kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def runScript(self, scriptname, additional_environment=None): ''' Run the specified script from the scripts section of the module.json file in the directory of this module. ''' import subprocess import shlex command = self.getScript(scriptname) if command is ...	[ "def", "runScript", "(", "self", ",", "scriptname", ",", "additional_environment", "=", "None", ")", ":", "import", "subprocess", "import", "shlex", "command", "=", "self", ".", "getScript", "(", "scriptname", ")", "if", "command", "is", "None", ":", "logger...	32.642857	18.5
def batch_update(self, values, w=1): """ Update the t-digest with an iterable of values. This assumes all points have the same weight. """ for x in values: self.update(x, w) self.compress() return	[ "def", "batch_update", "(", "self", ",", "values", ",", "w", "=", "1", ")", ":", "for", "x", "in", "values", ":", "self", ".", "update", "(", "x", ",", "w", ")", "self", ".", "compress", "(", ")", "return" ]	28.444444	15.777778
def do_tagg(self, arglist: List[str]): """version of creating an html tag using arglist instead of argparser""" if len(arglist) >= 2: tag = arglist[0] content = arglist[1:] self.poutput('<{0}>{1}</{0}>'.format(tag, ' '.join(content))) else: self.pe...	[ "def", "do_tagg", "(", "self", ",", "arglist", ":", "List", "[", "str", "]", ")", ":", "if", "len", "(", "arglist", ")", ">=", "2", ":", "tag", "=", "arglist", "[", "0", "]", "content", "=", "arglist", "[", "1", ":", "]", "self", ".", "poutput"...	44.375	14.125
def prepare_new_layer(self, input_layer): """Prepare new layer for the output layer. :param input_layer: Vector layer. :type input_layer: QgsVectorLayer :return: New memory layer duplicated from input_layer. :rtype: QgsVectorLayer """ # create memory layer ...	[ "def", "prepare_new_layer", "(", "self", ",", "input_layer", ")", ":", "# create memory layer", "output_layer_name", "=", "os", ".", "path", ".", "splitext", "(", "input_layer", ".", "name", "(", ")", ")", "[", "0", "]", "output_layer_name", "=", "unique_filen...	36.622222	14.733333
def cylindrical_histogram(data=None, rho_bins="numpy", phi_bins=16, z_bins="numpy", transformed=False, args, *kwargs): """Facade construction function for the CylindricalHistogram. """ dropna = kwargs.pop("dropna", True) data = _prepare_data(data, transformed=transformed, klass=CylindricalHistogram,...	[ "def", "cylindrical_histogram", "(", "data", "=", "None", ",", "rho_bins", "=", "\"numpy\"", ",", "phi_bins", "=", "16", ",", "z_bins", "=", "\"numpy\"", ",", "transformed", "=", "False", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "dropna", "...	49.6	24.8
def rapl_read(): """ Read power stats and return dictionary""" basenames = glob.glob('/sys/class/powercap/intel-rapl:*/') basenames = sorted(set({x for x in basenames})) pjoin = os.path.join ret = list() for path in basenames: name = None try: name = cat(pjoin(path, ...	[ "def", "rapl_read", "(", ")", ":", "basenames", "=", "glob", ".", "glob", "(", "'/sys/class/powercap/intel-rapl:*/'", ")", "basenames", "=", "sorted", "(", "set", "(", "{", "x", "for", "x", "in", "basenames", "}", ")", ")", "pjoin", "=", "os", ".", "pa...	37.958333	19.916667
def mark_all_read(request): """ Mark all messages as read (i.e. delete from inbox) for current logged in user """ from .settings import stored_messages_settings backend = stored_messages_settings.STORAGE_BACKEND() backend.inbox_purge(request.user) return Response({"message": "All messages re...	[ "def", "mark_all_read", "(", "request", ")", ":", "from", ".", "settings", "import", "stored_messages_settings", "backend", "=", "stored_messages_settings", ".", "STORAGE_BACKEND", "(", ")", "backend", ".", "inbox_purge", "(", "request", ".", "user", ")", "return"...	39.75	12
def get_importable_modules(folder): """Find all module files in the given folder that end with '.py' and don't start with an underscore. @return module names @rtype: iterator of string """ for fname in os.listdir(folder): if fname.endswith('.py') and not fname.startswith('_'): ...	[ "def", "get_importable_modules", "(", "folder", ")", ":", "for", "fname", "in", "os", ".", "listdir", "(", "folder", ")", ":", "if", "fname", ".", "endswith", "(", "'.py'", ")", "and", "not", "fname", ".", "startswith", "(", "'_'", ")", ":", "yield", ...	36.666667	8.333333
def publishToRoom(self, roomId, name, data, userList=None): """ Publish to given room data submitted """ if userList is None: userList = self.getRoom(roomId) # Publish data to all room users logging.debug("%s: broadcasting (name: %s, data: %s, number of users: %s)" % (self._...	[ "def", "publishToRoom", "(", "self", ",", "roomId", ",", "name", ",", "data", ",", "userList", "=", "None", ")", ":", "if", "userList", "is", "None", ":", "userList", "=", "self", ".", "getRoom", "(", "roomId", ")", "# Publish data to all room users", "log...	43.272727	20.909091
def ComputeRoot(hashes): """ Compute the root hash. Args: hashes (list): the list of hashes to build the root from. Returns: bytes: the root hash. """ if not len(hashes): raise Exception('Hashes must have length') if len(hashe...	[ "def", "ComputeRoot", "(", "hashes", ")", ":", "if", "not", "len", "(", "hashes", ")", ":", "raise", "Exception", "(", "'Hashes must have length'", ")", "if", "len", "(", "hashes", ")", "==", "1", ":", "return", "hashes", "[", "0", "]", "tree", "=", ...	23.882353	17.764706
def _get_by(key, val, l): """ Out of list l return all elements that have key=val This comes in handy when you are working with aggregated/bucketed queries """ return [x for x in l if _check_value_recursively(key, val, x)]	[ "def", "_get_by", "(", "key", ",", "val", ",", "l", ")", ":", "return", "[", "x", "for", "x", "in", "l", "if", "_check_value_recursively", "(", "key", ",", "val", ",", "x", ")", "]" ]	40.166667	16.166667
def __request(self, method, url, request_args, headers=None, stream=False): """__request. make the actual request. This method is called by the request method in case of 'regular' API-calls. Or indirectly by the__stream_request method if it concerns a 'streaming' call. """ ...	[ "def", "__request", "(", "self", ",", "method", ",", "url", ",", "request_args", ",", "headers", "=", "None", ",", "stream", "=", "False", ")", ":", "func", "=", "getattr", "(", "self", ".", "client", ",", "method", ")", "headers", "=", "headers", "i...	41	16.185185
def build_summary_table(summary, idx, is_fragment_root, indent_level, output): """Direct translation of Coordinator::PrintExecSummary() to recursively build a list of rows of summary statistics, one per exec node summary: the TExecSummary object that contains all the summary data idx: the index of the...	[ "def", "build_summary_table", "(", "summary", ",", "idx", ",", "is_fragment_root", ",", "indent_level", ",", "output", ")", ":", "# pylint: disable=too-many-locals", "attrs", "=", "[", "\"latency_ns\"", ",", "\"cpu_time_ns\"", ",", "\"cardinality\"", ",", "\"memory_us...	37.435897	20.358974
def tobuf(self, format=DEFAULT_FORMAT, encoding=ENCODING, errors="surrogateescape"): """Return a tar header as a string of 512 byte blocks. """ info = self.get_info() if format == USTAR_FORMAT: return self.create_ustar_header(info, encoding, errors) elif format == GN...	[ "def", "tobuf", "(", "self", ",", "format", "=", "DEFAULT_FORMAT", ",", "encoding", "=", "ENCODING", ",", "errors", "=", "\"surrogateescape\"", ")", ":", "info", "=", "self", ".", "get_info", "(", ")", "if", "format", "==", "USTAR_FORMAT", ":", "return", ...	41.307692	16.461538
def get_contributors(gh, repo_id): """Get list of contributors to a repository.""" try: # FIXME: Use `github3.Repository.contributors` to get this information contrib_url = gh.repository_with_id(repo_id).contributors_url r = requests.get(contrib_url) if r.status_code == 200: ...	[ "def", "get_contributors", "(", "gh", ",", "repo_id", ")", ":", "try", ":", "# FIXME: Use `github3.Repository.contributors` to get this information", "contrib_url", "=", "gh", ".", "repository_with_id", "(", "repo_id", ")", ".", "contributors_url", "r", "=", "requests",...	39.206897	19.172414
def put(self, urls=None, overrides): """Sets the acceptable HTTP method to PUT""" if urls is not None: overrides['urls'] = urls return self.where(accept='PUT', overrides)	[ "def", "put", "(", "self", ",", "urls", "=", "None", ",", "", "", "overrides", ")", ":", "if", "urls", "is", "not", "None", ":", "overrides", "[", "'urls'", "]", "=", "urls", "return", "self", ".", "where", "(", "accept", "=", "'PUT'", ",", "*"...	41.2	6
def get_me(self) -> "pyrogram.User": """A simple method for testing your authorization. Requires no parameters. Returns: Basic information about the user or bot in form of a :obj:`User` object Raises: :class:`RPCError <pyrogram.RPCError>` in case of a Telegram RPC error...	[ "def", "get_me", "(", "self", ")", "->", "\"pyrogram.User\"", ":", "return", "pyrogram", ".", "User", ".", "_parse", "(", "self", ",", "self", ".", "send", "(", "functions", ".", "users", ".", "GetFullUser", "(", "id", "=", "types", ".", "InputPeerSelf",...	31.294118	20.411765
def timezone(name, extended=True): # type: (Union[str, int]) -> _Timezone """ Return a Timezone instance given its name. """ if isinstance(name, int): return fixed_timezone(name) if name.lower() == "utc": return UTC if name in _tz_cache: return _tz_cache[name] tz ...	[ "def", "timezone", "(", "name", ",", "extended", "=", "True", ")", ":", "# type: (Union[str, int]) -> _Timezone", "if", "isinstance", "(", "name", ",", "int", ")", ":", "return", "fixed_timezone", "(", "name", ")", "if", "name", ".", "lower", "(", ")", "==...	22.352941	18.823529
def gettrace(self, burn=0, thin=1, chain=-1, slicing=None): """Return the trace (last by default). :Parameters: burn : integer The number of transient steps to skip. thin : integer Keep one in thin. chain : integer The index of the chain to fetch. I...	[ "def", "gettrace", "(", "self", ",", "burn", "=", "0", ",", "thin", "=", "1", ",", "chain", "=", "-", "1", ",", "slicing", "=", "None", ")", ":", "# XXX: handle chain == None case properly", "if", "chain", "is", "None", ":", "chain", "=", "-", "1", "...	31.37931	19.275862
def create(self): """ Creates a new record for a domain. Args: type (str): The type of the DNS record (e.g. A, CNAME, TXT). name (str): The host name, alias, or service being defined by the record. data (int): Variable data depending on record...	[ "def", "create", "(", "self", ")", ":", "input_params", "=", "{", "\"type\"", ":", "self", ".", "type", ",", "\"data\"", ":", "self", ".", "data", ",", "\"name\"", ":", "self", ".", "name", ",", "\"priority\"", ":", "self", ".", "priority", ",", "\"p...	34.810811	18.27027
def reset(self, source): """ Reset scanner's state. :param source: Source for parsing """ self.tokens = [] self.source = source self.pos = 0	[ "def", "reset", "(", "self", ",", "source", ")", ":", "self", ".", "tokens", "=", "[", "]", "self", ".", "source", "=", "source", "self", ".", "pos", "=", "0" ]	20.222222	16.111111
def make(directory): """Makes a RAS Machine directory""" if os.path.exists(directory): if os.path.isdir(directory): click.echo('Directory already exists') else: click.echo('Path exists and is not a directory') sys.exit() os.makedirs(directory) os.mkdir(o...	[ "def", "make", "(", "directory", ")", ":", "if", "os", ".", "path", ".", "exists", "(", "directory", ")", ":", "if", "os", ".", "path", ".", "isdir", "(", "directory", ")", ":", "click", ".", "echo", "(", "'Directory already exists'", ")", "else", ":...	31.076923	17.923077
def maxind_numba(block): """ filter for indels """ ## remove terminal edges inds = 0 for row in xrange(block.shape[0]): where = np.where(block[row] != 45)[0] if len(where) == 0: obs = 100 else: left = np.min(where) right = np.max(where) ...	[ "def", "maxind_numba", "(", "block", ")", ":", "## remove terminal edges", "inds", "=", "0", "for", "row", "in", "xrange", "(", "block", ".", "shape", "[", "0", "]", ")", ":", "where", "=", "np", ".", "where", "(", "block", "[", "row", "]", "!=", "...	27.666667	14.133333
def disable(self, msgid, scope="package", line=None, ignore_unknown=False): """don't output message of the given id""" self._set_msg_status( msgid, enable=False, scope=scope, line=line, ignore_unknown=ignore_unknown ) self._register_by_id_managed_msg(msgid, line)	[ "def", "disable", "(", "self", ",", "msgid", ",", "scope", "=", "\"package\"", ",", "line", "=", "None", ",", "ignore_unknown", "=", "False", ")", ":", "self", ".", "_set_msg_status", "(", "msgid", ",", "enable", "=", "False", ",", "scope", "=", "scope...	50.333333	22.666667
def get(self, args, *kwargs): """ This renders the form or, if needed, does the http redirects. """ step_url = kwargs.get('step', None) if step_url is None: if 'reset' in self.request.GET: self.storage.reset() self.storage.current_ste...	[ "def", "get", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "step_url", "=", "kwargs", ".", "get", "(", "'step'", ",", "None", ")", "if", "step_url", "is", "None", ":", "if", "'reset'", "in", "self", ".", "request", ".", "GET"...	40.76087	15.5
def get_mean_and_stddevs(self, sites, rup, dists, imt, stddev_types): """ See :meth:`superclass method <.base.GroundShakingIntensityModel.get_mean_and_stddevs>` for spec of input and result values. Implement equation 1, page 20. """ # compute median PGA on rock, ...	[ "def", "get_mean_and_stddevs", "(", "self", ",", "sites", ",", "rup", ",", "dists", ",", "imt", ",", "stddev_types", ")", ":", "# compute median PGA on rock, needed to compute non-linear site", "# amplification", "C_pga", "=", "self", ".", "COEFFS", "[", "PGA", "(",...	37.956522	21.695652
def get_object(self, queryset=None): """ get privacy settings of current user """ try: obj = self.get_queryset() except self.model.DoesNotExist: raise Http404() self.check_object_permissions(self.request, obj) return obj	[ "def", "get_object", "(", "self", ",", "queryset", "=", "None", ")", ":", "try", ":", "obj", "=", "self", ".", "get_queryset", "(", ")", "except", "self", ".", "model", ".", "DoesNotExist", ":", "raise", "Http404", "(", ")", "self", ".", "check_object_...	34.625	10.875
def add_to_queue(self, series): """Add a series to the queue @param crunchyroll.models.Series series @return bool """ result = self._android_api.add_to_queue(series_id=series.series_id) return result	[ "def", "add_to_queue", "(", "self", ",", "series", ")", ":", "result", "=", "self", ".", "_android_api", ".", "add_to_queue", "(", "series_id", "=", "series", ".", "series_id", ")", "return", "result" ]	30.125	16.25
def _warcprox_opts(self, args): ''' Takes args as produced by the argument parser built by _build_arg_parser and builds warcprox arguments object suitable to pass to warcprox.main.init_controller. Copies some arguments, renames some, populates some with defaults appropriate for b...	[ "def", "_warcprox_opts", "(", "self", ",", "args", ")", ":", "warcprox_opts", "=", "warcprox", ".", "Options", "(", ")", "warcprox_opts", ".", "address", "=", "'localhost'", "# let the OS choose an available port; discover it later using", "# sock.getsockname()[1]", "warc...	45.59375	12.78125
def parse_relation(obj: dict) -> BioCRelation: """Deserialize a dict obj to a BioCRelation object""" rel = BioCRelation() rel.id = obj['id'] rel.infons = obj['infons'] for node in obj['nodes']: rel.add_node(BioCNode(node['refid'], node['role'])) return rel	[ "def", "parse_relation", "(", "obj", ":", "dict", ")", "->", "BioCRelation", ":", "rel", "=", "BioCRelation", "(", ")", "rel", ".", "id", "=", "obj", "[", "'id'", "]", "rel", ".", "infons", "=", "obj", "[", "'infons'", "]", "for", "node", "in", "ob...	36	13
def create_stash(self, payload, path=None): """ Create a stash. (JSON document) """ if path: self._request('POST', '/stashes/{}'.format(path), json=payload) else: self._request('POST', '/stashes', json=payload) return True	[ "def", "create_stash", "(", "self", ",", "payload", ",", "path", "=", "None", ")", ":", "if", "path", ":", "self", ".", "_request", "(", "'POST'", ",", "'/stashes/{}'", ".", "format", "(", "path", ")", ",", "json", "=", "payload", ")", "else", ":", ...	31.1	11.7
def qsnorm(p): """ rational approximation for x where q(x)=d, q being the cumulative normal distribution function. taken from Abramowitz & Stegun p. 933 \|error(x)\| < 4.510*-4 """ d = p if d < 0. or d > 1.: print('d not in (1,1) ') sys.exit() x = 0. if (d - 0.5) > 0:...	[ "def", "qsnorm", "(", "p", ")", ":", "d", "=", "p", "if", "d", "<", "0.", "or", "d", ">", "1.", ":", "print", "(", "'d not in (1,1) '", ")", "sys", ".", "exit", "(", ")", "x", "=", "0.", "if", "(", "d", "-", "0.5", ")", ">", "0", ":", "d"...	28.095238	20.380952
def list_image(root, recursive, exts): """Traverses the root of directory that contains images and generates image list iterator. Parameters ---------- root: string recursive: bool exts: string Returns ------- image iterator that contains all the image under the specified path ...	[ "def", "list_image", "(", "root", ",", "recursive", ",", "exts", ")", ":", "i", "=", "0", "if", "recursive", ":", "cat", "=", "{", "}", "for", "path", ",", "dirs", ",", "files", "in", "os", ".", "walk", "(", "root", ",", "followlinks", "=", "True...	34.638889	17.75
def set(self, val): """Set the value""" import time now = time.time() expected_value = [] new_val = {} new_val['timestamp'] = now if self._value != None: new_val['last_value'] = self._value expected_value = ['current_value', str(self._value...	[ "def", "set", "(", "self", ",", "val", ")", ":", "import", "time", "now", "=", "time", ".", "time", "(", ")", "expected_value", "=", "[", "]", "new_val", "=", "{", "}", "new_val", "[", "'timestamp'", "]", "=", "now", "if", "self", ".", "_value", ...	34.473684	15.263158
def bootstrap_repl(which_ns: str) -> types.ModuleType: """Bootstrap the REPL with a few useful vars and returned the bootstrapped module so it's functions can be used by the REPL command.""" repl_ns = runtime.Namespace.get_or_create(sym.symbol("basilisp.repl")) ns = runtime.Namespace.get_or_create(s...	[ "def", "bootstrap_repl", "(", "which_ns", ":", "str", ")", "->", "types", ".", "ModuleType", ":", "repl_ns", "=", "runtime", ".", "Namespace", ".", "get_or_create", "(", "sym", ".", "symbol", "(", "\"basilisp.repl\"", ")", ")", "ns", "=", "runtime", ".", ...	49.4	16
def parse_options(self, kwargs): """Validate the provided kwargs and return options as json string.""" kwargs = {camelize(key): value for key, value in kwargs.items()} for key in kwargs.keys(): assert key in self.valid_options, ( 'The option {} is not in the available...	[ "def", "parse_options", "(", "self", ",", "kwargs", ")", ":", "kwargs", "=", "{", "camelize", "(", "key", ")", ":", "value", "for", "key", ",", "value", "in", "kwargs", ".", "items", "(", ")", "}", "for", "key", "in", "kwargs", ".", "keys", "(", ...	48.384615	19.076923
def get_default_jprops_parsers(parser_finder: ParserFinder, conversion_finder: ConversionFinder) -> List[AnyParser]: """ Utility method to return the default parsers able to parse a dictionary from a properties file. :return: """ return [SingleFileParserFunction(parser_function=read_dict_from_proper...	[ "def", "get_default_jprops_parsers", "(", "parser_finder", ":", "ParserFinder", ",", "conversion_finder", ":", "ConversionFinder", ")", "->", "List", "[", "AnyParser", "]", ":", "return", "[", "SingleFileParserFunction", "(", "parser_function", "=", "read_dict_from_prop...	62.466667	34.733333
def copen(filepath, flag='r', encoding=None): """ FIXME: How to test this ? >>> c = copen(__file__) >>> c is not None True """ if encoding is None: encoding = locale.getdefaultlocale()[1] return codecs.open(filepath, flag, encoding)	[ "def", "copen", "(", "filepath", ",", "flag", "=", "'r'", ",", "encoding", "=", "None", ")", ":", "if", "encoding", "is", "None", ":", "encoding", "=", "locale", ".", "getdefaultlocale", "(", ")", "[", "1", "]", "return", "codecs", ".", "open", "(", ...	20.230769	17.769231
def venue_stocks(self): """List the stocks available for trading on the venue. https://starfighter.readme.io/docs/list-stocks-on-venue """ url = urljoin(self.base_url, 'venues/{0}/stocks'.format(self.venue)) return self.session.get(url).json()	[ "def", "venue_stocks", "(", "self", ")", ":", "url", "=", "urljoin", "(", "self", ".", "base_url", ",", "'venues/{0}/stocks'", ".", "format", "(", "self", ".", "venue", ")", ")", "return", "self", ".", "session", ".", "get", "(", "url", ")", ".", "js...	39.714286	17
def p_subidentifiers_defval(self, p): """subidentifiers_defval : subidentifiers_defval subidentifier_defval \| subidentifier_defval""" n = len(p) if n == 3: p[0] = ('subidentifiers_defval', p[1][1] + [p[2]]) elif n == 2: p[0] = ('su...	[ "def", "p_subidentifiers_defval", "(", "self", ",", "p", ")", ":", "n", "=", "len", "(", "p", ")", "if", "n", "==", "3", ":", "p", "[", "0", "]", "=", "(", "'subidentifiers_defval'", ",", "p", "[", "1", "]", "[", "1", "]", "+", "[", "p", "[",...	42.75	12.625
def add_update_topology_db(self, **params): """Add or update an entry to the topology DB. """ topo_dict = params.get('columns') session = db.get_session() host = topo_dict.get('host') protocol_interface = topo_dict.get('protocol_interface') with session.begin(subtransacti...	[ "def", "add_update_topology_db", "(", "self", ",", "", "", "params", ")", ":", "topo_dict", "=", "params", ".", "get", "(", "'columns'", ")", "session", "=", "db", ".", "get_session", "(", ")", "host", "=", "topo_dict", ".", "get", "(", "'host'", ")"...	55.95	18.025
def start(self): """ Start the installation wizard """ self.log.debug('Starting the installation process') self.browser.open(self.url) self.system_check()	[ "def", "start", "(", "self", ")", ":", "self", ".", "log", ".", "debug", "(", "'Starting the installation process'", ")", "self", ".", "browser", ".", "open", "(", "self", ".", "url", ")", "self", ".", "system_check", "(", ")" ]	21.777778	16
def _validate_no_rels(param, rels): """ Ensure the sortable field is not on a relationship """ if param.field in rels: raise InvalidQueryParams(**{ 'detail': 'The sort query param value of "%s" is not ' 'supported. Sorting on relationships is not ' ...	[ "def", "_validate_no_rels", "(", "param", ",", "rels", ")", ":", "if", "param", ".", "field", "in", "rels", ":", "raise", "InvalidQueryParams", "(", "", "", "{", "'detail'", ":", "'The sort query param value of \"%s\" is not '", "'supported. Sorting on relationships...	38.363636	17.272727
def get_filtered_devices( self, model_name, device_types="upnp:rootdevice", timeout=2 ): """ returns a dict of devices that contain the given model name """ # get list of all UPNP devices in the network upnp_devices = self.discover_upnp_devices(st=device_types) ...	[ "def", "get_filtered_devices", "(", "self", ",", "model_name", ",", "device_types", "=", "\"upnp:rootdevice\"", ",", "timeout", "=", "2", ")", ":", "# get list of all UPNP devices in the network", "upnp_devices", "=", "self", ".", "discover_upnp_devices", "(", "st", "...	40.453125	19.515625
def managed_wrapper_class_factory(zos_obj): """Creates and returns a wrapper class of a ZOS object, exposing the ZOS objects methods and propertis, and patching custom specialized attributes @param zos_obj: ZOS API Python COM object """ cls_name = repr(zos_obj).split()[0].split('.')[-1] disp...	[ "def", "managed_wrapper_class_factory", "(", "zos_obj", ")", ":", "cls_name", "=", "repr", "(", "zos_obj", ")", ".", "split", "(", ")", "[", "0", "]", ".", "split", "(", "'.'", ")", "[", "-", "1", "]", "dispatch_attr", "=", "'_'", "+", "cls_name", "....	41.769231	24.602564
def _max_lengths(): """ The length of the largest magic string + its offset""" max_header_length = max([len(x.byte_match) + x.offset for x in magic_header_array]) max_footer_length = max([len(x.byte_match) + abs(x.offset) for x in magic_footer_array]...	[ "def", "_max_lengths", "(", ")", ":", "max_header_length", "=", "max", "(", "[", "len", "(", "x", ".", "byte_match", ")", "+", "x", ".", "offset", "for", "x", "in", "magic_header_array", "]", ")", "max_footer_length", "=", "max", "(", "[", "len", "(", ...	51.857143	14.714286
def _serializeParamsUniq_eval(parentUnit, obj, isDeclaration, priv): """ Decide to serialize only objs with uniq parameters and class :param priv: private data for this function ({frozen_params: obj}) :return: tuple (do serialize this object, next priv) """ params = paramsToValTuple(p...	[ "def", "_serializeParamsUniq_eval", "(", "parentUnit", ",", "obj", ",", "isDeclaration", ",", "priv", ")", ":", "params", "=", "paramsToValTuple", "(", "parentUnit", ")", "if", "priv", "is", "None", ":", "priv", "=", "{", "}", "if", "isDeclaration", ":", "...	24.730769	20.269231
def on_message(self, message): """Message from the backend has been received. :param message: Message string received. """ work_unit = SelenolMessage(message) request_id = work_unit.request_id if message['reason'] == ['selenol', 'request']: try: ...	[ "def", "on_message", "(", "self", ",", "message", ")", ":", "work_unit", "=", "SelenolMessage", "(", "message", ")", "request_id", "=", "work_unit", ".", "request_id", "if", "message", "[", "'reason'", "]", "==", "[", "'selenol'", ",", "'request'", "]", ":...	34.837838	11.945946
def __parse(self) -> object: """Selects the appropriate method to decode next bencode element and returns the result.""" char = self.data[self.idx: self.idx + 1] if char in [b'1', b'2', b'3', b'4', b'5', b'6', b'7', b'8', b'9', b'0']: str_len = int(self.__read_to(b':')) r...	[ "def", "__parse", "(", "self", ")", "->", "object", ":", "char", "=", "self", ".", "data", "[", "self", ".", "idx", ":", "self", ".", "idx", "+", "1", "]", "if", "char", "in", "[", "b'1'", ",", "b'2'", ",", "b'3'", ",", "b'4'", ",", "b'5'", "...	47.611111	17.222222
def get_matching_service_template_file(service_name, template_files): """ Return the template file that goes with the given service name, or return None if there's no match. Subservices return the parent service's file. """ # If this is a subservice, use the parent service's template service_na...	[ "def", "get_matching_service_template_file", "(", "service_name", ",", "template_files", ")", ":", "# If this is a subservice, use the parent service's template", "service_name", "=", "service_name", ".", "split", "(", "'.'", ")", "[", "0", "]", "if", "service_name", "in"...	44.1	16.1
def resource_property(klass, name, **kwargs): """Builds a resource object property.""" klass.PROPERTIES[name] = kwargs def getter(self): return getattr(self, '_%s' % name, kwargs.get('default', None)) if kwargs.get('readonly', False): setattr(klass, name, property(getter)) else: ...	[ "def", "resource_property", "(", "klass", ",", "name", ",", "", "", "kwargs", ")", ":", "klass", ".", "PROPERTIES", "[", "name", "]", "=", "kwargs", "def", "getter", "(", "self", ")", ":", "return", "getattr", "(", "self", ",", "'_%s'", "%", "name"...	33.846154	16
def get_parameter_value(self, parameter, from_cache=True, timeout=10): """ Retrieve the current value of the specified parameter. :param str parameter: Either a fully-qualified XTCE name or an alias in the format ``NAMESPACE/NAME``. :param bool from_cache: ...	[ "def", "get_parameter_value", "(", "self", ",", "parameter", ",", "from_cache", "=", "True", ",", "timeout", "=", "10", ")", ":", "params", "=", "{", "'fromCache'", ":", "from_cache", ",", "'timeout'", ":", "int", "(", "timeout", "*", "1000", ")", ",", ...	47.033333	20.1
def set_skips(self, skips): """Set the line skips.""" skips.sort() internal_assert(lambda: len(set(skips)) == len(skips), "duplicate line skip(s) in skips", skips) self.skips = skips	[ "def", "set_skips", "(", "self", ",", "skips", ")", ":", "skips", ".", "sort", "(", ")", "internal_assert", "(", "lambda", ":", "len", "(", "set", "(", "skips", ")", ")", "==", "len", "(", "skips", ")", ",", "\"duplicate line skip(s) in skips\"", ",", ...	42	22.2
def del_cells(self, name): """Implementation of cells deletion ``del space.name`` where name is a cells, or ``del space.cells['name']`` """ if name in self.cells: cells = self.cells[name] self.cells.del_item(name) self.inherit() se...	[ "def", "del_cells", "(", "self", ",", "name", ")", ":", "if", "name", "in", "self", ".", "cells", ":", "cells", "=", "self", ".", "cells", "[", "name", "]", "self", ".", "cells", ".", "del_item", "(", "name", ")", "self", ".", "inherit", "(", ")"...	29.2	15.9
def get_port_profile_for_intf_output_has_more(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") get_port_profile_for_intf = ET.Element("get_port_profile_for_intf") config = get_port_profile_for_intf output = ET.SubElement(get_port_profile_for_intf,...	[ "def", "get_port_profile_for_intf_output_has_more", "(", "self", ",", "", "", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "get_port_profile_for_intf", "=", "ET", ".", "Element", "(", "\"get_port_profile_for_intf\"", ")", "con...	42.5	14.416667
def is_token_expired(self, margin=None): """Determine if the token is expired. :returns: ``True`` if the token is expired, ``False`` if not, and ``None`` if there is no token set. :param margin: A security time margin in seconds before real expiration. ...	[ "def", "is_token_expired", "(", "self", ",", "margin", "=", "None", ")", ":", "if", "self", ".", "token", "is", "None", ":", "return", "None", "return", "not", "utils", ".", "is_token_valid", "(", "self", ".", "token", ",", "margin", ")" ]	34.833333	19.944444
def get_alpha_or_number(number, template): """Returns an Alphanumber that represents the number passed in, expressed as defined in the template. Otherwise, returns the number """ match = re.match(r".*\{alpha:(\d+a\d+d)\}$", template.strip()) if match and match.groups(): format = match.groups...	[ "def", "get_alpha_or_number", "(", "number", ",", "template", ")", ":", "match", "=", "re", ".", "match", "(", "r\".*\\{alpha:(\\d+a\\d+d)\\}$\"", ",", "template", ".", "strip", "(", ")", ")", "if", "match", "and", "match", ".", "groups", "(", ")", ":", ...	41.666667	9.666667
def _get_mid_and_update_msg(self, msg, use_mid): """Get message ID for current request and assign to msg.mid if needed. Parameters ---------- msg : katcp.Message ?request message use_mid : bool or None If msg.mid is None, a new message ID will be created. msg.mid will b...	[ "def", "_get_mid_and_update_msg", "(", "self", ",", "msg", ",", "use_mid", ")", ":", "if", "use_mid", "is", "None", ":", "use_mid", "=", "self", ".", "_server_supports_ids", "if", "msg", ".", "mid", "is", "None", ":", "mid", "=", "self", ".", "_next_id",...	32.7	20.733333
def get_default_object_parsers(parser_finder: ParserFinder, conversion_finder: ConversionFinder) -> List[AnyParser]: """ Utility method to return the default parsers able to parse an object from a file. Note that MultifileObjectParser is not provided in this list, as it is already added in a hardcoded way i...	[ "def", "get_default_object_parsers", "(", "parser_finder", ":", "ParserFinder", ",", "conversion_finder", ":", "ConversionFinder", ")", "->", "List", "[", "AnyParser", "]", ":", "return", "[", "SingleFileParserFunction", "(", "parser_function", "=", "read_object_from_pi...	53.307692	30.846154
def call_script(self, key, tmp_key, key_type, start, end, exclude, *args): """Call the lua scripts with given keys and args Parameters ----------- key: str The key of the index sorted-set tmp_key: str The final temporary key where to store the filtered pr...	[ "def", "call_script", "(", "self", ",", "key", ",", "tmp_key", ",", "key_type", ",", "start", ",", "end", ",", "exclude", ",", "*", "args", ")", ":", "self", ".", "model", ".", "database", ".", "call_script", "(", "# be sure to use the script dict at the cla...	39.655172	22.310345
def get_leaf_children(gos_user, go2obj_arg): """Find all the GO descendants under all user GO IDs. Return leaf-level GO IDs.""" childgoid2obj = {} for goid_usr in gos_user: goobj_usr = go2obj_arg[goid_usr] fill_childgoid2obj(childgoid2obj, goobj_usr) return set(go for go, o in childgoid2...	[ "def", "get_leaf_children", "(", "gos_user", ",", "go2obj_arg", ")", ":", "childgoid2obj", "=", "{", "}", "for", "goid_usr", "in", "gos_user", ":", "goobj_usr", "=", "go2obj_arg", "[", "goid_usr", "]", "fill_childgoid2obj", "(", "childgoid2obj", ",", "goobj_usr"...	49.142857	10.857143
def unitary_operator(state_vector): """ Uses QR factorization to create a unitary operator that can encode an arbitrary normalized vector into the wavefunction of a quantum state. Assumes that the state of the input qubits is to be expressed as .. math:: (1, 0, \\ldots, 0)^T :par...	[ "def", "unitary_operator", "(", "state_vector", ")", ":", "if", "not", "np", ".", "allclose", "(", "[", "np", ".", "linalg", ".", "norm", "(", "state_vector", ")", "]", ",", "[", "1", "]", ")", ":", "raise", "ValueError", "(", "\"Vector must be normalize...	30.891892	21.054054
def read_csv(self, dtype=False, parse_dates=True, args, *kwargs): """Fetch the target and pass through to pandas.read_csv Don't provide the first argument of read_csv(); it is supplied internally. """ import pandas t = self.resolved_url.get_resource().get_target() k...	[ "def", "read_csv", "(", "self", ",", "dtype", "=", "False", ",", "parse_dates", "=", "True", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "import", "pandas", "t", "=", "self", ".", "resolved_url", ".", "get_resource", "(", ")", ".", "get_targ...	33	27.153846
def _compute_needed_metrics(self, instance, available_metrics): """ Compare the available metrics for one MOR we have computed and intersect them with the set of metrics we want to report """ i_key = self._instance_key(instance) if self.in_compatibility_mode(instance): ...	[ "def", "_compute_needed_metrics", "(", "self", ",", "instance", ",", "available_metrics", ")", ":", "i_key", "=", "self", ".", "_instance_key", "(", "instance", ")", "if", "self", ".", "in_compatibility_mode", "(", "instance", ")", ":", "if", "instance", ".", ...	48.966667	22.033333
def rover_lat_accel(VFR_HUD, SERVO_OUTPUT_RAW): '''return lateral acceleration in m/s/s''' speed = VFR_HUD.groundspeed yaw_rate = rover_yaw_rate(VFR_HUD, SERVO_OUTPUT_RAW) accel = radians(yaw_rate) * speed return accel	[ "def", "rover_lat_accel", "(", "VFR_HUD", ",", "SERVO_OUTPUT_RAW", ")", ":", "speed", "=", "VFR_HUD", ".", "groundspeed", "yaw_rate", "=", "rover_yaw_rate", "(", "VFR_HUD", ",", "SERVO_OUTPUT_RAW", ")", "accel", "=", "radians", "(", "yaw_rate", ")", "*", "spee...	38.833333	10.833333
def setdefault(pb_or_dict, key, value): """Set the key on the object to the value if the current value is falsy. Because protobuf Messages do not distinguish between unset values and falsy ones particularly well, this method treats any falsy value (e.g. 0, empty list) as a target to be overwritten, on ...	[ "def", "setdefault", "(", "pb_or_dict", ",", "key", ",", "value", ")", ":", "if", "not", "get", "(", "pb_or_dict", ",", "key", ",", "default", "=", "None", ")", ":", "set", "(", "pb_or_dict", ",", "key", ",", "value", ")" ]	36.947368	20.789474
def get_version(self, extra=None): """ This will return a string that can be used as a prefix for django's cache key. Something like key.1 or key.1.2 If a version was not found '1' will be stored and returned as the number for that key. If extra is given a version will ...	[ "def", "get_version", "(", "self", ",", "extra", "=", "None", ")", ":", "if", "extra", ":", "key", "=", "self", ".", "_get_extra_key", "(", "extra", ")", "else", ":", "key", "=", "self", ".", "key", "v", "=", "self", ".", "_get_cache", "(", "key", ...	29.791667	20.875
def render_to_string(template, extra=None): """ Renders the given template to a string. """ from jinja2 import Template extra = extra or {} final_fqfn = find_template(template) assert final_fqfn, 'Template not found: %s' % template template_content = open(final_fqfn, 'r').read() t = ...	[ "def", "render_to_string", "(", "template", ",", "extra", "=", "None", ")", ":", "from", "jinja2", "import", "Template", "extra", "=", "extra", "or", "{", "}", "final_fqfn", "=", "find_template", "(", "template", ")", "assert", "final_fqfn", ",", "'Template ...	31.555556	11.333333
async def lookup_session(self, topic_name): """ Attempts to find the session id for a given topic http://crossbar.io/docs/Subscription-Meta-Events-and-Procedures/ """ res = await self.call("wamp.subscription.lookup", topic_name) self.log.info(res)	[ "async", "def", "lookup_session", "(", "self", ",", "topic_name", ")", ":", "res", "=", "await", "self", ".", "call", "(", "\"wamp.subscription.lookup\"", ",", "topic_name", ")", "self", ".", "log", ".", "info", "(", "res", ")" ]	36.125	16.875
def decrypt_file(filename, set_env=True, override_env=False): """ Decrypts a JSON file containing encrypted secrets. This file should contain an object mapping the key names to encrypted secrets. This encrypted file can be created using `credkeep.encrypt_file` or the commandline utility. :param filenam...	[ "def", "decrypt_file", "(", "filename", ",", "set_env", "=", "True", ",", "override_env", "=", "False", ")", ":", "data", "=", "json", ".", "load", "(", "open", "(", "filename", ")", ")", "results", "=", "{", "}", "for", "key", ",", "v", "in", "dat...	39.68	26.8
def _clean_pivot_attributes(self, model): """ Get the pivot attributes from a model. :type model: eloquent.Model """ values = {} delete_keys = [] for key, value in model.get_attributes().items(): if key.find('pivot_') == 0: values[key...	[ "def", "_clean_pivot_attributes", "(", "self", ",", "model", ")", ":", "values", "=", "{", "}", "delete_keys", "=", "[", "]", "for", "key", ",", "value", "in", "model", ".", "get_attributes", "(", ")", ".", "items", "(", ")", ":", "if", "key", ".", ...	23.368421	16.105263
def intermediates(self): """ A list of asn1crypto.x509.Certificate objects that were presented as intermediates by the server """ if self._session_context is None: self._raise_closed() if self._certificate is None: self._read_certificates() ...	[ "def", "intermediates", "(", "self", ")", ":", "if", "self", ".", "_session_context", "is", "None", ":", "self", ".", "_raise_closed", "(", ")", "if", "self", ".", "_certificate", "is", "None", ":", "self", ".", "_read_certificates", "(", ")", "return", ...	26	15.230769
def p_paramlist_single(p): """ paramlist : ID """ p[0] = [ID(p[1], value='', args=None, lineno=p.lineno(1), fname=CURRENT_FILE[-1])]	[ "def", "p_paramlist_single", "(", "p", ")", ":", "p", "[", "0", "]", "=", "[", "ID", "(", "p", "[", "1", "]", ",", "value", "=", "''", ",", "args", "=", "None", ",", "lineno", "=", "p", ".", "lineno", "(", "1", ")", ",", "fname", "=", "CURR...	31	7.2
def convert_disp_formula_elements(self): """ <disp-formula> elements must be converted to conforming elements """ for disp in self.main.getroot().findall('.//disp-formula'): #find label element label_el = disp.find('label') graphic_el = disp.find('grap...	[ "def", "convert_disp_formula_elements", "(", "self", ")", ":", "for", "disp", "in", "self", ".", "main", ".", "getroot", "(", ")", ".", "findall", "(", "'.//disp-formula'", ")", ":", "#find label element", "label_el", "=", "disp", ".", "find", "(", "'label'"...	47.152174	13.76087
def _resource_deletion(resource): """ Recalculate consumption details and save resource details """ if resource.__class__ not in CostTrackingRegister.registered_resources: return new_configuration = {} price_estimate = models.PriceEstimate.update_resource_estimate(resource, new_configuration) ...	[ "def", "_resource_deletion", "(", "resource", ")", ":", "if", "resource", ".", "__class__", "not", "in", "CostTrackingRegister", ".", "registered_resources", ":", "return", "new_configuration", "=", "{", "}", "price_estimate", "=", "models", ".", "PriceEstimate", ...	49.285714	20.571429
def default_subprocess_runner(cmd, cwd=None, extra_environ=None): """The default method of calling the wrapper subprocess.""" env = os.environ.copy() if extra_environ: env.update(extra_environ) check_call(cmd, cwd=cwd, env=env)	[ "def", "default_subprocess_runner", "(", "cmd", ",", "cwd", "=", "None", ",", "extra_environ", "=", "None", ")", ":", "env", "=", "os", ".", "environ", ".", "copy", "(", ")", "if", "extra_environ", ":", "env", ".", "update", "(", "extra_environ", ")", ...	35.142857	15.285714
def task(self, total: int, name=None, message=None): """Wrap code into a begin and end call on this monitor""" self.begin(total, name, message) try: yield self finally: self.done()	[ "def", "task", "(", "self", ",", "total", ":", "int", ",", "name", "=", "None", ",", "message", "=", "None", ")", ":", "self", ".", "begin", "(", "total", ",", "name", ",", "message", ")", "try", ":", "yield", "self", "finally", ":", "self", ".",...	32.857143	14.142857
def __is_current(filepath): '''Checks whether file is current''' if not __DOWNLOAD_PARAMS['auto_update']: return True if not os.path.isfile(filepath): return False return datetime.datetime.utcfromtimestamp(os.path.getmtime(filepath)) \ > __get_last_update_time()	[ "def", "__is_current", "(", "filepath", ")", ":", "if", "not", "__DOWNLOAD_PARAMS", "[", "'auto_update'", "]", ":", "return", "True", "if", "not", "os", ".", "path", ".", "isfile", "(", "filepath", ")", ":", "return", "False", "return", "datetime", ".", ...	29.5	18.3
def experiments_predictions_get(self, resource_url): """Get handle for model run resource at given Url. Parameters ---------- resource_url : string Url for model run resource at SCO-API Returns ------- scoserv.ModelRunHandle Handle for lo...	[ "def", "experiments_predictions_get", "(", "self", ",", "resource_url", ")", ":", "# Get resource directory, Json representation, active flag, and cache id", "obj_dir", ",", "obj_json", ",", "is_active", ",", "cache_id", "=", "self", ".", "get_object", "(", "resource_url", ...	37.652174	17.782609
def natural_name(self) -> str: """Valid python identifier representation of the expession.""" name = self.expression.strip() for op in operators: name = name.replace(op, operator_to_identifier[op]) return wt_kit.string2identifier(name)	[ "def", "natural_name", "(", "self", ")", "->", "str", ":", "name", "=", "self", ".", "expression", ".", "strip", "(", ")", "for", "op", "in", "operators", ":", "name", "=", "name", ".", "replace", "(", "op", ",", "operator_to_identifier", "[", "op", ...	45.666667	8.666667
def find_ab_params(spread, min_dist): """Fit a, b params for the differentiable curve used in lower dimensional fuzzy simplicial complex construction. We want the smooth curve (from a pre-defined family with simple gradient) that best matches an offset exponential decay. """ def curve(x, a, b):...	[ "def", "find_ab_params", "(", "spread", ",", "min_dist", ")", ":", "def", "curve", "(", "x", ",", "a", ",", "b", ")", ":", "return", "1.0", "/", "(", "1.0", "+", "a", "", "x", "", "(", "2", "", "b", ")", ")", "xv", "=", "np", ".", "lins...	37.5625	14.9375
def pdf2png(file_in, file_out): """ Uses `ImageMagick <http://www.imagemagick.org/>`_ to convert an input file_in pdf to a file_out png. (Untested with other formats.) Parameters ---------- file_in : str The path to the pdf file to be converted. file_out : str The path to t...	[ "def", "pdf2png", "(", "file_in", ",", "file_out", ")", ":", "command", "=", "'convert -display 37.5 {} -resize 600 -append {}'", ".", "format", "(", "file_in", ",", "file_out", ")", "_subprocess", ".", "call", "(", "_shlex", ".", "split", "(", "command", ")", ...	33.928571	25.214286
def create_application(self, team_id, name, url=None): """ Creates an application under a given team. :param team_id: Team identifier. :param name: The name of the new application being created. :param url: The url of where the application is located. """ params =...	[ "def", "create_application", "(", "self", ",", "team_id", ",", "name", ",", "url", "=", "None", ")", ":", "params", "=", "{", "'name'", ":", "name", "}", "if", "url", ":", "params", "[", "'url'", "]", "=", "url", "return", "self", ".", "_request", ...	42.727273	15.818182
def delete(self): """ Remove the document and all of its bundles from ProvStore. .. warning:: Cannot be undone. """ if self.abstract: raise AbstractDocumentException() self._api.delete_document(self.id) self._id = None return True	[ "def", "delete", "(", "self", ")", ":", "if", "self", ".", "abstract", ":", "raise", "AbstractDocumentException", "(", ")", "self", ".", "_api", ".", "delete_document", "(", "self", ".", "id", ")", "self", ".", "_id", "=", "None", "return", "True" ]	21.928571	18.642857
def read_atoms(fn, cycfn=None, pos_only=False, conv=1.0): """ Read atom information from an atoms.dat file (i.e., tblmd, MDCORE input file) """ f = paropen(fn, "r") l = f.readline().lstrip() while len(l) > 0 and ( l[0] == '#' or l[0] == '<' ): l = f.readline().lstrip() n_atoms = in...	[ "def", "read_atoms", "(", "fn", ",", "cycfn", "=", "None", ",", "pos_only", "=", "False", ",", "conv", "=", "1.0", ")", ":", "f", "=", "paropen", "(", "fn", ",", "\"r\"", ")", "l", "=", "f", ".", "readline", "(", ")", ".", "lstrip", "(", ")", ...	28.300813	20.593496
def fetch_request_ids(item_ids, cls, attr_name, verification_list=None): """Return a list of cls instances for all the ids provided in item_ids. :param item_ids: The list of ids to fetch objects for :param cls: The class to fetch the ids from :param attr_name: The name of the attribute for exception pu...	[ "def", "fetch_request_ids", "(", "item_ids", ",", "cls", ",", "attr_name", ",", "verification_list", "=", "None", ")", ":", "if", "not", "item_ids", ":", "return", "[", "]", "items", "=", "[", "]", "for", "item_id", "in", "item_ids", ":", "item", "=", ...	37.681818	19.590909
def add_result(self, result): """ Adds the result of a completed job to the result list, then decrements the active job count. If the job set is already complete, the result is simply discarded instead. """ if self._active_jobs == 0: return self._res...	[ "def", "add_result", "(", "self", ",", "result", ")", ":", "if", "self", ".", "_active_jobs", "==", "0", ":", "return", "self", ".", "_results", ".", "add", "(", "result", ")", "self", ".", "_active_jobs", "-=", "1", "if", "self", ".", "_active_jobs", ...	29.571429	17.285714
def _parse_chance(self, element): """ Parse a chance element :param element: The XML Element object :type element: etree._Element """ try: chance = float(element.text) except (ValueError, TypeError, AttributeError): self._log.warn('Invalid...	[ "def", "_parse_chance", "(", "self", ",", "element", ")", ":", "try", ":", "chance", "=", "float", "(", "element", ".", "text", ")", "except", "(", "ValueError", ",", "TypeError", ",", "AttributeError", ")", ":", "self", ".", "_log", ".", "warn", "(", ...	36.842105	19.578947
def LargestComponent(self): """ Returns (i, val) where i is the component index (0 - 2) which has largest absolute value and val is the value of the component. """ if abs(self.x) > abs(self.y): if abs(self.x) > abs(self.z): return (0, self.x) else: return (2, self.z) ...	[ "def", "LargestComponent", "(", "self", ")", ":", "if", "abs", "(", "self", ".", "x", ")", ">", "abs", "(", "self", ".", "y", ")", ":", "if", "abs", "(", "self", ".", "x", ")", ">", "abs", "(", "self", ".", "z", ")", ":", "return", "(", "0"...	26	14.375
def parse( source: SourceType, no_location=False, experimental_fragment_variables=False ) -> DocumentNode: """Given a GraphQL source, parse it into a Document. Throws GraphQLError if a syntax error is encountered. By default, the parser creates AST nodes that know the location in the source that t...	[ "def", "parse", "(", "source", ":", "SourceType", ",", "no_location", "=", "False", ",", "experimental_fragment_variables", "=", "False", ")", "->", "DocumentNode", ":", "if", "isinstance", "(", "source", ",", "str", ")", ":", "source", "=", "Source", "(", ...	36.060606	27.181818
def __scanPlugins(self): """Scanning local plugin directories and third-party plugin packages. :returns: No return, but self.__plugins will be updated :raises: PluginError: raises an exception, maybe CSSLoadError, VersionError, based PluginError """ self.logger.info("Initializa...	[ "def", "__scanPlugins", "(", "self", ")", ":", "self", ".", "logger", ".", "info", "(", "\"Initialization Plugins Start, local plugins path: %s, third party plugins: %s\"", "%", "(", "self", ".", "plugins_abspath", ",", "self", ".", "plugin_packages", ")", ")", "#: Lo...	63.482759	38.448276
def add_global_response_interceptor(self, response_interceptor): # type: (AbstractResponseInterceptor) -> None """Register input to the global response interceptors list. :param response_interceptor: Response Interceptor instance to be registered. :type response_interceptor:...	[ "def", "add_global_response_interceptor", "(", "self", ",", "response_interceptor", ")", ":", "# type: (AbstractResponseInterceptor) -> None", "if", "response_interceptor", "is", "None", ":", "raise", "RuntimeConfigException", "(", "\"Valid Response Interceptor instance to be provi...	43.166667	20.277778
def neighbors(self): ''' Returns the left and right neighbors as Word instance. If the word is the first one in the sentence only the right neighbor is returned and vice versa. ''' if len(self._sentence) == 1: return { 'left': None, 'ri...	[ "def", "neighbors", "(", "self", ")", ":", "if", "len", "(", "self", ".", "_sentence", ")", "==", "1", ":", "return", "{", "'left'", ":", "None", ",", "'right'", ":", "None", "}", "else", ":", "p", "=", "self", ".", "_position", "if", "-", "1", ...	34.966667	17.366667
def fix_module(job): """ Fix for tasks without a module. Provides backwards compatibility with < 0.1.5 """ modules = settings.RQ_JOBS_MODULE if not type(modules) == tuple: modules = [modules] for module in modules: try: module_match = importlib.import_module(module) ...	[ "def", "fix_module", "(", "job", ")", ":", "modules", "=", "settings", ".", "RQ_JOBS_MODULE", "if", "not", "type", "(", "modules", ")", "==", "tuple", ":", "modules", "=", "[", "modules", "]", "for", "module", "in", "modules", ":", "try", ":", "module_...	31.0625	15.4375
def toggle_codes(self, event): """ Show/hide method code explanation widget on button click """ btn = event.GetEventObject() if btn.Label == 'Show method codes': self.code_msg_boxsizer.ShowItems(True) btn.SetLabel('Hide method codes') else: ...	[ "def", "toggle_codes", "(", "self", ",", "event", ")", ":", "btn", "=", "event", ".", "GetEventObject", "(", ")", "if", "btn", ".", "Label", "==", "'Show method codes'", ":", "self", ".", "code_msg_boxsizer", ".", "ShowItems", "(", "True", ")", "btn", "....	35.416667	9.583333
async def restart(request: web.Request) -> web.Response: """ Restart the robot. Blocks while the restart lock is held. """ async with request.app[RESTART_LOCK_NAME]: asyncio.get_event_loop().call_later(1, _do_restart) return web.json_response({'message': 'Restarting in 1s'}, ...	[ "async", "def", "restart", "(", "request", ":", "web", ".", "Request", ")", "->", "web", ".", "Response", ":", "async", "with", "request", ".", "app", "[", "RESTART_LOCK_NAME", "]", ":", "asyncio", ".", "get_event_loop", "(", ")", ".", "call_later", "(",...	37.444444	11.555556
def read_10xgenomics(cls, tarball_fpath: str, prefix: str, use_ensembl_ids: bool = False): """Read a 10X genomics compressed tarball containing expression data. Note: common prefix patterns: - "filtered_gene_bc_matrices/[annotations]/" - "filtered_matric...	[ "def", "read_10xgenomics", "(", "cls", ",", "tarball_fpath", ":", "str", ",", "prefix", ":", "str", ",", "use_ensembl_ids", ":", "bool", "=", "False", ")", ":", "_LOGGER", ".", "info", "(", "'Reading file: %s'", ",", "tarball_fpath", ")", "with", "tarfile", ...	36.878049	19.439024
def credential_share_simulate(self, cred_id, *user_ids): """Shares a given credential to the specified Users. :param cred_id: Credential ID :param user_ids: List of User IDs """ return self.raw_query("credential", "shareSimulate", data={ 'id': cred_id, 'u...	[ "def", "credential_share_simulate", "(", "self", ",", "cred_id", ",", "*", "user_ids", ")", ":", "return", "self", ".", "raw_query", "(", "\"credential\"", ",", "\"shareSimulate\"", ",", "data", "=", "{", "'id'", ":", "cred_id", ",", "'users'", ":", "[", "...	35.9	14.2
def from_string(cls, token_string): """ `token_string` should be the string representation from the server. """ # unhexlify works fine with unicode input in everythin but pypy3, where it Raises "TypeError: 'str' does not support the buffer interface" if isinstance(token_string, six.text_type): ...	[ "def", "from_string", "(", "cls", ",", "token_string", ")", ":", "# unhexlify works fine with unicode input in everythin but pypy3, where it Raises \"TypeError: 'str' does not support the buffer interface\"", "if", "isinstance", "(", "token_string", ",", "six", ".", "text_type", ")...	64.285714	20.428571
async def commit( request: web.Request, session: UpdateSession) -> web.Response: """ Serves /update/:session/commit """ if session.stage != Stages.DONE: return web.json_response( data={'error': 'not-ready', 'message': f'System is not ready to commit the update ' ...	[ "async", "def", "commit", "(", "request", ":", "web", ".", "Request", ",", "session", ":", "UpdateSession", ")", "->", "web", ".", "Response", ":", "if", "session", ".", "stage", "!=", "Stages", ".", "DONE", ":", "return", "web", ".", "json_response", ...	37	16.473684

def runScript(self, scriptname, additional_environment=None): ''' Run the specified script from the scripts section of the module.json file in the directory of this module. ''' import subprocess import shlex command = self.getScript(scriptname) if command is ...

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def batch_update(self, values, w=1): """ Update the t-digest with an iterable of values. This assumes all points have the same weight. """ for x in values: self.update(x, w) self.compress() return

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def do_tagg(self, arglist: List[str]): """version of creating an html tag using arglist instead of argparser""" if len(arglist) >= 2: tag = arglist[0] content = arglist[1:] self.poutput('<{0}>{1}</{0}>'.format(tag, ' '.join(content))) else: self.pe...

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def prepare_new_layer(self, input_layer): """Prepare new layer for the output layer. :param input_layer: Vector layer. :type input_layer: QgsVectorLayer :return: New memory layer duplicated from input_layer. :rtype: QgsVectorLayer """ # create memory layer ...

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def cylindrical_histogram(data=None, rho_bins="numpy", phi_bins=16, z_bins="numpy", transformed=False, *args, **kwargs): """Facade construction function for the CylindricalHistogram. """ dropna = kwargs.pop("dropna", True) data = _prepare_data(data, transformed=transformed, klass=CylindricalHistogram,...

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def rapl_read(): """ Read power stats and return dictionary""" basenames = glob.glob('/sys/class/powercap/intel-rapl:*/') basenames = sorted(set({x for x in basenames})) pjoin = os.path.join ret = list() for path in basenames: name = None try: name = cat(pjoin(path, ...

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def mark_all_read(request): """ Mark all messages as read (i.e. delete from inbox) for current logged in user """ from .settings import stored_messages_settings backend = stored_messages_settings.STORAGE_BACKEND() backend.inbox_purge(request.user) return Response({"message": "All messages re...

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def get_importable_modules(folder): """Find all module files in the given folder that end with '.py' and don't start with an underscore. @return module names @rtype: iterator of string """ for fname in os.listdir(folder): if fname.endswith('.py') and not fname.startswith('_'): ...

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36.666667

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def publishToRoom(self, roomId, name, data, userList=None): """ Publish to given room data submitted """ if userList is None: userList = self.getRoom(roomId) # Publish data to all room users logging.debug("%s: broadcasting (name: %s, data: %s, number of users: %s)" % (self._...

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def ComputeRoot(hashes): """ Compute the root hash. Args: hashes (list): the list of hashes to build the root from. Returns: bytes: the root hash. """ if not len(hashes): raise Exception('Hashes must have length') if len(hashe...

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def _get_by(key, val, l): """ Out of list *l* return all elements that have *key=val* This comes in handy when you are working with aggregated/bucketed queries """ return [x for x in l if _check_value_recursively(key, val, x)]

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40.166667

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def __request(self, method, url, request_args, headers=None, stream=False): """__request. make the actual request. This method is called by the request method in case of 'regular' API-calls. Or indirectly by the__stream_request method if it concerns a 'streaming' call. """ ...

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def build_summary_table(summary, idx, is_fragment_root, indent_level, output): """Direct translation of Coordinator::PrintExecSummary() to recursively build a list of rows of summary statistics, one per exec node summary: the TExecSummary object that contains all the summary data idx: the index of the...

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def tobuf(self, format=DEFAULT_FORMAT, encoding=ENCODING, errors="surrogateescape"): """Return a tar header as a string of 512 byte blocks. """ info = self.get_info() if format == USTAR_FORMAT: return self.create_ustar_header(info, encoding, errors) elif format == GN...

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41.307692

16.461538

def get_contributors(gh, repo_id): """Get list of contributors to a repository.""" try: # FIXME: Use `github3.Repository.contributors` to get this information contrib_url = gh.repository_with_id(repo_id).contributors_url r = requests.get(contrib_url) if r.status_code == 200: ...

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39.206897

19.172414

def put(self, urls=None, **overrides): """Sets the acceptable HTTP method to PUT""" if urls is not None: overrides['urls'] = urls return self.where(accept='PUT', **overrides)

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def get_me(self) -> "pyrogram.User": """A simple method for testing your authorization. Requires no parameters. Returns: Basic information about the user or bot in form of a :obj:`User` object Raises: :class:`RPCError <pyrogram.RPCError>` in case of a Telegram RPC error...

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def timezone(name, extended=True): # type: (Union[str, int]) -> _Timezone """ Return a Timezone instance given its name. """ if isinstance(name, int): return fixed_timezone(name) if name.lower() == "utc": return UTC if name in _tz_cache: return _tz_cache[name] tz ...

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def gettrace(self, burn=0, thin=1, chain=-1, slicing=None): """Return the trace (last by default). :Parameters: burn : integer The number of transient steps to skip. thin : integer Keep one in thin. chain : integer The index of the chain to fetch. I...

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31.37931

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def create(self): """ Creates a new record for a domain. Args: type (str): The type of the DNS record (e.g. A, CNAME, TXT). name (str): The host name, alias, or service being defined by the record. data (int): Variable data depending on record...

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def reset(self, source): """ Reset scanner's state. :param source: Source for parsing """ self.tokens = [] self.source = source self.pos = 0

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20.222222

16.111111

def make(directory): """Makes a RAS Machine directory""" if os.path.exists(directory): if os.path.isdir(directory): click.echo('Directory already exists') else: click.echo('Path exists and is not a directory') sys.exit() os.makedirs(directory) os.mkdir(o...

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31.076923

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def maxind_numba(block): """ filter for indels """ ## remove terminal edges inds = 0 for row in xrange(block.shape[0]): where = np.where(block[row] != 45)[0] if len(where) == 0: obs = 100 else: left = np.min(where) right = np.max(where) ...

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27.666667

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def disable(self, msgid, scope="package", line=None, ignore_unknown=False): """don't output message of the given id""" self._set_msg_status( msgid, enable=False, scope=scope, line=line, ignore_unknown=ignore_unknown ) self._register_by_id_managed_msg(msgid, line)

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50.333333

22.666667

def get(self, *args, **kwargs): """ This renders the form or, if needed, does the http redirects. """ step_url = kwargs.get('step', None) if step_url is None: if 'reset' in self.request.GET: self.storage.reset() self.storage.current_ste...

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40.76087

15.5

def get_mean_and_stddevs(self, sites, rup, dists, imt, stddev_types): """ See :meth:`superclass method <.base.GroundShakingIntensityModel.get_mean_and_stddevs>` for spec of input and result values. Implement equation 1, page 20. """ # compute median PGA on rock, ...

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37.956522

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def get_object(self, queryset=None): """ get privacy settings of current user """ try: obj = self.get_queryset() except self.model.DoesNotExist: raise Http404() self.check_object_permissions(self.request, obj) return obj

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34.625

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def add_to_queue(self, series): """Add a series to the queue @param crunchyroll.models.Series series @return bool """ result = self._android_api.add_to_queue(series_id=series.series_id) return result

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30.125

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def _warcprox_opts(self, args): ''' Takes args as produced by the argument parser built by _build_arg_parser and builds warcprox arguments object suitable to pass to warcprox.main.init_controller. Copies some arguments, renames some, populates some with defaults appropriate for b...

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45.59375

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def parse_relation(obj: dict) -> BioCRelation: """Deserialize a dict obj to a BioCRelation object""" rel = BioCRelation() rel.id = obj['id'] rel.infons = obj['infons'] for node in obj['nodes']: rel.add_node(BioCNode(node['refid'], node['role'])) return rel

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def create_stash(self, payload, path=None): """ Create a stash. (JSON document) """ if path: self._request('POST', '/stashes/{}'.format(path), json=payload) else: self._request('POST', '/stashes', json=payload) return True

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def qsnorm(p): """ rational approximation for x where q(x)=d, q being the cumulative normal distribution function. taken from Abramowitz & Stegun p. 933 |error(x)| < 4.5*10**-4 """ d = p if d < 0. or d > 1.: print('d not in (1,1) ') sys.exit() x = 0. if (d - 0.5) > 0:...

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def list_image(root, recursive, exts): """Traverses the root of directory that contains images and generates image list iterator. Parameters ---------- root: string recursive: bool exts: string Returns ------- image iterator that contains all the image under the specified path ...

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def set(self, val): """Set the value""" import time now = time.time() expected_value = [] new_val = {} new_val['timestamp'] = now if self._value != None: new_val['last_value'] = self._value expected_value = ['current_value', str(self._value...

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34.473684

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def bootstrap_repl(which_ns: str) -> types.ModuleType: """Bootstrap the REPL with a few useful vars and returned the bootstrapped module so it's functions can be used by the REPL command.""" repl_ns = runtime.Namespace.get_or_create(sym.symbol("basilisp.repl")) ns = runtime.Namespace.get_or_create(s...

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def parse_options(self, kwargs): """Validate the provided kwargs and return options as json string.""" kwargs = {camelize(key): value for key, value in kwargs.items()} for key in kwargs.keys(): assert key in self.valid_options, ( 'The option {} is not in the available...

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48.384615

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def get_default_jprops_parsers(parser_finder: ParserFinder, conversion_finder: ConversionFinder) -> List[AnyParser]: """ Utility method to return the default parsers able to parse a dictionary from a properties file. :return: """ return [SingleFileParserFunction(parser_function=read_dict_from_proper...

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62.466667

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def copen(filepath, flag='r', encoding=None): """ FIXME: How to test this ? >>> c = copen(__file__) >>> c is not None True """ if encoding is None: encoding = locale.getdefaultlocale()[1] return codecs.open(filepath, flag, encoding)

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20.230769

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def venue_stocks(self): """List the stocks available for trading on the venue. https://starfighter.readme.io/docs/list-stocks-on-venue """ url = urljoin(self.base_url, 'venues/{0}/stocks'.format(self.venue)) return self.session.get(url).json()

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39.714286

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def p_subidentifiers_defval(self, p): """subidentifiers_defval : subidentifiers_defval subidentifier_defval | subidentifier_defval""" n = len(p) if n == 3: p[0] = ('subidentifiers_defval', p[1][1] + [p[2]]) elif n == 2: p[0] = ('su...

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42.75

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def add_update_topology_db(self, **params): """Add or update an entry to the topology DB. """ topo_dict = params.get('columns') session = db.get_session() host = topo_dict.get('host') protocol_interface = topo_dict.get('protocol_interface') with session.begin(subtransacti...

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55.95

18.025

def start(self): """ Start the installation wizard """ self.log.debug('Starting the installation process') self.browser.open(self.url) self.system_check()

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21.777778

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def _validate_no_rels(param, rels): """ Ensure the sortable field is not on a relationship """ if param.field in rels: raise InvalidQueryParams(**{ 'detail': 'The sort query param value of "%s" is not ' 'supported. Sorting on relationships is not ' ...

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38.363636

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def get_filtered_devices( self, model_name, device_types="upnp:rootdevice", timeout=2 ): """ returns a dict of devices that contain the given model name """ # get list of all UPNP devices in the network upnp_devices = self.discover_upnp_devices(st=device_types) ...

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def managed_wrapper_class_factory(zos_obj): """Creates and returns a wrapper class of a ZOS object, exposing the ZOS objects methods and propertis, and patching custom specialized attributes @param zos_obj: ZOS API Python COM object """ cls_name = repr(zos_obj).split()[0].split('.')[-1] disp...

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41.769231

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def _max_lengths(): """ The length of the largest magic string + its offset""" max_header_length = max([len(x.byte_match) + x.offset for x in magic_header_array]) max_footer_length = max([len(x.byte_match) + abs(x.offset) for x in magic_footer_array]...

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51.857143

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def _serializeParamsUniq_eval(parentUnit, obj, isDeclaration, priv): """ Decide to serialize only objs with uniq parameters and class :param priv: private data for this function ({frozen_params: obj}) :return: tuple (do serialize this object, next priv) """ params = paramsToValTuple(p...

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24.730769

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def on_message(self, message): """Message from the backend has been received. :param message: Message string received. """ work_unit = SelenolMessage(message) request_id = work_unit.request_id if message['reason'] == ['selenol', 'request']: try: ...

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34.837838

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def __parse(self) -> object: """Selects the appropriate method to decode next bencode element and returns the result.""" char = self.data[self.idx: self.idx + 1] if char in [b'1', b'2', b'3', b'4', b'5', b'6', b'7', b'8', b'9', b'0']: str_len = int(self.__read_to(b':')) r...

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47.611111

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def get_matching_service_template_file(service_name, template_files): """ Return the template file that goes with the given service name, or return None if there's no match. Subservices return the parent service's file. """ # If this is a subservice, use the parent service's template service_na...

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44.1

16.1

def resource_property(klass, name, **kwargs): """Builds a resource object property.""" klass.PROPERTIES[name] = kwargs def getter(self): return getattr(self, '_%s' % name, kwargs.get('default', None)) if kwargs.get('readonly', False): setattr(klass, name, property(getter)) else: ...

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33.846154

16

def get_parameter_value(self, parameter, from_cache=True, timeout=10): """ Retrieve the current value of the specified parameter. :param str parameter: Either a fully-qualified XTCE name or an alias in the format ``NAMESPACE/NAME``. :param bool from_cache: ...

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47.033333

20.1

def set_skips(self, skips): """Set the line skips.""" skips.sort() internal_assert(lambda: len(set(skips)) == len(skips), "duplicate line skip(s) in skips", skips) self.skips = skips

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42

22.2

def del_cells(self, name): """Implementation of cells deletion ``del space.name`` where name is a cells, or ``del space.cells['name']`` """ if name in self.cells: cells = self.cells[name] self.cells.del_item(name) self.inherit() se...

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29.2

15.9

def get_port_profile_for_intf_output_has_more(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") get_port_profile_for_intf = ET.Element("get_port_profile_for_intf") config = get_port_profile_for_intf output = ET.SubElement(get_port_profile_for_intf,...

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42.5

14.416667

def is_token_expired(self, margin=None): """Determine if the token is expired. :returns: ``True`` if the token is expired, ``False`` if not, and ``None`` if there is no token set. :param margin: A security time margin in seconds before real expiration. ...

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34.833333

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def get_alpha_or_number(number, template): """Returns an Alphanumber that represents the number passed in, expressed as defined in the template. Otherwise, returns the number """ match = re.match(r".*\{alpha:(\d+a\d+d)\}$", template.strip()) if match and match.groups(): format = match.groups...

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41.666667

9.666667

def _get_mid_and_update_msg(self, msg, use_mid): """Get message ID for current request and assign to msg.mid if needed. Parameters ---------- msg : katcp.Message ?request message use_mid : bool or None If msg.mid is None, a new message ID will be created. msg.mid will b...

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32.7

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def get_default_object_parsers(parser_finder: ParserFinder, conversion_finder: ConversionFinder) -> List[AnyParser]: """ Utility method to return the default parsers able to parse an object from a file. Note that MultifileObjectParser is not provided in this list, as it is already added in a hardcoded way i...

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53.307692

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def call_script(self, key, tmp_key, key_type, start, end, exclude, *args): """Call the lua scripts with given keys and args Parameters ----------- key: str The key of the index sorted-set tmp_key: str The final temporary key where to store the filtered pr...

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39.655172

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def get_leaf_children(gos_user, go2obj_arg): """Find all the GO descendants under all user GO IDs. Return leaf-level GO IDs.""" childgoid2obj = {} for goid_usr in gos_user: goobj_usr = go2obj_arg[goid_usr] fill_childgoid2obj(childgoid2obj, goobj_usr) return set(go for go, o in childgoid2...

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49.142857

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def unitary_operator(state_vector): """ Uses QR factorization to create a unitary operator that can encode an arbitrary normalized vector into the wavefunction of a quantum state. Assumes that the state of the input qubits is to be expressed as .. math:: (1, 0, \\ldots, 0)^T :par...

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30.891892

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def read_csv(self, dtype=False, parse_dates=True, *args, **kwargs): """Fetch the target and pass through to pandas.read_csv Don't provide the first argument of read_csv(); it is supplied internally. """ import pandas t = self.resolved_url.get_resource().get_target() k...

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33

27.153846

def _compute_needed_metrics(self, instance, available_metrics): """ Compare the available metrics for one MOR we have computed and intersect them with the set of metrics we want to report """ i_key = self._instance_key(instance) if self.in_compatibility_mode(instance): ...

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48.966667

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def rover_lat_accel(VFR_HUD, SERVO_OUTPUT_RAW): '''return lateral acceleration in m/s/s''' speed = VFR_HUD.groundspeed yaw_rate = rover_yaw_rate(VFR_HUD, SERVO_OUTPUT_RAW) accel = radians(yaw_rate) * speed return accel

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38.833333

10.833333

def setdefault(pb_or_dict, key, value): """Set the key on the object to the value if the current value is falsy. Because protobuf Messages do not distinguish between unset values and falsy ones particularly well, this method treats any falsy value (e.g. 0, empty list) as a target to be overwritten, on ...

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36.947368

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def get_version(self, extra=None): """ This will return a string that can be used as a prefix for django's cache key. Something like key.1 or key.1.2 If a version was not found '1' will be stored and returned as the number for that key. If extra is given a version will ...

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29.791667

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def render_to_string(template, extra=None): """ Renders the given template to a string. """ from jinja2 import Template extra = extra or {} final_fqfn = find_template(template) assert final_fqfn, 'Template not found: %s' % template template_content = open(final_fqfn, 'r').read() t = ...

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31.555556

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async def lookup_session(self, topic_name): """ Attempts to find the session id for a given topic http://crossbar.io/docs/Subscription-Meta-Events-and-Procedures/ """ res = await self.call("wamp.subscription.lookup", topic_name) self.log.info(res)

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36.125

16.875

def decrypt_file(filename, set_env=True, override_env=False): """ Decrypts a JSON file containing encrypted secrets. This file should contain an object mapping the key names to encrypted secrets. This encrypted file can be created using `credkeep.encrypt_file` or the commandline utility. :param filenam...

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39.68

26.8

def _clean_pivot_attributes(self, model): """ Get the pivot attributes from a model. :type model: eloquent.Model """ values = {} delete_keys = [] for key, value in model.get_attributes().items(): if key.find('pivot_') == 0: values[key...

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def intermediates(self): """ A list of asn1crypto.x509.Certificate objects that were presented as intermediates by the server """ if self._session_context is None: self._raise_closed() if self._certificate is None: self._read_certificates() ...

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def p_paramlist_single(p): """ paramlist : ID """ p[0] = [ID(p[1], value='', args=None, lineno=p.lineno(1), fname=CURRENT_FILE[-1])]

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def convert_disp_formula_elements(self): """ <disp-formula> elements must be converted to conforming elements """ for disp in self.main.getroot().findall('.//disp-formula'): #find label element label_el = disp.find('label') graphic_el = disp.find('grap...

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def _resource_deletion(resource): """ Recalculate consumption details and save resource details """ if resource.__class__ not in CostTrackingRegister.registered_resources: return new_configuration = {} price_estimate = models.PriceEstimate.update_resource_estimate(resource, new_configuration) ...

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def default_subprocess_runner(cmd, cwd=None, extra_environ=None): """The default method of calling the wrapper subprocess.""" env = os.environ.copy() if extra_environ: env.update(extra_environ) check_call(cmd, cwd=cwd, env=env)

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def task(self, total: int, name=None, message=None): """Wrap code into a begin and end call on this monitor""" self.begin(total, name, message) try: yield self finally: self.done()

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def __is_current(filepath): '''Checks whether file is current''' if not __DOWNLOAD_PARAMS['auto_update']: return True if not os.path.isfile(filepath): return False return datetime.datetime.utcfromtimestamp(os.path.getmtime(filepath)) \ > __get_last_update_time()

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def experiments_predictions_get(self, resource_url): """Get handle for model run resource at given Url. Parameters ---------- resource_url : string Url for model run resource at SCO-API Returns ------- scoserv.ModelRunHandle Handle for lo...

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def natural_name(self) -> str: """Valid python identifier representation of the expession.""" name = self.expression.strip() for op in operators: name = name.replace(op, operator_to_identifier[op]) return wt_kit.string2identifier(name)

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def find_ab_params(spread, min_dist): """Fit a, b params for the differentiable curve used in lower dimensional fuzzy simplicial complex construction. We want the smooth curve (from a pre-defined family with simple gradient) that best matches an offset exponential decay. """ def curve(x, a, b):...

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def pdf2png(file_in, file_out): """ Uses `ImageMagick <http://www.imagemagick.org/>`_ to convert an input *file_in* pdf to a *file_out* png. (Untested with other formats.) Parameters ---------- file_in : str The path to the pdf file to be converted. file_out : str The path to t...

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def create_application(self, team_id, name, url=None): """ Creates an application under a given team. :param team_id: Team identifier. :param name: The name of the new application being created. :param url: The url of where the application is located. """ params =...

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def delete(self): """ Remove the document and all of its bundles from ProvStore. .. warning:: Cannot be undone. """ if self.abstract: raise AbstractDocumentException() self._api.delete_document(self.id) self._id = None return True

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def read_atoms(fn, cycfn=None, pos_only=False, conv=1.0): """ Read atom information from an atoms.dat file (i.e., tblmd, MDCORE input file) """ f = paropen(fn, "r") l = f.readline().lstrip() while len(l) > 0 and ( l[0] == '#' or l[0] == '<' ): l = f.readline().lstrip() n_atoms = in...

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def fetch_request_ids(item_ids, cls, attr_name, verification_list=None): """Return a list of cls instances for all the ids provided in item_ids. :param item_ids: The list of ids to fetch objects for :param cls: The class to fetch the ids from :param attr_name: The name of the attribute for exception pu...

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def add_result(self, result): """ Adds the result of a completed job to the result list, then decrements the active job count. If the job set is already complete, the result is simply discarded instead. """ if self._active_jobs == 0: return self._res...

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def _parse_chance(self, element): """ Parse a chance element :param element: The XML Element object :type element: etree._Element """ try: chance = float(element.text) except (ValueError, TypeError, AttributeError): self._log.warn('Invalid...

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def LargestComponent(self): """ Returns (i, val) where i is the component index (0 - 2) which has largest absolute value and val is the value of the component. """ if abs(self.x) > abs(self.y): if abs(self.x) > abs(self.z): return (0, self.x) else: return (2, self.z) ...

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def parse( source: SourceType, no_location=False, experimental_fragment_variables=False ) -> DocumentNode: """Given a GraphQL source, parse it into a Document. Throws GraphQLError if a syntax error is encountered. By default, the parser creates AST nodes that know the location in the source that t...

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def __scanPlugins(self): """Scanning local plugin directories and third-party plugin packages. :returns: No return, but self.__plugins will be updated :raises: PluginError: raises an exception, maybe CSSLoadError, VersionError, based PluginError """ self.logger.info("Initializa...

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def add_global_response_interceptor(self, response_interceptor): # type: (AbstractResponseInterceptor) -> None """Register input to the global response interceptors list. :param response_interceptor: Response Interceptor instance to be registered. :type response_interceptor:...

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def neighbors(self): ''' Returns the left and right neighbors as Word instance. If the word is the first one in the sentence only the right neighbor is returned and vice versa. ''' if len(self._sentence) == 1: return { 'left': None, 'ri...

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def fix_module(job): """ Fix for tasks without a module. Provides backwards compatibility with < 0.1.5 """ modules = settings.RQ_JOBS_MODULE if not type(modules) == tuple: modules = [modules] for module in modules: try: module_match = importlib.import_module(module) ...

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def toggle_codes(self, event): """ Show/hide method code explanation widget on button click """ btn = event.GetEventObject() if btn.Label == 'Show method codes': self.code_msg_boxsizer.ShowItems(True) btn.SetLabel('Hide method codes') else: ...

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async def restart(request: web.Request) -> web.Response: """ Restart the robot. Blocks while the restart lock is held. """ async with request.app[RESTART_LOCK_NAME]: asyncio.get_event_loop().call_later(1, _do_restart) return web.json_response({'message': 'Restarting in 1s'}, ...

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def read_10xgenomics(cls, tarball_fpath: str, prefix: str, use_ensembl_ids: bool = False): """Read a 10X genomics compressed tarball containing expression data. Note: common prefix patterns: - "filtered_gene_bc_matrices/[annotations]/" - "filtered_matric...

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def credential_share_simulate(self, cred_id, *user_ids): """Shares a given credential to the specified Users. :param cred_id: Credential ID :param user_ids: List of User IDs """ return self.raw_query("credential", "shareSimulate", data={ 'id': cred_id, 'u...

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35.9

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def from_string(cls, token_string): """ `token_string` should be the string representation from the server. """ # unhexlify works fine with unicode input in everythin but pypy3, where it Raises "TypeError: 'str' does not support the buffer interface" if isinstance(token_string, six.text_type): ...

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async def commit( request: web.Request, session: UpdateSession) -> web.Response: """ Serves /update/:session/commit """ if session.stage != Stages.DONE: return web.json_response( data={'error': 'not-ready', 'message': f'System is not ready to commit the update ' ...

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