kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def show_guiref(self): """Show qtconsole help""" from qtconsole.usage import gui_reference self.main.help.show_rich_text(gui_reference, collapse=True)	[ "def", "show_guiref", "(", "self", ")", ":", "from", "qtconsole", ".", "usage", "import", "gui_reference", "self", ".", "main", ".", "help", ".", "show_rich_text", "(", "gui_reference", ",", "collapse", "=", "True", ")" ]	43.5	13.5
def nearly_unique(arr, rel_tol=1e-4, verbose=0): '''Heuristic method to return the uniques within some precision in a numpy array''' results = np.array([arr[0]]) for x in arr: if np.abs(results - x).min() > rel_tol: results = np.append(results, x) return results	[ "def", "nearly_unique", "(", "arr", ",", "rel_tol", "=", "1e-4", ",", "verbose", "=", "0", ")", ":", "results", "=", "np", ".", "array", "(", "[", "arr", "[", "0", "]", "]", ")", "for", "x", "in", "arr", ":", "if", "np", ".", "abs", "(", "res...	41.714286	16.857143
def format(self, record): ''' Format the log record to include exc_info if the handler is enabled for a specific log level ''' formatted_record = super(ExcInfoOnLogLevelFormatMixIn, self).format(record) exc_info_on_loglevel = getattr(record, 'exc_info_on_loglevel', None) ...	[ "def", "format", "(", "self", ",", "record", ")", ":", "formatted_record", "=", "super", "(", "ExcInfoOnLogLevelFormatMixIn", ",", "self", ")", ".", "format", "(", "record", ")", "exc_info_on_loglevel", "=", "getattr", "(", "record", ",", "'exc_info_on_loglevel'...	54.134615	29.711538
async def sendPhoto(self, chat_id, photo, caption=None, parse_mode=None, disable_notification=None, reply_to_message_id=None, reply_markup=None): """ See: https://core.telegram.org/bot...	[ "async", "def", "sendPhoto", "(", "self", ",", "chat_id", ",", "photo", ",", "caption", "=", "None", ",", "parse_mode", "=", "None", ",", "disable_notification", "=", "None", ",", "reply_to_message_id", "=", "None", ",", "reply_markup", "=", "None", ")", "...	46.684211	16.263158
def apply2parser(cmd_proxy, parser): """ Apply a CmdProxy's arguments and options to a parser of argparse. :type cmd_proxy: callable or CmdProxy :type parser: cmdtree.parser.AParser :rtype: cmdtree.parser.AParser """ if isinstance(cmd_proxy, CmdProxy): parser_proxy = cmd_proxy.me...	[ "def", "apply2parser", "(", "cmd_proxy", ",", "parser", ")", ":", "if", "isinstance", "(", "cmd_proxy", ",", "CmdProxy", ")", ":", "parser_proxy", "=", "cmd_proxy", ".", "meta", ".", "parser", "_apply2parser", "(", "parser_proxy", ".", "arguments", ",", "par...	28.4375	8.5625
def parse_query(query_str): """ Drives the whole logic, by parsing, restructuring and finally, generating an ElasticSearch query. Args: query_str (six.text_types): the given query to be translated to an ElasticSearch query Returns: six.text_types: Return an ElasticSearch query. No...	[ "def", "parse_query", "(", "query_str", ")", ":", "def", "_generate_match_all_fields_query", "(", ")", ":", "# Strip colon character (special character for ES)", "stripped_query_str", "=", "' '", ".", "join", "(", "query_str", ".", "replace", "(", "':'", ",", "' '", ...	39.027778	28.805556
def labels_to_indices(self, labels: Sequence[str]) -> List[int]: """ Converts a sequence of labels into their corresponding indices.""" return [self.LABEL_TO_INDEX[label] for label in labels]	[ "def", "labels_to_indices", "(", "self", ",", "labels", ":", "Sequence", "[", "str", "]", ")", "->", "List", "[", "int", "]", ":", "return", "[", "self", ".", "LABEL_TO_INDEX", "[", "label", "]", "for", "label", "in", "labels", "]" ]	51.25	21.75
def filter_uuid_list(stmts_in, uuids, **kwargs): """Filter to Statements corresponding to given UUIDs Parameters ---------- stmts_in : list[indra.statements.Statement] A list of statements to filter. uuids : list[str] A list of UUIDs to filter for. save : Optional[str] T...	[ "def", "filter_uuid_list", "(", "stmts_in", ",", "uuids", ",", "", "", "kwargs", ")", ":", "invert", "=", "kwargs", ".", "get", "(", "'invert'", ",", "False", ")", "logger", ".", "info", "(", "'Filtering %d statements for %d UUID%s...'", "%", "(", "len", ...	31.72973	17.27027
def on_notify_load_status(self, webkitView, args, *kwargs): """Callback function when the page was loaded completely FYI, this function will be called after $(document).ready() in jQuery """ status = webkitView.get_load_status() if status == status.FINISHED: ...	[ "def", "on_notify_load_status", "(", "self", ",", "webkitView", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "status", "=", "webkitView", ".", "get_load_status", "(", ")", "if", "status", "==", "status", ".", "FINISHED", ":", "if", "self", ".", ...	41.444444	9.777778
def _aside_from_xml(self, node, block_def_id, block_usage_id, id_generator): """ Create an aside from the xml and attach it to the given block """ id_generator = id_generator or self.id_generator aside_type = node.tag aside_class = self.load_aside_type(aside_type) ...	[ "def", "_aside_from_xml", "(", "self", ",", "node", ",", "block_def_id", ",", "block_usage_id", ",", "id_generator", ")", ":", "id_generator", "=", "id_generator", "or", "self", ".", "id_generator", "aside_type", "=", "node", ".", "tag", "aside_class", "=", "s...	47.666667	24.333333
def create(self, chat_id=None, name=None, owner=None, user_list=None): """ 创建群聊会话详情请参考 https://work.weixin.qq.com/api/doc#90000/90135/90245 限制说明：只允许企业自建应用调用，且应用的可见范围必须是根部门；群成员人数不可超过管理端配置的“群成员人数上限”，且最大不可超过500人；每企业创建群数不可超过1000/天； :param chat_i...	[ "def", "create", "(", "self", ",", "chat_id", "=", "None", ",", "name", "=", "None", ",", "owner", "=", "None", ",", "user_list", "=", "None", ")", ":", "data", "=", "optionaldict", "(", "chatid", "=", "chat_id", ",", "name", "=", "name", ",", "own...	30.72	19.36
def hello(environ, start_response): '''The WSGI_ application handler which returns an iterable over the "Hello World!" message.''' if environ['REQUEST_METHOD'] == 'GET': data = b'Hello World!\n' status = '200 OK' response_headers = [ ('Content-type', 'text/plain'), ...	[ "def", "hello", "(", "environ", ",", "start_response", ")", ":", "if", "environ", "[", "'REQUEST_METHOD'", "]", "==", "'GET'", ":", "data", "=", "b'Hello World!\\n'", "status", "=", "'200 OK'", "response_headers", "=", "[", "(", "'Content-type'", ",", "'text/p...	33.928571	11.928571
def getQueryParams(url): """Get URL query parameters.""" query = urlsplit(url)[3] out.debug(u'Extracting query parameters from %r (%r)...' % (url, query)) return cgi.parse_qs(query)	[ "def", "getQueryParams", "(", "url", ")", ":", "query", "=", "urlsplit", "(", "url", ")", "[", "3", "]", "out", ".", "debug", "(", "u'Extracting query parameters from %r (%r)...'", "%", "(", "url", ",", "query", ")", ")", "return", "cgi", ".", "parse_qs", ...	38.6	14.8
def paginate_results(self, results, options): "Return a django.core.paginator.Page of results." limit = options.get('limit', settings.SELECTABLE_MAX_LIMIT) paginator = Paginator(results, limit) page = options.get('page', 1) try: results = paginator.page(page) ...	[ "def", "paginate_results", "(", "self", ",", "results", ",", "options", ")", ":", "limit", "=", "options", ".", "get", "(", "'limit'", ",", "settings", ".", "SELECTABLE_MAX_LIMIT", ")", "paginator", "=", "Paginator", "(", "results", ",", "limit", ")", "pag...	42.4	12.2
def to_json(self): """ Returns a json string containing all relevant data to recreate this pyalveo.Client. """ data = dict(self.__dict__) data.pop('context',None) data['oauth'] = self.oauth.to_dict() data['cache'] = self.cache.to_dict() return json.dum...	[ "def", "to_json", "(", "self", ")", ":", "data", "=", "dict", "(", "self", ".", "__dict__", ")", "data", ".", "pop", "(", "'context'", ",", "None", ")", "data", "[", "'oauth'", "]", "=", "self", ".", "oauth", ".", "to_dict", "(", ")", "data", "["...	35.555556	12
def _connect(self): """Connect to the server.""" assert get_thread_ident() == self.ioloop_thread_id if self._stream: self._logger.warn('Disconnecting existing connection to {0!r} ' 'to create a new connection') self._disconnect() ...	[ "def", "_connect", "(", "self", ")", ":", "assert", "get_thread_ident", "(", ")", "==", "self", ".", "ioloop_thread_id", "if", "self", ".", "_stream", ":", "self", ".", "_logger", ".", "warn", "(", "'Disconnecting existing connection to {0!r} '", "'to create a new...	46.689655	20.310345
def set_schema(self, schema_name, include_public=True): """ Main API method to current database schema, but it does not actually modify the db connection. """ self.tenant = FakeTenant(schema_name=schema_name) self.schema_name = schema_name self.include_public_sche...	[ "def", "set_schema", "(", "self", ",", "schema_name", ",", "include_public", "=", "True", ")", ":", "self", ".", "tenant", "=", "FakeTenant", "(", "schema_name", "=", "schema_name", ")", "self", ".", "schema_name", "=", "schema_name", "self", ".", "include_p...	52.555556	16.666667
async def takewhile(source, func): """Forward an asynchronous sequence while a condition is met. The given function takes the item as an argument and returns a boolean corresponding to the condition to meet. The function can either be synchronous or asynchronous. """ iscorofunc = asyncio.iscoro...	[ "async", "def", "takewhile", "(", "source", ",", "func", ")", ":", "iscorofunc", "=", "asyncio", ".", "iscoroutinefunction", "(", "func", ")", "async", "with", "streamcontext", "(", "source", ")", "as", "streamer", ":", "async", "for", "item", "in", "strea...	36.25	13.625
def init_discrete_hmm_spectral(C_full, nstates, reversible=True, stationary=True, active_set=None, P=None, eps_A=None, eps_B=None, separate=None): """Initializes discrete HMM using spectral clustering of observation counts Initializes HMM as described in [1]_. First estimates a M...	[ "def", "init_discrete_hmm_spectral", "(", "C_full", ",", "nstates", ",", "reversible", "=", "True", ",", "stationary", "=", "True", ",", "active_set", "=", "None", ",", "P", "=", "None", ",", "eps_A", "=", "None", ",", "eps_B", "=", "None", ",", "separat...	42.668605	24.540698
def _format_evidence_text(stmt): """Returns evidence metadata with highlighted evidence text. Parameters ---------- stmt : indra.Statement The Statement with Evidence to be formatted. Returns ------- list of dicts List of dictionaries cor...	[ "def", "_format_evidence_text", "(", "stmt", ")", ":", "def", "get_role", "(", "ag_ix", ")", ":", "if", "isinstance", "(", "stmt", ",", "Complex", ")", "or", "isinstance", "(", "stmt", ",", "SelfModification", ")", "or", "isinstance", "(", "stmt", ",", "...	43.8	18
def set_secure_boot_mode(self, secure_boot_enable): """Enable/Disable secure boot on the server. :param secure_boot_enable: True, if secure boot needs to be enabled for next boot, else False. :raises: IloError, on an error from iLO. :raises: IloCommandNotSupportedError, i...	[ "def", "set_secure_boot_mode", "(", "self", ",", "secure_boot_enable", ")", ":", "if", "self", ".", "_is_boot_mode_uefi", "(", ")", ":", "self", ".", "_change_secure_boot_settings", "(", "'SecureBootEnable'", ",", "secure_boot_enable", ")", "else", ":", "msg", "="...	47.3125	18.25
def _bias_scale(x, b, data_format): """The multiplication counter part of tf.nn.bias_add.""" if data_format == 'NHWC': return x * b elif data_format == 'NCHW': return x * _to_channel_first_bias(b) else: raise ValueError('invalid data_format: %s' % data_format)	[ "def", "_bias_scale", "(", "x", ",", "b", ",", "data_format", ")", ":", "if", "data_format", "==", "'NHWC'", ":", "return", "x", "", "b", "elif", "data_format", "==", "'NCHW'", ":", "return", "x", "", "_to_channel_first_bias", "(", "b", ")", "else", ...	36.625	13.125
def hicpro_mapping_chart (self): """ Generate the HiC-Pro Aligned reads plot """ # Specify the order of the different possible categories keys = OrderedDict() keys['Full_Alignments_Read'] = { 'color': '#005ce6', 'name': 'Full reads Alignments' } keys['Trimmed_Alignments_Read']...	[ "def", "hicpro_mapping_chart", "(", "self", ")", ":", "# Specify the order of the different possible categories", "keys", "=", "OrderedDict", "(", ")", "keys", "[", "'Full_Alignments_Read'", "]", "=", "{", "'color'", ":", "'#005ce6'", ",", "'name'", ":", "'Full reads ...	46.806452	26.387097
def send_keys(self, value, **kwargs): self.debug_log("Sending keys") highlight = kwargs.get( 'highlight', BROME_CONFIG['highlight']['highlight_when_element_receive_keys'] # noqa ) """ wait_until_clickable = kwargs.get( 'wait_until_clickable',...	[ "def", "send_keys", "(", "self", ",", "value", ",", "", "", "kwargs", ")", ":", "self", ".", "debug_log", "(", "\"Sending keys\"", ")", "highlight", "=", "kwargs", ".", "get", "(", "'highlight'", ",", "BROME_CONFIG", "[", "'highlight'", "]", "[", "'hig...	30.509091	19.090909
def select(self, table, columns=None, join=None, where=None, group=None, having=None, order=None, limit=None, iterator=False, fetch=True): """ :type table: string :type columns: list :type join: dict :param join: {'[>]table1(t1)': {'user.id': 't1.user_id'}} -> "LEF...	[ "def", "select", "(", "self", ",", "table", ",", "columns", "=", "None", ",", "join", "=", "None", ",", "where", "=", "None", ",", "group", "=", "None", ",", "having", "=", "None", ",", "order", "=", "None", ",", "limit", "=", "None", ",", "itera...	39.918367	24.081633
def svm_predict(y, x, m, options=""): """ svm_predict(y, x, m [, options]) -> (p_labels, p_acc, p_vals) y: a list/tuple/ndarray of l true labels (type must be int/double). It is used for calculating the accuracy. Use [] if true labels are unavailable. x: 1. a list/tuple of l training instances. Feature ve...	[ "def", "svm_predict", "(", "y", ",", "x", ",", "m", ",", "options", "=", "\"\"", ")", ":", "def", "info", "(", "s", ")", ":", "print", "(", "s", ")", "if", "scipy", "and", "isinstance", "(", "x", ",", "scipy", ".", "ndarray", ")", ":", "x", "...	35.327869	23.688525
def build_image_in_privileged_container(build_image, source, image, parent_registry=None, target_registries=None, push_buildroot_to=None, parent_registry_insecure=False, target_registries_insecure=Fal...	[ "def", "build_image_in_privileged_container", "(", "build_image", ",", "source", ",", "image", ",", "parent_registry", "=", "None", ",", "target_registries", "=", "None", ",", "push_buildroot_to", "=", "None", ",", "parent_registry_insecure", "=", "False", ",", "tar...	58.258065	30.064516
def get_help_msg(self, dotspace_ending=False, # type: bool **kwargs): # type: (...) -> str """ The method used to get the formatted help message according to kwargs. By default it returns the 'help_msg' attribute, whether it is defined at the in...	[ "def", "get_help_msg", "(", "self", ",", "dotspace_ending", "=", "False", ",", "# type: bool", "", "", "kwargs", ")", ":", "# type: (...) -> str", "context", "=", "self", ".", "get_context_for_help_msgs", "(", "kwargs", ")", "if", "self", ".", "help_msg", "i...	42.717391	24.108696
def doTranslate(option, urlOrPaths, serverEndpoint=ServerEndpoint, verbose=Verbose, tikaServerJar=TikaServerJar, responseMimeType='text/plain', services={'all': '/translate/all'}): ''' Translate the file from source language to destination language. :param option: :param...	[ "def", "doTranslate", "(", "option", ",", "urlOrPaths", ",", "serverEndpoint", "=", "ServerEndpoint", ",", "verbose", "=", "Verbose", ",", "tikaServerJar", "=", "TikaServerJar", ",", "responseMimeType", "=", "'text/plain'", ",", "services", "=", "{", "'all'", ":...	37.117647	24.647059
def set_range_y(self,val): """ Set visible range of y data. Note: Padding must be 0 or it will create an infinite loop """ d = self.declaration if d.auto_range[1]: return self.widget.setYRange(*val,padding=0)	[ "def", "set_range_y", "(", "self", ",", "val", ")", ":", "d", "=", "self", ".", "declaration", "if", "d", ".", "auto_range", "[", "1", "]", ":", "return", "self", ".", "widget", ".", "setYRange", "(", "*", "val", ",", "padding", "=", "0", ")" ]	27.8	15.6
def generate_output(self, writer): """ Generates the sitemap file and the stylesheet file and puts them into the content dir. :param writer: the writer instance :type writer: pelican.writers.Writer """ # write xml stylesheet with codecs_open(os.path.join(os.path.d...	[ "def", "generate_output", "(", "self", ",", "writer", ")", ":", "# write xml stylesheet", "with", "codecs_open", "(", "os", ".", "path", ".", "join", "(", "os", ".", "path", ".", "dirname", "(", "__file__", ")", ",", "'sitemap-stylesheet.xsl'", ")", ",", "...	42.712871	24.49505
def parseEC2Json2List(jsontext, region): """ Takes a JSON and returns a list of InstanceType objects representing EC2 instance params. :param jsontext: :param region: :return: """ currentList = json.loads(jsontext) ec2InstanceList = [] for k, v in iteritems(currentList["products"]):...	[ "def", "parseEC2Json2List", "(", "jsontext", ",", "region", ")", ":", "currentList", "=", "json", ".", "loads", "(", "jsontext", ")", "ec2InstanceList", "=", "[", "]", "for", "k", ",", "v", "in", "iteritems", "(", "currentList", "[", "\"products\"", "]", ...	55.885714	26.971429
def register_entity(self, entity_value, entity_type, alias_of=None, domain=0): """ Register an entity to be tagged in potential parse results. Args: entity_value(str): the value/proper name of an entity instance (Ex: "The Big Bang Theory") entity_type(str...	[ "def", "register_entity", "(", "self", ",", "entity_value", ",", "entity_type", ",", "alias_of", "=", "None", ",", "domain", "=", "0", ")", ":", "if", "domain", "not", "in", "self", ".", "domains", ":", "self", ".", "register_domain", "(", "domain", "=",...	50.666667	23.733333
def write_byte(self, cmd, value): """ Writes an 8-bit byte to the specified command register """ self.bus.write_byte_data(self.address, cmd, value) self.log.debug( "write_byte: Wrote 0x%02X to command register 0x%02X" % ( value, cmd ) ...	[ "def", "write_byte", "(", "self", ",", "cmd", ",", "value", ")", ":", "self", ".", "bus", ".", "write_byte_data", "(", "self", ".", "address", ",", "cmd", ",", "value", ")", "self", ".", "log", ".", "debug", "(", "\"write_byte: Wrote 0x%02X to command regi...	31.5	16.5
def plot_ellipse_matplotlib(cov, pos, ax, nstd=2, **kwargs): """ Plot 2d ellipse in 3d using matplotlib backend """ from matplotlib.patches import Ellipse from mpl_toolkits.mplot3d import art3d, Axes3D ellipse_param, normal = calc_2d_ellipse_properties(cov,nstd) ellipse_kwds = merge_keywords...	[ "def", "plot_ellipse_matplotlib", "(", "cov", ",", "pos", ",", "ax", ",", "nstd", "=", "2", ",", "", "", "kwargs", ")", ":", "from", "matplotlib", ".", "patches", "import", "Ellipse", "from", "mpl_toolkits", ".", "mplot3d", "import", "art3d", ",", "Axe...	36.714286	13
def quaternion_rotate(X, Y): """ Calculate the rotation Parameters ---------- X : array (N,D) matrix, where N is points and D is dimension. Y: array (N,D) matrix, where N is points and D is dimension. Returns ------- rot : matrix Rotation matrix (D,D) ""...	[ "def", "quaternion_rotate", "(", "X", ",", "Y", ")", ":", "N", "=", "X", ".", "shape", "[", "0", "]", "W", "=", "np", ".", "asarray", "(", "[", "makeW", "(", "*", "Y", "[", "k", "]", ")", "for", "k", "in", "range", "(", "N", ")", "]", ")"...	26.923077	18.846154
def createRecordSensor(network, name, dataSource): """ Creates a RecordSensor region that allows us to specify a file record stream as the input source. """ # Specific type of region. Possible options can be found in /nupic/regions/ regionType = "py.RecordSensor" # Creates a json from specified dictiona...	[ "def", "createRecordSensor", "(", "network", ",", "name", ",", "dataSource", ")", ":", "# Specific type of region. Possible options can be found in /nupic/regions/", "regionType", "=", "\"py.RecordSensor\"", "# Creates a json from specified dictionary.", "regionParams", "=", "json"...	34.84	20.04
def init_localization(): '''prepare l10n''' locale.setlocale(locale.LC_ALL, '') # User's preferred locale, according to environment # Use first two characters of country code, defaulting to 'en' in the absence of a preference loc = locale.getlocale() lang = loc[0][0:2] if loc[0] else 'en' filen...	[ "def", "init_localization", "(", ")", ":", "locale", ".", "setlocale", "(", "locale", ".", "LC_ALL", ",", "''", ")", "# User's preferred locale, according to environment", "# Use first two characters of country code, defaulting to 'en' in the absence of a preference", "loc", "=",...	38.058824	26.294118
def delete_record_set(self, record_set): """Append a record set to the 'deletions' for the change set. :type record_set: :class:`google.cloud.dns.resource_record_set.ResourceRecordSet` :param record_set: the record set to append. :raises: ``ValueError`` if ``record_set`` is...	[ "def", "delete_record_set", "(", "self", ",", "record_set", ")", ":", "if", "not", "isinstance", "(", "record_set", ",", "ResourceRecordSet", ")", ":", "raise", "ValueError", "(", "\"Pass a ResourceRecordSet\"", ")", "self", ".", "_deletions", "+=", "(", "record...	41.916667	17.75
def list(cls, params=None): """ Retrieves a list of the model :param params: params as dictionary :type params: dict :return: the list of the parsed xml objects :rtype: list """ return fields.ListField(name=cls.ENDPOINT, init_class=cls).decode( ...	[ "def", "list", "(", "cls", ",", "params", "=", "None", ")", ":", "return", "fields", ".", "ListField", "(", "name", "=", "cls", ".", "ENDPOINT", ",", "init_class", "=", "cls", ")", ".", "decode", "(", "cls", ".", "element_from_string", "(", "cls", "....	31.833333	16.833333
def handle(self, env, start_response): """WSGI entry point for auth requests (ones that match the self.auth_prefix). Wraps env in swob.Request object and passes it down. :param env: WSGI environment dictionary :param start_response: WSGI callable """ try: ...	[ "def", "handle", "(", "self", ",", "env", ",", "start_response", ")", ":", "try", ":", "req", "=", "Request", "(", "env", ")", "if", "self", ".", "auth_prefix", ":", "req", ".", "path_info_pop", "(", ")", "req", ".", "bytes_transferred", "=", "'-'", ...	46.470588	14.794118
def or_fault(a, b, out, fault): """Returns True if OR(a, b) == out and fault == 0 or OR(a, b) != out and fault == 1.""" if (a or b) == out: return fault == 0 else: return fault == 1	[ "def", "or_fault", "(", "a", ",", "b", ",", "out", ",", "fault", ")", ":", "if", "(", "a", "or", "b", ")", "==", "out", ":", "return", "fault", "==", "0", "else", ":", "return", "fault", "==", "1" ]	34	14.5
def guess_payload_class(self, payload): """ Handles NTPv4 extensions and MAC part (when authentication is used.) """ plen = len(payload) if plen > _NTP_AUTH_MD5_TAIL_SIZE: return NTPExtensions elif plen == _NTP_AUTH_MD5_TAIL_SIZE: return NTPAuthen...	[ "def", "guess_payload_class", "(", "self", ",", "payload", ")", ":", "plen", "=", "len", "(", "payload", ")", "if", "plen", ">", "_NTP_AUTH_MD5_TAIL_SIZE", ":", "return", "NTPExtensions", "elif", "plen", "==", "_NTP_AUTH_MD5_TAIL_SIZE", ":", "return", "NTPAuthen...	31.166667	13.833333
def gpio_interrupts_enable(self): """Enables GPIO interrupts.""" try: bring_gpio_interrupt_into_userspace() set_gpio_interrupt_edge() except Timeout as e: raise InterruptEnableException( "There was an error bringing gpio%d into userspace. %s" %...	[ "def", "gpio_interrupts_enable", "(", "self", ")", ":", "try", ":", "bring_gpio_interrupt_into_userspace", "(", ")", "set_gpio_interrupt_edge", "(", ")", "except", "Timeout", "as", "e", ":", "raise", "InterruptEnableException", "(", "\"There was an error bringing gpio%d i...	37.3	12.9
def utcnow(cls): """Return a new datetime representing UTC day and time.""" obj = datetime.datetime.utcnow() obj = cls(obj, tzinfo=pytz.utc) return obj	[ "def", "utcnow", "(", "cls", ")", ":", "obj", "=", "datetime", ".", "datetime", ".", "utcnow", "(", ")", "obj", "=", "cls", "(", "obj", ",", "tzinfo", "=", "pytz", ".", "utc", ")", "return", "obj" ]	32.6	11.8
def view_hmap(token, dstore): """ Display the highest 20 points of the mean hazard map. Called as $ oq show hmap:0.1 # 10% PoE """ try: poe = valid.probability(token.split(':')[1]) except IndexError: poe = 0.1 mean = dict(extract(dstore, 'hcurves?kind=mean'))['mean'] oq ...	[ "def", "view_hmap", "(", "token", ",", "dstore", ")", ":", "try", ":", "poe", "=", "valid", ".", "probability", "(", "token", ".", "split", "(", "':'", ")", "[", "1", "]", ")", "except", "IndexError", ":", "poe", "=", "0.1", "mean", "=", "dict", ...	35.944444	13.277778
def _derive_namespaces(self): ''' Small method to loop through three graphs in self.diffs, identify unique namespace URIs. Then, loop through provided dictionary of prefixes and pin one to another. Args: None: uses self.prefixes and self.diffs Returns: None: sets self.update_namespaces and self.updat...	[ "def", "_derive_namespaces", "(", "self", ")", ":", "# iterate through graphs and get unique namespace uris", "for", "graph", "in", "[", "self", ".", "diffs", ".", "overlap", ",", "self", ".", "diffs", ".", "removed", ",", "self", ".", "diffs", ".", "added", "...	36.457143	24.914286
def all_connected_components(i,j): '''Associate each label in i with a component # This function finds all connected components given an array of associations between labels i and j using a depth-first search. i & j give the edges of the graph. The first step of the algorithm makes bidirec...	[ "def", "all_connected_components", "(", "i", ",", "j", ")", ":", "if", "len", "(", "i", ")", "==", "0", ":", "return", "i", "i1", "=", "np", ".", "hstack", "(", "(", "i", ",", "j", ")", ")", "j1", "=", "np", ".", "hstack", "(", "(", "j", ",...	38.419355	23.83871
def get_help(command): """ Get the Cmd help function from the click command :param command: The click Command object :return: the help_* method for Cmd :rtype: function """ assert isinstance(command, click.Command) def help_(self): # pylint: disable=unused-argument extra = {} ...	[ "def", "get_help", "(", "command", ")", ":", "assert", "isinstance", "(", "command", ",", "click", ".", "Command", ")", "def", "help_", "(", "self", ")", ":", "# pylint: disable=unused-argument", "extra", "=", "{", "}", "for", "key", ",", "value", "in", ...	32.285714	16.761905
def _pyxb_from_perm_dict(self, perm_dict): """Return an AccessPolicy PyXB representation of ``perm_dict`` - If ``norm_perm_list`` is empty, None is returned. The schema does not allow AccessPolicy to be empty, but in SystemMetadata, it can be left out altogether. So returning None inste...	[ "def", "_pyxb_from_perm_dict", "(", "self", ",", "perm_dict", ")", ":", "norm_perm_list", "=", "self", ".", "_norm_perm_list_from_perm_dict", "(", "perm_dict", ")", "return", "self", ".", "_pyxb_from_norm_perm_list", "(", "norm_perm_list", ")" ]	51.727273	26.181818
def load_facts(self, facts): """Load a set of facts into the CLIPS data base. The C equivalent of the CLIPS load-facts command. Facts can be loaded from a string or from a text file. """ facts = facts.encode() if os.path.exists(facts): ret = lib.EnvLoadFac...	[ "def", "load_facts", "(", "self", ",", "facts", ")", ":", "facts", "=", "facts", ".", "encode", "(", ")", "if", "os", ".", "path", ".", "exists", "(", "facts", ")", ":", "ret", "=", "lib", ".", "EnvLoadFacts", "(", "self", ".", "_env", ",", "fact...	28.1	19.55
def humanize_dates(p_due=None, p_start=None, p_creation=None): """ Returns string with humanized versions of p_due, p_start and p_creation. Examples: - all dates: "16 days ago, due in a month, started 2 days ago" - p_due and p_start: "due in a month, started 2 days ago" - p_creation and p_due: "...	[ "def", "humanize_dates", "(", "p_due", "=", "None", ",", "p_start", "=", "None", ",", "p_creation", "=", "None", ")", ":", "dates_list", "=", "[", "]", "if", "p_creation", ":", "dates_list", ".", "append", "(", "humanize_date", "(", "p_creation", ")", ")...	34.52381	18.047619
def get_short_uid_dict(self, query=None): """Create a dictionary of shortend UIDs for all contacts. All arguments are only used if the address book is not yet initialized and will just be handed to self.load(). :param query: see self.load() :type query: str :returns: th...	[ "def", "get_short_uid_dict", "(", "self", ",", "query", "=", "None", ")", ":", "if", "self", ".", "_short_uids", "is", "None", ":", "if", "not", "self", ".", "_loaded", ":", "self", ".", "load", "(", "query", ")", "if", "not", "self", ".", "contacts"...	46.621622	16.405405
def set_framebuffer_size_callback(window, cbfun): """ Sets the framebuffer resize callback for the specified window. Wrapper for: GLFWframebuffersizefun glfwSetFramebufferSizeCallback(GLFWwindow* window, GLFWframebuffersizefun cbfun); """ window_addr = ctypes.cast(ctypes.pointer(window), ...	[ "def", "set_framebuffer_size_callback", "(", "window", ",", "cbfun", ")", ":", "window_addr", "=", "ctypes", ".", "cast", "(", "ctypes", ".", "pointer", "(", "window", ")", ",", "ctypes", ".", "POINTER", "(", "ctypes", ".", "c_long", ")", ")", ".", "cont...	42.619048	22.047619
def from_series(cls, series, offset=0): """ Creates and return a Series from a Series :param series: raccoon Series :param offset: offset value must be provided as there is no equivalent for a DataFrame :return: Series """ return cls(data=series.data, index=serie...	[ "def", "from_series", "(", "cls", ",", "series", ",", "offset", "=", "0", ")", ":", "return", "cls", "(", "data", "=", "series", ".", "data", ",", "index", "=", "series", ".", "index", ",", "data_name", "=", "series", ".", "data_name", ",", "index_na...	42.9	20.9
def parse_data_writer(self, node): """ Parses <DataWriter> @param node: Node containing the <DataWriter> element @type node: xml.etree.Element """ if 'path' in node.lattrib: path = node.lattrib['path'] else: self.raise_error('<DataWriter>...	[ "def", "parse_data_writer", "(", "self", ",", "node", ")", ":", "if", "'path'", "in", "node", ".", "lattrib", ":", "path", "=", "node", ".", "lattrib", "[", "'path'", "]", "else", ":", "self", ".", "raise_error", "(", "'<DataWriter> must specify a path.'", ...	30.95	18.95
def setup_logging(self, defaults=None): """ Set up logging via :func:`logging.config.fileConfig`. Defaults are specified for the special ``__file__`` and ``here`` variables, similar to PasteDeploy config loading. Extra defaults can optionally be specified as a dict in ``defaults...	[ "def", "setup_logging", "(", "self", ",", "defaults", "=", "None", ")", ":", "if", "\"loggers\"", "in", "self", ".", "get_sections", "(", ")", ":", "defaults", "=", "self", ".", "_get_defaults", "(", "defaults", ")", "fileConfig", "(", "self", ".", "uri"...	36.315789	21.368421
def init_app(self, app, entry_point_group='invenio_oauth2server.scopes', **kwargs): """Flask application initialization. :param app: An instance of :class:`flask.Flask`. :param entry_point_group: The entrypoint group name to load plugins. (Default: ``'invenio_oauth2...	[ "def", "init_app", "(", "self", ",", "app", ",", "entry_point_group", "=", "'invenio_oauth2server.scopes'", ",", "", "", "kwargs", ")", ":", "self", ".", "init_config", "(", "app", ")", "state", "=", "_OAuth2ServerState", "(", "app", ",", "entry_point_group"...	37.214286	22.428571
def Enter(self, n = 1, dl = 0): """回车键/换行键n次 """ self.Delay(dl) self.keyboard.tap_key(self.keyboard.enter_key, n)	[ "def", "Enter", "(", "self", ",", "n", "=", "1", ",", "dl", "=", "0", ")", ":", "self", ".", "Delay", "(", "dl", ")", "self", ".", "keyboard", ".", "tap_key", "(", "self", ".", "keyboard", ".", "enter_key", ",", "n", ")" ]	28.2	8.8
def gen_elem_array(size, elem_type=None): """ Generates element array of given size and initializes with given type. Supports container type, used for pre-allocation before deserialization. :param size: :param elem_type: :return: """ if elem_type is None or not callable(elem_type): ...	[ "def", "gen_elem_array", "(", "size", ",", "elem_type", "=", "None", ")", ":", "if", "elem_type", "is", "None", "or", "not", "callable", "(", "elem_type", ")", ":", "return", "[", "elem_type", "]", "*", "size", "if", "is_type", "(", "elem_type", ",", "...	26.684211	18.684211
def BFS(G, start): """ Algorithm for breadth-first searching the vertices of a graph. """ if start not in G.vertices: raise GraphInsertError("Vertex %s doesn't exist." % (start,)) color = {} pred = {} dist = {} queue = Queue() queue.put(start) for vertex in G.v...	[ "def", "BFS", "(", "G", ",", "start", ")", ":", "if", "start", "not", "in", "G", ".", "vertices", ":", "raise", "GraphInsertError", "(", "\"Vertex %s doesn't exist.\"", "%", "(", "start", ",", ")", ")", "color", "=", "{", "}", "pred", "=", "{", "}", ...	30.68	13
def get_host(name): """ Prints the public dns name of `name`, if it exists. :param name: The instance name. :type name: ``str`` """ f = {'instance-state-name': 'running', 'tag:Name': name} ec2 = boto.connect_ec2(region=get_region()) rs = ec2.get_all_instances(filters=f) if len(rs) =...	[ "def", "get_host", "(", "name", ")", ":", "f", "=", "{", "'instance-state-name'", ":", "'running'", ",", "'tag:Name'", ":", "name", "}", "ec2", "=", "boto", ".", "connect_ec2", "(", "region", "=", "get_region", "(", ")", ")", "rs", "=", "ec2", ".", "...	31.692308	12.615385
def get_login_failed_count(name): ''' Get the the number of failed login attempts :param str name: The username of the account :return: The number of failed login attempts :rtype: int :raises: CommandExecutionError on user not found or any other unknown error CLI Example: .. code-bl...	[ "def", "get_login_failed_count", "(", "name", ")", ":", "ret", "=", "_get_account_policy_data_value", "(", "name", ",", "'failedLoginCount'", ")", "return", "salt", ".", "utils", ".", "mac_utils", ".", "parse_return", "(", "ret", ")" ]	24.55	26.35
def _generate_div_id_chart(prefix="chart_id", digits=8): """Generate a random id for div chart. """ choices = (random.randrange(0, 52) for _ in range(digits)) return prefix + "".join((string.ascii_letters[x] for x in choices))	[ "def", "_generate_div_id_chart", "(", "prefix", "=", "\"chart_id\"", ",", "digits", "=", "8", ")", ":", "choices", "=", "(", "random", ".", "randrange", "(", "0", ",", "52", ")", "for", "_", "in", "range", "(", "digits", ")", ")", "return", "prefix", ...	47.6	13.8
def add_spectrum(self, label, spectrum, color=None): """ Adds a Spectrum for plotting. Args: label (str): Label for the Spectrum. Must be unique. spectrum: Spectrum object color (str): This is passed on to matplotlib. E.g., "k--" indicates a d...	[ "def", "add_spectrum", "(", "self", ",", "label", ",", "spectrum", ",", "color", "=", "None", ")", ":", "self", ".", "_spectra", "[", "label", "]", "=", "spectrum", "self", ".", "colors", ".", "append", "(", "color", "or", "self", ".", "colors_cycle", ...	38.8	16.933333
def rfc2822_format(val): """ Takes either a date, a datetime, or a string, and returns a string that represents the value in RFC 2822 format. If a string is passed it is returned unchanged. """ if isinstance(val, six.string_types): return val elif isinstance(val, (datetime.datetime, ...	[ "def", "rfc2822_format", "(", "val", ")", ":", "if", "isinstance", "(", "val", ",", "six", ".", "string_types", ")", ":", "return", "val", "elif", "isinstance", "(", "val", ",", "(", "datetime", ".", "datetime", ",", "datetime", ".", "date", ")", ")", ...	32.75	14.75
def repair_broken_bonds(self, slab, bonds): """ This method will find undercoordinated atoms due to slab cleaving specified by the bonds parameter and move them to the other surface to make sure the bond is kept intact. In a future release of surface.py, the ghost_sites will be ...	[ "def", "repair_broken_bonds", "(", "self", ",", "slab", ",", "bonds", ")", ":", "for", "pair", "in", "bonds", ".", "keys", "(", ")", ":", "blength", "=", "bonds", "[", "pair", "]", "# First lets determine which element should be the", "# reference (center element)...	46.042254	22.492958
def insert_strain_option_group_multi_ifo(parser): """ Adds the options used to call the pycbc.strain.from_cli function to an optparser as an OptionGroup. This should be used if you want to use these options in your code. Parameters ----------- parser : object OptionParser instance. ...	[ "def", "insert_strain_option_group_multi_ifo", "(", "parser", ")", ":", "data_reading_group_multi", "=", "parser", ".", "add_argument_group", "(", "\"Options for obtaining\"", "\" h(t)\"", ",", "\"These options are used for generating h(t) either by \"", "\"reading from a file or by ...	56.48	27.234286
def data_filler_detailed_registration(self, number_of_rows, pipe): '''creates keys with detailed regis. information ''' try: for i in range(number_of_rows): pipe.hmset('detailed_registration:%s' % i, { 'id': rnd_id_generator(self), ...	[ "def", "data_filler_detailed_registration", "(", "self", ",", "number_of_rows", ",", "pipe", ")", ":", "try", ":", "for", "i", "in", "range", "(", "number_of_rows", ")", ":", "pipe", ".", "hmset", "(", "'detailed_registration:%s'", "%", "i", ",", "{", "'id'"...	41.9	20.6
def database( state, host, name, # Desired database settings present=True, collate=None, charset=None, user=None, user_hostname='localhost', user_privileges='ALL', # Details for speaking to MySQL via `mysql` CLI mysql_user=None, mysql_password=None, mysql_host=None, mysql_port=None, ): ...	[ "def", "database", "(", "state", ",", "host", ",", "name", ",", "# Desired database settings", "present", "=", "True", ",", "collate", "=", "None", ",", "charset", "=", "None", ",", "user", "=", "None", ",", "user_hostname", "=", "'localhost'", ",", "user_...	30.71831	18.830986
def exactly_equal(self, other): ''' Comparison between VariantCollection instances that takes into account the info field of Variant instances. Returns ---------- True if the variants in this collection equal the variants in the other collection. The Variant.info...	[ "def", "exactly_equal", "(", "self", ",", "other", ")", ":", "return", "(", "self", ".", "__class__", "==", "other", ".", "__class__", "and", "len", "(", "self", ")", "==", "len", "(", "other", ")", "and", "all", "(", "x", ".", "exactly_equal", "(", ...	38.071429	23.642857
def delete_shard(self, project_name, logstore_name, shardId): """ delete a readonly shard Unsuccessful opertaion will cause an LogException. :type project_name: string :param project_name: the Project name :type logstore_name: string :param logstore_name: the ...	[ "def", "delete_shard", "(", "self", ",", "project_name", ",", "logstore_name", ",", "shardId", ")", ":", "headers", "=", "{", "}", "params", "=", "{", "}", "resource", "=", "\"/logstores/\"", "+", "logstore_name", "+", "\"/shards/\"", "+", "str", "(", "sha...	34.272727	18.954545
def license_present(name): ''' Ensures that the specified PowerPath license key is present on the host. name The license key to ensure is present ''' ret = {'name': name, 'changes': {}, 'result': False, 'comment': ''} if not __salt__['powerpath.has_...	[ "def", "license_present", "(", "name", ")", ":", "ret", "=", "{", "'name'", ":", "name", ",", "'changes'", ":", "{", "}", ",", "'result'", ":", "False", ",", "'comment'", ":", "''", "}", "if", "not", "__salt__", "[", "'powerpath.has_powerpath'", "]", "...	26.775	21.075
def _add_tasks(config, tasks_file, tasks_type, priority, redundancy): """Add tasks to a project.""" try: project = find_project_by_short_name(config.project['short_name'], config.pbclient, config.all) data ...	[ "def", "_add_tasks", "(", "config", ",", "tasks_file", ",", "tasks_type", ",", "priority", ",", "redundancy", ")", ":", "try", ":", "project", "=", "find_project_by_short_name", "(", "config", ".", "project", "[", "'short_name'", "]", ",", "config", ".", "pb...	49.794118	19.588235
def next(self): """Return a column one by one :raises: StopIteration """ if self._cur_col >= len(self._rec): self._cur_col = 0 raise StopIteration col = self._rec[self._cur_col] self._cur_col += 1 return col	[ "def", "next", "(", "self", ")", ":", "if", "self", ".", "_cur_col", ">=", "len", "(", "self", ".", "_rec", ")", ":", "self", ".", "_cur_col", "=", "0", "raise", "StopIteration", "col", "=", "self", ".", "_rec", "[", "self", ".", "_cur_col", "]", ...	25.272727	12.363636
def valUserCert(self, byts, cacerts=None): ''' Validate the PEM encoded x509 user certificate bytes and return it. Args: byts (bytes): The bytes for the User Certificate. cacerts (tuple): A tuple of OpenSSL.crypto.X509 CA Certificates. Raises: OpenSS...	[ "def", "valUserCert", "(", "self", ",", "byts", ",", "cacerts", "=", "None", ")", ":", "cert", "=", "crypto", ".", "load_certificate", "(", "crypto", ".", "FILETYPE_PEM", ",", "byts", ")", "if", "cacerts", "is", "None", ":", "cacerts", "=", "self", "."...	32.269231	27.269231
def process_ndex_neighborhood(gene_names, network_id=None, rdf_out='bel_output.rdf', print_output=True): """Return a BelRdfProcessor for an NDEx network neighborhood. Parameters ---------- gene_names : list A list of HGNC gene symbols to search the neighborhood of....	[ "def", "process_ndex_neighborhood", "(", "gene_names", ",", "network_id", "=", "None", ",", "rdf_out", "=", "'bel_output.rdf'", ",", "print_output", "=", "True", ")", ":", "logger", ".", "warning", "(", "'This method is deprecated and the results are not '", "'guarantee...	38.403846	22.057692
def delete_user_from_group(self, GroupID, UserID): """Delete a user from a group.""" # http://teampasswordmanager.com/docs/api-groups/#del_user log.info('Delete user %s from group %s' % (UserID, GroupID)) self.put('groups/%s/delete_user/%s.json' % (GroupID, UserID))	[ "def", "delete_user_from_group", "(", "self", ",", "GroupID", ",", "UserID", ")", ":", "# http://teampasswordmanager.com/docs/api-groups/#del_user", "log", ".", "info", "(", "'Delete user %s from group %s'", "%", "(", "UserID", ",", "GroupID", ")", ")", "self", ".", ...	58.8	18.6
def simplex_iterator(scale, boundary=True): """ Systematically iterates through a lattice of points on the 2-simplex. Parameters ---------- scale: Int The normalized scale of the simplex, i.e. N such that points (x,y,z) satisify x + y + z == N boundary: bool, True Inclu...	[ "def", "simplex_iterator", "(", "scale", ",", "boundary", "=", "True", ")", ":", "start", "=", "0", "if", "not", "boundary", ":", "start", "=", "1", "for", "i", "in", "range", "(", "start", ",", "scale", "+", "(", "1", "-", "start", ")", ")", ":"...	27.407407	21.703704
def is_bare_exception(self, node): """ Checks if the node is a bare exception name from an except block. """ return isinstance(node, Name) and node.id in self.current_except_names	[ "def", "is_bare_exception", "(", "self", ",", "node", ")", ":", "return", "isinstance", "(", "node", ",", "Name", ")", "and", "node", ".", "id", "in", "self", ".", "current_except_names" ]	34.5	19.5
def summary(self): """Summary by packages and dependencies """ print("\nStatus summary") print("=" * 79) print("{0}found {1} dependencies in {2} packages.{3}\n".format( self.grey, self.count_dep, self.count_pkg, self.endc))	[ "def", "summary", "(", "self", ")", ":", "print", "(", "\"\\nStatus summary\"", ")", "print", "(", "\"=\"", "*", "79", ")", "print", "(", "\"{0}found {1} dependencies in {2} packages.{3}\\n\"", ".", "format", "(", "self", ".", "grey", ",", "self", ".", "count_...	38.428571	14.714286
def get_chunk(self,x,z): """ Return a chunk specified by the chunk coordinates x,z. Raise InconceivedChunk if the chunk is not yet generated. To get the raw NBT data, use get_nbt. """ return self.chunkclass(self.get_nbt(x, z))	[ "def", "get_chunk", "(", "self", ",", "x", ",", "z", ")", ":", "return", "self", ".", "chunkclass", "(", "self", ".", "get_nbt", "(", "x", ",", "z", ")", ")" ]	43.5	18.5
def save(self, path): """Save the specification of this MLPipeline in a JSON file. The content of the JSON file is the dict returned by the `to_dict` method. Args: path (str): Path to the JSON file to write. """ with open(path, 'w') as out_file: json.dum...	[ "def", "save", "(", "self", ",", "path", ")", ":", "with", "open", "(", "path", ",", "'w'", ")", "as", "out_file", ":", "json", ".", "dump", "(", "self", ".", "to_dict", "(", ")", ",", "out_file", ",", "indent", "=", "4", ")" ]	34.8	20.1
def get_template_sources(self, template_name, template_dirs=None): """ Return the absolute paths to "template_name" in the specified app If the name does not contain an app name (no colon), an empty list is returned. The parent FilesystemLoader.load_template_source() will take ca...	[ "def", "get_template_sources", "(", "self", ",", "template_name", ",", "template_dirs", "=", "None", ")", ":", "if", "':'", "not", "in", "template_name", ":", "return", "[", "]", "app_name", ",", "template_name", "=", "template_name", ".", "split", "(", "\":...	43.333333	18.533333
def docker_fabric(args, *kwargs): """ :param args: Positional arguments to Docker client. :param kwargs: Keyword arguments to Docker client. :return: Docker client. :rtype: dockerfabric.apiclient.DockerFabricClient \| dockerfabric.cli.DockerCliClient """ ci = kwargs.get('client_implementati...	[ "def", "docker_fabric", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "ci", "=", "kwargs", ".", "get", "(", "'client_implementation'", ")", "or", "env", ".", "get", "(", "'docker_fabric_implementation'", ")", "or", "CLIENT_API", "if", "ci", "==", ...	43.538462	16
def indexed_sum_over_const(cls, ops, kwargs): r'''Execute an indexed sum over a term that does not depend on the summation indices .. math:: \sum_{j=1}^{N} a = N a >>> a = symbols('a') >>> i, j = (IdxSym(s) for s in ('i', 'j')) >>> unicode(Sum(i, 1, 2)(a)) '2 a' >>> unicode(S...	[ "def", "indexed_sum_over_const", "(", "cls", ",", "ops", ",", "kwargs", ")", ":", "term", ",", "", "*", "ranges", "=", "ops", "new_ranges", "=", "[", "]", "new_term", "=", "term", "for", "r", "in", "ranges", ":", "if", "r", ".", "index_symbol", "not"...	25.933333	19.266667
def data_and_labels(self): """ Dataset features and labels in a matrix form for learning. Also returns sample_ids in the same order. Returns ------- data_matrix : ndarray 2D array of shape [num_samples, num_features] with features corresponding r...	[ "def", "data_and_labels", "(", "self", ")", ":", "sample_ids", "=", "np", ".", "array", "(", "self", ".", "keys", ")", "label_dict", "=", "self", ".", "labels", "matrix", "=", "np", ".", "full", "(", "[", "self", ".", "num_samples", ",", "self", ".",...	33.185185	19.333333
def write(self, message): """ (coroutine) Write a single message into the pipe. """ if self.done_f.done(): raise BrokenPipeError try: yield From(write_message_to_pipe(self.pipe_instance.pipe_handle, message)) except BrokenPipeError: ...	[ "def", "write", "(", "self", ",", "message", ")", ":", "if", "self", ".", "done_f", ".", "done", "(", ")", ":", "raise", "BrokenPipeError", "try", ":", "yield", "From", "(", "write_message_to_pipe", "(", "self", ".", "pipe_instance", ".", "pipe_handle", ...	27.692308	15.692308
def is_job_complete(job_id, conn=None): """ is_job_done function checks to if Brain.Jobs Status is Completed Completed is defined in statics as Done\|Stopped\|Error :param job_id: <str> id for the job :param conn: (optional)<connection> to run on :return: <dict> if job is done <false> if """...	[ "def", "is_job_complete", "(", "job_id", ",", "conn", "=", "None", ")", ":", "result", "=", "False", "job", "=", "RBJ", ".", "get", "(", "job_id", ")", ".", "run", "(", "conn", ")", "if", "job", "and", "job", ".", "get", "(", "STATUS_FIELD", ")", ...	30.066667	14.733333
def _createTimeSeriesObjects(self, timeSeries, filename): """ Create GSSHAPY TimeSeries and TimeSeriesValue Objects Method """ try: # Determine number of value columns valColumns = len(timeSeries[0]['values']) # Create List of GSSHAPY TimeSeries objec...	[ "def", "_createTimeSeriesObjects", "(", "self", ",", "timeSeries", ",", "filename", ")", ":", "try", ":", "# Determine number of value columns", "valColumns", "=", "len", "(", "timeSeries", "[", "0", "]", "[", "'values'", "]", ")", "# Create List of GSSHAPY TimeSeri...	40.071429	19.571429
def _get_index(self): """ Get the guideline's index. This must return an ``int``. Subclasses may override this method. """ glyph = self.glyph if glyph is not None: parent = glyph else: parent = self.font if parent is None: ...	[ "def", "_get_index", "(", "self", ")", ":", "glyph", "=", "self", ".", "glyph", "if", "glyph", "is", "not", "None", ":", "parent", "=", "glyph", "else", ":", "parent", "=", "self", ".", "font", "if", "parent", "is", "None", ":", "return", "None", "...	24.933333	12.266667
def build_global(self, global_node): """parse `global` section, and return the config.Global Args: global_node (TreeNode): `global` section treenode Returns: config.Global: an object """ config_block_lines = self.__build_config_block( globa...	[ "def", "build_global", "(", "self", ",", "global_node", ")", ":", "config_block_lines", "=", "self", ".", "__build_config_block", "(", "global_node", ".", "config_block", ")", "return", "config", ".", "Global", "(", "config_block", "=", "config_block_lines", ")" ]	30	18.461538
def BytesDecoder(field_number, is_repeated, is_packed, key, new_default): """Returns a decoder for a bytes field.""" local_DecodeVarint = _DecodeVarint assert not is_packed if is_repeated: tag_bytes = encoder.TagBytes(field_number, wire_format.WIRETYPE_LENGTH_DELIMITED) ...	[ "def", "BytesDecoder", "(", "field_number", ",", "is_repeated", ",", "is_packed", ",", "key", ",", "new_default", ")", ":", "local_DecodeVarint", "=", "_DecodeVarint", "assert", "not", "is_packed", "if", "is_repeated", ":", "tag_bytes", "=", "encoder", ".", "Tag...	37.057143	17.057143
def data_request(self, payload, timeout=TIMEOUT): """Perform a data_request and return the result.""" request_url = self.base_url + "/data_request" return requests.get(request_url, timeout=timeout, params=payload)	[ "def", "data_request", "(", "self", ",", "payload", ",", "timeout", "=", "TIMEOUT", ")", ":", "request_url", "=", "self", ".", "base_url", "+", "\"/data_request\"", "return", "requests", ".", "get", "(", "request_url", ",", "timeout", "=", "timeout", ",", ...	58.5	13.75
def map(self, callable): """ Apply 'callable' function over all values. """ for k,v in self.iteritems(): self[k] = callable(v)	[ "def", "map", "(", "self", ",", "callable", ")", ":", "for", "k", ",", "v", "in", "self", ".", "iteritems", "(", ")", ":", "self", "[", "k", "]", "=", "callable", "(", "v", ")" ]	37.75	6.75
def p_static_scalar_unary_op(p): '''static_scalar : PLUS static_scalar \| MINUS static_scalar''' p[0] = ast.UnaryOp(p[1], p[2], lineno=p.lineno(1))	[ "def", "p_static_scalar_unary_op", "(", "p", ")", ":", "p", "[", "0", "]", "=", "ast", ".", "UnaryOp", "(", "p", "[", "1", "]", ",", "p", "[", "2", "]", ",", "lineno", "=", "p", ".", "lineno", "(", "1", ")", ")" ]	43	7
def getResponse(self, context=""): """ Poll for finished block or first byte ACK. Args: context (str): internal serial call context. Returns: string: Response, implict cast from byte array. """ waits = 0 # allowed interval counter response_str = ...	[ "def", "getResponse", "(", "self", ",", "context", "=", "\"\"", ")", ":", "waits", "=", "0", "# allowed interval counter", "response_str", "=", "\"\"", "# returned bytes in string default", "try", ":", "waits", "=", "0", "# allowed interval counter", "while", "(", ...	40.625	17.78125
def close(self): """ Mark the latch as closed, and cause every sleeping thread to be woken, with :class:`mitogen.core.LatchError` raised in each thread. """ self._lock.acquire() try: self.closed = True while self._waking < len(self._sleeping): ...	[ "def", "close", "(", "self", ")", ":", "self", ".", "_lock", ".", "acquire", "(", ")", "try", ":", "self", ".", "closed", "=", "True", "while", "self", ".", "_waking", "<", "len", "(", "self", ".", "_sleeping", ")", ":", "wsock", ",", "cookie", "...	34.928571	15.214286
def build_distribution(): """Build distributions of the code.""" result = invoke.run('python setup.py sdist bdist_egg bdist_wheel', warn=True, hide=True) if result.ok: print("[{}GOOD{}] Distribution built without errors." .format(GOOD_COLOR, RESET_COLOR)) el...	[ "def", "build_distribution", "(", ")", ":", "result", "=", "invoke", ".", "run", "(", "'python setup.py sdist bdist_egg bdist_wheel'", ",", "warn", "=", "True", ",", "hide", "=", "True", ")", "if", "result", ".", "ok", ":", "print", "(", "\"[{}GOOD{}] Distribu...	40.583333	17.416667
def generate_unique_key(master_key_path, url): """ Input1: Path to the BD2K Master Key (for S3 Encryption) Input2: S3 URL (e.g. https://s3-us-west-2.amazonaws.com/cgl-driver-projects-encrypted/wcdt/exome_bams/DTB-111-N.bam) Returns: 32-byte unique key generated for that URL """ with open(master...	[ "def", "generate_unique_key", "(", "master_key_path", ",", "url", ")", ":", "with", "open", "(", "master_key_path", ",", "'r'", ")", "as", "f", ":", "master_key", "=", "f", ".", "read", "(", ")", "assert", "len", "(", "master_key", ")", "==", "32", ","...	49.785714	24.928571

def show_guiref(self): """Show qtconsole help""" from qtconsole.usage import gui_reference self.main.help.show_rich_text(gui_reference, collapse=True)

[ "def", "show_guiref", "(", "self", ")", ":", "from", "qtconsole", ".", "usage", "import", "gui_reference", "self", ".", "main", ".", "help", ".", "show_rich_text", "(", "gui_reference", ",", "collapse", "=", "True", ")" ]

43.5

13.5

def nearly_unique(arr, rel_tol=1e-4, verbose=0): '''Heuristic method to return the uniques within some precision in a numpy array''' results = np.array([arr[0]]) for x in arr: if np.abs(results - x).min() > rel_tol: results = np.append(results, x) return results

[ "def", "nearly_unique", "(", "arr", ",", "rel_tol", "=", "1e-4", ",", "verbose", "=", "0", ")", ":", "results", "=", "np", ".", "array", "(", "[", "arr", "[", "0", "]", "]", ")", "for", "x", "in", "arr", ":", "if", "np", ".", "abs", "(", "res...

41.714286

16.857143

def format(self, record): ''' Format the log record to include exc_info if the handler is enabled for a specific log level ''' formatted_record = super(ExcInfoOnLogLevelFormatMixIn, self).format(record) exc_info_on_loglevel = getattr(record, 'exc_info_on_loglevel', None) ...

[ "def", "format", "(", "self", ",", "record", ")", ":", "formatted_record", "=", "super", "(", "ExcInfoOnLogLevelFormatMixIn", ",", "self", ")", ".", "format", "(", "record", ")", "exc_info_on_loglevel", "=", "getattr", "(", "record", ",", "'exc_info_on_loglevel'...

54.134615

29.711538

async def sendPhoto(self, chat_id, photo, caption=None, parse_mode=None, disable_notification=None, reply_to_message_id=None, reply_markup=None): """ See: https://core.telegram.org/bot...

[ "async", "def", "sendPhoto", "(", "self", ",", "chat_id", ",", "photo", ",", "caption", "=", "None", ",", "parse_mode", "=", "None", ",", "disable_notification", "=", "None", ",", "reply_to_message_id", "=", "None", ",", "reply_markup", "=", "None", ")", "...

46.684211

16.263158

def apply2parser(cmd_proxy, parser): """ Apply a CmdProxy's arguments and options to a parser of argparse. :type cmd_proxy: callable or CmdProxy :type parser: cmdtree.parser.AParser :rtype: cmdtree.parser.AParser """ if isinstance(cmd_proxy, CmdProxy): parser_proxy = cmd_proxy.me...

[ "def", "apply2parser", "(", "cmd_proxy", ",", "parser", ")", ":", "if", "isinstance", "(", "cmd_proxy", ",", "CmdProxy", ")", ":", "parser_proxy", "=", "cmd_proxy", ".", "meta", ".", "parser", "_apply2parser", "(", "parser_proxy", ".", "arguments", ",", "par...

28.4375

8.5625

def parse_query(query_str): """ Drives the whole logic, by parsing, restructuring and finally, generating an ElasticSearch query. Args: query_str (six.text_types): the given query to be translated to an ElasticSearch query Returns: six.text_types: Return an ElasticSearch query. No...

[ "def", "parse_query", "(", "query_str", ")", ":", "def", "_generate_match_all_fields_query", "(", ")", ":", "# Strip colon character (special character for ES)", "stripped_query_str", "=", "' '", ".", "join", "(", "query_str", ".", "replace", "(", "':'", ",", "' '", ...

39.027778

28.805556

def labels_to_indices(self, labels: Sequence[str]) -> List[int]: """ Converts a sequence of labels into their corresponding indices.""" return [self.LABEL_TO_INDEX[label] for label in labels]

[ "def", "labels_to_indices", "(", "self", ",", "labels", ":", "Sequence", "[", "str", "]", ")", "->", "List", "[", "int", "]", ":", "return", "[", "self", ".", "LABEL_TO_INDEX", "[", "label", "]", "for", "label", "in", "labels", "]" ]

51.25

21.75

def filter_uuid_list(stmts_in, uuids, **kwargs): """Filter to Statements corresponding to given UUIDs Parameters ---------- stmts_in : list[indra.statements.Statement] A list of statements to filter. uuids : list[str] A list of UUIDs to filter for. save : Optional[str] T...

[ "def", "filter_uuid_list", "(", "stmts_in", ",", "uuids", ",", "*", "*", "kwargs", ")", ":", "invert", "=", "kwargs", ".", "get", "(", "'invert'", ",", "False", ")", "logger", ".", "info", "(", "'Filtering %d statements for %d UUID%s...'", "%", "(", "len", ...

31.72973

17.27027

def on_notify_load_status(self, webkitView, *args, **kwargs): """Callback function when the page was loaded completely FYI, this function will be called after $(document).ready() in jQuery """ status = webkitView.get_load_status() if status == status.FINISHED: ...

[ "def", "on_notify_load_status", "(", "self", ",", "webkitView", ",", "*", "args", ",", "*", "*", "kwargs", ")", ":", "status", "=", "webkitView", ".", "get_load_status", "(", ")", "if", "status", "==", "status", ".", "FINISHED", ":", "if", "self", ".", ...

41.444444

9.777778

def _aside_from_xml(self, node, block_def_id, block_usage_id, id_generator): """ Create an aside from the xml and attach it to the given block """ id_generator = id_generator or self.id_generator aside_type = node.tag aside_class = self.load_aside_type(aside_type) ...

[ "def", "_aside_from_xml", "(", "self", ",", "node", ",", "block_def_id", ",", "block_usage_id", ",", "id_generator", ")", ":", "id_generator", "=", "id_generator", "or", "self", ".", "id_generator", "aside_type", "=", "node", ".", "tag", "aside_class", "=", "s...

47.666667

24.333333

def create(self, chat_id=None, name=None, owner=None, user_list=None): """ 创建群聊会话详情请参考 https://work.weixin.qq.com/api/doc#90000/90135/90245 限制说明：只允许企业自建应用调用，且应用的可见范围必须是根部门；群成员人数不可超过管理端配置的“群成员人数上限”，且最大不可超过500人；每企业创建群数不可超过1000/天； :param chat_i...

[ "def", "create", "(", "self", ",", "chat_id", "=", "None", ",", "name", "=", "None", ",", "owner", "=", "None", ",", "user_list", "=", "None", ")", ":", "data", "=", "optionaldict", "(", "chatid", "=", "chat_id", ",", "name", "=", "name", ",", "own...

30.72

19.36

def hello(environ, start_response): '''The WSGI_ application handler which returns an iterable over the "Hello World!" message.''' if environ['REQUEST_METHOD'] == 'GET': data = b'Hello World!\n' status = '200 OK' response_headers = [ ('Content-type', 'text/plain'), ...

[ "def", "hello", "(", "environ", ",", "start_response", ")", ":", "if", "environ", "[", "'REQUEST_METHOD'", "]", "==", "'GET'", ":", "data", "=", "b'Hello World!\\n'", "status", "=", "'200 OK'", "response_headers", "=", "[", "(", "'Content-type'", ",", "'text/p...

33.928571

11.928571

def getQueryParams(url): """Get URL query parameters.""" query = urlsplit(url)[3] out.debug(u'Extracting query parameters from %r (%r)...' % (url, query)) return cgi.parse_qs(query)

[ "def", "getQueryParams", "(", "url", ")", ":", "query", "=", "urlsplit", "(", "url", ")", "[", "3", "]", "out", ".", "debug", "(", "u'Extracting query parameters from %r (%r)...'", "%", "(", "url", ",", "query", ")", ")", "return", "cgi", ".", "parse_qs", ...

38.6

14.8

def paginate_results(self, results, options): "Return a django.core.paginator.Page of results." limit = options.get('limit', settings.SELECTABLE_MAX_LIMIT) paginator = Paginator(results, limit) page = options.get('page', 1) try: results = paginator.page(page) ...

[ "def", "paginate_results", "(", "self", ",", "results", ",", "options", ")", ":", "limit", "=", "options", ".", "get", "(", "'limit'", ",", "settings", ".", "SELECTABLE_MAX_LIMIT", ")", "paginator", "=", "Paginator", "(", "results", ",", "limit", ")", "pag...

42.4

12.2

def to_json(self): """ Returns a json string containing all relevant data to recreate this pyalveo.Client. """ data = dict(self.__dict__) data.pop('context',None) data['oauth'] = self.oauth.to_dict() data['cache'] = self.cache.to_dict() return json.dum...

[ "def", "to_json", "(", "self", ")", ":", "data", "=", "dict", "(", "self", ".", "__dict__", ")", "data", ".", "pop", "(", "'context'", ",", "None", ")", "data", "[", "'oauth'", "]", "=", "self", ".", "oauth", ".", "to_dict", "(", ")", "data", "["...

35.555556

12

def _connect(self): """Connect to the server.""" assert get_thread_ident() == self.ioloop_thread_id if self._stream: self._logger.warn('Disconnecting existing connection to {0!r} ' 'to create a new connection') self._disconnect() ...

[ "def", "_connect", "(", "self", ")", ":", "assert", "get_thread_ident", "(", ")", "==", "self", ".", "ioloop_thread_id", "if", "self", ".", "_stream", ":", "self", ".", "_logger", ".", "warn", "(", "'Disconnecting existing connection to {0!r} '", "'to create a new...

46.689655

20.310345

def set_schema(self, schema_name, include_public=True): """ Main API method to current database schema, but it does not actually modify the db connection. """ self.tenant = FakeTenant(schema_name=schema_name) self.schema_name = schema_name self.include_public_sche...

[ "def", "set_schema", "(", "self", ",", "schema_name", ",", "include_public", "=", "True", ")", ":", "self", ".", "tenant", "=", "FakeTenant", "(", "schema_name", "=", "schema_name", ")", "self", ".", "schema_name", "=", "schema_name", "self", ".", "include_p...

52.555556

16.666667

async def takewhile(source, func): """Forward an asynchronous sequence while a condition is met. The given function takes the item as an argument and returns a boolean corresponding to the condition to meet. The function can either be synchronous or asynchronous. """ iscorofunc = asyncio.iscoro...

[ "async", "def", "takewhile", "(", "source", ",", "func", ")", ":", "iscorofunc", "=", "asyncio", ".", "iscoroutinefunction", "(", "func", ")", "async", "with", "streamcontext", "(", "source", ")", "as", "streamer", ":", "async", "for", "item", "in", "strea...

36.25

13.625

def init_discrete_hmm_spectral(C_full, nstates, reversible=True, stationary=True, active_set=None, P=None, eps_A=None, eps_B=None, separate=None): """Initializes discrete HMM using spectral clustering of observation counts Initializes HMM as described in [1]_. First estimates a M...

[ "def", "init_discrete_hmm_spectral", "(", "C_full", ",", "nstates", ",", "reversible", "=", "True", ",", "stationary", "=", "True", ",", "active_set", "=", "None", ",", "P", "=", "None", ",", "eps_A", "=", "None", ",", "eps_B", "=", "None", ",", "separat...

42.668605

24.540698

def _format_evidence_text(stmt): """Returns evidence metadata with highlighted evidence text. Parameters ---------- stmt : indra.Statement The Statement with Evidence to be formatted. Returns ------- list of dicts List of dictionaries cor...

[ "def", "_format_evidence_text", "(", "stmt", ")", ":", "def", "get_role", "(", "ag_ix", ")", ":", "if", "isinstance", "(", "stmt", ",", "Complex", ")", "or", "isinstance", "(", "stmt", ",", "SelfModification", ")", "or", "isinstance", "(", "stmt", ",", "...

43.8

18

def set_secure_boot_mode(self, secure_boot_enable): """Enable/Disable secure boot on the server. :param secure_boot_enable: True, if secure boot needs to be enabled for next boot, else False. :raises: IloError, on an error from iLO. :raises: IloCommandNotSupportedError, i...

[ "def", "set_secure_boot_mode", "(", "self", ",", "secure_boot_enable", ")", ":", "if", "self", ".", "_is_boot_mode_uefi", "(", ")", ":", "self", ".", "_change_secure_boot_settings", "(", "'SecureBootEnable'", ",", "secure_boot_enable", ")", "else", ":", "msg", "="...

47.3125

18.25

def _bias_scale(x, b, data_format): """The multiplication counter part of tf.nn.bias_add.""" if data_format == 'NHWC': return x * b elif data_format == 'NCHW': return x * _to_channel_first_bias(b) else: raise ValueError('invalid data_format: %s' % data_format)

[ "def", "_bias_scale", "(", "x", ",", "b", ",", "data_format", ")", ":", "if", "data_format", "==", "'NHWC'", ":", "return", "x", "*", "b", "elif", "data_format", "==", "'NCHW'", ":", "return", "x", "*", "_to_channel_first_bias", "(", "b", ")", "else", ...

36.625

13.125

def hicpro_mapping_chart (self): """ Generate the HiC-Pro Aligned reads plot """ # Specify the order of the different possible categories keys = OrderedDict() keys['Full_Alignments_Read'] = { 'color': '#005ce6', 'name': 'Full reads Alignments' } keys['Trimmed_Alignments_Read']...

[ "def", "hicpro_mapping_chart", "(", "self", ")", ":", "# Specify the order of the different possible categories", "keys", "=", "OrderedDict", "(", ")", "keys", "[", "'Full_Alignments_Read'", "]", "=", "{", "'color'", ":", "'#005ce6'", ",", "'name'", ":", "'Full reads ...

46.806452

26.387097

def send_keys(self, value, **kwargs): self.debug_log("Sending keys") highlight = kwargs.get( 'highlight', BROME_CONFIG['highlight']['highlight_when_element_receive_keys'] # noqa ) """ wait_until_clickable = kwargs.get( 'wait_until_clickable',...

[ "def", "send_keys", "(", "self", ",", "value", ",", "*", "*", "kwargs", ")", ":", "self", ".", "debug_log", "(", "\"Sending keys\"", ")", "highlight", "=", "kwargs", ".", "get", "(", "'highlight'", ",", "BROME_CONFIG", "[", "'highlight'", "]", "[", "'hig...

30.509091

19.090909

def select(self, table, columns=None, join=None, where=None, group=None, having=None, order=None, limit=None, iterator=False, fetch=True): """ :type table: string :type columns: list :type join: dict :param join: {'[>]table1(t1)': {'user.id': 't1.user_id'}} -> "LEF...

[ "def", "select", "(", "self", ",", "table", ",", "columns", "=", "None", ",", "join", "=", "None", ",", "where", "=", "None", ",", "group", "=", "None", ",", "having", "=", "None", ",", "order", "=", "None", ",", "limit", "=", "None", ",", "itera...

39.918367

24.081633

def svm_predict(y, x, m, options=""): """ svm_predict(y, x, m [, options]) -> (p_labels, p_acc, p_vals) y: a list/tuple/ndarray of l true labels (type must be int/double). It is used for calculating the accuracy. Use [] if true labels are unavailable. x: 1. a list/tuple of l training instances. Feature ve...

[ "def", "svm_predict", "(", "y", ",", "x", ",", "m", ",", "options", "=", "\"\"", ")", ":", "def", "info", "(", "s", ")", ":", "print", "(", "s", ")", "if", "scipy", "and", "isinstance", "(", "x", ",", "scipy", ".", "ndarray", ")", ":", "x", "...

35.327869

23.688525

def build_image_in_privileged_container(build_image, source, image, parent_registry=None, target_registries=None, push_buildroot_to=None, parent_registry_insecure=False, target_registries_insecure=Fal...

[ "def", "build_image_in_privileged_container", "(", "build_image", ",", "source", ",", "image", ",", "parent_registry", "=", "None", ",", "target_registries", "=", "None", ",", "push_buildroot_to", "=", "None", ",", "parent_registry_insecure", "=", "False", ",", "tar...

58.258065

30.064516

def get_help_msg(self, dotspace_ending=False, # type: bool **kwargs): # type: (...) -> str """ The method used to get the formatted help message according to kwargs. By default it returns the 'help_msg' attribute, whether it is defined at the in...

[ "def", "get_help_msg", "(", "self", ",", "dotspace_ending", "=", "False", ",", "# type: bool", "*", "*", "kwargs", ")", ":", "# type: (...) -> str", "context", "=", "self", ".", "get_context_for_help_msgs", "(", "kwargs", ")", "if", "self", ".", "help_msg", "i...

42.717391

24.108696

def doTranslate(option, urlOrPaths, serverEndpoint=ServerEndpoint, verbose=Verbose, tikaServerJar=TikaServerJar, responseMimeType='text/plain', services={'all': '/translate/all'}): ''' Translate the file from source language to destination language. :param option: :param...

[ "def", "doTranslate", "(", "option", ",", "urlOrPaths", ",", "serverEndpoint", "=", "ServerEndpoint", ",", "verbose", "=", "Verbose", ",", "tikaServerJar", "=", "TikaServerJar", ",", "responseMimeType", "=", "'text/plain'", ",", "services", "=", "{", "'all'", ":...

37.117647

24.647059

def set_range_y(self,val): """ Set visible range of y data. Note: Padding must be 0 or it will create an infinite loop """ d = self.declaration if d.auto_range[1]: return self.widget.setYRange(*val,padding=0)

[ "def", "set_range_y", "(", "self", ",", "val", ")", ":", "d", "=", "self", ".", "declaration", "if", "d", ".", "auto_range", "[", "1", "]", ":", "return", "self", ".", "widget", ".", "setYRange", "(", "*", "val", ",", "padding", "=", "0", ")" ]

27.8

15.6

def generate_output(self, writer): """ Generates the sitemap file and the stylesheet file and puts them into the content dir. :param writer: the writer instance :type writer: pelican.writers.Writer """ # write xml stylesheet with codecs_open(os.path.join(os.path.d...

[ "def", "generate_output", "(", "self", ",", "writer", ")", ":", "# write xml stylesheet", "with", "codecs_open", "(", "os", ".", "path", ".", "join", "(", "os", ".", "path", ".", "dirname", "(", "__file__", ")", ",", "'sitemap-stylesheet.xsl'", ")", ",", "...

42.712871

24.49505

def parseEC2Json2List(jsontext, region): """ Takes a JSON and returns a list of InstanceType objects representing EC2 instance params. :param jsontext: :param region: :return: """ currentList = json.loads(jsontext) ec2InstanceList = [] for k, v in iteritems(currentList["products"]):...

[ "def", "parseEC2Json2List", "(", "jsontext", ",", "region", ")", ":", "currentList", "=", "json", ".", "loads", "(", "jsontext", ")", "ec2InstanceList", "=", "[", "]", "for", "k", ",", "v", "in", "iteritems", "(", "currentList", "[", "\"products\"", "]", ...

55.885714

26.971429

def register_entity(self, entity_value, entity_type, alias_of=None, domain=0): """ Register an entity to be tagged in potential parse results. Args: entity_value(str): the value/proper name of an entity instance (Ex: "The Big Bang Theory") entity_type(str...

[ "def", "register_entity", "(", "self", ",", "entity_value", ",", "entity_type", ",", "alias_of", "=", "None", ",", "domain", "=", "0", ")", ":", "if", "domain", "not", "in", "self", ".", "domains", ":", "self", ".", "register_domain", "(", "domain", "=",...

50.666667

23.733333

def write_byte(self, cmd, value): """ Writes an 8-bit byte to the specified command register """ self.bus.write_byte_data(self.address, cmd, value) self.log.debug( "write_byte: Wrote 0x%02X to command register 0x%02X" % ( value, cmd ) ...

[ "def", "write_byte", "(", "self", ",", "cmd", ",", "value", ")", ":", "self", ".", "bus", ".", "write_byte_data", "(", "self", ".", "address", ",", "cmd", ",", "value", ")", "self", ".", "log", ".", "debug", "(", "\"write_byte: Wrote 0x%02X to command regi...

31.5

16.5

def plot_ellipse_matplotlib(cov, pos, ax, nstd=2, **kwargs): """ Plot 2d ellipse in 3d using matplotlib backend """ from matplotlib.patches import Ellipse from mpl_toolkits.mplot3d import art3d, Axes3D ellipse_param, normal = calc_2d_ellipse_properties(cov,nstd) ellipse_kwds = merge_keywords...

[ "def", "plot_ellipse_matplotlib", "(", "cov", ",", "pos", ",", "ax", ",", "nstd", "=", "2", ",", "*", "*", "kwargs", ")", ":", "from", "matplotlib", ".", "patches", "import", "Ellipse", "from", "mpl_toolkits", ".", "mplot3d", "import", "art3d", ",", "Axe...

36.714286

13

def quaternion_rotate(X, Y): """ Calculate the rotation Parameters ---------- X : array (N,D) matrix, where N is points and D is dimension. Y: array (N,D) matrix, where N is points and D is dimension. Returns ------- rot : matrix Rotation matrix (D,D) ""...

[ "def", "quaternion_rotate", "(", "X", ",", "Y", ")", ":", "N", "=", "X", ".", "shape", "[", "0", "]", "W", "=", "np", ".", "asarray", "(", "[", "makeW", "(", "*", "Y", "[", "k", "]", ")", "for", "k", "in", "range", "(", "N", ")", "]", ")"...

26.923077

18.846154

def createRecordSensor(network, name, dataSource): """ Creates a RecordSensor region that allows us to specify a file record stream as the input source. """ # Specific type of region. Possible options can be found in /nupic/regions/ regionType = "py.RecordSensor" # Creates a json from specified dictiona...

[ "def", "createRecordSensor", "(", "network", ",", "name", ",", "dataSource", ")", ":", "# Specific type of region. Possible options can be found in /nupic/regions/", "regionType", "=", "\"py.RecordSensor\"", "# Creates a json from specified dictionary.", "regionParams", "=", "json"...

34.84

20.04

def init_localization(): '''prepare l10n''' locale.setlocale(locale.LC_ALL, '') # User's preferred locale, according to environment # Use first two characters of country code, defaulting to 'en' in the absence of a preference loc = locale.getlocale() lang = loc[0][0:2] if loc[0] else 'en' filen...

[ "def", "init_localization", "(", ")", ":", "locale", ".", "setlocale", "(", "locale", ".", "LC_ALL", ",", "''", ")", "# User's preferred locale, according to environment", "# Use first two characters of country code, defaulting to 'en' in the absence of a preference", "loc", "=",...

38.058824

26.294118

def delete_record_set(self, record_set): """Append a record set to the 'deletions' for the change set. :type record_set: :class:`google.cloud.dns.resource_record_set.ResourceRecordSet` :param record_set: the record set to append. :raises: ``ValueError`` if ``record_set`` is...

[ "def", "delete_record_set", "(", "self", ",", "record_set", ")", ":", "if", "not", "isinstance", "(", "record_set", ",", "ResourceRecordSet", ")", ":", "raise", "ValueError", "(", "\"Pass a ResourceRecordSet\"", ")", "self", ".", "_deletions", "+=", "(", "record...

41.916667

17.75

def list(cls, params=None): """ Retrieves a list of the model :param params: params as dictionary :type params: dict :return: the list of the parsed xml objects :rtype: list """ return fields.ListField(name=cls.ENDPOINT, init_class=cls).decode( ...

[ "def", "list", "(", "cls", ",", "params", "=", "None", ")", ":", "return", "fields", ".", "ListField", "(", "name", "=", "cls", ".", "ENDPOINT", ",", "init_class", "=", "cls", ")", ".", "decode", "(", "cls", ".", "element_from_string", "(", "cls", "....

31.833333

16.833333

def handle(self, env, start_response): """WSGI entry point for auth requests (ones that match the self.auth_prefix). Wraps env in swob.Request object and passes it down. :param env: WSGI environment dictionary :param start_response: WSGI callable """ try: ...

[ "def", "handle", "(", "self", ",", "env", ",", "start_response", ")", ":", "try", ":", "req", "=", "Request", "(", "env", ")", "if", "self", ".", "auth_prefix", ":", "req", ".", "path_info_pop", "(", ")", "req", ".", "bytes_transferred", "=", "'-'", ...

46.470588

14.794118

def or_fault(a, b, out, fault): """Returns True if OR(a, b) == out and fault == 0 or OR(a, b) != out and fault == 1.""" if (a or b) == out: return fault == 0 else: return fault == 1

[ "def", "or_fault", "(", "a", ",", "b", ",", "out", ",", "fault", ")", ":", "if", "(", "a", "or", "b", ")", "==", "out", ":", "return", "fault", "==", "0", "else", ":", "return", "fault", "==", "1" ]

34

14.5

def guess_payload_class(self, payload): """ Handles NTPv4 extensions and MAC part (when authentication is used.) """ plen = len(payload) if plen > _NTP_AUTH_MD5_TAIL_SIZE: return NTPExtensions elif plen == _NTP_AUTH_MD5_TAIL_SIZE: return NTPAuthen...

[ "def", "guess_payload_class", "(", "self", ",", "payload", ")", ":", "plen", "=", "len", "(", "payload", ")", "if", "plen", ">", "_NTP_AUTH_MD5_TAIL_SIZE", ":", "return", "NTPExtensions", "elif", "plen", "==", "_NTP_AUTH_MD5_TAIL_SIZE", ":", "return", "NTPAuthen...

31.166667

13.833333

def gpio_interrupts_enable(self): """Enables GPIO interrupts.""" try: bring_gpio_interrupt_into_userspace() set_gpio_interrupt_edge() except Timeout as e: raise InterruptEnableException( "There was an error bringing gpio%d into userspace. %s" %...

[ "def", "gpio_interrupts_enable", "(", "self", ")", ":", "try", ":", "bring_gpio_interrupt_into_userspace", "(", ")", "set_gpio_interrupt_edge", "(", ")", "except", "Timeout", "as", "e", ":", "raise", "InterruptEnableException", "(", "\"There was an error bringing gpio%d i...

37.3

12.9

def utcnow(cls): """Return a new datetime representing UTC day and time.""" obj = datetime.datetime.utcnow() obj = cls(obj, tzinfo=pytz.utc) return obj

[ "def", "utcnow", "(", "cls", ")", ":", "obj", "=", "datetime", ".", "datetime", ".", "utcnow", "(", ")", "obj", "=", "cls", "(", "obj", ",", "tzinfo", "=", "pytz", ".", "utc", ")", "return", "obj" ]

32.6

11.8

def view_hmap(token, dstore): """ Display the highest 20 points of the mean hazard map. Called as $ oq show hmap:0.1 # 10% PoE """ try: poe = valid.probability(token.split(':')[1]) except IndexError: poe = 0.1 mean = dict(extract(dstore, 'hcurves?kind=mean'))['mean'] oq ...

[ "def", "view_hmap", "(", "token", ",", "dstore", ")", ":", "try", ":", "poe", "=", "valid", ".", "probability", "(", "token", ".", "split", "(", "':'", ")", "[", "1", "]", ")", "except", "IndexError", ":", "poe", "=", "0.1", "mean", "=", "dict", ...

35.944444

13.277778

def _derive_namespaces(self): ''' Small method to loop through three graphs in self.diffs, identify unique namespace URIs. Then, loop through provided dictionary of prefixes and pin one to another. Args: None: uses self.prefixes and self.diffs Returns: None: sets self.update_namespaces and self.updat...

[ "def", "_derive_namespaces", "(", "self", ")", ":", "# iterate through graphs and get unique namespace uris", "for", "graph", "in", "[", "self", ".", "diffs", ".", "overlap", ",", "self", ".", "diffs", ".", "removed", ",", "self", ".", "diffs", ".", "added", "...

36.457143

24.914286

def all_connected_components(i,j): '''Associate each label in i with a component # This function finds all connected components given an array of associations between labels i and j using a depth-first search. i & j give the edges of the graph. The first step of the algorithm makes bidirec...

[ "def", "all_connected_components", "(", "i", ",", "j", ")", ":", "if", "len", "(", "i", ")", "==", "0", ":", "return", "i", "i1", "=", "np", ".", "hstack", "(", "(", "i", ",", "j", ")", ")", "j1", "=", "np", ".", "hstack", "(", "(", "j", ",...

38.419355

23.83871

def get_help(command): """ Get the Cmd help function from the click command :param command: The click Command object :return: the help_* method for Cmd :rtype: function """ assert isinstance(command, click.Command) def help_(self): # pylint: disable=unused-argument extra = {} ...

[ "def", "get_help", "(", "command", ")", ":", "assert", "isinstance", "(", "command", ",", "click", ".", "Command", ")", "def", "help_", "(", "self", ")", ":", "# pylint: disable=unused-argument", "extra", "=", "{", "}", "for", "key", ",", "value", "in", ...

32.285714

16.761905

def _pyxb_from_perm_dict(self, perm_dict): """Return an AccessPolicy PyXB representation of ``perm_dict`` - If ``norm_perm_list`` is empty, None is returned. The schema does not allow AccessPolicy to be empty, but in SystemMetadata, it can be left out altogether. So returning None inste...

[ "def", "_pyxb_from_perm_dict", "(", "self", ",", "perm_dict", ")", ":", "norm_perm_list", "=", "self", ".", "_norm_perm_list_from_perm_dict", "(", "perm_dict", ")", "return", "self", ".", "_pyxb_from_norm_perm_list", "(", "norm_perm_list", ")" ]

51.727273

26.181818

def load_facts(self, facts): """Load a set of facts into the CLIPS data base. The C equivalent of the CLIPS load-facts command. Facts can be loaded from a string or from a text file. """ facts = facts.encode() if os.path.exists(facts): ret = lib.EnvLoadFac...

[ "def", "load_facts", "(", "self", ",", "facts", ")", ":", "facts", "=", "facts", ".", "encode", "(", ")", "if", "os", ".", "path", ".", "exists", "(", "facts", ")", ":", "ret", "=", "lib", ".", "EnvLoadFacts", "(", "self", ".", "_env", ",", "fact...

28.1

19.55

def humanize_dates(p_due=None, p_start=None, p_creation=None): """ Returns string with humanized versions of p_due, p_start and p_creation. Examples: - all dates: "16 days ago, due in a month, started 2 days ago" - p_due and p_start: "due in a month, started 2 days ago" - p_creation and p_due: "...

[ "def", "humanize_dates", "(", "p_due", "=", "None", ",", "p_start", "=", "None", ",", "p_creation", "=", "None", ")", ":", "dates_list", "=", "[", "]", "if", "p_creation", ":", "dates_list", ".", "append", "(", "humanize_date", "(", "p_creation", ")", ")...

34.52381

18.047619

def get_short_uid_dict(self, query=None): """Create a dictionary of shortend UIDs for all contacts. All arguments are only used if the address book is not yet initialized and will just be handed to self.load(). :param query: see self.load() :type query: str :returns: th...

[ "def", "get_short_uid_dict", "(", "self", ",", "query", "=", "None", ")", ":", "if", "self", ".", "_short_uids", "is", "None", ":", "if", "not", "self", ".", "_loaded", ":", "self", ".", "load", "(", "query", ")", "if", "not", "self", ".", "contacts"...

46.621622

16.405405

def set_framebuffer_size_callback(window, cbfun): """ Sets the framebuffer resize callback for the specified window. Wrapper for: GLFWframebuffersizefun glfwSetFramebufferSizeCallback(GLFWwindow* window, GLFWframebuffersizefun cbfun); """ window_addr = ctypes.cast(ctypes.pointer(window), ...

[ "def", "set_framebuffer_size_callback", "(", "window", ",", "cbfun", ")", ":", "window_addr", "=", "ctypes", ".", "cast", "(", "ctypes", ".", "pointer", "(", "window", ")", ",", "ctypes", ".", "POINTER", "(", "ctypes", ".", "c_long", ")", ")", ".", "cont...

42.619048

22.047619

def from_series(cls, series, offset=0): """ Creates and return a Series from a Series :param series: raccoon Series :param offset: offset value must be provided as there is no equivalent for a DataFrame :return: Series """ return cls(data=series.data, index=serie...

[ "def", "from_series", "(", "cls", ",", "series", ",", "offset", "=", "0", ")", ":", "return", "cls", "(", "data", "=", "series", ".", "data", ",", "index", "=", "series", ".", "index", ",", "data_name", "=", "series", ".", "data_name", ",", "index_na...

42.9

20.9

def parse_data_writer(self, node): """ Parses <DataWriter> @param node: Node containing the <DataWriter> element @type node: xml.etree.Element """ if 'path' in node.lattrib: path = node.lattrib['path'] else: self.raise_error('<DataWriter>...

[ "def", "parse_data_writer", "(", "self", ",", "node", ")", ":", "if", "'path'", "in", "node", ".", "lattrib", ":", "path", "=", "node", ".", "lattrib", "[", "'path'", "]", "else", ":", "self", ".", "raise_error", "(", "'<DataWriter> must specify a path.'", ...

30.95

18.95

def setup_logging(self, defaults=None): """ Set up logging via :func:`logging.config.fileConfig`. Defaults are specified for the special ``__file__`` and ``here`` variables, similar to PasteDeploy config loading. Extra defaults can optionally be specified as a dict in ``defaults...

[ "def", "setup_logging", "(", "self", ",", "defaults", "=", "None", ")", ":", "if", "\"loggers\"", "in", "self", ".", "get_sections", "(", ")", ":", "defaults", "=", "self", ".", "_get_defaults", "(", "defaults", ")", "fileConfig", "(", "self", ".", "uri"...

36.315789

21.368421

def init_app(self, app, entry_point_group='invenio_oauth2server.scopes', **kwargs): """Flask application initialization. :param app: An instance of :class:`flask.Flask`. :param entry_point_group: The entrypoint group name to load plugins. (Default: ``'invenio_oauth2...

[ "def", "init_app", "(", "self", ",", "app", ",", "entry_point_group", "=", "'invenio_oauth2server.scopes'", ",", "*", "*", "kwargs", ")", ":", "self", ".", "init_config", "(", "app", ")", "state", "=", "_OAuth2ServerState", "(", "app", ",", "entry_point_group"...

37.214286

22.428571

def Enter(self, n = 1, dl = 0): """回车键/换行键n次 """ self.Delay(dl) self.keyboard.tap_key(self.keyboard.enter_key, n)

[ "def", "Enter", "(", "self", ",", "n", "=", "1", ",", "dl", "=", "0", ")", ":", "self", ".", "Delay", "(", "dl", ")", "self", ".", "keyboard", ".", "tap_key", "(", "self", ".", "keyboard", ".", "enter_key", ",", "n", ")" ]

28.2

8.8

def gen_elem_array(size, elem_type=None): """ Generates element array of given size and initializes with given type. Supports container type, used for pre-allocation before deserialization. :param size: :param elem_type: :return: """ if elem_type is None or not callable(elem_type): ...

[ "def", "gen_elem_array", "(", "size", ",", "elem_type", "=", "None", ")", ":", "if", "elem_type", "is", "None", "or", "not", "callable", "(", "elem_type", ")", ":", "return", "[", "elem_type", "]", "*", "size", "if", "is_type", "(", "elem_type", ",", "...

26.684211

18.684211

def BFS(G, start): """ Algorithm for breadth-first searching the vertices of a graph. """ if start not in G.vertices: raise GraphInsertError("Vertex %s doesn't exist." % (start,)) color = {} pred = {} dist = {} queue = Queue() queue.put(start) for vertex in G.v...

[ "def", "BFS", "(", "G", ",", "start", ")", ":", "if", "start", "not", "in", "G", ".", "vertices", ":", "raise", "GraphInsertError", "(", "\"Vertex %s doesn't exist.\"", "%", "(", "start", ",", ")", ")", "color", "=", "{", "}", "pred", "=", "{", "}", ...

30.68

13

def get_host(name): """ Prints the public dns name of `name`, if it exists. :param name: The instance name. :type name: ``str`` """ f = {'instance-state-name': 'running', 'tag:Name': name} ec2 = boto.connect_ec2(region=get_region()) rs = ec2.get_all_instances(filters=f) if len(rs) =...

[ "def", "get_host", "(", "name", ")", ":", "f", "=", "{", "'instance-state-name'", ":", "'running'", ",", "'tag:Name'", ":", "name", "}", "ec2", "=", "boto", ".", "connect_ec2", "(", "region", "=", "get_region", "(", ")", ")", "rs", "=", "ec2", ".", "...

31.692308

12.615385

def get_login_failed_count(name): ''' Get the the number of failed login attempts :param str name: The username of the account :return: The number of failed login attempts :rtype: int :raises: CommandExecutionError on user not found or any other unknown error CLI Example: .. code-bl...

[ "def", "get_login_failed_count", "(", "name", ")", ":", "ret", "=", "_get_account_policy_data_value", "(", "name", ",", "'failedLoginCount'", ")", "return", "salt", ".", "utils", ".", "mac_utils", ".", "parse_return", "(", "ret", ")" ]

24.55

26.35

def _generate_div_id_chart(prefix="chart_id", digits=8): """Generate a random id for div chart. """ choices = (random.randrange(0, 52) for _ in range(digits)) return prefix + "".join((string.ascii_letters[x] for x in choices))

[ "def", "_generate_div_id_chart", "(", "prefix", "=", "\"chart_id\"", ",", "digits", "=", "8", ")", ":", "choices", "=", "(", "random", ".", "randrange", "(", "0", ",", "52", ")", "for", "_", "in", "range", "(", "digits", ")", ")", "return", "prefix", ...

47.6

13.8

def add_spectrum(self, label, spectrum, color=None): """ Adds a Spectrum for plotting. Args: label (str): Label for the Spectrum. Must be unique. spectrum: Spectrum object color (str): This is passed on to matplotlib. E.g., "k--" indicates a d...

[ "def", "add_spectrum", "(", "self", ",", "label", ",", "spectrum", ",", "color", "=", "None", ")", ":", "self", ".", "_spectra", "[", "label", "]", "=", "spectrum", "self", ".", "colors", ".", "append", "(", "color", "or", "self", ".", "colors_cycle", ...

38.8

16.933333

def rfc2822_format(val): """ Takes either a date, a datetime, or a string, and returns a string that represents the value in RFC 2822 format. If a string is passed it is returned unchanged. """ if isinstance(val, six.string_types): return val elif isinstance(val, (datetime.datetime, ...

[ "def", "rfc2822_format", "(", "val", ")", ":", "if", "isinstance", "(", "val", ",", "six", ".", "string_types", ")", ":", "return", "val", "elif", "isinstance", "(", "val", ",", "(", "datetime", ".", "datetime", ",", "datetime", ".", "date", ")", ")", ...

32.75

14.75

def repair_broken_bonds(self, slab, bonds): """ This method will find undercoordinated atoms due to slab cleaving specified by the bonds parameter and move them to the other surface to make sure the bond is kept intact. In a future release of surface.py, the ghost_sites will be ...

[ "def", "repair_broken_bonds", "(", "self", ",", "slab", ",", "bonds", ")", ":", "for", "pair", "in", "bonds", ".", "keys", "(", ")", ":", "blength", "=", "bonds", "[", "pair", "]", "# First lets determine which element should be the", "# reference (center element)...

46.042254

22.492958

def insert_strain_option_group_multi_ifo(parser): """ Adds the options used to call the pycbc.strain.from_cli function to an optparser as an OptionGroup. This should be used if you want to use these options in your code. Parameters ----------- parser : object OptionParser instance. ...

[ "def", "insert_strain_option_group_multi_ifo", "(", "parser", ")", ":", "data_reading_group_multi", "=", "parser", ".", "add_argument_group", "(", "\"Options for obtaining\"", "\" h(t)\"", ",", "\"These options are used for generating h(t) either by \"", "\"reading from a file or by ...

56.48

27.234286

def data_filler_detailed_registration(self, number_of_rows, pipe): '''creates keys with detailed regis. information ''' try: for i in range(number_of_rows): pipe.hmset('detailed_registration:%s' % i, { 'id': rnd_id_generator(self), ...

[ "def", "data_filler_detailed_registration", "(", "self", ",", "number_of_rows", ",", "pipe", ")", ":", "try", ":", "for", "i", "in", "range", "(", "number_of_rows", ")", ":", "pipe", ".", "hmset", "(", "'detailed_registration:%s'", "%", "i", ",", "{", "'id'"...

41.9

20.6

def database( state, host, name, # Desired database settings present=True, collate=None, charset=None, user=None, user_hostname='localhost', user_privileges='ALL', # Details for speaking to MySQL via `mysql` CLI mysql_user=None, mysql_password=None, mysql_host=None, mysql_port=None, ): ...

[ "def", "database", "(", "state", ",", "host", ",", "name", ",", "# Desired database settings", "present", "=", "True", ",", "collate", "=", "None", ",", "charset", "=", "None", ",", "user", "=", "None", ",", "user_hostname", "=", "'localhost'", ",", "user_...

30.71831

18.830986

def exactly_equal(self, other): ''' Comparison between VariantCollection instances that takes into account the info field of Variant instances. Returns ---------- True if the variants in this collection equal the variants in the other collection. The Variant.info...

[ "def", "exactly_equal", "(", "self", ",", "other", ")", ":", "return", "(", "self", ".", "__class__", "==", "other", ".", "__class__", "and", "len", "(", "self", ")", "==", "len", "(", "other", ")", "and", "all", "(", "x", ".", "exactly_equal", "(", ...

38.071429

23.642857

def delete_shard(self, project_name, logstore_name, shardId): """ delete a readonly shard Unsuccessful opertaion will cause an LogException. :type project_name: string :param project_name: the Project name :type logstore_name: string :param logstore_name: the ...

[ "def", "delete_shard", "(", "self", ",", "project_name", ",", "logstore_name", ",", "shardId", ")", ":", "headers", "=", "{", "}", "params", "=", "{", "}", "resource", "=", "\"/logstores/\"", "+", "logstore_name", "+", "\"/shards/\"", "+", "str", "(", "sha...

34.272727

18.954545

def license_present(name): ''' Ensures that the specified PowerPath license key is present on the host. name The license key to ensure is present ''' ret = {'name': name, 'changes': {}, 'result': False, 'comment': ''} if not __salt__['powerpath.has_...

[ "def", "license_present", "(", "name", ")", ":", "ret", "=", "{", "'name'", ":", "name", ",", "'changes'", ":", "{", "}", ",", "'result'", ":", "False", ",", "'comment'", ":", "''", "}", "if", "not", "__salt__", "[", "'powerpath.has_powerpath'", "]", "...

26.775

21.075

def _add_tasks(config, tasks_file, tasks_type, priority, redundancy): """Add tasks to a project.""" try: project = find_project_by_short_name(config.project['short_name'], config.pbclient, config.all) data ...

[ "def", "_add_tasks", "(", "config", ",", "tasks_file", ",", "tasks_type", ",", "priority", ",", "redundancy", ")", ":", "try", ":", "project", "=", "find_project_by_short_name", "(", "config", ".", "project", "[", "'short_name'", "]", ",", "config", ".", "pb...

49.794118

19.588235

def next(self): """Return a column one by one :raises: StopIteration """ if self._cur_col >= len(self._rec): self._cur_col = 0 raise StopIteration col = self._rec[self._cur_col] self._cur_col += 1 return col

[ "def", "next", "(", "self", ")", ":", "if", "self", ".", "_cur_col", ">=", "len", "(", "self", ".", "_rec", ")", ":", "self", ".", "_cur_col", "=", "0", "raise", "StopIteration", "col", "=", "self", ".", "_rec", "[", "self", ".", "_cur_col", "]", ...

25.272727

12.363636

def valUserCert(self, byts, cacerts=None): ''' Validate the PEM encoded x509 user certificate bytes and return it. Args: byts (bytes): The bytes for the User Certificate. cacerts (tuple): A tuple of OpenSSL.crypto.X509 CA Certificates. Raises: OpenSS...

[ "def", "valUserCert", "(", "self", ",", "byts", ",", "cacerts", "=", "None", ")", ":", "cert", "=", "crypto", ".", "load_certificate", "(", "crypto", ".", "FILETYPE_PEM", ",", "byts", ")", "if", "cacerts", "is", "None", ":", "cacerts", "=", "self", "."...

32.269231

27.269231

def process_ndex_neighborhood(gene_names, network_id=None, rdf_out='bel_output.rdf', print_output=True): """Return a BelRdfProcessor for an NDEx network neighborhood. Parameters ---------- gene_names : list A list of HGNC gene symbols to search the neighborhood of....

[ "def", "process_ndex_neighborhood", "(", "gene_names", ",", "network_id", "=", "None", ",", "rdf_out", "=", "'bel_output.rdf'", ",", "print_output", "=", "True", ")", ":", "logger", ".", "warning", "(", "'This method is deprecated and the results are not '", "'guarantee...

38.403846

22.057692

def delete_user_from_group(self, GroupID, UserID): """Delete a user from a group.""" # http://teampasswordmanager.com/docs/api-groups/#del_user log.info('Delete user %s from group %s' % (UserID, GroupID)) self.put('groups/%s/delete_user/%s.json' % (GroupID, UserID))

[ "def", "delete_user_from_group", "(", "self", ",", "GroupID", ",", "UserID", ")", ":", "# http://teampasswordmanager.com/docs/api-groups/#del_user", "log", ".", "info", "(", "'Delete user %s from group %s'", "%", "(", "UserID", ",", "GroupID", ")", ")", "self", ".", ...

58.8

18.6

def simplex_iterator(scale, boundary=True): """ Systematically iterates through a lattice of points on the 2-simplex. Parameters ---------- scale: Int The normalized scale of the simplex, i.e. N such that points (x,y,z) satisify x + y + z == N boundary: bool, True Inclu...

[ "def", "simplex_iterator", "(", "scale", ",", "boundary", "=", "True", ")", ":", "start", "=", "0", "if", "not", "boundary", ":", "start", "=", "1", "for", "i", "in", "range", "(", "start", ",", "scale", "+", "(", "1", "-", "start", ")", ")", ":"...

27.407407

21.703704

def is_bare_exception(self, node): """ Checks if the node is a bare exception name from an except block. """ return isinstance(node, Name) and node.id in self.current_except_names

[ "def", "is_bare_exception", "(", "self", ",", "node", ")", ":", "return", "isinstance", "(", "node", ",", "Name", ")", "and", "node", ".", "id", "in", "self", ".", "current_except_names" ]

34.5

19.5

def summary(self): """Summary by packages and dependencies """ print("\nStatus summary") print("=" * 79) print("{0}found {1} dependencies in {2} packages.{3}\n".format( self.grey, self.count_dep, self.count_pkg, self.endc))

[ "def", "summary", "(", "self", ")", ":", "print", "(", "\"\\nStatus summary\"", ")", "print", "(", "\"=\"", "*", "79", ")", "print", "(", "\"{0}found {1} dependencies in {2} packages.{3}\\n\"", ".", "format", "(", "self", ".", "grey", ",", "self", ".", "count_...

38.428571

14.714286

def get_chunk(self,x,z): """ Return a chunk specified by the chunk coordinates x,z. Raise InconceivedChunk if the chunk is not yet generated. To get the raw NBT data, use get_nbt. """ return self.chunkclass(self.get_nbt(x, z))

[ "def", "get_chunk", "(", "self", ",", "x", ",", "z", ")", ":", "return", "self", ".", "chunkclass", "(", "self", ".", "get_nbt", "(", "x", ",", "z", ")", ")" ]

43.5

18.5

def save(self, path): """Save the specification of this MLPipeline in a JSON file. The content of the JSON file is the dict returned by the `to_dict` method. Args: path (str): Path to the JSON file to write. """ with open(path, 'w') as out_file: json.dum...

[ "def", "save", "(", "self", ",", "path", ")", ":", "with", "open", "(", "path", ",", "'w'", ")", "as", "out_file", ":", "json", ".", "dump", "(", "self", ".", "to_dict", "(", ")", ",", "out_file", ",", "indent", "=", "4", ")" ]

34.8

20.1

def get_template_sources(self, template_name, template_dirs=None): """ Return the absolute paths to "template_name" in the specified app If the name does not contain an app name (no colon), an empty list is returned. The parent FilesystemLoader.load_template_source() will take ca...

[ "def", "get_template_sources", "(", "self", ",", "template_name", ",", "template_dirs", "=", "None", ")", ":", "if", "':'", "not", "in", "template_name", ":", "return", "[", "]", "app_name", ",", "template_name", "=", "template_name", ".", "split", "(", "\":...

43.333333

18.533333

def docker_fabric(*args, **kwargs): """ :param args: Positional arguments to Docker client. :param kwargs: Keyword arguments to Docker client. :return: Docker client. :rtype: dockerfabric.apiclient.DockerFabricClient | dockerfabric.cli.DockerCliClient """ ci = kwargs.get('client_implementati...

[ "def", "docker_fabric", "(", "*", "args", ",", "*", "*", "kwargs", ")", ":", "ci", "=", "kwargs", ".", "get", "(", "'client_implementation'", ")", "or", "env", ".", "get", "(", "'docker_fabric_implementation'", ")", "or", "CLIENT_API", "if", "ci", "==", ...

43.538462

16

def indexed_sum_over_const(cls, ops, kwargs): r'''Execute an indexed sum over a term that does not depend on the summation indices .. math:: \sum_{j=1}^{N} a = N a >>> a = symbols('a') >>> i, j = (IdxSym(s) for s in ('i', 'j')) >>> unicode(Sum(i, 1, 2)(a)) '2 a' >>> unicode(S...

[ "def", "indexed_sum_over_const", "(", "cls", ",", "ops", ",", "kwargs", ")", ":", "term", ",", "", "*", "ranges", "=", "ops", "new_ranges", "=", "[", "]", "new_term", "=", "term", "for", "r", "in", "ranges", ":", "if", "r", ".", "index_symbol", "not"...

25.933333

19.266667

def data_and_labels(self): """ Dataset features and labels in a matrix form for learning. Also returns sample_ids in the same order. Returns ------- data_matrix : ndarray 2D array of shape [num_samples, num_features] with features corresponding r...

[ "def", "data_and_labels", "(", "self", ")", ":", "sample_ids", "=", "np", ".", "array", "(", "self", ".", "keys", ")", "label_dict", "=", "self", ".", "labels", "matrix", "=", "np", ".", "full", "(", "[", "self", ".", "num_samples", ",", "self", ".",...

33.185185

19.333333

def write(self, message): """ (coroutine) Write a single message into the pipe. """ if self.done_f.done(): raise BrokenPipeError try: yield From(write_message_to_pipe(self.pipe_instance.pipe_handle, message)) except BrokenPipeError: ...

[ "def", "write", "(", "self", ",", "message", ")", ":", "if", "self", ".", "done_f", ".", "done", "(", ")", ":", "raise", "BrokenPipeError", "try", ":", "yield", "From", "(", "write_message_to_pipe", "(", "self", ".", "pipe_instance", ".", "pipe_handle", ...

27.692308

15.692308

def is_job_complete(job_id, conn=None): """ is_job_done function checks to if Brain.Jobs Status is Completed Completed is defined in statics as Done|Stopped|Error :param job_id: <str> id for the job :param conn: (optional)<connection> to run on :return: <dict> if job is done <false> if """...

[ "def", "is_job_complete", "(", "job_id", ",", "conn", "=", "None", ")", ":", "result", "=", "False", "job", "=", "RBJ", ".", "get", "(", "job_id", ")", ".", "run", "(", "conn", ")", "if", "job", "and", "job", ".", "get", "(", "STATUS_FIELD", ")", ...

30.066667

14.733333

def _createTimeSeriesObjects(self, timeSeries, filename): """ Create GSSHAPY TimeSeries and TimeSeriesValue Objects Method """ try: # Determine number of value columns valColumns = len(timeSeries[0]['values']) # Create List of GSSHAPY TimeSeries objec...

[ "def", "_createTimeSeriesObjects", "(", "self", ",", "timeSeries", ",", "filename", ")", ":", "try", ":", "# Determine number of value columns", "valColumns", "=", "len", "(", "timeSeries", "[", "0", "]", "[", "'values'", "]", ")", "# Create List of GSSHAPY TimeSeri...

40.071429

19.571429

def _get_index(self): """ Get the guideline's index. This must return an ``int``. Subclasses may override this method. """ glyph = self.glyph if glyph is not None: parent = glyph else: parent = self.font if parent is None: ...

[ "def", "_get_index", "(", "self", ")", ":", "glyph", "=", "self", ".", "glyph", "if", "glyph", "is", "not", "None", ":", "parent", "=", "glyph", "else", ":", "parent", "=", "self", ".", "font", "if", "parent", "is", "None", ":", "return", "None", "...

24.933333

12.266667

def build_global(self, global_node): """parse `global` section, and return the config.Global Args: global_node (TreeNode): `global` section treenode Returns: config.Global: an object """ config_block_lines = self.__build_config_block( globa...

[ "def", "build_global", "(", "self", ",", "global_node", ")", ":", "config_block_lines", "=", "self", ".", "__build_config_block", "(", "global_node", ".", "config_block", ")", "return", "config", ".", "Global", "(", "config_block", "=", "config_block_lines", ")" ]

30

18.461538

def BytesDecoder(field_number, is_repeated, is_packed, key, new_default): """Returns a decoder for a bytes field.""" local_DecodeVarint = _DecodeVarint assert not is_packed if is_repeated: tag_bytes = encoder.TagBytes(field_number, wire_format.WIRETYPE_LENGTH_DELIMITED) ...

[ "def", "BytesDecoder", "(", "field_number", ",", "is_repeated", ",", "is_packed", ",", "key", ",", "new_default", ")", ":", "local_DecodeVarint", "=", "_DecodeVarint", "assert", "not", "is_packed", "if", "is_repeated", ":", "tag_bytes", "=", "encoder", ".", "Tag...

37.057143

17.057143

def data_request(self, payload, timeout=TIMEOUT): """Perform a data_request and return the result.""" request_url = self.base_url + "/data_request" return requests.get(request_url, timeout=timeout, params=payload)

[ "def", "data_request", "(", "self", ",", "payload", ",", "timeout", "=", "TIMEOUT", ")", ":", "request_url", "=", "self", ".", "base_url", "+", "\"/data_request\"", "return", "requests", ".", "get", "(", "request_url", ",", "timeout", "=", "timeout", ",", ...

58.5

13.75

def map(self, callable): """ Apply 'callable' function over all values. """ for k,v in self.iteritems(): self[k] = callable(v)

[ "def", "map", "(", "self", ",", "callable", ")", ":", "for", "k", ",", "v", "in", "self", ".", "iteritems", "(", ")", ":", "self", "[", "k", "]", "=", "callable", "(", "v", ")" ]

37.75

6.75

def p_static_scalar_unary_op(p): '''static_scalar : PLUS static_scalar | MINUS static_scalar''' p[0] = ast.UnaryOp(p[1], p[2], lineno=p.lineno(1))

[ "def", "p_static_scalar_unary_op", "(", "p", ")", ":", "p", "[", "0", "]", "=", "ast", ".", "UnaryOp", "(", "p", "[", "1", "]", ",", "p", "[", "2", "]", ",", "lineno", "=", "p", ".", "lineno", "(", "1", ")", ")" ]

43

7

def getResponse(self, context=""): """ Poll for finished block or first byte ACK. Args: context (str): internal serial call context. Returns: string: Response, implict cast from byte array. """ waits = 0 # allowed interval counter response_str = ...

[ "def", "getResponse", "(", "self", ",", "context", "=", "\"\"", ")", ":", "waits", "=", "0", "# allowed interval counter", "response_str", "=", "\"\"", "# returned bytes in string default", "try", ":", "waits", "=", "0", "# allowed interval counter", "while", "(", ...

40.625

17.78125

def close(self): """ Mark the latch as closed, and cause every sleeping thread to be woken, with :class:`mitogen.core.LatchError` raised in each thread. """ self._lock.acquire() try: self.closed = True while self._waking < len(self._sleeping): ...

[ "def", "close", "(", "self", ")", ":", "self", ".", "_lock", ".", "acquire", "(", ")", "try", ":", "self", ".", "closed", "=", "True", "while", "self", ".", "_waking", "<", "len", "(", "self", ".", "_sleeping", ")", ":", "wsock", ",", "cookie", "...

34.928571

15.214286

def build_distribution(): """Build distributions of the code.""" result = invoke.run('python setup.py sdist bdist_egg bdist_wheel', warn=True, hide=True) if result.ok: print("[{}GOOD{}] Distribution built without errors." .format(GOOD_COLOR, RESET_COLOR)) el...

[ "def", "build_distribution", "(", ")", ":", "result", "=", "invoke", ".", "run", "(", "'python setup.py sdist bdist_egg bdist_wheel'", ",", "warn", "=", "True", ",", "hide", "=", "True", ")", "if", "result", ".", "ok", ":", "print", "(", "\"[{}GOOD{}] Distribu...

40.583333

17.416667

def generate_unique_key(master_key_path, url): """ Input1: Path to the BD2K Master Key (for S3 Encryption) Input2: S3 URL (e.g. https://s3-us-west-2.amazonaws.com/cgl-driver-projects-encrypted/wcdt/exome_bams/DTB-111-N.bam) Returns: 32-byte unique key generated for that URL """ with open(master...

[ "def", "generate_unique_key", "(", "master_key_path", ",", "url", ")", ":", "with", "open", "(", "master_key_path", ",", "'r'", ")", "as", "f", ":", "master_key", "=", "f", ".", "read", "(", ")", "assert", "len", "(", "master_key", ")", "==", "32", ","...

49.785714

24.928571