kejian/codesearchnet-python-pep8-full · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def draw_3d(self, width=300, height=500, style='stick', Hs=True): # pragma: no cover r'''Interface for drawing an interactive 3D view of the molecule. Requires an HTML5 browser, and the libraries RDKit, pymol3D, and IPython. An exception is raised if all three of these libraries are not ...	[ "def", "draw_3d", "(", "self", ",", "width", "=", "300", ",", "height", "=", "500", ",", "style", "=", "'stick'", ",", "Hs", "=", "True", ")", ":", "# pragma: no cover", "try", ":", "import", "py3Dmol", "from", "IPython", ".", "display", "import", "dis...	34.078947	0.006006
def tax_ids(self): ''' Return all tax_ids in node table ''' fetch = select([self.nodes.c.tax_id]).execute().fetchall() ids = [t[0] for t in fetch] return ids	[ "def", "tax_ids", "(", "self", ")", ":", "fetch", "=", "select", "(", "[", "self", ".", "nodes", ".", "c", ".", "tax_id", "]", ")", ".", "execute", "(", ")", ".", "fetchall", "(", ")", "ids", "=", "[", "t", "[", "0", "]", "for", "t", "in", ...	28.428571	0.009756
def process_line(self, dirname, line): """ Processes a line return a 3-element tuple representing (filename, line_number, error_messages) or None to indicate no error. :param: dirname - directory the code is running in For default implementation, regex in `self.response_format`...	[ "def", "process_line", "(", "self", ",", "dirname", ",", "line", ")", ":", "if", "not", "hasattr", "(", "self", ",", "'response_format'", ")", ":", "raise", "NotImplementedError", "(", ")", "match", "=", "self", ".", "response_format", ".", "search", "(", ...	39.952381	0.002328
def cli(env, identifier, columns): """Reserved Capacity Group details. Will show which guests are assigned to a reservation.""" manager = CapacityManager(env.client) mask = """mask[instances[id,createDate,guestId,billingItem[id, description, recurringFee, category[name]], guest[modifyDate,id,...	[ "def", "cli", "(", "env", ",", "identifier", ",", "columns", ")", ":", "manager", "=", "CapacityManager", "(", "env", ".", "client", ")", "mask", "=", "\"\"\"mask[instances[id,createDate,guestId,billingItem[id, description, recurringFee, category[name]],\n guest[...	44.454545	0.006006
def reload(self): """Reloads the current model's data from the underlying database record, updating it in-place.""" self.emit('will_reload') self.populate(self.collection.find_one(type(self)._id_spec(self['_id']))) self.emit('did_reload')	[ "def", "reload", "(", "self", ")", ":", "self", ".", "emit", "(", "'will_reload'", ")", "self", ".", "populate", "(", "self", ".", "collection", ".", "find_one", "(", "type", "(", "self", ")", ".", "_id_spec", "(", "self", "[", "'_id'", "]", ")", "...	45.5	0.010791
def plot_contours(self, grid, filled=True, ax=None, labels=None, subplots_kw=dict(), **kwargs): """ Plot equipotentials contours. Computes the potential energy on a grid (specified by the array `grid`). .. warning:: Right now the grid input must be arrays and must ...	[ "def", "plot_contours", "(", "self", ",", "grid", ",", "filled", "=", "True", ",", "ax", "=", "None", ",", "labels", "=", "None", ",", "subplots_kw", "=", "dict", "(", ")", ",", "", "", "kwargs", ")", ":", "import", "matplotlib", ".", "pyplot", "...	32.411765	0.002348
def _connect(self, address): """Connect to a device given its uuid """ latency = 0 conn_interval_min = 6 conn_interval_max = 100 timeout = 1.0 try: #Allow passing either a binary address or a hex string if isinstance(address, str) and len...	[ "def", "_connect", "(", "self", ",", "address", ")", ":", "latency", "=", "0", "conn_interval_min", "=", "6", "conn_interval_max", "=", "100", "timeout", "=", "1.0", "try", ":", "#Allow passing either a binary address or a hex string", "if", "isinstance", "(", "ad...	38.230769	0.006376
def filter_with_schema(self, model=None, context=None): """ Perform model filtering with schema """ if model is None or self.schema is None: return self._schema.filter( model=model, context=context if self.use_context else None )	[ "def", "filter_with_schema", "(", "self", ",", "model", "=", "None", ",", "context", "=", "None", ")", ":", "if", "model", "is", "None", "or", "self", ".", "schema", "is", "None", ":", "return", "self", ".", "_schema", ".", "filter", "(", "model", "=...	32.222222	0.006711
def is_fw_complete(self): """This API returns the completion status of FW. This returns True if a FW is created with a active policy that has more than one rule associated with it and if a driver init is done successfully. """ LOG.info("In fw_complete needed %(fw_created...	[ "def", "is_fw_complete", "(", "self", ")", ":", "LOG", ".", "info", "(", "\"In fw_complete needed %(fw_created)s \"", "\"%(active_policy_id)s %(is_fw_drvr_created)s \"", "\"%(pol_present)s %(fw_type)s\"", ",", "{", "'fw_created'", ":", "self", ".", "fw_created", ",", "'acti...	51.307692	0.001472
def WritePathStatHistory(self, client_path, stat_entries): """Writes a collection of `StatEntry` observed for particular path. Args: client_path: A `ClientPath` instance. stat_entries: A dictionary with timestamps as keys and `StatEntry` instances as values. """ client_path_history ...	[ "def", "WritePathStatHistory", "(", "self", ",", "client_path", ",", "stat_entries", ")", ":", "client_path_history", "=", "ClientPathHistory", "(", ")", "for", "timestamp", ",", "stat_entry", "in", "iteritems", "(", "stat_entries", ")", ":", "client_path_history", ...	39.769231	0.003781
def _writeXput(self, session, directory, fileCards, name=None, replaceParamFile=None): """ GSSHA Project Write Files to File Method """ for card in self.projectCards: if (card.name in fileCards) and self._noneOrNumValue(card.value) \ and...	[ "def", "_writeXput", "(", "self", ",", "session", ",", "directory", ",", "fileCards", ",", "name", "=", "None", ",", "replaceParamFile", "=", "None", ")", ":", "for", "card", "in", "self", ".", "projectCards", ":", "if", "(", "card", ".", "name", "in",...	45.964286	0.003044
def _monitor_pbc_status(self): """Monitor the PBC status.""" LOG.info('Starting to Monitor PBC status.') inspect = celery.current_app.control.inspect() workers = inspect.ping() start_time = time.time() while workers is None: time.sleep(0.1) elapsed...	[ "def", "_monitor_pbc_status", "(", "self", ")", ":", "LOG", ".", "info", "(", "'Starting to Monitor PBC status.'", ")", "inspect", "=", "celery", ".", "current_app", ".", "control", ".", "inspect", "(", ")", "workers", "=", "inspect", ".", "ping", "(", ")", ...	42.228571	0.001323
def AddCommandLineArguments( cls, argument_group, category=None, names=None): """Adds command line arguments to a configuration object. Args: argument_group (argparse._ArgumentGroup\|argparse.ArgumentParser): argparse group. category (Optional[str]): category of helpers to apply to ...	[ "def", "AddCommandLineArguments", "(", "cls", ",", "argument_group", ",", "category", "=", "None", ",", "names", "=", "None", ")", ":", "# Process the helper classes in alphabetical order this is needed to", "# keep the argument order consistent.", "for", "helper_name", ",", ...	45.772727	0.003891
def p_pkg_cr_text_1(self, p): """pkg_cr_text : PKG_CPY_TEXT pkg_cr_text_value""" try: self.builder.set_pkg_cr_text(self.document, p[2]) except OrderError: self.order_error('PackageCopyrightText', 'PackageFileName', p.lineno(1)) except CardinalityError: ...	[ "def", "p_pkg_cr_text_1", "(", "self", ",", "p", ")", ":", "try", ":", "self", ".", "builder", ".", "set_pkg_cr_text", "(", "self", ".", "document", ",", "p", "[", "2", "]", ")", "except", "OrderError", ":", "self", ".", "order_error", "(", "'PackageCo...	46.875	0.007853
def add_component(self, entity: int, component_instance: Any) -> None: """Add a new Component instance to an Entity. Add a Component instance to an Entiy. If a Component of the same type is already assigned to the Entity, it will be replaced. :param entity: The Entity to associate the ...	[ "def", "add_component", "(", "self", ",", "entity", ":", "int", ",", "component_instance", ":", "Any", ")", "->", "None", ":", "component_type", "=", "type", "(", "component_instance", ")", "if", "component_type", "not", "in", "self", ".", "_components", ":"...	36.714286	0.002528
def _unique_class_name(namespace: Dict[str, Any], uuid: uuid.UUID) -> str: '''Generate unique to namespace name for a class using uuid. Parameters :``namespace``: the namespace to verify uniqueness against :``uuid``: the "unique" portion of the name Return Value(s) A unique stri...	[ "def", "_unique_class_name", "(", "namespace", ":", "Dict", "[", "str", ",", "Any", "]", ",", "uuid", ":", "uuid", ".", "UUID", ")", "->", "str", ":", "count", "=", "0", "name", "=", "original_name", "=", "'f_'", "+", "uuid", ".", "hex", "while", "...	23.136364	0.001887
def ipfix(): """Return a list of values from the list of IANA IP Flow Information Export (IPFIX) Entities, or an empty list if the IANA website is unreachable. Store it as a function attribute so that we only build the list once. """ if not hasattr(ipfix, 'ipflist'): ilist = [] try: ...	[ "def", "ipfix", "(", ")", ":", "if", "not", "hasattr", "(", "ipfix", ",", "'ipflist'", ")", ":", "ilist", "=", "[", "]", "try", ":", "data", "=", "requests", ".", "get", "(", "'http://www.iana.org/assignments/ipfix/ipfix-'", "'information-elements.csv'", ")", ...	37.217391	0.001139
def send_media_file(self, filename): """ Function used to send media files from the media folder to the browser. """ cache_timeout = self.get_send_file_max_age(filename) return send_from_directory(self.config['MEDIA_FOLDER'], filename, cache_tim...	[ "def", "send_media_file", "(", "self", ",", "filename", ")", ":", "cache_timeout", "=", "self", ".", "get_send_file_max_age", "(", "filename", ")", "return", "send_from_directory", "(", "self", ".", "config", "[", "'MEDIA_FOLDER'", "]", ",", "filename", ",", "...	47.571429	0.0059
def calc_size_and_sha265(content: io.IOBase, chunk_size: int): """Calculates the size and the sha2566 value of the content.""" size = 0 sha256 = hashlib.sha256() content.seek(0, io.SEEK_SET) while True: buf = content.read(chunk_size) length = len(buf) size += length s...	[ "def", "calc_size_and_sha265", "(", "content", ":", "io", ".", "IOBase", ",", "chunk_size", ":", "int", ")", ":", "size", "=", "0", "sha256", "=", "hashlib", ".", "sha256", "(", ")", "content", ".", "seek", "(", "0", ",", "io", ".", "SEEK_SET", ")", ...	31.692308	0.002358
def randomZ(maximum=None, bits=256): """ Retrieve a random BigInt. @maximum: If specified, the value will be no larger than this modulus. @bits: If no maximum is specified, the value will have @bits. """ result = BigInt() # Select a random number smaller than the maximum. if maximum: ...	[ "def", "randomZ", "(", "maximum", "=", "None", ",", "bits", "=", "256", ")", ":", "result", "=", "BigInt", "(", ")", "# Select a random number smaller than the maximum.", "if", "maximum", ":", "maximum", "=", "coerceBigInt", "(", "maximum", ")", "librelic", "....	32.555556	0.003317
def attribute(path, name): """Returns the two numbers found behind --[A-Z] in path. If several matches are found, the last one is returned. Parameters ---------- path : string String with path of file/folder to get attribute from. name : string Name of attribute to get. Should b...	[ "def", "attribute", "(", "path", ",", "name", ")", ":", "matches", "=", "re", ".", "findall", "(", "'--'", "+", "name", ".", "upper", "(", ")", "+", "'([0-9]{2})'", ",", "path", ")", "if", "matches", ":", "return", "int", "(", "matches", "[", "-", ...	27.727273	0.001585
def _get_mro(obj_class): """ Get a reasonable method resolution order of a class and its superclasses for both old-style and new-style classes. """ if not hasattr(obj_class, '__mro__'): # Old-style class. Mix in object to make a fake new-style class. try: obj_class = type(obj...	[ "def", "_get_mro", "(", "obj_class", ")", ":", "if", "not", "hasattr", "(", "obj_class", ",", "'__mro__'", ")", ":", "# Old-style class. Mix in object to make a fake new-style class.", "try", ":", "obj_class", "=", "type", "(", "obj_class", ".", "__name__", ",", "...	38.058824	0.003017
def _parse_scram_response(response): """Split a scram response into key, value pairs.""" return dict(item.split(b"=", 1) for item in response.split(b","))	[ "def", "_parse_scram_response", "(", "response", ")", ":", "return", "dict", "(", "item", ".", "split", "(", "b\"=\"", ",", "1", ")", "for", "item", "in", "response", ".", "split", "(", "b\",\"", ")", ")" ]	53.333333	0.006173
def posterior_samples(self, X, size=10, Y_metadata=None, likelihood=None, **predict_kwargs): """ Samples the posterior GP at the points X. :param X: the points at which to take the samples. :type X: np.ndarray (Nnew x self.input_dim.) :param size: the number of a posteriori samp...	[ "def", "posterior_samples", "(", "self", ",", "X", ",", "size", "=", "10", ",", "Y_metadata", "=", "None", ",", "likelihood", "=", "None", ",", "", "", "predict_kwargs", ")", ":", "fsim", "=", "self", ".", "posterior_samples_f", "(", "X", ",", "size"...	45.363636	0.005888
def update_collection(self, collection): """ Update a mongodb collection. """ node = self.node flow = node if node.is_flow else node.flow # Build the key used to store the entry in the document. key = node.name if node.is_task: key = "w" + str...	[ "def", "update_collection", "(", "self", ",", "collection", ")", ":", "node", "=", "self", ".", "node", "flow", "=", "node", "if", "node", ".", "is_flow", "else", "node", ".", "flow", "# Build the key used to store the entry in the document.", "key", "=", "node"...	38.243902	0.002488
def check_time_extents(self, ds): """ Check that the values of time_coverage_start/time_coverage_end approximately match the data. """ if not (hasattr(ds, 'time_coverage_start') and hasattr(ds, 'time_coverage_end')): return # Parse the ISO 8601 formatted dates ...	[ "def", "check_time_extents", "(", "self", ",", "ds", ")", ":", "if", "not", "(", "hasattr", "(", "ds", ",", "'time_coverage_start'", ")", "and", "hasattr", "(", "ds", ",", "'time_coverage_end'", ")", ")", ":", "return", "# Parse the ISO 8601 formatted dates", ...	48.066667	0.005097
def add_deploy_key(self, auth, username, repo_name, title, key_content): """ Add a deploy key to the specified repo. :param auth.Authentication auth: authentication object :param str username: username of owner of repository :param str repo_name: the name of the repo :pa...	[ "def", "add_deploy_key", "(", "self", ",", "auth", ",", "username", ",", "repo_name", ",", "title", ",", "key_content", ")", ":", "data", "=", "{", "\"title\"", ":", "title", ",", "\"key\"", ":", "key_content", "}", "response", "=", "self", ".", "post", ...	45	0.004353
def check(self, solution): """Check that a solution satisfies the constraint. Args: solution (container): An assignment for the variables in the constraint. Returns: bool: True if the solution satisfies the constraint; otherwise False. Examples:...	[ "def", "check", "(", "self", ",", "solution", ")", ":", "return", "self", ".", "func", "(", "*", "(", "solution", "[", "v", "]", "for", "v", "in", "self", ".", "variables", ")", ")" ]	36.037037	0.006006
def acos(x, context=None): """ Return the inverse cosine of ``x``. The mathematically exact result lies in the range [0, π]. However, note that as a result of rounding to the current context, it's possible for the actual value returned to be fractionally larger than π:: >>> from bigfloat ...	[ "def", "acos", "(", "x", ",", "context", "=", "None", ")", ":", "return", "_apply_function_in_current_context", "(", "BigFloat", ",", "mpfr", ".", "mpfr_acos", ",", "(", "BigFloat", ".", "_implicit_convert", "(", "x", ")", ",", ")", ",", "context", ",", ...	26.041667	0.001543
def _node_is_match(qualified_name, package_names, fqn): """Determine if a qualfied name matches an fqn, given the set of package names in the graph. :param List[str] qualified_name: The components of the selector or node name, split on '.'. :param Set[str] package_names: The set of pacakge name...	[ "def", "_node_is_match", "(", "qualified_name", ",", "package_names", ",", "fqn", ")", ":", "if", "len", "(", "qualified_name", ")", "==", "1", "and", "fqn", "[", "-", "1", "]", "==", "qualified_name", "[", "0", "]", ":", "return", "True", "if", "quali...	36.772727	0.001205
def p_gate_op_4(self, program): """ gate_op : id '(' exp_list ')' id_list ';' """ program[0] = node.CustomUnitary([program[1], program[3], program[5]]) self.verify_as_gate(program[1], program[5], arglist=program[3]) self.verify_bit_list(program[5]) self.verify_exp...	[ "def", "p_gate_op_4", "(", "self", ",", "program", ")", ":", "program", "[", "0", "]", "=", "node", ".", "CustomUnitary", "(", "[", "program", "[", "1", "]", ",", "program", "[", "3", "]", ",", "program", "[", "5", "]", "]", ")", "self", ".", "...	41.333333	0.005263
def fit(self): """Fit each distribution to `data` and calculate an SSE. WARNING: significant runtime. (~1min) """ # Defaults/anchors best_sse = np.inf best_param = (0.0, 1.0) best_dist = scs.norm # Compute the histogram of `x`. density=True ...	[ "def", "fit", "(", "self", ")", ":", "# Defaults/anchors\r", "best_sse", "=", "np", ".", "inf", "best_param", "=", "(", "0.0", ",", "1.0", ")", "best_dist", "=", "scs", ".", "norm", "# Compute the histogram of `x`. density=True gives a probability\r", "# density fu...	33.428571	0.000923
def put(self, key, data, ttl_secs=None): """Like :meth:`~simplekv.KeyValueStore.put`, but with an additional parameter: :param ttl_secs: Number of seconds until the key expires. See above for valid values. :raises exceptions.ValueError: If ``ttl_secs...	[ "def", "put", "(", "self", ",", "key", ",", "data", ",", "ttl_secs", "=", "None", ")", ":", "self", ".", "_check_valid_key", "(", "key", ")", "if", "not", "isinstance", "(", "data", ",", "bytes", ")", ":", "raise", "IOError", "(", "\"Provided data is n...	43.333333	0.003012
def _set_axis_properties(self, axis): """Set AxisProperties and PropertySets""" if not getattr(axis, 'properties'): axis.properties = AxisProperties() for prop in ['ticks', 'axis', 'major_ticks', 'minor_ticks', 'title', 'labels']: setattr(...	[ "def", "_set_axis_properties", "(", "self", ",", "axis", ")", ":", "if", "not", "getattr", "(", "axis", ",", "'properties'", ")", ":", "axis", ".", "properties", "=", "AxisProperties", "(", ")", "for", "prop", "in", "[", "'ticks'", ",", "'axis'", ",", ...	50.142857	0.005602
def parse_entry(self, entry): """This parses a VCF row and stores the relevant information""" entry = entry.split('\t') self.chrom, self.pos, self.id, self.ref, alt_, self.qual, filter_, info, self.format = entry[:9] self.samples = entry[9:] self.alt = alt_.split(',') if ...	[ "def", "parse_entry", "(", "self", ",", "entry", ")", ":", "entry", "=", "entry", ".", "split", "(", "'\\t'", ")", "self", ".", "chrom", ",", "self", ".", "pos", ",", "self", ".", "id", ",", "self", ".", "ref", ",", "alt_", ",", "self", ".", "q...	40.583333	0.008024
def read_index(group, version='1.1'): """Return the index stored in a h5features group. :param h5py.Group group: The group to read the index from. :param str version: The h5features version of the `group`. :return: a 1D numpy array of features indices. """ if version == '0.1': return np...	[ "def", "read_index", "(", "group", ",", "version", "=", "'1.1'", ")", ":", "if", "version", "==", "'0.1'", ":", "return", "np", ".", "int64", "(", "group", "[", "'index'", "]", "[", "...", "]", ")", "elif", "version", "==", "'1.0'", ":", "return", ...	34.384615	0.002179
def plot(self,kwargs): """ make a cheap plot of the GeoStruct Parameters ---------- kwargs : (dict) keyword arguments to use for plotting. Returns ------- ax : matplotlib.pyplot.axis the axis with the GeoStruct plot Note ...	[ "def", "plot", "(", "self", ",", "", "", "kwargs", ")", ":", "#", "if", "\"ax\"", "in", "kwargs", ":", "ax", "=", "kwargs", ".", "pop", "(", "\"ax\"", ")", "else", ":", "try", ":", "import", "matplotlib", ".", "pyplot", "as", "plt", "except", "...	29.395833	0.010288
def register_iq_request_coro(self, type_, payload_cls, coro): """ Alias of :meth:`register_iq_request_handler`. .. deprecated:: 0.10 This alias will be removed in version 1.0. """ warnings.warn( "register_iq_request_coro is a deprecated alias to " ...	[ "def", "register_iq_request_coro", "(", "self", ",", "type_", ",", "payload_cls", ",", "coro", ")", ":", "warnings", ".", "warn", "(", "\"register_iq_request_coro is a deprecated alias to \"", "\"register_iq_request_handler and will be removed in aioxmpp 1.0\"", ",", "Deprecati...	36.428571	0.003824
def buildNewRootname(filename, extn=None, extlist=None): """ Build rootname for a new file. Use 'extn' for new filename if given, does NOT append a suffix/extension at all. Does NOT check to see if it exists already. Will ALWAYS return a new filename. """ # Search known suffixes to r...	[ "def", "buildNewRootname", "(", "filename", ",", "extn", "=", "None", ",", "extlist", "=", "None", ")", ":", "# Search known suffixes to replace ('_crj.fits',...)", "_extlist", "=", "copy", ".", "deepcopy", "(", "EXTLIST", ")", "# Also, add a default where '_dth.fits' r...	28.135135	0.0065
def unpack_di_block(di_block): """ This function unpacks a nested list of [dec,inc,mag_moment] into a list of declination values, a list of inclination values and a list of magnetic moment values. Mag_moment values are optional, while dec and inc values are required. Parameters ----------- ...	[ "def", "unpack_di_block", "(", "di_block", ")", ":", "dec_list", "=", "[", "]", "inc_list", "=", "[", "]", "moment_list", "=", "[", "]", "for", "n", "in", "range", "(", "0", ",", "len", "(", "di_block", ")", ")", ":", "dec", "=", "di_block", "[", ...	29.744186	0.001514
def dataset_download_files(self, dataset, path=None, force=False, quiet=True, unzip=False): """ download all files for a dataset Parameters ...	[ "def", "dataset_download_files", "(", "self", ",", "dataset", ",", "path", "=", "None", ",", "force", "=", "False", ",", "quiet", "=", "True", ",", "unzip", "=", "False", ")", ":", "if", "dataset", "is", "None", ":", "raise", "ValueError", "(", "'A dat...	38.580645	0.003261
def get_receptive_field(layers, img_size): """Get the real filter sizes of each layer involved in convoluation. See Xudong Cao: https://www.kaggle.com/c/datasciencebowl/forums/t/13166/happy-lantern-festival-report-and-code This does not yet take into consideration feature pooling, padding, striding ...	[ "def", "get_receptive_field", "(", "layers", ",", "img_size", ")", ":", "receptive_field", "=", "np", ".", "zeros", "(", "(", "len", "(", "layers", ")", ",", "2", ")", ")", "conv_mode", "=", "True", "first_conv_layer", "=", "True", "expon", "=", "np", ...	35.055556	0.000771
def _send_int(self,value): """ Convert a numerical value into an integer, then to a bytes object Check bounds for signed int. """ # Coerce to int. This will throw a ValueError if the value can't # actually be converted. if type(value) != int: new_val...	[ "def", "_send_int", "(", "self", ",", "value", ")", ":", "# Coerce to int. This will throw a ValueError if the value can't ", "# actually be converted.", "if", "type", "(", "value", ")", "!=", "int", ":", "new_value", "=", "int", "(", "value", ")", "if", "self", "...	35.090909	0.010088
def all(self, as_dict=False, as_ordereddict=False): """Returns a list of all rows for the RecordCollection. If they haven't been fetched yet, consume the iterator and cache the results.""" # By calling list it calls the __iter__ method rows = list(self) if as_dict: ...	[ "def", "all", "(", "self", ",", "as_dict", "=", "False", ",", "as_ordereddict", "=", "False", ")", ":", "# By calling list it calls the __iter__ method", "rows", "=", "list", "(", "self", ")", "if", "as_dict", ":", "return", "[", "r", ".", "as_dict", "(", ...	34.692308	0.00432
def make_aliased_type(cls, other_base): """ Factory for making Aliased{Filter,Factor,Classifier}. """ docstring = dedent( """ A {t} that names another {t}. Parameters ---------- term : {t} {{name}} """ ...	[ "def", "make_aliased_type", "(", "cls", ",", "other_base", ")", ":", "docstring", "=", "dedent", "(", "\"\"\"\n A {t} that names another {t}.\n\n Parameters\n ----------\n term : {t}\n {{name}}\n \"\"\"", ")", ".", "form...	25.851852	0.002762
def query_by_post(postid): ''' Query records by post. ''' return TabPost2Tag.select().where( TabPost2Tag.post_id == postid ).order_by(TabPost2Tag.order)	[ "def", "query_by_post", "(", "postid", ")", ":", "return", "TabPost2Tag", ".", "select", "(", ")", ".", "where", "(", "TabPost2Tag", ".", "post_id", "==", "postid", ")", ".", "order_by", "(", "TabPost2Tag", ".", "order", ")" ]	28.285714	0.009804
def _update_recently_opened_state_machines(self): """Update the sub menu Open Recent in File menu Method clean's first all menu items of the sub menu 'recent open', then insert the user menu item to clean recent opened state machine paths and finally insert menu items for all elements in recent...	[ "def", "_update_recently_opened_state_machines", "(", "self", ")", ":", "if", "not", "self", ".", "registered_view", ":", "return", "for", "item", "in", "self", ".", "view", ".", "sub_menu_open_recently", ".", "get_children", "(", ")", ":", "self", ".", "view"...	53.108108	0.005997
def get_status(task, prefix, expnum, version, ccd, return_message=False): """ Report back status of the given program by looking up the associated VOSpace annotation. @param task: name of the process or task that will be checked. @param prefix: prefix of the file that was processed (often fk or None) ...	[ "def", "get_status", "(", "task", ",", "prefix", ",", "expnum", ",", "version", ",", "ccd", ",", "return_message", "=", "False", ")", ":", "key", "=", "get_process_tag", "(", "prefix", "+", "task", ",", "ccd", ",", "version", ")", "status", "=", "get_t...	45.578947	0.003394
def _load_variants(self, variants, variant_type, case_obj, individual_positions, rank_threshold, institute_id, build=None, rank_results_header=None, vep_header=None, category='snv', sample_info = None): """Perform the loading of variants This is the functio...	[ "def", "_load_variants", "(", "self", ",", "variants", ",", "variant_type", ",", "case_obj", ",", "individual_positions", ",", "rank_threshold", ",", "institute_id", ",", "build", "=", "None", ",", "rank_results_header", "=", "None", ",", "vep_header", "=", "Non...	43.894737	0.00335
def next_power_of_2(n): """ Return next power of 2 greater than or equal to n """ n -= 1 # greater than OR EQUAL TO n shift = 1 while (n + 1) & n: # n+1 is not a power of 2 yet n \|= n >> shift shift *= 2 return max(4, n + 1)	[ "def", "next_power_of_2", "(", "n", ")", ":", "n", "-=", "1", "# greater than OR EQUAL TO n", "shift", "=", "1", "while", "(", "n", "+", "1", ")", "&", "n", ":", "# n+1 is not a power of 2 yet", "n", "\|=", "n", ">>", "shift", "shift", "*=", "2", "return"...	31.875	0.003817
def update( ctx, state, bare=False, dry_run=None, outdated=False, **kwargs ): """Runs lock, then sync.""" from ..core import ( ensure_project, do_outdated, do_lock, do_sync, project, ) ensure_project(three=state.three, python=state.python,...	[ "def", "update", "(", "ctx", ",", "state", ",", "bare", "=", "False", ",", "dry_run", "=", "None", ",", "outdated", "=", "False", ",", "", "", "kwargs", ")", ":", "from", ".", ".", "core", "import", "(", "ensure_project", ",", "do_outdated", ",", ...	28.727273	0.00102
def dcminfo(dcmvar, verbose=True): ''' Get basic info about the DICOM file/header. ''' if isinstance(dcmvar, basestring): if verbose: print 'i> provided DICOM file:', dcmvar dhdr = dcm.dcmread(dcmvar) elif isinstance(dcmvar, dict): dhdr = dcmvar elif isinstance(d...	[ "def", "dcminfo", "(", "dcmvar", ",", "verbose", "=", "True", ")", ":", "if", "isinstance", "(", "dcmvar", ",", "basestring", ")", ":", "if", "verbose", ":", "print", "'i> provided DICOM file:'", ",", "dcmvar", "dhdr", "=", "dcm", ".", "dcmread", "(", "d...	28.662921	0.014399
def main(): """ Parse command line argument and output appropriate file type (csv or JSON) """ parser = ArgumentParser() parser.add_argument( "-c", "--clinvarfile", dest="clinvarfile", help="ClinVar VCF file (either this or -C must be specified)", metavar="CLINVARFILE") ...	[ "def", "main", "(", ")", ":", "parser", "=", "ArgumentParser", "(", ")", "parser", ".", "add_argument", "(", "\"-c\"", ",", "\"--clinvarfile\"", ",", "dest", "=", "\"clinvarfile\"", ",", "help", "=", "\"ClinVar VCF file (either this or -C must be specified)\"", ",",...	41.371429	0.00045
def parse(self, datetimeString, sourceTime=None): """ Splits the given C{datetimeString} into tokens, finds the regex patterns that match and then calculates a C{struct_time} value from the chunks. If C{sourceTime} is given then the C{struct_time} value will be ca...	[ "def", "parse", "(", "self", ",", "datetimeString", ",", "sourceTime", "=", "None", ")", ":", "if", "sourceTime", ":", "if", "isinstance", "(", "sourceTime", ",", "datetime", ".", "datetime", ")", ":", "if", "_debug", ":", "print", "'coercing datetime to tim...	42.227848	0.005344
def last_date_in_output_for_sid(self, sid): """ Parameters ---------- sid : int Asset identifier. Returns ------- out : pd.Timestamp The midnight of the last date written in to the output for the given sid. """ ...	[ "def", "last_date_in_output_for_sid", "(", "self", ",", "sid", ")", ":", "sizes_path", "=", "\"{0}/close/meta/sizes\"", ".", "format", "(", "self", ".", "sidpath", "(", "sid", ")", ")", "if", "not", "os", ".", "path", ".", "exists", "(", "sizes_path", ")",...	34.730769	0.002155
def add_sample(self, sample_id, features, label, class_id=None, overwrite=False, feature_names=None): """Adds a new sample to the dataset with its features, label and class ID. This is the preferred way to construct the dataset. Paramete...	[ "def", "add_sample", "(", "self", ",", "sample_id", ",", "features", ",", "label", ",", "class_id", "=", "None", ",", "overwrite", "=", "False", ",", "feature_names", "=", "None", ")", ":", "if", "sample_id", "in", "self", ".", "__data", "and", "not", ...	44.949367	0.00496
def filepaths_in_dir(path): """Find all files in a directory, and return the relative paths to those files. Args: path (str): the directory path to walk Returns: list: the list of relative paths to all files inside of ``path`` or its subdirectories. """ filepaths = [] ...	[ "def", "filepaths_in_dir", "(", "path", ")", ":", "filepaths", "=", "[", "]", "for", "root", ",", "directories", ",", "filenames", "in", "os", ".", "walk", "(", "path", ")", ":", "for", "filename", "in", "filenames", ":", "filepath", "=", "os", ".", ...	31.444444	0.003431
def md5sum( string ): """ Generate the md5 checksum for a string Args: string (Str): The string to be checksummed. Returns: (Str): The hex checksum. """ h = hashlib.new( 'md5' ) h.update( string.encode( 'utf-8' ) ) return h.hexdigest()	[ "def", "md5sum", "(", "string", ")", ":", "h", "=", "hashlib", ".", "new", "(", "'md5'", ")", "h", ".", "update", "(", "string", ".", "encode", "(", "'utf-8'", ")", ")", "return", "h", ".", "hexdigest", "(", ")" ]	21	0.031579
def generate_np(self, x_val, *kwargs): """ Generate adversarial examples and return them as a NumPy array. Sub-classes should not* implement this method unless they must perform special handling of arguments. :param x_val: A NumPy array with the original inputs. :param **kwargs: optional para...	[ "def", "generate_np", "(", "self", ",", "x_val", ",", "", "", "kwargs", ")", ":", "if", "self", ".", "sess", "is", "None", ":", "raise", "ValueError", "(", "\"Cannot use `generate_np` when no `sess` was\"", "\" provided\"", ")", "packed", "=", "self", ".", ...	31.470588	0.006346
def get_archive_link(self, archive_format, ref=github.GithubObject.NotSet): """ :calls: `GET /repos/:owner/:repo/:archive_format/:ref <http://developer.github.com/v3/repos/contents>`_ :param archive_format: string :param ref: string :rtype: string """ assert isins...	[ "def", "get_archive_link", "(", "self", ",", "archive_format", ",", "ref", "=", "github", ".", "GithubObject", ".", "NotSet", ")", ":", "assert", "isinstance", "(", "archive_format", ",", "(", "str", ",", "unicode", ")", ")", ",", "archive_format", "assert",...	41.882353	0.005495
def parse_binary(self, data, display, rawdict = 0): """values, remdata = s.parse_binary(data, display, rawdict = 0) Convert a binary representation of the structure into Python values. DATA is a string or a buffer containing the binary data. DISPLAY should be a Xlib.protocol.display.D...	[ "def", "parse_binary", "(", "self", ",", "data", ",", "display", ",", "rawdict", "=", "0", ")", ":", "ret", "=", "{", "}", "val", "=", "struct", ".", "unpack", "(", "self", ".", "static_codes", ",", "data", "[", ":", "self", ".", "static_size", "]"...	35.276316	0.001814
def compare_lists(old=None, new=None): ''' Compare before and after results from various salt functions, returning a dict describing the changes that were made ''' ret = dict() for item in new: if item not in old: ret['new'] = item for item in old: if item not in ...	[ "def", "compare_lists", "(", "old", "=", "None", ",", "new", "=", "None", ")", ":", "ret", "=", "dict", "(", ")", "for", "item", "in", "new", ":", "if", "item", "not", "in", "old", ":", "ret", "[", "'new'", "]", "=", "item", "for", "item", "in"...	27.461538	0.00271
def robust_single_linkage(X, cut, k=5, alpha=1.4142135623730951, gamma=5, metric='euclidean', algorithm='best', memory=Memory(cachedir=None, verbose=0), leaf_size=40, core_dist_n_jobs=4, **kwargs): """Perform robust single linkage cluster...	[ "def", "robust_single_linkage", "(", "X", ",", "cut", ",", "k", "=", "5", ",", "alpha", "=", "1.4142135623730951", ",", "gamma", "=", "5", ",", "metric", "=", "'euclidean'", ",", "algorithm", "=", "'best'", ",", "memory", "=", "Memory", "(", "cachedir", ...	43.223602	0.001264
def set_percentage(x: Iterable[X], y: Iterable[X]) -> float: """What percentage of x is contained within y? :param set x: A set :param set y: Another set :return: The percentage of x contained within y """ a, b = set(x), set(y) if not a: return 0.0 return len(a & b) / len(a)	[ "def", "set_percentage", "(", "x", ":", "Iterable", "[", "X", "]", ",", "y", ":", "Iterable", "[", "X", "]", ")", "->", "float", ":", "a", ",", "b", "=", "set", "(", "x", ")", ",", "set", "(", "y", ")", "if", "not", "a", ":", "return", "0.0...	23.538462	0.003145
def resolve(self, space_id=None, environment_id=None): """ Resolves link to a specific resource. """ proxy_method = getattr( self._client, base_path_for(self.link_type) ) if self.link_type == 'Space': return proxy_method().find(self.id...	[ "def", "resolve", "(", "self", ",", "space_id", "=", "None", ",", "environment_id", "=", "None", ")", ":", "proxy_method", "=", "getattr", "(", "self", ".", "_client", ",", "base_path_for", "(", "self", ".", "link_type", ")", ")", "if", "self", ".", "l...	32.666667	0.003968
def __pull_combined_properties(self): """ something here... """ query_params = { "titles": self.title, "prop": "extracts\|redirects\|links\|coordinates\|categories\|extlinks", "continue": dict(), # summary "explaintext": "", "exintro": ...	[ "def", "__pull_combined_properties", "(", "self", ")", ":", "query_params", "=", "{", "\"titles\"", ":", "self", ".", "title", ",", "\"prop\"", ":", "\"extracts\|redirects\|links\|coordinates\|categories\|extlinks\"", ",", "\"continue\"", ":", "dict", "(", ")", ",", "# s...	30.391753	0.000986
def messagesReceived(self, msg_list): """ Handle incoming messages @param msg_list: Message list to process """ self.stats.packReceived(len(msg_list)) for msg in msg_list: self.conn.messageReceived(msg)	[ "def", "messagesReceived", "(", "self", ",", "msg_list", ")", ":", "self", ".", "stats", ".", "packReceived", "(", "len", "(", "msg_list", ")", ")", "for", "msg", "in", "msg_list", ":", "self", ".", "conn", ".", "messageReceived", "(", "msg", ")" ]	27.555556	0.007813
def getImageByTag(tag): '''Check if an image with a given tag exists. No side-effects. Idempotent. Handles ImageNotFound and APIError exceptions, but only reraises APIError. ''' require_str("tag", tag) image = None try: image = client.images.get(tag) print("Found image", tag, "....	[ "def", "getImageByTag", "(", "tag", ")", ":", "require_str", "(", "\"tag\"", ",", "tag", ")", "image", "=", "None", "try", ":", "image", "=", "client", ".", "images", ".", "get", "(", "tag", ")", "print", "(", "\"Found image\"", ",", "tag", ",", "\"....	29.823529	0.001912
def _readoct(self, length, start): """Read bits and interpret as an octal string.""" if length % 3: raise InterpretError("Cannot convert to octal unambiguously - " "not multiple of 3 bits.") if not length: return '' # Get main octa...	[ "def", "_readoct", "(", "self", ",", "length", ",", "start", ")", ":", "if", "length", "%", "3", ":", "raise", "InterpretError", "(", "\"Cannot convert to octal unambiguously - \"", "\"not multiple of 3 bits.\"", ")", "if", "not", "length", ":", "return", "''", ...	42.857143	0.003263
def compress_file(filepath, compression="gz"): """ Compresses a file with the correct extension. Functions like standard Unix command line gzip and bzip2 in the sense that the original uncompressed files are not retained. Args: filepath (str): Path to file. compression (str): A comp...	[ "def", "compress_file", "(", "filepath", ",", "compression", "=", "\"gz\"", ")", ":", "if", "compression", "not", "in", "[", "\"gz\"", ",", "\"bz2\"", "]", ":", "raise", "ValueError", "(", "\"Supported compression formats are 'gz' and 'bz2'.\"", ")", "from", "mont...	40.842105	0.001259
def parse_time(time): """ Parse a date/time string and return a corresponding datetime object. Args: time (str): A ``string` of one of the following formats: ``%H:%M``, ``%Y-%m-%d`` or ``%Y-%m-%d %H:%M``. Returns: datetime.datetime: Depending on input string either returns ...	[ "def", "parse_time", "(", "time", ")", ":", "length", "=", "len", "(", "time", ".", "strip", "(", ")", ".", "split", "(", ")", ")", "if", "length", "==", "1", ":", "try", ":", "result", "=", "datetime", ".", "datetime", ".", "strptime", "(", "tim...	33.657895	0.00304
def MultiReadClientSnapshot(self, client_ids, cursor=None): """Reads the latest client snapshots for a list of clients.""" int_ids = [db_utils.ClientIDToInt(cid) for cid in client_ids] query = ( "SELECT h.client_id, h.client_snapshot, UNIX_TIMESTAMP(h.timestamp)," " s.startup_info " ...	[ "def", "MultiReadClientSnapshot", "(", "self", ",", "client_ids", ",", "cursor", "=", "None", ")", ":", "int_ids", "=", "[", "db_utils", ".", "ClientIDToInt", "(", "cid", ")", "for", "cid", "in", "client_ids", "]", "query", "=", "(", "\"SELECT h.client_id, h...	45.931034	0.005882
def convergence_of_galaxies_from_grid(grid, galaxies): """Compute the convergence of a list of galaxies from an input grid, by summing the individual convergence \ of each galaxy's mass profile. If the input grid is a grids.SubGrid, the convergence is calculated on the sub-grid and binned-up to the \ ...	[ "def", "convergence_of_galaxies_from_grid", "(", "grid", ",", "galaxies", ")", ":", "if", "galaxies", ":", "return", "sum", "(", "map", "(", "lambda", "g", ":", "g", ".", "convergence_from_grid", "(", "grid", ")", ",", "galaxies", ")", ")", "else", ":", ...	44.47619	0.005241
def restrict_joins(self, q, bindings): """ Restrict the joins across all tables referenced in the database query to those specified in the model for the relevant dimensions. If a single table is used for the query, no unnecessary joins are performed. If more than one table are re...	[ "def", "restrict_joins", "(", "self", ",", "q", ",", "bindings", ")", ":", "if", "len", "(", "q", ".", "froms", ")", "==", "1", ":", "return", "q", "else", ":", "for", "binding", "in", "bindings", ":", "if", "binding", ".", "table", "==", "self", ...	52.854167	0.004644
def correl_model(self): """ Return a correlation object. See :mod:`openquake.hazardlib.correlation` for more info. """ correl_name = self.ground_motion_correlation_model if correl_name is None: # no correlation model return correl_model_cls = getattr(...	[ "def", "correl_model", "(", "self", ")", ":", "correl_name", "=", "self", ".", "ground_motion_correlation_model", "if", "correl_name", "is", "None", ":", "# no correlation model", "return", "correl_model_cls", "=", "getattr", "(", "correlation", ",", "'%sCorrelationMo...	40.363636	0.004405
def zlist(columns, items, print_columns=None, text="", title="", width=DEFAULT_WIDTH, height=ZLIST_HEIGHT, timeout=None): """ Display a list of values :param columns: a list of columns name :type columns: list of strings :param items: a list of values :type items: list of st...	[ "def", "zlist", "(", "columns", ",", "items", ",", "print_columns", "=", "None", ",", "text", "=", "\"\"", ",", "title", "=", "\"\"", ",", "width", "=", "DEFAULT_WIDTH", ",", "height", "=", "ZLIST_HEIGHT", ",", "timeout", "=", "None", ")", ":", "dialog...	33.068966	0.002026
def initialize_state(self): """ Call this to initialize the state of the UI after everything has been connected. """ if self.__scan_hardware_source: self.__profile_changed_event_listener = self.__scan_hardware_source.profile_changed_event.listen(self.__update_profile_index) self....	[ "def", "initialize_state", "(", "self", ")", ":", "if", "self", ".", "__scan_hardware_source", ":", "self", ".", "__profile_changed_event_listener", "=", "self", ".", "__scan_hardware_source", ".", "profile_changed_event", ".", "listen", "(", "self", ".", "__update_...	69.630435	0.004618
def sismember(self, name, value): """ Return a boolean indicating if ``value`` is a member of set ``name`` send raw (source) values here. Right functioning with other values not guaranteed (and even worse). """ return self.storage.sismember(name, self.dump(value))	[ "def", "sismember", "(", "self", ",", "name", ",", "value", ")", ":", "return", "self", ".", "storage", ".", "sismember", "(", "name", ",", "self", ".", "dump", "(", "value", ")", ")" ]	43.714286	0.00641
def execPath(self): """the executable application's path""" vers = self.version.label if self.version else None # executables in Versions folder are stored by baseVersion (modified by game data patches) return self.installedApp.exec_path(vers)	[ "def", "execPath", "(", "self", ")", ":", "vers", "=", "self", ".", "version", ".", "label", "if", "self", ".", "version", "else", "None", "# executables in Versions folder are stored by baseVersion (modified by game data patches)", "return", "self", ".", "installedApp"...	66	0.014981
def Unique(a, t): """ Unique op. """ _, idxs, inv = np.unique(a, return_index=True, return_inverse=True) return np.copy(a)[np.sort(idxs)], idxs[inv].astype(dtype_map[t])	[ "def", "Unique", "(", "a", ",", "t", ")", ":", "_", ",", "idxs", ",", "inv", "=", "np", ".", "unique", "(", "a", ",", "return_index", "=", "True", ",", "return_inverse", "=", "True", ")", "return", "np", ".", "copy", "(", "a", ")", "[", "np", ...	30.666667	0.005291
def use_isolated_objective_bank_view(self): """Pass through to provider ObjectiveLookupSession.use_isolated_objective_bank_view""" self._objective_bank_view = ISOLATED # self._get_provider_session('objective_lookup_session') # To make sure the session is tracked for session in self._get_...	[ "def", "use_isolated_objective_bank_view", "(", "self", ")", ":", "self", ".", "_objective_bank_view", "=", "ISOLATED", "# self._get_provider_session('objective_lookup_session') # To make sure the session is tracked", "for", "session", "in", "self", ".", "_get_provider_sessions", ...	51.555556	0.008475
def _make_2d_array(self, data): """ Convert a 1D array of mesh values to a masked 2D mesh array given the 1D mesh indices ``mesh_idx``. Parameters ---------- data : 1D `~numpy.ndarray` A 1D array of mesh values. Returns ------- result...	[ "def", "_make_2d_array", "(", "self", ",", "data", ")", ":", "if", "data", ".", "shape", "!=", "self", ".", "mesh_idx", ".", "shape", ":", "raise", "ValueError", "(", "'data and mesh_idx must have the same shape'", ")", "if", "np", ".", "ma", ".", "is_masked...	31.314286	0.00177
def create_fpath_dir(self, fpath: str): """Creates directory for fpath.""" os.makedirs(os.path.dirname(fpath), exist_ok=True)	[ "def", "create_fpath_dir", "(", "self", ",", "fpath", ":", "str", ")", ":", "os", ".", "makedirs", "(", "os", ".", "path", ".", "dirname", "(", "fpath", ")", ",", "exist_ok", "=", "True", ")" ]	46.333333	0.014184
def _augment_book(self, uuid, event): """ Checks if the newly created object is a book and only has an ISBN. If so, tries to fetch the book data off the internet. :param uuid: uuid of book to augment :param client: requesting client """ try: if not is...	[ "def", "_augment_book", "(", "self", ",", "uuid", ",", "event", ")", ":", "try", ":", "if", "not", "isbnmeta", ":", "self", ".", "log", "(", "\"No isbntools found! Install it to get full \"", "\"functionality!\"", ",", "lvl", "=", "warn", ")", "return", "new_b...	40.506667	0.000964
def _matcher(self, other): """ CGRContainer < CGRContainer """ if isinstance(other, CGRContainer): return GraphMatcher(other, self, lambda x, y: x == y, lambda x, y: x == y) raise TypeError('only cgr-cgr possible')	[ "def", "_matcher", "(", "self", ",", "other", ")", ":", "if", "isinstance", "(", "other", ",", "CGRContainer", ")", ":", "return", "GraphMatcher", "(", "other", ",", "self", ",", "lambda", "x", ",", "y", ":", "x", "==", "y", ",", "lambda", "x", ","...	37.142857	0.011278
def set_flowcontrol_send(self, name, value=None, default=False, disable=False): """Configures the interface flowcontrol send value Args: name (string): The interface identifier. It must be a full interface name (ie Ethernet, not Et) ...	[ "def", "set_flowcontrol_send", "(", "self", ",", "name", ",", "value", "=", "None", ",", "default", "=", "False", ",", "disable", "=", "False", ")", ":", "return", "self", ".", "set_flowcontrol", "(", "name", ",", "'send'", ",", "value", ",", "default", ...	38.333333	0.003636
def connected_sites( self, site_labels=None ): """ Searches the lattice to find sets of sites that are contiguously neighbouring. Mutually exclusive sets of contiguous sites are returned as Cluster objects. Args: site_labels (:obj:(List(Str)\|Set(Str)\|Str), optional): Labels ...	[ "def", "connected_sites", "(", "self", ",", "site_labels", "=", "None", ")", ":", "if", "site_labels", ":", "selected_sites", "=", "self", ".", "select_sites", "(", "site_labels", ")", "else", ":", "selected_sites", "=", "self", ".", "sites", "initial_clusters...	38.658537	0.022769
def plot(self, ncols=2): """ :param ncols: Number of grid columns :return: a bokeh figure image """ grid = gridplot(self.plots, ncols=ncols) return grid	[ "def", "plot", "(", "self", ",", "ncols", "=", "2", ")", ":", "grid", "=", "gridplot", "(", "self", ".", "plots", ",", "ncols", "=", "ncols", ")", "return", "grid" ]	27.714286	0.01
def total_amount(qs) -> Total: """Sums the amounts of the objects in the queryset, keeping each currency separate. :param qs: A querystring containing objects that have an amount field of type Money. :return: A Total object. """ aggregate = qs.values('amount_currency').annotate(sum=Sum('amount')) ...	[ "def", "total_amount", "(", "qs", ")", "->", "Total", ":", "aggregate", "=", "qs", ".", "values", "(", "'amount_currency'", ")", ".", "annotate", "(", "sum", "=", "Sum", "(", "'amount'", ")", ")", "return", "Total", "(", "Money", "(", "amount", "=", ...	57.428571	0.009804
def calc_gamma_from_position_autocorrelation_fit(self, GammaGuess=None, FreqTrapGuess=None, silent=False, MakeFig=True, show_fig=True): """ Calculates the total damping, i.e. Gamma, by calculating the autocorrleation of the position-time trace. The autocorrelation is fitted with an exponential ...	[ "def", "calc_gamma_from_position_autocorrelation_fit", "(", "self", ",", "GammaGuess", "=", "None", ",", "FreqTrapGuess", "=", "None", ",", "silent", "=", "False", ",", "MakeFig", "=", "True", ",", "show_fig", "=", "True", ")", ":", "autocorrelation", "=", "ca...	43.071429	0.008106
def set_simulate(self, status): """Set the simulation status. :param status: Value to set the simulation :type status: bool :returns: None :raises: InvalidInput """ if type(status) != bool: raise InvalidInput("Status value must be bool") self....	[ "def", "set_simulate", "(", "self", ",", "status", ")", ":", "if", "type", "(", "status", ")", "!=", "bool", ":", "raise", "InvalidInput", "(", "\"Status value must be bool\"", ")", "self", ".", "_simulate", "=", "bool2int", "(", "status", ")" ]	30.727273	0.005747
def _get_websocket(self, reuse=True): """ Reuse existing connection or create a new connection. """ # Check if still connected if self.ws and reuse: if self.ws.connected: return self.ws logging.debug("Stale connection, reconnecting.") ...	[ "def", "_get_websocket", "(", "self", ",", "reuse", "=", "True", ")", ":", "# Check if still connected", "if", "self", ".", "ws", "and", "reuse", ":", "if", "self", ".", "ws", ".", "connected", ":", "return", "self", ".", "ws", "logging", ".", "debug", ...	28.538462	0.005222
def put(self, request, id=None, **kwargs): """ Handles put requests. """ if id: obj = get_object_or_404(self.queryset(request), id=id) if not self.has_update_permission(request, obj): return HttpResponseForbidden(_('You do not have permission to pe...	[ "def", "put", "(", "self", ",", "request", ",", "id", "=", "None", ",", "", "", "kwargs", ")", ":", "if", "id", ":", "obj", "=", "get_object_or_404", "(", "self", ".", "queryset", "(", "request", ")", ",", "id", "=", "id", ")", "if", "not", "...	38.615385	0.005837
def to_xml(self): ''' Returns an XMLi representation of the shipping details. @return: Element ''' for n, v in {"recipient": self.recipient}.items(): if is_empty_or_none(v): raise ValueError("'%s' attribute cannot be empty or None." % n) doc =...	[ "def", "to_xml", "(", "self", ")", ":", "for", "n", ",", "v", "in", "{", "\"recipient\"", ":", "self", ".", "recipient", "}", ".", "items", "(", ")", ":", "if", "is_empty_or_none", "(", "v", ")", ":", "raise", "ValueError", "(", "\"'%s' attribute canno...	34.230769	0.004376
def has_children(self): "returns False if children is empty or contains only empty lines else True." return bool([x for x in self.children if not isinstance(x, EmptyLine)])	[ "def", "has_children", "(", "self", ")", ":", "return", "bool", "(", "[", "x", "for", "x", "in", "self", ".", "children", "if", "not", "isinstance", "(", "x", ",", "EmptyLine", ")", "]", ")" ]	62	0.015957
def escalatee(self, escalatee_id, action='ADD'): """ Adds a assignee to the task Args: escalatee_id: The id of the escalatee to be added action: """ if not self.can_update(): self._tcex.handle_error(910, [self.type]) return self.tc_r...	[ "def", "escalatee", "(", "self", ",", "escalatee_id", ",", "action", "=", "'ADD'", ")", ":", "if", "not", "self", ".", "can_update", "(", ")", ":", "self", ".", "_tcex", ".", "handle_error", "(", "910", ",", "[", "self", ".", "type", "]", ")", "ret...	28.266667	0.006849
def search_dependencies(self): """Returns a list of other modules that this module and its members and executables depend on in order to run correctly. This differs from the self.dependencies attribute that just hase explicit module names from the 'use' clauses. """ result = [sel...	[ "def", "search_dependencies", "(", "self", ")", ":", "result", "=", "[", "self", ".", "module", ".", "name", "]", "#First we look at the explicit use references from this module and all", "#its dependencies until the chain terminates.", "stack", "=", "self", ".", "needs", ...	45.486486	0.007563
def moon_phases(ephemeris): """Build a function of time that returns the moon phase 0 through 3. The function that this returns will expect a single argument that is a :class:`~skyfield.timelib.Time` and will return the phase of the moon as an integer. See the accompanying array ``MOON_PHASES`` if ...	[ "def", "moon_phases", "(", "ephemeris", ")", ":", "earth", "=", "ephemeris", "[", "'earth'", "]", "moon", "=", "ephemeris", "[", "'moon'", "]", "sun", "=", "ephemeris", "[", "'sun'", "]", "def", "moon_phase_at", "(", "t", ")", ":", "\"\"\"Return the phase ...	39.652174	0.001071
def finder_for_path(path): """ Return a resource finder for a path, which should represent a container. :param path: The path. :return: A :class:`ResourceFinder` instance for the path. """ result = None # calls any path hooks, gets importer into cache pkgutil.get_importer(path) load...	[ "def", "finder_for_path", "(", "path", ")", ":", "result", "=", "None", "# calls any path hooks, gets importer into cache", "pkgutil", ".", "get_importer", "(", "path", ")", "loader", "=", "sys", ".", "path_importer_cache", ".", "get", "(", "path", ")", "finder", ...	31.611111	0.001706
def send_to_tsdb(self, realm, host, service, metrics, ts, path): """Send performance data to time series database Indeed this function stores metrics in the internal cache and checks if the flushing is necessary and then flushes. :param realm: concerned realm :type: string ...	[ "def", "send_to_tsdb", "(", "self", ",", "realm", ",", "host", ",", "service", ",", "metrics", ",", "ts", ",", "path", ")", ":", "if", "ts", "is", "None", ":", "ts", "=", "int", "(", "time", ".", "time", "(", ")", ")", "data", "=", "{", "\"meas...	30.340426	0.002038

def draw_3d(self, width=300, height=500, style='stick', Hs=True): # pragma: no cover r'''Interface for drawing an interactive 3D view of the molecule. Requires an HTML5 browser, and the libraries RDKit, pymol3D, and IPython. An exception is raised if all three of these libraries are not ...

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def tax_ids(self): ''' Return all tax_ids in node table ''' fetch = select([self.nodes.c.tax_id]).execute().fetchall() ids = [t[0] for t in fetch] return ids

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def process_line(self, dirname, line): """ Processes a line return a 3-element tuple representing (filename, line_number, error_messages) or None to indicate no error. :param: dirname - directory the code is running in For default implementation, regex in `self.response_format`...

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def cli(env, identifier, columns): """Reserved Capacity Group details. Will show which guests are assigned to a reservation.""" manager = CapacityManager(env.client) mask = """mask[instances[id,createDate,guestId,billingItem[id, description, recurringFee, category[name]], guest[modifyDate,id,...

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def reload(self): """Reloads the current model's data from the underlying database record, updating it in-place.""" self.emit('will_reload') self.populate(self.collection.find_one(type(self)._id_spec(self['_id']))) self.emit('did_reload')

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def plot_contours(self, grid, filled=True, ax=None, labels=None, subplots_kw=dict(), **kwargs): """ Plot equipotentials contours. Computes the potential energy on a grid (specified by the array `grid`). .. warning:: Right now the grid input must be arrays and must ...

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def _connect(self, address): """Connect to a device given its uuid """ latency = 0 conn_interval_min = 6 conn_interval_max = 100 timeout = 1.0 try: #Allow passing either a binary address or a hex string if isinstance(address, str) and len...

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def filter_with_schema(self, model=None, context=None): """ Perform model filtering with schema """ if model is None or self.schema is None: return self._schema.filter( model=model, context=context if self.use_context else None )

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def is_fw_complete(self): """This API returns the completion status of FW. This returns True if a FW is created with a active policy that has more than one rule associated with it and if a driver init is done successfully. """ LOG.info("In fw_complete needed %(fw_created...

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def WritePathStatHistory(self, client_path, stat_entries): """Writes a collection of `StatEntry` observed for particular path. Args: client_path: A `ClientPath` instance. stat_entries: A dictionary with timestamps as keys and `StatEntry` instances as values. """ client_path_history ...

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def _writeXput(self, session, directory, fileCards, name=None, replaceParamFile=None): """ GSSHA Project Write Files to File Method """ for card in self.projectCards: if (card.name in fileCards) and self._noneOrNumValue(card.value) \ and...

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def _monitor_pbc_status(self): """Monitor the PBC status.""" LOG.info('Starting to Monitor PBC status.') inspect = celery.current_app.control.inspect() workers = inspect.ping() start_time = time.time() while workers is None: time.sleep(0.1) elapsed...

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def AddCommandLineArguments( cls, argument_group, category=None, names=None): """Adds command line arguments to a configuration object. Args: argument_group (argparse._ArgumentGroup|argparse.ArgumentParser): argparse group. category (Optional[str]): category of helpers to apply to ...

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def p_pkg_cr_text_1(self, p): """pkg_cr_text : PKG_CPY_TEXT pkg_cr_text_value""" try: self.builder.set_pkg_cr_text(self.document, p[2]) except OrderError: self.order_error('PackageCopyrightText', 'PackageFileName', p.lineno(1)) except CardinalityError: ...

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def add_component(self, entity: int, component_instance: Any) -> None: """Add a new Component instance to an Entity. Add a Component instance to an Entiy. If a Component of the same type is already assigned to the Entity, it will be replaced. :param entity: The Entity to associate the ...

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def _unique_class_name(namespace: Dict[str, Any], uuid: uuid.UUID) -> str: '''Generate unique to namespace name for a class using uuid. **Parameters** :``namespace``: the namespace to verify uniqueness against :``uuid``: the "unique" portion of the name **Return Value(s)** A unique stri...

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def ipfix(): """Return a list of values from the list of IANA IP Flow Information Export (IPFIX) Entities, or an empty list if the IANA website is unreachable. Store it as a function attribute so that we only build the list once. """ if not hasattr(ipfix, 'ipflist'): ilist = [] try: ...

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def send_media_file(self, filename): """ Function used to send media files from the media folder to the browser. """ cache_timeout = self.get_send_file_max_age(filename) return send_from_directory(self.config['MEDIA_FOLDER'], filename, cache_tim...

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def calc_size_and_sha265(content: io.IOBase, chunk_size: int): """Calculates the size and the sha2566 value of the content.""" size = 0 sha256 = hashlib.sha256() content.seek(0, io.SEEK_SET) while True: buf = content.read(chunk_size) length = len(buf) size += length s...

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def randomZ(maximum=None, bits=256): """ Retrieve a random BigInt. @maximum: If specified, the value will be no larger than this modulus. @bits: If no maximum is specified, the value will have @bits. """ result = BigInt() # Select a random number smaller than the maximum. if maximum: ...

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def attribute(path, name): """Returns the two numbers found behind --[A-Z] in path. If several matches are found, the last one is returned. Parameters ---------- path : string String with path of file/folder to get attribute from. name : string Name of attribute to get. Should b...

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def _get_mro(obj_class): """ Get a reasonable method resolution order of a class and its superclasses for both old-style and new-style classes. """ if not hasattr(obj_class, '__mro__'): # Old-style class. Mix in object to make a fake new-style class. try: obj_class = type(obj...

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def _parse_scram_response(response): """Split a scram response into key, value pairs.""" return dict(item.split(b"=", 1) for item in response.split(b","))

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def posterior_samples(self, X, size=10, Y_metadata=None, likelihood=None, **predict_kwargs): """ Samples the posterior GP at the points X. :param X: the points at which to take the samples. :type X: np.ndarray (Nnew x self.input_dim.) :param size: the number of a posteriori samp...

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def update_collection(self, collection): """ Update a mongodb collection. """ node = self.node flow = node if node.is_flow else node.flow # Build the key used to store the entry in the document. key = node.name if node.is_task: key = "w" + str...

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def check_time_extents(self, ds): """ Check that the values of time_coverage_start/time_coverage_end approximately match the data. """ if not (hasattr(ds, 'time_coverage_start') and hasattr(ds, 'time_coverage_end')): return # Parse the ISO 8601 formatted dates ...

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def add_deploy_key(self, auth, username, repo_name, title, key_content): """ Add a deploy key to the specified repo. :param auth.Authentication auth: authentication object :param str username: username of owner of repository :param str repo_name: the name of the repo :pa...

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def check(self, solution): """Check that a solution satisfies the constraint. Args: solution (container): An assignment for the variables in the constraint. Returns: bool: True if the solution satisfies the constraint; otherwise False. Examples:...

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def acos(x, context=None): """ Return the inverse cosine of ``x``. The mathematically exact result lies in the range [0, π]. However, note that as a result of rounding to the current context, it's possible for the actual value returned to be fractionally larger than π:: >>> from bigfloat ...

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def _node_is_match(qualified_name, package_names, fqn): """Determine if a qualfied name matches an fqn, given the set of package names in the graph. :param List[str] qualified_name: The components of the selector or node name, split on '.'. :param Set[str] package_names: The set of pacakge name...

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def p_gate_op_4(self, program): """ gate_op : id '(' exp_list ')' id_list ';' """ program[0] = node.CustomUnitary([program[1], program[3], program[5]]) self.verify_as_gate(program[1], program[5], arglist=program[3]) self.verify_bit_list(program[5]) self.verify_exp...

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def fit(self): """Fit each distribution to `data` and calculate an SSE. WARNING: significant runtime. (~1min) """ # Defaults/anchors best_sse = np.inf best_param = (0.0, 1.0) best_dist = scs.norm # Compute the histogram of `x`. density=True ...

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def put(self, key, data, ttl_secs=None): """Like :meth:`~simplekv.KeyValueStore.put`, but with an additional parameter: :param ttl_secs: Number of seconds until the key expires. See above for valid values. :raises exceptions.ValueError: If ``ttl_secs...

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def _set_axis_properties(self, axis): """Set AxisProperties and PropertySets""" if not getattr(axis, 'properties'): axis.properties = AxisProperties() for prop in ['ticks', 'axis', 'major_ticks', 'minor_ticks', 'title', 'labels']: setattr(...

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def parse_entry(self, entry): """This parses a VCF row and stores the relevant information""" entry = entry.split('\t') self.chrom, self.pos, self.id, self.ref, alt_, self.qual, filter_, info, self.format = entry[:9] self.samples = entry[9:] self.alt = alt_.split(',') if ...

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def read_index(group, version='1.1'): """Return the index stored in a h5features group. :param h5py.Group group: The group to read the index from. :param str version: The h5features version of the `group`. :return: a 1D numpy array of features indices. """ if version == '0.1': return np...

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def plot(self,**kwargs): """ make a cheap plot of the GeoStruct Parameters ---------- **kwargs : (dict) keyword arguments to use for plotting. Returns ------- ax : matplotlib.pyplot.axis the axis with the GeoStruct plot Note ...

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def register_iq_request_coro(self, type_, payload_cls, coro): """ Alias of :meth:`register_iq_request_handler`. .. deprecated:: 0.10 This alias will be removed in version 1.0. """ warnings.warn( "register_iq_request_coro is a deprecated alias to " ...

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def buildNewRootname(filename, extn=None, extlist=None): """ Build rootname for a new file. Use 'extn' for new filename if given, does NOT append a suffix/extension at all. Does NOT check to see if it exists already. Will ALWAYS return a new filename. """ # Search known suffixes to r...

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def unpack_di_block(di_block): """ This function unpacks a nested list of [dec,inc,mag_moment] into a list of declination values, a list of inclination values and a list of magnetic moment values. Mag_moment values are optional, while dec and inc values are required. Parameters ----------- ...

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def dataset_download_files(self, dataset, path=None, force=False, quiet=True, unzip=False): """ download all files for a dataset Parameters ...

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def get_receptive_field(layers, img_size): """Get the real filter sizes of each layer involved in convoluation. See Xudong Cao: https://www.kaggle.com/c/datasciencebowl/forums/t/13166/happy-lantern-festival-report-and-code This does not yet take into consideration feature pooling, padding, striding ...

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def _send_int(self,value): """ Convert a numerical value into an integer, then to a bytes object Check bounds for signed int. """ # Coerce to int. This will throw a ValueError if the value can't # actually be converted. if type(value) != int: new_val...

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def all(self, as_dict=False, as_ordereddict=False): """Returns a list of all rows for the RecordCollection. If they haven't been fetched yet, consume the iterator and cache the results.""" # By calling list it calls the __iter__ method rows = list(self) if as_dict: ...

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def make_aliased_type(cls, other_base): """ Factory for making Aliased{Filter,Factor,Classifier}. """ docstring = dedent( """ A {t} that names another {t}. Parameters ---------- term : {t} {{name}} """ ...

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def query_by_post(postid): ''' Query records by post. ''' return TabPost2Tag.select().where( TabPost2Tag.post_id == postid ).order_by(TabPost2Tag.order)

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def _update_recently_opened_state_machines(self): """Update the sub menu Open Recent in File menu Method clean's first all menu items of the sub menu 'recent open', then insert the user menu item to clean recent opened state machine paths and finally insert menu items for all elements in recent...

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def get_status(task, prefix, expnum, version, ccd, return_message=False): """ Report back status of the given program by looking up the associated VOSpace annotation. @param task: name of the process or task that will be checked. @param prefix: prefix of the file that was processed (often fk or None) ...

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def _load_variants(self, variants, variant_type, case_obj, individual_positions, rank_threshold, institute_id, build=None, rank_results_header=None, vep_header=None, category='snv', sample_info = None): """Perform the loading of variants This is the functio...

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def next_power_of_2(n): """ Return next power of 2 greater than or equal to n """ n -= 1 # greater than OR EQUAL TO n shift = 1 while (n + 1) & n: # n+1 is not a power of 2 yet n |= n >> shift shift *= 2 return max(4, n + 1)

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def update( ctx, state, bare=False, dry_run=None, outdated=False, **kwargs ): """Runs lock, then sync.""" from ..core import ( ensure_project, do_outdated, do_lock, do_sync, project, ) ensure_project(three=state.three, python=state.python,...

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def dcminfo(dcmvar, verbose=True): ''' Get basic info about the DICOM file/header. ''' if isinstance(dcmvar, basestring): if verbose: print 'i> provided DICOM file:', dcmvar dhdr = dcm.dcmread(dcmvar) elif isinstance(dcmvar, dict): dhdr = dcmvar elif isinstance(d...

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def main(): """ Parse command line argument and output appropriate file type (csv or JSON) """ parser = ArgumentParser() parser.add_argument( "-c", "--clinvarfile", dest="clinvarfile", help="ClinVar VCF file (either this or -C must be specified)", metavar="CLINVARFILE") ...

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def parse(self, datetimeString, sourceTime=None): """ Splits the given C{datetimeString} into tokens, finds the regex patterns that match and then calculates a C{struct_time} value from the chunks. If C{sourceTime} is given then the C{struct_time} value will be ca...

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def last_date_in_output_for_sid(self, sid): """ Parameters ---------- sid : int Asset identifier. Returns ------- out : pd.Timestamp The midnight of the last date written in to the output for the given sid. """ ...

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def add_sample(self, sample_id, features, label, class_id=None, overwrite=False, feature_names=None): """Adds a new sample to the dataset with its features, label and class ID. This is the preferred way to construct the dataset. Paramete...

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def filepaths_in_dir(path): """Find all files in a directory, and return the relative paths to those files. Args: path (str): the directory path to walk Returns: list: the list of relative paths to all files inside of ``path`` or its subdirectories. """ filepaths = [] ...

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def md5sum( string ): """ Generate the md5 checksum for a string Args: string (Str): The string to be checksummed. Returns: (Str): The hex checksum. """ h = hashlib.new( 'md5' ) h.update( string.encode( 'utf-8' ) ) return h.hexdigest()

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def generate_np(self, x_val, **kwargs): """ Generate adversarial examples and return them as a NumPy array. Sub-classes *should not* implement this method unless they must perform special handling of arguments. :param x_val: A NumPy array with the original inputs. :param **kwargs: optional para...

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def get_archive_link(self, archive_format, ref=github.GithubObject.NotSet): """ :calls: `GET /repos/:owner/:repo/:archive_format/:ref <http://developer.github.com/v3/repos/contents>`_ :param archive_format: string :param ref: string :rtype: string """ assert isins...

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def parse_binary(self, data, display, rawdict = 0): """values, remdata = s.parse_binary(data, display, rawdict = 0) Convert a binary representation of the structure into Python values. DATA is a string or a buffer containing the binary data. DISPLAY should be a Xlib.protocol.display.D...

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def compare_lists(old=None, new=None): ''' Compare before and after results from various salt functions, returning a dict describing the changes that were made ''' ret = dict() for item in new: if item not in old: ret['new'] = item for item in old: if item not in ...

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def robust_single_linkage(X, cut, k=5, alpha=1.4142135623730951, gamma=5, metric='euclidean', algorithm='best', memory=Memory(cachedir=None, verbose=0), leaf_size=40, core_dist_n_jobs=4, **kwargs): """Perform robust single linkage cluster...

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def set_percentage(x: Iterable[X], y: Iterable[X]) -> float: """What percentage of x is contained within y? :param set x: A set :param set y: Another set :return: The percentage of x contained within y """ a, b = set(x), set(y) if not a: return 0.0 return len(a & b) / len(a)

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def resolve(self, space_id=None, environment_id=None): """ Resolves link to a specific resource. """ proxy_method = getattr( self._client, base_path_for(self.link_type) ) if self.link_type == 'Space': return proxy_method().find(self.id...

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def __pull_combined_properties(self): """ something here... """ query_params = { "titles": self.title, "prop": "extracts|redirects|links|coordinates|categories|extlinks", "continue": dict(), # summary "explaintext": "", "exintro": ...

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def messagesReceived(self, msg_list): """ Handle incoming messages @param msg_list: Message list to process """ self.stats.packReceived(len(msg_list)) for msg in msg_list: self.conn.messageReceived(msg)

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def getImageByTag(tag): '''Check if an image with a given tag exists. No side-effects. Idempotent. Handles ImageNotFound and APIError exceptions, but only reraises APIError. ''' require_str("tag", tag) image = None try: image = client.images.get(tag) print("Found image", tag, "....

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def _readoct(self, length, start): """Read bits and interpret as an octal string.""" if length % 3: raise InterpretError("Cannot convert to octal unambiguously - " "not multiple of 3 bits.") if not length: return '' # Get main octa...

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def compress_file(filepath, compression="gz"): """ Compresses a file with the correct extension. Functions like standard Unix command line gzip and bzip2 in the sense that the original uncompressed files are not retained. Args: filepath (str): Path to file. compression (str): A comp...

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def parse_time(time): """ Parse a date/time string and return a corresponding datetime object. Args: time (str): A ``string` of one of the following formats: ``%H:%M``, ``%Y-%m-%d`` or ``%Y-%m-%d %H:%M``. Returns: datetime.datetime: Depending on input string either returns ...

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def MultiReadClientSnapshot(self, client_ids, cursor=None): """Reads the latest client snapshots for a list of clients.""" int_ids = [db_utils.ClientIDToInt(cid) for cid in client_ids] query = ( "SELECT h.client_id, h.client_snapshot, UNIX_TIMESTAMP(h.timestamp)," " s.startup_info " ...

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def convergence_of_galaxies_from_grid(grid, galaxies): """Compute the convergence of a list of galaxies from an input grid, by summing the individual convergence \ of each galaxy's mass profile. If the input grid is a *grids.SubGrid*, the convergence is calculated on the sub-grid and binned-up to the \ ...

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def restrict_joins(self, q, bindings): """ Restrict the joins across all tables referenced in the database query to those specified in the model for the relevant dimensions. If a single table is used for the query, no unnecessary joins are performed. If more than one table are re...

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def correl_model(self): """ Return a correlation object. See :mod:`openquake.hazardlib.correlation` for more info. """ correl_name = self.ground_motion_correlation_model if correl_name is None: # no correlation model return correl_model_cls = getattr(...

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def zlist(columns, items, print_columns=None, text="", title="", width=DEFAULT_WIDTH, height=ZLIST_HEIGHT, timeout=None): """ Display a list of values :param columns: a list of columns name :type columns: list of strings :param items: a list of values :type items: list of st...

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def initialize_state(self): """ Call this to initialize the state of the UI after everything has been connected. """ if self.__scan_hardware_source: self.__profile_changed_event_listener = self.__scan_hardware_source.profile_changed_event.listen(self.__update_profile_index) self....

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def sismember(self, name, value): """ Return a boolean indicating if ``value`` is a member of set ``name`` send raw (source) values here. Right functioning with other values not guaranteed (and even worse). """ return self.storage.sismember(name, self.dump(value))

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def execPath(self): """the executable application's path""" vers = self.version.label if self.version else None # executables in Versions folder are stored by baseVersion (modified by game data patches) return self.installedApp.exec_path(vers)

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def Unique(a, t): """ Unique op. """ _, idxs, inv = np.unique(a, return_index=True, return_inverse=True) return np.copy(a)[np.sort(idxs)], idxs[inv].astype(dtype_map[t])

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def use_isolated_objective_bank_view(self): """Pass through to provider ObjectiveLookupSession.use_isolated_objective_bank_view""" self._objective_bank_view = ISOLATED # self._get_provider_session('objective_lookup_session') # To make sure the session is tracked for session in self._get_...

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def _make_2d_array(self, data): """ Convert a 1D array of mesh values to a masked 2D mesh array given the 1D mesh indices ``mesh_idx``. Parameters ---------- data : 1D `~numpy.ndarray` A 1D array of mesh values. Returns ------- result...

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def create_fpath_dir(self, fpath: str): """Creates directory for fpath.""" os.makedirs(os.path.dirname(fpath), exist_ok=True)

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def _augment_book(self, uuid, event): """ Checks if the newly created object is a book and only has an ISBN. If so, tries to fetch the book data off the internet. :param uuid: uuid of book to augment :param client: requesting client """ try: if not is...

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def _matcher(self, other): """ CGRContainer < CGRContainer """ if isinstance(other, CGRContainer): return GraphMatcher(other, self, lambda x, y: x == y, lambda x, y: x == y) raise TypeError('only cgr-cgr possible')

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def set_flowcontrol_send(self, name, value=None, default=False, disable=False): """Configures the interface flowcontrol send value Args: name (string): The interface identifier. It must be a full interface name (ie Ethernet, not Et) ...

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def connected_sites( self, site_labels=None ): """ Searches the lattice to find sets of sites that are contiguously neighbouring. Mutually exclusive sets of contiguous sites are returned as Cluster objects. Args: site_labels (:obj:(List(Str)|Set(Str)|Str), optional): Labels ...

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def plot(self, ncols=2): """ :param ncols: Number of grid columns :return: a bokeh figure image """ grid = gridplot(self.plots, ncols=ncols) return grid

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def total_amount(qs) -> Total: """Sums the amounts of the objects in the queryset, keeping each currency separate. :param qs: A querystring containing objects that have an amount field of type Money. :return: A Total object. """ aggregate = qs.values('amount_currency').annotate(sum=Sum('amount')) ...

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def calc_gamma_from_position_autocorrelation_fit(self, GammaGuess=None, FreqTrapGuess=None, silent=False, MakeFig=True, show_fig=True): """ Calculates the total damping, i.e. Gamma, by calculating the autocorrleation of the position-time trace. The autocorrelation is fitted with an exponential ...

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def set_simulate(self, status): """Set the simulation status. :param status: Value to set the simulation :type status: bool :returns: None :raises: InvalidInput """ if type(status) != bool: raise InvalidInput("Status value must be bool") self....

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def _get_websocket(self, reuse=True): """ Reuse existing connection or create a new connection. """ # Check if still connected if self.ws and reuse: if self.ws.connected: return self.ws logging.debug("Stale connection, reconnecting.") ...

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def put(self, request, id=None, **kwargs): """ Handles put requests. """ if id: obj = get_object_or_404(self.queryset(request), id=id) if not self.has_update_permission(request, obj): return HttpResponseForbidden(_('You do not have permission to pe...

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def to_xml(self): ''' Returns an XMLi representation of the shipping details. @return: Element ''' for n, v in {"recipient": self.recipient}.items(): if is_empty_or_none(v): raise ValueError("'%s' attribute cannot be empty or None." % n) doc =...

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def has_children(self): "returns False if children is empty or contains only empty lines else True." return bool([x for x in self.children if not isinstance(x, EmptyLine)])

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def escalatee(self, escalatee_id, action='ADD'): """ Adds a assignee to the task Args: escalatee_id: The id of the escalatee to be added action: """ if not self.can_update(): self._tcex.handle_error(910, [self.type]) return self.tc_r...

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def search_dependencies(self): """Returns a list of other modules that this module and its members and executables depend on in order to run correctly. This differs from the self.dependencies attribute that just hase explicit module names from the 'use' clauses. """ result = [sel...

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def moon_phases(ephemeris): """Build a function of time that returns the moon phase 0 through 3. The function that this returns will expect a single argument that is a :class:`~skyfield.timelib.Time` and will return the phase of the moon as an integer. See the accompanying array ``MOON_PHASES`` if ...

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def finder_for_path(path): """ Return a resource finder for a path, which should represent a container. :param path: The path. :return: A :class:`ResourceFinder` instance for the path. """ result = None # calls any path hooks, gets importer into cache pkgutil.get_importer(path) load...

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def send_to_tsdb(self, realm, host, service, metrics, ts, path): """Send performance data to time series database Indeed this function stores metrics in the internal cache and checks if the flushing is necessary and then flushes. :param realm: concerned realm :type: string ...

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