path in bin_search_paths: bin_path = os.path.join(search_path, protoc_filename) ...	[ "def", "find_protoc", "(", "path", "=", "os", ".", "environ", "[", "'PATH'", "]", ")", ":", "protoc_filename", "=", "'protoc'", "bin_search_paths", "=", "path", ".", "split", "(", "':'", ")", "or", "[", "]", "for", "search_path", "in", "bin_search_paths", ...	35.307692	20.384615
def downstream(self, node): """ Returns a list of all nodes this node has edges towards. Args: node (str): The node whose downstream nodes you want to find. Returns: list: A list of nodes that are immediately downstream from the node. """ ...	[ "def", "downstream", "(", "self", ",", "node", ")", ":", "graph", "=", "self", ".", "graph", "if", "node", "not", "in", "graph", ":", "raise", "KeyError", "(", "'node %s is not in graph'", "%", "node", ")", "return", "list", "(", "graph", "[", "node", ...	32.285714	20.071429
def load(self): "Loads the state from the state file" try: if os.path.getsize(self.state_file) <= 1: raise IOError("File is empty.") with open(self.state_file) as fh: state = json.load(fh) assert isinstance(state, dict) ...	[ "def", "load", "(", "self", ")", ":", "try", ":", "if", "os", ".", "path", ".", "getsize", "(", "self", ".", "state_file", ")", "<=", "1", ":", "raise", "IOError", "(", "\"File is empty.\"", ")", "with", "open", "(", "self", ".", "state_file", ")", ...	38.125	9.875
def tangent(f): """A decorator which removes the `with insert_grad_of` statement. This allows the function to be called as usual. Args: f: A function Returns: A function with any `with insert_grad_of` context managers removed. """ node = annotate.resolve_calls(f) RemoveWith().visit(node) wrap...	[ "def", "tangent", "(", "f", ")", ":", "node", "=", "annotate", ".", "resolve_calls", "(", "f", ")", "RemoveWith", "(", ")", ".", "visit", "(", "node", ")", "wrapped", "=", "functools", ".", "wraps", "(", "f", ")", "(", "compile_", ".", "compile_funct...	25.0625	22.3125
def copy_ifcfg_file(source_interface, dest_interface): """Copies an existing ifcfg network script to another :param source_interface: String (e.g. 1) :param dest_interface: String (e.g. 0:0) :return: None :raises TypeError, OSError """ log = logging.getLogger(mod_logger + '.copy_ifcfg_file'...	[ "def", "copy_ifcfg_file", "(", "source_interface", ",", "dest_interface", ")", ":", "log", "=", "logging", ".", "getLogger", "(", "mod_logger", "+", "'.copy_ifcfg_file'", ")", "# Validate args", "if", "not", "isinstance", "(", "source_interface", ",", "basestring", ...	40.71831	21.197183
def info(self): """Supplemental description of the list, with length and type""" itext = self.class_info if self.key_prop.info and self.value_prop.info: itext += ' (keys: {}; values: {})'.format( self.key_prop.info, self.value_prop.info ) elif self...	[ "def", "info", "(", "self", ")", ":", "itext", "=", "self", ".", "class_info", "if", "self", ".", "key_prop", ".", "info", "and", "self", ".", "value_prop", ".", "info", ":", "itext", "+=", "' (keys: {}; values: {})'", ".", "format", "(", "self", ".", ...	42.333333	15.5
def get_edit_url( self, md_id: str = None, md_type: str = None, owner_id: str = None, tab: str = "identification", ): """Constructs the edition URL of a metadata. :param str md_id: metadata/resource UUID :param str owner_id: owner UUID :param ...	[ "def", "get_edit_url", "(", "self", ",", "md_id", ":", "str", "=", "None", ",", "md_type", ":", "str", "=", "None", ",", "owner_id", ":", "str", "=", "None", ",", "tab", ":", "str", "=", "\"identification\"", ",", ")", ":", "# checks inputs", "if", "...	30.962963	19.962963
def get_ast_field_name(ast): """Return the normalized field name for the given AST node.""" replacements = { # We always rewrite the following field names into their proper underlying counterparts. TYPENAME_META_FIELD_NAME: '@class' } base_field_name = ast.name.value normalized_name ...	[ "def", "get_ast_field_name", "(", "ast", ")", ":", "replacements", "=", "{", "# We always rewrite the following field names into their proper underlying counterparts.", "TYPENAME_META_FIELD_NAME", ":", "'@class'", "}", "base_field_name", "=", "ast", ".", "name", ".", "value",...	43.444444	19.444444
def expect_column_values_to_not_match_regex_list(self, column, regex_list, mostly=None, result_format=None, include_config=False, catch_exceptions=None, meta=None): """Expect the column entries to be string...	[ "def", "expect_column_values_to_not_match_regex_list", "(", "self", ",", "column", ",", "regex_list", ",", "mostly", "=", "None", ",", "result_format", "=", "None", ",", "include_config", "=", "False", ",", "catch_exceptions", "=", "None", ",", "meta", "=", "Non...	50.136364	30.659091
def _calendar_month_middles(year): """List of middle day of each month, used by Linke turbidity lookup""" # remove mdays[0] since January starts at mdays[1] # make local copy of mdays since we need to change # February for leap years mdays = np.array(calendar.mdays[1:]) ydays = 365 # handle ...	[ "def", "_calendar_month_middles", "(", "year", ")", ":", "# remove mdays[0] since January starts at mdays[1]", "# make local copy of mdays since we need to change", "# February for leap years", "mdays", "=", "np", ".", "array", "(", "calendar", ".", "mdays", "[", "1", ":", ...	39.125	13.625
def nodes_for_spec(self, spec): """ Determine nodes for an input_algorithms spec Taking into account nested specs """ tokens = [] if isinstance(spec, sb.create_spec): container = nodes.container(classes=["option_spec_option shortline blue-back"]) ...	[ "def", "nodes_for_spec", "(", "self", ",", "spec", ")", ":", "tokens", "=", "[", "]", "if", "isinstance", "(", "spec", ",", "sb", ".", "create_spec", ")", ":", "container", "=", "nodes", ".", "container", "(", "classes", "=", "[", "\"option_spec_option s...	43.804878	18.097561
def init_metadata(self, origin, backend_name, backend_version, category, backend_params): """Init metadata information. Metatada is composed by basic information needed to identify where archived data came from and how it can be retrieved and built into Perceval it...	[ "def", "init_metadata", "(", "self", ",", "origin", ",", "backend_name", ",", "backend_version", ",", "category", ",", "backend_params", ")", ":", "created_on", "=", "datetime_to_utc", "(", "datetime_utcnow", "(", ")", ")", "created_on_dumped", "=", "created_on", ...	41.152174	19.282609
def _check_conflict(cls, dirPath, name): """ Check whether the module of the given name conflicts with another module on the sys.path. :param dirPath: the directory from which the module was originally loaded :param name: the mpdule name """ old_sys_path = sys.path ...	[ "def", "_check_conflict", "(", "cls", ",", "dirPath", ",", "name", ")", ":", "old_sys_path", "=", "sys", ".", "path", "try", ":", "sys", ".", "path", "=", "[", "d", "for", "d", "in", "old_sys_path", "if", "os", ".", "path", ".", "realpath", "(", "d...	41.2	22.7
def uint32_to_uint8(cls, img): """ Cast uint32 RGB image to 4 uint8 channels. """ return np.flipud(img.view(dtype=np.uint8).reshape(img.shape + (4,)))	[ "def", "uint32_to_uint8", "(", "cls", ",", "img", ")", ":", "return", "np", ".", "flipud", "(", "img", ".", "view", "(", "dtype", "=", "np", ".", "uint8", ")", ".", "reshape", "(", "img", ".", "shape", "+", "(", "4", ",", ")", ")", ")" ]	35.6	11.2
def find_definition(name, relative_to=None, importer=__import__): """Find definition by name in module-space. The find algorthm will look for definitions by name relative to a message definition or by fully qualfied name. If no definition is found relative to the relative_to parameter it will do the sa...	[ "def", "find_definition", "(", "name", ",", "relative_to", "=", "None", ",", "importer", "=", "__import__", ")", ":", "# Check parameters.", "if", "not", "(", "relative_to", "is", "None", "or", "isinstance", "(", "relative_to", ",", "types", ".", "ModuleType",...	39.830189	21.264151
def absorb_args(self, func): """ Calls a function without any arguments. The returned caller function accepts any arguments (and throws them away). """ @wraps(func) def wrapper(args, *kwargs): return func() return wrapper	[ "def", "absorb_args", "(", "self", ",", "func", ")", ":", "@", "wraps", "(", "func", ")", "def", "wrapper", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "return", "func", "(", ")", "return", "wrapper" ]	31.444444	13
def _fulfills_version_spec(version, version_spec): ''' Check version number against version specification info and return a boolean value based on whether or not the version number meets the specified version. ''' for oper, spec in version_spec: if oper is None: continue ...	[ "def", "_fulfills_version_spec", "(", "version", ",", "version_spec", ")", ":", "for", "oper", ",", "spec", "in", "version_spec", ":", "if", "oper", "is", "None", ":", "continue", "if", "not", "salt", ".", "utils", ".", "versions", ".", "compare", "(", "...	37.916667	25.583333
def _peek_job(self, pos): """ Return the job currently at position `pos`, but still keep it in the job queue. An IndexError will be raised if that position does not currently exist in the job list. :param int pos: Position of the job to get. :return: The job """ ...	[ "def", "_peek_job", "(", "self", ",", "pos", ")", ":", "if", "pos", "<", "len", "(", "self", ".", "_job_info_queue", ")", ":", "return", "self", ".", "_job_info_queue", "[", "pos", "]", ".", "job", "raise", "IndexError", "(", ")" ]	32.923077	21.692308
def OnLinkBitmap(self, event): """Link bitmap event handler""" # Get file name wildcard = "*" message = _("Select bitmap for current cell") style = wx.OPEN \| wx.CHANGE_DIR filepath, __ = \ self.grid.interfaces.get_filepath_findex_from_user(wildcard, ...	[ "def", "OnLinkBitmap", "(", "self", ",", "event", ")", ":", "# Get file name", "wildcard", "=", "\"*\"", "message", "=", "_", "(", "\"Select bitmap for current cell\"", ")", "style", "=", "wx", ".", "OPEN", "\|", "wx", ".", "CHANGE_DIR", "filepath", ",", "__"...	30.869565	19.086957
def _find_neighbors(self, inst, avg_dist): """ Identify nearest as well as farthest hits and misses within radius defined by average distance over whole distance array. This works the same regardless of endpoint type. """ NN_near = [] NN_far = [] min_indices = [] max_indi...	[ "def", "_find_neighbors", "(", "self", ",", "inst", ",", "avg_dist", ")", ":", "NN_near", "=", "[", "]", "NN_far", "=", "[", "]", "min_indices", "=", "[", "]", "max_indices", "=", "[", "]", "for", "i", "in", "range", "(", "self", ".", "_datalen", "...	37.68	12.84
def import_module(filename): """ Returns module object Source: https://www.blog.pythonlibrary.org/2016/05/27/python-201-an-intro-to-importlib/ """ module_name = "xyz" module_spec = importlib.util.spec_from_file_location(module_name, filename) if module_spec is None: rai...	[ "def", "import_module", "(", "filename", ")", ":", "module_name", "=", "\"xyz\"", "module_spec", "=", "importlib", ".", "util", ".", "spec_from_file_location", "(", "module_name", ",", "filename", ")", "if", "module_spec", "is", "None", ":", "raise", "RuntimeErr...	31	22.913043
def search_seqs(self, seqrec, in_seq, locus, run=0, partial_ann=None): """ search_seqs - method for annotating a BioPython sequence without alignment :param seqrec: The reference sequence :type seqrec: SeqRecord :param locus: The gene locus associated with the sequence. ...	[ "def", "search_seqs", "(", "self", ",", "seqrec", ",", "in_seq", ",", "locus", ",", "run", "=", "0", ",", "partial_ann", "=", "None", ")", ":", "# Extract out the sequences and feature names", "# from the reference sequences", "# The mapped features will be subtracted fro...	46.273292	22.070393
def write_study(self, study_id, file_content, branch, author): """Given a study_id, temporary filename of content, branch and auth_info Deprecated but needed until we merge api local-dep to master... """ gh_user = branch.split('_study_')[0] msg = "Update Study #%s via OpenTree ...	[ "def", "write_study", "(", "self", ",", "study_id", ",", "file_content", ",", "branch", ",", "author", ")", ":", "gh_user", "=", "branch", ".", "split", "(", "'_study_'", ")", "[", "0", "]", "msg", "=", "\"Update Study #%s via OpenTree API\"", "%", "study_id...	42.642857	13.285714
def asluav_status_encode(self, LED_status, SATCOM_status, Servo_status, Motor_rpm): ''' Extended state information for ASLUAVs LED_status : Status of the position-indicator LEDs (uint8_t) SATCOM_status : Status of the IRIDIUM sa...	[ "def", "asluav_status_encode", "(", "self", ",", "LED_status", ",", "SATCOM_status", ",", "Servo_status", ",", "Motor_rpm", ")", ":", "return", "MAVLink_asluav_status_message", "(", "LED_status", ",", "SATCOM_status", ",", "Servo_status", ",", "Motor_rpm", ")" ]	56.636364	38.818182
def run_migration(connection, queries, engine): """ Apply a migration to the SQL server """ # Execute query with connection.cursor() as cursorMig: # Parse statements queries = parse_statements(queries, engine) for query in queries: cursorMig.execute(query) conne...	[ "def", "run_migration", "(", "connection", ",", "queries", ",", "engine", ")", ":", "# Execute query", "with", "connection", ".", "cursor", "(", ")", "as", "cursorMig", ":", "# Parse statements", "queries", "=", "parse_statements", "(", "queries", ",", "engine",...	26.076923	17.538462
def createDenseCNNModel(self): """ Create a standard network composed of two CNN / MaxPool layers followed by a linear layer with using ReLU activation between the layers """ # Create denseCNN2 model model = nn.Sequential( nn.Conv2d(in_channels=self.in_channels, out_channels=self.out_chan...	[ "def", "createDenseCNNModel", "(", "self", ")", ":", "# Create denseCNN2 model", "model", "=", "nn", ".", "Sequential", "(", "nn", ".", "Conv2d", "(", "in_channels", "=", "self", ".", "in_channels", ",", "out_channels", "=", "self", ".", "out_channels", "[", ...	30.333333	21.121212
def remove_allocated_node_name(self, name): """ Removes an allocated node name :param name: allocated node name """ if name in self._allocated_node_names: self._allocated_node_names.remove(name)	[ "def", "remove_allocated_node_name", "(", "self", ",", "name", ")", ":", "if", "name", "in", "self", ".", "_allocated_node_names", ":", "self", ".", "_allocated_node_names", ".", "remove", "(", "name", ")" ]	26.666667	11.333333
def setOrientation( self, orientation ): """ Sets the orientation for this toolbar to the inputed value, and \ updates the contents margins and collapse button based on the vaule. :param orientation \| <Qt.Orientation> """ super(XToolBar, self).setOrientation...	[ "def", "setOrientation", "(", "self", ",", "orientation", ")", ":", "super", "(", "XToolBar", ",", "self", ")", ".", "setOrientation", "(", "orientation", ")", "self", ".", "refreshButton", "(", ")" ]	39.333333	15.555556
def _calc_eddy_time(self): """ estimate the eddy turn-over time in days """ ens = 0. for j in range(self.nz): ens = .5self.Hi[j] self.spec_var(self.wv2self.ph[j]) return 2.pi*np.sqrt( self.H / ens.sum() ) / 86400	[ "def", "_calc_eddy_time", "(", "self", ")", ":", "ens", "=", "0.", "for", "j", "in", "range", "(", "self", ".", "nz", ")", ":", "ens", "=", ".5", "", "self", ".", "Hi", "[", "j", "]", "", "self", ".", "spec_var", "(", "self", ".", "wv2", "*...	36.571429	18.857143
def _get_destcache(self, graph, orig, branch, turn, tick, *, forward): """Return a set of destination nodes succeeding ``orig``""" destcache, destcache_lru, get_keycachelike, successors, adds_dels_sucpred = self._get_destcache_stuff lru_append(destcache, destcache_lru, ((graph, orig, branch), tu...	[ "def", "_get_destcache", "(", "self", ",", "graph", ",", "orig", ",", "branch", ",", "turn", ",", "tick", ",", "*", ",", "forward", ")", ":", "destcache", ",", "destcache_lru", ",", "get_keycachelike", ",", "successors", ",", "adds_dels_sucpred", "=", "sel...	62.625	29
def parse_addr(addr, *, proto=None, host=None): """Parses an address Returns: Address: the parsed address """ port = None if isinstance(addr, Address): return addr elif isinstance(addr, str): if addr.startswith('http://'): proto, addr = 'http', addr[7:] ...	[ "def", "parse_addr", "(", "addr", ",", "*", ",", "proto", "=", "None", ",", "host", "=", "None", ")", ":", "port", "=", "None", "if", "isinstance", "(", "addr", ",", "Address", ")", ":", "return", "addr", "elif", "isinstance", "(", "addr", ",", "st...	26.942857	12.457143
def _run_command_in_extended_path(syslog_ng_sbin_dir, command, params): ''' Runs the specified command with the syslog_ng_sbin_dir in the PATH ''' orig_path = os.environ.get('PATH', '') env = None if syslog_ng_sbin_dir: # Custom environment variables should be str types. This code ...	[ "def", "_run_command_in_extended_path", "(", "syslog_ng_sbin_dir", ",", "command", ",", "params", ")", ":", "orig_path", "=", "os", ".", "environ", ".", "get", "(", "'PATH'", ",", "''", ")", "env", "=", "None", "if", "syslog_ng_sbin_dir", ":", "# Custom enviro...	38.95	23.05
def scale_points(df_points, scale=INKSCAPE_PPmm.magnitude, inplace=False): ''' Translate points such that bounding box is anchored at (0, 0) and scale ``x`` and ``y`` columns of input frame by specified :data:`scale`. Parameters ---------- df_points : pandas.DataFrame Table of ``x``/``y...	[ "def", "scale_points", "(", "df_points", ",", "scale", "=", "INKSCAPE_PPmm", ".", "magnitude", ",", "inplace", "=", "False", ")", ":", "if", "not", "inplace", ":", "df_points", "=", "df_points", ".", "copy", "(", ")", "# Offset device, such that all coordinates ...	29.777778	22.311111
def do_usufy(self, query, **kwargs): """ Verifying a usufy query in this platform. This might be redefined in any class inheriting from Platform. Args: ----- query: The element to be searched. Return: ------- A list of elements to be app...	[ "def", "do_usufy", "(", "self", ",", "query", ",", "", "", "kwargs", ")", ":", "results", "=", "[", "]", "test", "=", "self", ".", "check_usufy", "(", "query", ",", "", "", "kwargs", ")", "if", "test", ":", "r", "=", "{", "\"type\"", ":", "...	27.708333	16.541667
def insurance_limit(self, loss_type, dummy=None): """ :returns: the limit fraction of the asset cost for `loss_type` """ val = self.calc(loss_type, self.insurance_limits, self.area, self.number) if self.calc.limit_abs: # convert to relative value ...	[ "def", "insurance_limit", "(", "self", ",", "loss_type", ",", "dummy", "=", "None", ")", ":", "val", "=", "self", ".", "calc", "(", "loss_type", ",", "self", ".", "insurance_limits", ",", "self", ".", "area", ",", "self", ".", "number", ")", "if", "s...	41.454545	15.636364
def serialize_message(self, message: SegmentSequence) -> bytes: """Serialize a message (as SegmentSequence, list of FinTS3Segment, or FinTS3Segment) into a byte array""" if isinstance(message, FinTS3Segment): message = SegmentSequence([message]) if isinstance(message, (list, tuple, I...	[ "def", "serialize_message", "(", "self", ",", "message", ":", "SegmentSequence", ")", "->", "bytes", ":", "if", "isinstance", "(", "message", ",", "FinTS3Segment", ")", ":", "message", "=", "SegmentSequence", "(", "[", "message", "]", ")", "if", "isinstance"...	41.461538	17.538462
def get(self, *keys: str, default: Any = NOT_SET) -> Any: """ Returns values from the settings in the order of keys, the first value encountered is used. Example: >>> settings = Settings({"ARCA_ONE": 1, "ARCA_TWO": 2}) >>> settings.get("one") 1 >>> settings.get("one", "...	[ "def", "get", "(", "self", ",", "*", "keys", ":", "str", ",", "default", ":", "Any", "=", "NOT_SET", ")", "->", "Any", ":", "if", "not", "len", "(", "keys", ")", ":", "raise", "ValueError", "(", "\"At least one key must be provided.\"", ")", "for", "op...	33.295455	23.022727
def Dump(self, key = None): """ Using the standard Python pretty printer, return the contents of the scons build environment as a string. If the key passed in is anything other than None, then that will be used as an index into the build environment dictionary and whatev...	[ "def", "Dump", "(", "self", ",", "key", "=", "None", ")", ":", "import", "pprint", "pp", "=", "pprint", ".", "PrettyPrinter", "(", "indent", "=", "2", ")", "if", "key", ":", "dict", "=", "self", ".", "Dictionary", "(", "key", ")", "else", ":", "d...	36.529412	16.176471
def _render_child_fragment(self, child, context, view='student_view'): """ Helper method to overcome html block rendering quirks """ try: child_fragment = child.render(view, context) except NoSuchViewError: if child.scope_ids.block_type == 'html' and getat...	[ "def", "_render_child_fragment", "(", "self", ",", "child", ",", "context", ",", "view", "=", "'student_view'", ")", ":", "try", ":", "child_fragment", "=", "child", ".", "render", "(", "view", ",", "context", ")", "except", "NoSuchViewError", ":", "if", "...	48.2	26.866667
def _matches_patterns(path, patterns): """Given a list of patterns, returns a if a path matches any pattern.""" for glob in patterns: try: if PurePath(path).match(glob): return True except TypeError: pass return False	[ "def", "_matches_patterns", "(", "path", ",", "patterns", ")", ":", "for", "glob", "in", "patterns", ":", "try", ":", "if", "PurePath", "(", "path", ")", ".", "match", "(", "glob", ")", ":", "return", "True", "except", "TypeError", ":", "pass", "return...	34.333333	11.444444
def close_application(self): """Closes the current application and also close webdriver session.""" self._debug('Closing application with session id %s' % self._current_application().session_id) self._cache.close()	[ "def", "close_application", "(", "self", ")", ":", "self", ".", "_debug", "(", "'Closing application with session id %s'", "%", "self", ".", "_current_application", "(", ")", ".", "session_id", ")", "self", ".", "_cache", ".", "close", "(", ")" ]	59.5	21.75
def plot_reaction_scheme(df, temperature, pressure, potential, pH, e_lim=None): """Returns a matplotlib object with the plotted reaction path. Parameters ---------- df : Pandas DataFrame generated by reaction_network temperature : numeric temperature in K pressure : numeric press...	[ "def", "plot_reaction_scheme", "(", "df", ",", "temperature", ",", "pressure", ",", "potential", ",", "pH", ",", "e_lim", "=", "None", ")", ":", "ncols", "=", "int", "(", "(", "df", ".", "shape", "[", "0", "]", "/", "20", ")", ")", "+", "1", "fig...	39.872093	22.627907
def authenticate(self): """ Handles authentication, and persists the X-APPLE-WEB-KB cookie so that subsequent logins will not cause additional e-mails from Apple. """ logger.info("Authenticating as %s", self.user['apple_id']) data = dict(self.user) # We authent...	[ "def", "authenticate", "(", "self", ")", ":", "logger", ".", "info", "(", "\"Authenticating as %s\"", ",", "self", ".", "user", "[", "'apple_id'", "]", ")", "data", "=", "dict", "(", "self", ".", "user", ")", "# We authenticate every time, so \"remember me\" is ...	33.138889	20.305556
def _post_json(self, url, data, **kw): ''' Makes a POST request, setting Authorization and Content-Type headers by default ''' data = json.dumps(data) headers = kw.pop('headers', {}) headers.setdefault('Content-Type', 'application/json') headers.setdefault...	[ "def", "_post_json", "(", "self", ",", "url", ",", "data", ",", "", "", "kw", ")", ":", "data", "=", "json", ".", "dumps", "(", "data", ")", "headers", "=", "kw", ".", "pop", "(", "'headers'", ",", "{", "}", ")", "headers", ".", "setdefault", ...	33.384615	14.615385
def get_Cpt_params(A, Cnodes, AggOp, T): """Return C and F pts. Helper function that returns a dictionary of sparse matrices and arrays which allow us to easily operate on Cpts and Fpts separately. Parameters ---------- A : {csr_matrix, bsr_matrix} Operator Cnodes : {array} ...	[ "def", "get_Cpt_params", "(", "A", ",", "Cnodes", ",", "AggOp", ",", "T", ")", ":", "if", "not", "isspmatrix_bsr", "(", "A", ")", "and", "not", "isspmatrix_csr", "(", "A", ")", ":", "raise", "TypeError", "(", "'Expected BSR or CSR matrix A'", ")", "if", ...	35.054422	18.29932
def set_location(self, time, latitude, longitude): ''' Sets the location for the query. Parameters ---------- time: datetime or DatetimeIndex Time range of the query. ''' if isinstance(time, datetime.datetime): tzinfo = time.tzinfo ...	[ "def", "set_location", "(", "self", ",", "time", ",", "latitude", ",", "longitude", ")", ":", "if", "isinstance", "(", "time", ",", "datetime", ".", "datetime", ")", ":", "tzinfo", "=", "time", ".", "tzinfo", "else", ":", "tzinfo", "=", "time", ".", ...	28.166667	18.722222
def pdf_to_text(pdf_filepath='', **kwargs): """ Parse pdf to a list of strings using the pdfminer lib. Args: no_laparams=False, all_texts=None, detect_vertical=None, word_margin=None, char_margin=None, line_margin=None, boxes_flow=None, codec='utf-8', strip_control=F...	[ "def", "pdf_to_text", "(", "pdf_filepath", "=", "''", ",", "", "", "kwargs", ")", ":", "result", "=", "[", "]", "try", ":", "if", "not", "os", ".", "path", ".", "exists", "(", "pdf_filepath", ")", ":", "raise", "ValueError", "(", "\"No valid pdf file...	35.216216	21.810811
def find_by_uuid(self, si, uuid, is_vm=True, path=None, data_center=None): """ Finds vm/host by his uuid in the vCenter or returns "None" :param si: pyvmomi 'ServiceInstance' :param uuid: the object uuid :param path: the path to find the object ('dc' or 'dc/f...	[ "def", "find_by_uuid", "(", "self", ",", "si", ",", "uuid", ",", "is_vm", "=", "True", ",", "path", "=", "None", ",", "data_center", "=", "None", ")", ":", "if", "uuid", "is", "None", ":", "return", "None", "if", "path", "is", "not", "None", ":", ...	41.333333	24.333333
def balance(ctx): """ Show Zebra balance. Like the hours balance, vacation left, etc. """ backend = plugins_registry.get_backends_by_class(ZebraBackend)[0] timesheet_collection = get_timesheet_collection_for_context(ctx, None) hours_to_be_pushed = timesheet_collection.get_hours(pushed=Fals...	[ "def", "balance", "(", "ctx", ")", ":", "backend", "=", "plugins_registry", ".", "get_backends_by_class", "(", "ZebraBackend", ")", "[", "0", "]", "timesheet_collection", "=", "get_timesheet_collection_for_context", "(", "ctx", ",", "None", ")", "hours_to_be_pushed"...	42.8	28.48
def _compute_C_matrix(self): """See Fouss et al. (2006) and von Luxburg et al. (2007). This is the commute-time matrix. It's a squared-euclidian distance matrix in :math:`\\mathbb{R}^n`. """ self.C = np.repeat(np.diag(self.Lp)[:, np.newaxis], self.Lp.s...	[ "def", "_compute_C_matrix", "(", "self", ")", ":", "self", ".", "C", "=", "np", ".", "repeat", "(", "np", ".", "diag", "(", "self", ".", "Lp", ")", "[", ":", ",", "np", ".", "newaxis", "]", ",", "self", ".", "Lp", ".", "shape", "[", "0", "]",...	43.15	13.45
def _is_match(self, response, answer): """For MC, can call through to MultiChoice Item Record?""" # TODO: this varies depending on question type if self._only_generic_right_feedback(): return str(answer.genus_type) == str(RIGHT_ANSWER_GENUS) elif self._is_multiple_choice(): ...	[ "def", "_is_match", "(", "self", ",", "response", ",", "answer", ")", ":", "# TODO: this varies depending on question type", "if", "self", ".", "_only_generic_right_feedback", "(", ")", ":", "return", "str", "(", "answer", ".", "genus_type", ")", "==", "str", "(...	56.642857	19.5
def parsemail(raw_message): """Parse message headers, then remove BCC header.""" message = email.parser.Parser().parsestr(raw_message) # Detect encoding detected = chardet.detect(bytearray(raw_message, "utf-8")) encoding = detected["encoding"] print(">>> encoding {}".format(encoding)) for p...	[ "def", "parsemail", "(", "raw_message", ")", ":", "message", "=", "email", ".", "parser", ".", "Parser", "(", ")", ".", "parsestr", "(", "raw_message", ")", "# Detect encoding", "detected", "=", "chardet", ".", "detect", "(", "bytearray", "(", "raw_message",...	36.913043	16.391304
def add_source_root(self, path, langs=tuple(), category=SourceRootCategories.UNKNOWN): """Add the specified fixed source root, which must be relative to the buildroot. Useful in a limited set of circumstances, e.g., when unpacking sources from a jar with unknown structure. Tests should prefer to use dirs ...	[ "def", "add_source_root", "(", "self", ",", "path", ",", "langs", "=", "tuple", "(", ")", ",", "category", "=", "SourceRootCategories", ".", "UNKNOWN", ")", ":", "self", ".", "_trie", ".", "add_fixed", "(", "path", ",", "langs", ",", "category", ")" ]	57.125	25.75
def gist(cls, gistid): """gistid must be in a username/id form""" url = "https://gist.github.com/{}.js".format(gistid) script = "<script src=\"{}\"></script>".format(url) return script	[ "def", "gist", "(", "cls", ",", "gistid", ")", ":", "url", "=", "\"https://gist.github.com/{}.js\"", ".", "format", "(", "gistid", ")", "script", "=", "\"<script src=\\\"{}\\\"></script>\"", ".", "format", "(", "url", ")", "return", "script" ]	42.4	15.2
def convertToDatetime(fmt="%Y-%m-%dT%H:%M:%S.%f"): """Helper to create a parse action for converting parsed datetime string to Python datetime.datetime Params - - fmt - format to be passed to datetime.strptime (default= ``"%Y-%m-%dT%H:%M:%S.%f"``) Example:: dt_exp...	[ "def", "convertToDatetime", "(", "fmt", "=", "\"%Y-%m-%dT%H:%M:%S.%f\"", ")", ":", "def", "cvt_fn", "(", "s", ",", "l", ",", "t", ")", ":", "try", ":", "return", "datetime", ".", "strptime", "(", "t", "[", "0", "]", ",", "fmt", ")", "except", "ValueE...	34.130435	23.217391
def write_new_expr_id(self, search_group, search, lars_id, instruments, gps_start_time, gps_end_time, comments = None): """ Creates a new def_id for the given arguments and returns it. If an entry already exists with these, will just return that id. @search_group: string representing the search group (e.g., c...	[ "def", "write_new_expr_id", "(", "self", ",", "search_group", ",", "search", ",", "lars_id", ",", "instruments", ",", "gps_start_time", ",", "gps_end_time", ",", "comments", "=", "None", ")", ":", "# check if id already exists", "check_id", "=", "self", ".", "ge...	37.625	22.875

def _info_long(self) -> Optional[str]: """Extract journey information.""" try: return str( html.unescape(self.journey.InfoTextList.InfoText.get("textL")).replace( "<br />", "\n" ) ) except AttributeError: ret...

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def _aha_request(self, cmd, ain=None, param=None, rf=str): """Send an AHA request.""" url = 'http://' + self._host + '/webservices/homeautoswitch.lua' params = { 'switchcmd': cmd, 'sid': self._sid } if param: params['param'] = param if ...

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def get_interface_switchport_output_switchport_interface_name(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") get_interface_switchport = ET.Element("get_interface_switchport") config = get_interface_switchport output = ET.SubElement(get_interface...

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def send_activation_email(user, site): """ Send an activation email to the ``user``. The activation email will make use of two templates: ``registration/activation_email_subject.txt`` This template will be used for the subject line of the email. Because it is used as the subject line of an emai...

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def ess(sim, n): """Calculate effective sample size Parameters ---------- sim : chains n : int Parameter index starting from 0 """ try: ess = _chains.effective_sample_size(sim, n) except (ValueError, ZeroDivisionError): ess = nan return ess

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def login(self, login, password, set_auth=False): """ Attempts a login to the remote server and on success returns user id and session or None Warning: Do not depend on this. This will be deprecated with SSO. param set_auth: sets the authentication on the client...

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def setDisallowed(self, laneID, disallowedClasses): """setDisallowed(string, list) -> None Sets a list of disallowed vehicle classes. """ if isinstance(disallowedClasses, str): disallowedClasses = [disallowedClasses] self._connection._beginMessage(tc.CMD_SET_LANE_VAR...

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def get_data(source, fields='*', env=None, first_row=0, count=-1, schema=None): """ A utility function to get a subset of data from a Table, Query, Pandas dataframe or List. Args: source: the source of the data. Can be a Table, Pandas DataFrame, List of dictionaries or lists, or a string, in which case...

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def deleteThreads(self, thread_ids): """ Deletes threads :param thread_ids: Thread IDs to delete. See :ref:`intro_threads` :return: Whether the request was successful :raises: FBchatException if request failed """ thread_ids = require_list(thread_ids) da...

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def comment_create(self, post_id, comment_body, anonymous=None): """Action to lets you create a comment (Requires login). Parameters: post_id (int): The post id number to which you are responding. comment_body (str): The body of the comment. anonymous (int): Set to 1...

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def roundup(self, minimum_distance): """ If the minimum_distance is nonzero, returns a copy of the DistancesContext with updated distances, i.e. the ones below minimum_distance are rounded up to the minimum_distance. Otherwise, returns the original DistancesContext unchanged. ...

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def assert_raises_regex(exception, regex, msg_fmt="{msg}"): """Fail unless an exception with a message that matches a regular expression is raised within the context. The regular expression can be a regular expression string or object. >>> with assert_raises_regex(ValueError, r"\\d+"): ... ra...

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def _point_scalar(self, name=None): """ Returns point scalars of a vtk object Parameters ---------- name : str Name of point scalars to retrive. Returns ------- scalars : np.ndarray Numpy array of scalars """ if n...

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def set_properties(self, path, mode): """Set file's properties (name and mode). This function is also in charge of swapping between textual and binary streams. """ self.name = path self.mode = mode if 'b' in self.mode: if not isinstance(self.read_dat...

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def get_base_branch(): # type: () -> str """ Return the base branch for the current branch. This function will first try to guess the base branch and if it can't it will let the user choose the branch from the list of all local branches. Returns: str: The name of the branch the current bra...

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def all_finite(self,X): """returns true if X is finite, false, otherwise""" # Adapted from sklearn utils: _assert_all_finite(X) # First try an O(n) time, O(1) space solution for the common case that # everything is finite; fall back to O(n) space np.isfinite to prevent # false po...

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def package(self): """ Find a package name from a build task's parameters. :returns: name of the package this build task is building. :raises: ValueError if we could not parse this tasks's request params. """ if self.method == 'buildNotification': return self...

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def enrich(self, columns): """ This method appends at the end of the dataframe as many rows as items are found in the list of elemnents in the provided columns. This assumes that the length of the lists for the several specified columns is the same. As an example, for the row A ...

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def lint(session): """Run flake8. Returns a failure if flake8 finds linting errors or sufficiently serious code quality issues. """ session.interpreter = 'python3.6' session.install('flake8') # Install dev packages. _install_dev_packages(session) session.run( 'flake8', ...

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def new_transient(self, ext=''): '''Creates empty TransientFile with random name and given extension. File on FS is not created''' name = random_name(self.transient_length) + ext return TransientFile(self.transient_root, name, self)

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def copytree(src, dst, symlinks=False, ignore=None): """Recursively copy a directory tree using copy2(). The destination directory must not already exist. If exception(s) occur, an Error is raised with a list of reasons. If the optional symlinks flag is true, symbolic links in the source tree resu...

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def cmd_quick(action, action_space, ability_id, queued): """Do a quick command like 'Stop' or 'Stim'.""" action_cmd = spatial(action, action_space).unit_command action_cmd.ability_id = ability_id action_cmd.queue_command = queued

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def _get_variable_name_or_register(var, variables, names, params, prefix): ''' Args: var (~nnabla.Variable) variables (OrderedDict) names (dict): Force name table, Variable -> str params (dict): NdArray -> str prefix(str) ''' if var not in variables.values(): ...

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def encode_fetch_request(cls, client_id, correlation_id, payloads=None, max_wait_time=100, min_bytes=4096): """ Encodes some FetchRequest structs Arguments: client_id: string correlation_id: int payloads: list of FetchRequest ...

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def sensoryCompute(self, activeMinicolumns, learn): """ @param activeMinicolumns (numpy array) List of indices of minicolumns to activate. @param learn (bool) If True, the two layers should learn this association. @return (tuple of dicts) Data for logging/tracing. """ inputParams =...

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def trim_tree(tree): """ Remove the dead branches of tree, that is, the resulting tree accepts the same language as the original one (that is, the same words that end with the < character), but parts of the tree that lead to nothing are removed. :param tree: the tree; ...

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def add_function(self, function_id=None, function=None, inputs=None, outputs=None, input_domain=None, weight=None, inp_weight=None, out_weight=None, description=None, filters=None, await_domain=None, await_result=None, **kwargs): ...

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def HWProcess(cls, proc: HWProcess, ctx: ResourceContext) -> None: """ Gues resource usage by HWProcess """ seen = ctx.seen for stm in proc.statements: encl = stm._enclosed_for full_ev_dep = stm._is_completly_event_dependent now_ev_dep = stm._n...

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def set_ctype(self, ctype, orig_ctype=None): """ Set the selected content type. Will not override the value of the content type if that has already been determined. :param ctype: The content type string to set. :param orig_ctype: The original content type, as found in the ...

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def start(self): """Public method for initiating connectivity with the emby server.""" asyncio.ensure_future(self.register(), loop=self._event_loop) if self._own_loop: _LOGGER.info("Starting up our own event loop.") self._event_loop.run_forever() self._event_...

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def appendText(self, text): ''' appendText - append some inner text ''' # self.text is just raw string of the text self.text += text self.isSelfClosing = False # inner text means it can't self close anymo # self.blocks is either text or tags, in order of appea...

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def calculate_hash(options): """returns an option_collection_hash given a list of options""" options = sorted(list(options)) sha_hash = sha1() # equivalent to loop over the options and call sha_hash.update() sha_hash.update(''.join(options).encode('utf-8')) return sha_has...

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def oops(self): '''Out Of Phase Stereo effect. Mixes stereo to twin-mono where each mono channel contains the difference between the left and right stereo channels. This is sometimes known as the 'karaoke' effect as it often has the effect of removing most or all of the vocals from a rec...

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def add_event(self, source, reference, event_title, event_type, method='', description='', bucket_list=[], campaign='', confidence='', date=...

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def optimal_variational_posterior( kernel, inducing_index_points, observation_index_points, observations, observation_noise_variance, mean_fn=None, jitter=1e-6, name=None): """Model selection for optimal variational hyperparameters. Given the full training set (p...

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def engine(log_file, no_distribute, yes, config_file, make_html_report, upgrade_db, db_version, what_if_I_upgrade, run, list_hazard_calculations, list_risk_calculations, delete_calculation, delete_uncompleted_calculations, hazard_calculation_id, list_outputs, show_log, ...

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def normalize_pts(pts, ymax, scaler=2): """ scales all coordinates and flip y axis due to different origin coordinates (top left vs. bottom left) """ return [(x * scaler, ymax - (y * scaler)) for x, y in pts]

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37.166667

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def _initVirtualOutputs(self): """ Sets up the structure to hold all the output data arrays for this image in memory. """ self.virtualOutputs = {} for product in self.outputNames: self.virtualOutputs[product] = None

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async def get_json( self, force: bool=False, silent: bool=False, cache: bool=True, ) -> Any: """Parses the body data as JSON and returns it. Arguments: force: Force JSON parsing even if the mimetype is not JSON. silent: Do not trigger error handling if parsing fails,...

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def define_charset(self, code, mode): """Define ``G0`` or ``G1`` charset. :param str code: character set code, should be a character from ``"B0UK"``, otherwise ignored. :param str mode: if ``"("`` ``G0`` charset is defined, if ``")"`` -- we oper...

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def similarity_graph(self, k=5, radius=None, include_self_edges=False, output_type='SGraph', verbose=True): """ Construct the similarity graph on the reference dataset, which is already stored in the model. This is conceptually very similar to running `query` wit...

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def generate_binding_credentials(self, binding): """Generate binding credentials This function will permit to define the configuration to connect to the instance. Those credentials will be stored on a secret and exposed to a a Pod. We should at least returns the...

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def hasKey(self, key, notNone=False): '''Return entries where the key is present. Example of use: >>> test = [ ... {"name": "Jim", "age": 18, "income": 93000, "wigs": 68 }, ... {"name": "Larry", "age": 18, "wigs": [3, 2, 9]}, ... {"name...

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def getFrameDimensions(data, page_width, page_height): """Calculate dimensions of a frame Returns left, top, width and height of the frame in points. """ box = data.get("-pdf-frame-box", []) if len(box) == 4: return [getSize(x) for x in box] top = getSize(data.get("top", 0)) left = ...

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def find_protoc(path=os.environ['PATH']): ''' Traverse a path ($PATH by default) to find the protoc compiler ''' protoc_filename = 'protoc' bin_search_paths = path.split(':') or [] for search_path in bin_search_paths: bin_path = os.path.join(search_path, protoc_filename) ...

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def downstream(self, node): """ Returns a list of all nodes this node has edges towards. Args: node (str): The node whose downstream nodes you want to find. Returns: list: A list of nodes that are immediately downstream from the node. """ ...

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def load(self): "Loads the state from the state file" try: if os.path.getsize(self.state_file) <= 1: raise IOError("File is empty.") with open(self.state_file) as fh: state = json.load(fh) assert isinstance(state, dict) ...

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38.125

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def tangent(f): """A decorator which removes the `with insert_grad_of` statement. This allows the function to be called as usual. Args: f: A function Returns: A function with any `with insert_grad_of` context managers removed. """ node = annotate.resolve_calls(f) RemoveWith().visit(node) wrap...

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def copy_ifcfg_file(source_interface, dest_interface): """Copies an existing ifcfg network script to another :param source_interface: String (e.g. 1) :param dest_interface: String (e.g. 0:0) :return: None :raises TypeError, OSError """ log = logging.getLogger(mod_logger + '.copy_ifcfg_file'...

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def info(self): """Supplemental description of the list, with length and type""" itext = self.class_info if self.key_prop.info and self.value_prop.info: itext += ' (keys: {}; values: {})'.format( self.key_prop.info, self.value_prop.info ) elif self...

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42.333333

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def get_edit_url( self, md_id: str = None, md_type: str = None, owner_id: str = None, tab: str = "identification", ): """Constructs the edition URL of a metadata. :param str md_id: metadata/resource UUID :param str owner_id: owner UUID :param ...

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30.962963

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def get_ast_field_name(ast): """Return the normalized field name for the given AST node.""" replacements = { # We always rewrite the following field names into their proper underlying counterparts. TYPENAME_META_FIELD_NAME: '@class' } base_field_name = ast.name.value normalized_name ...

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43.444444

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def expect_column_values_to_not_match_regex_list(self, column, regex_list, mostly=None, result_format=None, include_config=False, catch_exceptions=None, meta=None): """Expect the column entries to be string...

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50.136364

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def _calendar_month_middles(year): """List of middle day of each month, used by Linke turbidity lookup""" # remove mdays[0] since January starts at mdays[1] # make local copy of mdays since we need to change # February for leap years mdays = np.array(calendar.mdays[1:]) ydays = 365 # handle ...

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39.125

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def nodes_for_spec(self, spec): """ Determine nodes for an input_algorithms spec Taking into account nested specs """ tokens = [] if isinstance(spec, sb.create_spec): container = nodes.container(classes=["option_spec_option shortline blue-back"]) ...

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43.804878

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def init_metadata(self, origin, backend_name, backend_version, category, backend_params): """Init metadata information. Metatada is composed by basic information needed to identify where archived data came from and how it can be retrieved and built into Perceval it...

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def _check_conflict(cls, dirPath, name): """ Check whether the module of the given name conflicts with another module on the sys.path. :param dirPath: the directory from which the module was originally loaded :param name: the mpdule name """ old_sys_path = sys.path ...

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41.2

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def uint32_to_uint8(cls, img): """ Cast uint32 RGB image to 4 uint8 channels. """ return np.flipud(img.view(dtype=np.uint8).reshape(img.shape + (4,)))

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35.6

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def find_definition(name, relative_to=None, importer=__import__): """Find definition by name in module-space. The find algorthm will look for definitions by name relative to a message definition or by fully qualfied name. If no definition is found relative to the relative_to parameter it will do the sa...

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39.830189

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def absorb_args(self, func): """ Calls a function without any arguments. The returned caller function accepts any arguments (and throws them away). """ @wraps(func) def wrapper(*args, **kwargs): return func() return wrapper

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31.444444

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def _fulfills_version_spec(version, version_spec): ''' Check version number against version specification info and return a boolean value based on whether or not the version number meets the specified version. ''' for oper, spec in version_spec: if oper is None: continue ...

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37.916667

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def _peek_job(self, pos): """ Return the job currently at position `pos`, but still keep it in the job queue. An IndexError will be raised if that position does not currently exist in the job list. :param int pos: Position of the job to get. :return: The job """ ...

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32.923077

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def OnLinkBitmap(self, event): """Link bitmap event handler""" # Get file name wildcard = "*" message = _("Select bitmap for current cell") style = wx.OPEN | wx.CHANGE_DIR filepath, __ = \ self.grid.interfaces.get_filepath_findex_from_user(wildcard, ...

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30.869565

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def _find_neighbors(self, inst, avg_dist): """ Identify nearest as well as farthest hits and misses within radius defined by average distance over whole distance array. This works the same regardless of endpoint type. """ NN_near = [] NN_far = [] min_indices = [] max_indi...

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37.68

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def import_module(filename): """ Returns module object Source: https://www.blog.pythonlibrary.org/2016/05/27/python-201-an-intro-to-importlib/ """ module_name = "xyz" module_spec = importlib.util.spec_from_file_location(module_name, filename) if module_spec is None: rai...

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31

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def search_seqs(self, seqrec, in_seq, locus, run=0, partial_ann=None): """ search_seqs - method for annotating a BioPython sequence without alignment :param seqrec: The reference sequence :type seqrec: SeqRecord :param locus: The gene locus associated with the sequence. ...

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46.273292

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def write_study(self, study_id, file_content, branch, author): """Given a study_id, temporary filename of content, branch and auth_info Deprecated but needed until we merge api local-dep to master... """ gh_user = branch.split('_study_')[0] msg = "Update Study #%s via OpenTree ...

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42.642857

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def asluav_status_encode(self, LED_status, SATCOM_status, Servo_status, Motor_rpm): ''' Extended state information for ASLUAVs LED_status : Status of the position-indicator LEDs (uint8_t) SATCOM_status : Status of the IRIDIUM sa...

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56.636364

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def run_migration(connection, queries, engine): """ Apply a migration to the SQL server """ # Execute query with connection.cursor() as cursorMig: # Parse statements queries = parse_statements(queries, engine) for query in queries: cursorMig.execute(query) conne...

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26.076923

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def createDenseCNNModel(self): """ Create a standard network composed of two CNN / MaxPool layers followed by a linear layer with using ReLU activation between the layers """ # Create denseCNN2 model model = nn.Sequential( nn.Conv2d(in_channels=self.in_channels, out_channels=self.out_chan...

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30.333333

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def remove_allocated_node_name(self, name): """ Removes an allocated node name :param name: allocated node name """ if name in self._allocated_node_names: self._allocated_node_names.remove(name)

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26.666667

11.333333

def setOrientation( self, orientation ): """ Sets the orientation for this toolbar to the inputed value, and \ updates the contents margins and collapse button based on the vaule. :param orientation | <Qt.Orientation> """ super(XToolBar, self).setOrientation...

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39.333333

15.555556

def _calc_eddy_time(self): """ estimate the eddy turn-over time in days """ ens = 0. for j in range(self.nz): ens = .5*self.Hi[j] * self.spec_var(self.wv2*self.ph[j]) return 2.*pi*np.sqrt( self.H / ens.sum() ) / 86400

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36.571429

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def _get_destcache(self, graph, orig, branch, turn, tick, *, forward): """Return a set of destination nodes succeeding ``orig``""" destcache, destcache_lru, get_keycachelike, successors, adds_dels_sucpred = self._get_destcache_stuff lru_append(destcache, destcache_lru, ((graph, orig, branch), tu...

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62.625

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def parse_addr(addr, *, proto=None, host=None): """Parses an address Returns: Address: the parsed address """ port = None if isinstance(addr, Address): return addr elif isinstance(addr, str): if addr.startswith('http://'): proto, addr = 'http', addr[7:] ...

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def _run_command_in_extended_path(syslog_ng_sbin_dir, command, params): ''' Runs the specified command with the syslog_ng_sbin_dir in the PATH ''' orig_path = os.environ.get('PATH', '') env = None if syslog_ng_sbin_dir: # Custom environment variables should be str types. This code ...

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def scale_points(df_points, scale=INKSCAPE_PPmm.magnitude, inplace=False): ''' Translate points such that bounding box is anchored at (0, 0) and scale ``x`` and ``y`` columns of input frame by specified :data:`scale`. Parameters ---------- df_points : pandas.DataFrame Table of ``x``/``y...

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def do_usufy(self, query, **kwargs): """ Verifying a usufy query in this platform. This might be redefined in any class inheriting from Platform. Args: ----- query: The element to be searched. Return: ------- A list of elements to be app...

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def insurance_limit(self, loss_type, dummy=None): """ :returns: the limit fraction of the asset cost for `loss_type` """ val = self.calc(loss_type, self.insurance_limits, self.area, self.number) if self.calc.limit_abs: # convert to relative value ...

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def serialize_message(self, message: SegmentSequence) -> bytes: """Serialize a message (as SegmentSequence, list of FinTS3Segment, or FinTS3Segment) into a byte array""" if isinstance(message, FinTS3Segment): message = SegmentSequence([message]) if isinstance(message, (list, tuple, I...

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41.461538

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def get(self, *keys: str, default: Any = NOT_SET) -> Any: """ Returns values from the settings in the order of keys, the first value encountered is used. Example: >>> settings = Settings({"ARCA_ONE": 1, "ARCA_TWO": 2}) >>> settings.get("one") 1 >>> settings.get("one", "...

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def Dump(self, key = None): """ Using the standard Python pretty printer, return the contents of the scons build environment as a string. If the key passed in is anything other than None, then that will be used as an index into the build environment dictionary and whatev...

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def _render_child_fragment(self, child, context, view='student_view'): """ Helper method to overcome html block rendering quirks """ try: child_fragment = child.render(view, context) except NoSuchViewError: if child.scope_ids.block_type == 'html' and getat...

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48.2

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def _matches_patterns(path, patterns): """Given a list of patterns, returns a if a path matches any pattern.""" for glob in patterns: try: if PurePath(path).match(glob): return True except TypeError: pass return False

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34.333333

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def close_application(self): """Closes the current application and also close webdriver session.""" self._debug('Closing application with session id %s' % self._current_application().session_id) self._cache.close()

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59.5

21.75

def plot_reaction_scheme(df, temperature, pressure, potential, pH, e_lim=None): """Returns a matplotlib object with the plotted reaction path. Parameters ---------- df : Pandas DataFrame generated by reaction_network temperature : numeric temperature in K pressure : numeric press...

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def authenticate(self): """ Handles authentication, and persists the X-APPLE-WEB-KB cookie so that subsequent logins will not cause additional e-mails from Apple. """ logger.info("Authenticating as %s", self.user['apple_id']) data = dict(self.user) # We authent...

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33.138889

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def _post_json(self, url, data, **kw): ''' Makes a POST request, setting Authorization and Content-Type headers by default ''' data = json.dumps(data) headers = kw.pop('headers', {}) headers.setdefault('Content-Type', 'application/json') headers.setdefault...

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33.384615

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def get_Cpt_params(A, Cnodes, AggOp, T): """Return C and F pts. Helper function that returns a dictionary of sparse matrices and arrays which allow us to easily operate on Cpts and Fpts separately. Parameters ---------- A : {csr_matrix, bsr_matrix} Operator Cnodes : {array} ...

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35.054422

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def set_location(self, time, latitude, longitude): ''' Sets the location for the query. Parameters ---------- time: datetime or DatetimeIndex Time range of the query. ''' if isinstance(time, datetime.datetime): tzinfo = time.tzinfo ...

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28.166667

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def pdf_to_text(pdf_filepath='', **kwargs): """ Parse pdf to a list of strings using the pdfminer lib. Args: no_laparams=False, all_texts=None, detect_vertical=None, word_margin=None, char_margin=None, line_margin=None, boxes_flow=None, codec='utf-8', strip_control=F...

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35.216216

21.810811

def find_by_uuid(self, si, uuid, is_vm=True, path=None, data_center=None): """ Finds vm/host by his uuid in the vCenter or returns "None" :param si: pyvmomi 'ServiceInstance' :param uuid: the object uuid :param path: the path to find the object ('dc' or 'dc/f...

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41.333333

24.333333

def balance(ctx): """ Show Zebra balance. Like the hours balance, vacation left, etc. """ backend = plugins_registry.get_backends_by_class(ZebraBackend)[0] timesheet_collection = get_timesheet_collection_for_context(ctx, None) hours_to_be_pushed = timesheet_collection.get_hours(pushed=Fals...

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42.8

28.48

def _compute_C_matrix(self): """See Fouss et al. (2006) and von Luxburg et al. (2007). This is the commute-time matrix. It's a squared-euclidian distance matrix in :math:`\\mathbb{R}^n`. """ self.C = np.repeat(np.diag(self.Lp)[:, np.newaxis], self.Lp.s...

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43.15

13.45

def _is_match(self, response, answer): """For MC, can call through to MultiChoice Item Record?""" # TODO: this varies depending on question type if self._only_generic_right_feedback(): return str(answer.genus_type) == str(RIGHT_ANSWER_GENUS) elif self._is_multiple_choice(): ...

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56.642857

19.5

def parsemail(raw_message): """Parse message headers, then remove BCC header.""" message = email.parser.Parser().parsestr(raw_message) # Detect encoding detected = chardet.detect(bytearray(raw_message, "utf-8")) encoding = detected["encoding"] print(">>> encoding {}".format(encoding)) for p...

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36.913043

16.391304

def add_source_root(self, path, langs=tuple(), category=SourceRootCategories.UNKNOWN): """Add the specified fixed source root, which must be relative to the buildroot. Useful in a limited set of circumstances, e.g., when unpacking sources from a jar with unknown structure. Tests should prefer to use dirs ...

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57.125

25.75

def gist(cls, gistid): """gistid must be in a username/id form""" url = "https://gist.github.com/{}.js".format(gistid) script = "<script src=\"{}\"></script>".format(url) return script

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42.4

15.2

def convertToDatetime(fmt="%Y-%m-%dT%H:%M:%S.%f"): """Helper to create a parse action for converting parsed datetime string to Python datetime.datetime Params - - fmt - format to be passed to datetime.strptime (default= ``"%Y-%m-%dT%H:%M:%S.%f"``) Example:: dt_exp...

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34.130435

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def write_new_expr_id(self, search_group, search, lars_id, instruments, gps_start_time, gps_end_time, comments = None): """ Creates a new def_id for the given arguments and returns it. If an entry already exists with these, will just return that id. @search_group: string representing the search group (e.g., c...

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37.625

22.875