kejian/codesearchnet-python-pep8-full · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def user_id(self): """ Return the ID of the current request's user """ # This needs flask-login to be installed if not has_flask_login: return # and the actual login manager installed if not hasattr(current_app, 'login_manager'): return ...	[ "def", "user_id", "(", "self", ")", ":", "# This needs flask-login to be installed", "if", "not", "has_flask_login", ":", "return", "# and the actual login manager installed", "if", "not", "hasattr", "(", "current_app", ",", "'login_manager'", ")", ":", "return", "# fai...	29.214286	0.002367
def merge(self, df: pd.DataFrame, on: str, how: str="outer", **kwargs): """ Set the main dataframe from the current dataframe and the passed dataframe :param df: the pandas dataframe to merge :type df: pd.DataFrame :param on: param for ``pd.merge`` :type on: str ...	[ "def", "merge", "(", "self", ",", "df", ":", "pd", ".", "DataFrame", ",", "on", ":", "str", ",", "how", ":", "str", "=", "\"outer\"", ",", "", "", "kwargs", ")", ":", "try", ":", "df", "=", "pd", ".", "merge", "(", "self", ".", "df", ",", ...	37.055556	0.005848
def guess_labels(self, doc): """ return a prediction of label names """ doc = doc.clone() # make sure it can be serialized safely return self.index.guess_labels(doc)	[ "def", "guess_labels", "(", "self", ",", "doc", ")", ":", "doc", "=", "doc", ".", "clone", "(", ")", "# make sure it can be serialized safely", "return", "self", ".", "index", ".", "guess_labels", "(", "doc", ")" ]	33.5	0.009709
def _add_agents(self, agent_definitions): """Add specified agents to the client. Set up their shared memory and sensor linkages. Does not spawn an agent in the Holodeck, this is only for documenting and accessing already existing agents. This is an internal function. Positional Arguments...	[ "def", "_add_agents", "(", "self", ",", "agent_definitions", ")", ":", "if", "not", "isinstance", "(", "agent_definitions", ",", "list", ")", ":", "agent_definitions", "=", "[", "agent_definitions", "]", "prepared_agents", "=", "self", ".", "_prepare_agents", "(...	53.375	0.005754
def help_box(): """A simple HTML help dialog box using the distribution data files.""" style = wx.DEFAULT_DIALOG_STYLE \| wx.RESIZE_BORDER dialog_box = wx.Dialog(None, wx.ID_ANY, HELP_TITLE, style=style, size=(620, 450)) html_widget = HtmlHelp(dialog_box, wx.ID_ANY) html_wi...	[ "def", "help_box", "(", ")", ":", "style", "=", "wx", ".", "DEFAULT_DIALOG_STYLE", "\|", "wx", ".", "RESIZE_BORDER", "dialog_box", "=", "wx", ".", "Dialog", "(", "None", ",", "wx", ".", "ID_ANY", ",", "HELP_TITLE", ",", "style", "=", "style", ",", "size...	43.666667	0.002494
def force_process_ordered(self): """ Take any messages from replica that have been ordered and process them, this should be done rarely, like before catchup starts so a more current LedgerStatus can be sent. can be called either 1. when node is participating, this happens...	[ "def", "force_process_ordered", "(", "self", ")", ":", "for", "instance_id", ",", "messages", "in", "self", ".", "replicas", ".", "take_ordereds_out_of_turn", "(", ")", ":", "num_processed", "=", "0", "for", "message", "in", "messages", ":", "self", ".", "tr...	50.136364	0.001779
def _execute(self, sql, params): """Execute statement with reconnecting by connection closed error codes. 2006 (CR_SERVER_GONE_ERROR): MySQL server has gone away 2013 (CR_SERVER_LOST): Lost connection to MySQL server during query 2055 (CR_SERVER_LOST_EXTENDED): Lost connection to MySQL ...	[ "def", "_execute", "(", "self", ",", "sql", ",", "params", ")", ":", "try", ":", "return", "self", ".", "_execute_unsafe", "(", "sql", ",", "params", ")", "except", "MySQLdb", ".", "OperationalError", "as", "ex", ":", "if", "ex", ".", "args", "[", "0...	46.666667	0.007003
def _TTA(learn:Learner, beta:float=0.4, scale:float=1.35, ds_type:DatasetType=DatasetType.Valid, with_loss:bool=False) -> Tensors: "Applies TTA to predict on `ds_type` dataset." preds,y = learn.get_preds(ds_type) all_preds = list(learn.tta_only(scale=scale, ds_type=ds_type)) avg_preds = torch.stack(all_...	[ "def", "_TTA", "(", "learn", ":", "Learner", ",", "beta", ":", "float", "=", "0.4", ",", "scale", ":", "float", "=", "1.35", ",", "ds_type", ":", "DatasetType", "=", "DatasetType", ".", "Valid", ",", "with_loss", ":", "bool", "=", "False", ")", "->",...	51.75	0.036392
def temp_filename(self): """Return a unique tempfile name. """ # TODO: it would be nice to get this to behave more like a # context so we can make sure these temporary files are # removed, regardless of whether an error occurs or the # program is terminated. handl...	[ "def", "temp_filename", "(", "self", ")", ":", "# TODO: it would be nice to get this to behave more like a", "# context so we can make sure these temporary files are", "# removed, regardless of whether an error occurs or the", "# program is terminated.", "handle", ",", "filename", "=", "...	39.2	0.004988
def get_by_id(self, id_networkv6): """Get IPv6 network :param id_networkv4: ID for NetworkIPv6 :return: IPv6 Network """ uri = 'api/networkv4/%s/' % id_networkv6 return super(ApiNetworkIPv6, self).get(uri)	[ "def", "get_by_id", "(", "self", ",", "id_networkv6", ")", ":", "uri", "=", "'api/networkv4/%s/'", "%", "id_networkv6", "return", "super", "(", "ApiNetworkIPv6", ",", "self", ")", ".", "get", "(", "uri", ")" ]	24.7	0.007813
def add_sub_resource(self, relative_id, sub_resource): """Add sub resource""" existing_sub_resources = self.resources.get(sub_resource.RELATIVE_PATH_TEMPLATE, defaultdict(list)) existing_sub_resources[relative_id].append(sub_resource) self.resources.update({sub_resource.RELATIVE_PATH_TEM...	[ "def", "add_sub_resource", "(", "self", ",", "relative_id", ",", "sub_resource", ")", ":", "existing_sub_resources", "=", "self", ".", "resources", ".", "get", "(", "sub_resource", ".", "RELATIVE_PATH_TEMPLATE", ",", "defaultdict", "(", "list", ")", ")", "existi...	69.4	0.011396
def search_report_event_for_facets(self, **kwargs): # noqa: E501 """Lists the values of one or more facets over the customer's events # noqa: E501 # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True ...	[ "def", "search_report_event_for_facets", "(", "self", ",", "", "", "kwargs", ")", ":", "# noqa: E501", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async_req'", ")", ":", "return", "self", ".", "search_repor...	46.142857	0.002022
def ping(self): """Attempt to detect if a device at this address is present on the I2C bus. Will send out the device's address for writing and verify an ACK is received. Returns true if the ACK is received, and false if not. """ self._idle() self._transaction_start() ...	[ "def", "ping", "(", "self", ")", ":", "self", ".", "_idle", "(", ")", "self", ".", "_transaction_start", "(", ")", "self", ".", "_i2c_start", "(", ")", "self", ".", "_i2c_write_bytes", "(", "[", "self", ".", "_address_byte", "(", "False", ")", "]", "...	45.785714	0.004587
def create_sensor(sensor_id, sensor, async_set_state_callback): """Simplify creating sensor by not needing to know type.""" if sensor['type'] in CONSUMPTION: return Consumption(sensor_id, sensor) if sensor['type'] in CARBONMONOXIDE: return CarbonMonoxide(sensor_id, sensor) if sensor['typ...	[ "def", "create_sensor", "(", "sensor_id", ",", "sensor", ",", "async_set_state_callback", ")", ":", "if", "sensor", "[", "'type'", "]", "in", "CONSUMPTION", ":", "return", "Consumption", "(", "sensor_id", ",", "sensor", ")", "if", "sensor", "[", "'type'", "]...	40.888889	0.000664
def _remove_empty_items(d, required): """Return a new dict with any empty items removed. Note that this is not a deep check. If d contains a dictionary which itself contains empty items, those are never checked. This method exists to make to_serializable() functions cleaner. We could revisit this some day, ...	[ "def", "_remove_empty_items", "(", "d", ",", "required", ")", ":", "new_dict", "=", "{", "}", "for", "k", ",", "v", "in", "d", ".", "items", "(", ")", ":", "if", "k", "in", "required", ":", "new_dict", "[", "k", "]", "=", "v", "elif", "isinstance...	28.821429	0.009592
def remove_ipv4addr(self, ipv4addr): """Remove an IPv4 address from the host. :param str ipv4addr: The IP address to remove """ for addr in self.ipv4addrs: if ((isinstance(addr, dict) and addr['ipv4addr'] == ipv4addr) or (isinstance(addr, HostIPv4) and addr....	[ "def", "remove_ipv4addr", "(", "self", ",", "ipv4addr", ")", ":", "for", "addr", "in", "self", ".", "ipv4addrs", ":", "if", "(", "(", "isinstance", "(", "addr", ",", "dict", ")", "and", "addr", "[", "'ipv4addr'", "]", "==", "ipv4addr", ")", "or", "("...	36.272727	0.007335
def calc_datastore(request, job_id): """ Download a full datastore file. :param request: `django.http.HttpRequest` object. :param job_id: The id of the requested datastore :returns: A `django.http.HttpResponse` containing the content of the requested artifact, if pre...	[ "def", "calc_datastore", "(", "request", ",", "job_id", ")", ":", "job", "=", "logs", ".", "dbcmd", "(", "'get_job'", ",", "int", "(", "job_id", ")", ")", "if", "job", "is", "None", ":", "return", "HttpResponseNotFound", "(", ")", "if", "not", "utils",...	33.6	0.001157
def decode(self, descriptor): """ Produce a list of dictionaries for each dimension in this transcoder """ i = iter(descriptor) n = len(self._schema) # Add the name key to our schema schema = self._schema + ('name',) # For each dimensions, generator takes n items off ite...	[ "def", "decode", "(", "self", ",", "descriptor", ")", ":", "i", "=", "iter", "(", "descriptor", ")", "n", "=", "len", "(", "self", ".", "_schema", ")", "# Add the name key to our schema", "schema", "=", "self", ".", "_schema", "+", "(", "'name'", ",", ...	43.2	0.009063
def ssgsea(data, gene_sets, outdir="ssGSEA_", sample_norm_method='rank', min_size=15, max_size=2000, permutation_num=0, weighted_score_type=0.25, scale=True, ascending=False, processes=1, figsize=(7,6), format='pdf', graph_num=20, no_plot=False, seed=None, verbose=False): """Run Gene Set Enric...	[ "def", "ssgsea", "(", "data", ",", "gene_sets", ",", "outdir", "=", "\"ssGSEA_\"", ",", "sample_norm_method", "=", "'rank'", ",", "min_size", "=", "15", ",", "max_size", "=", "2000", ",", "permutation_num", "=", "0", ",", "weighted_score_type", "=", "0.25", ...	62.622642	0.008009
def keras_dropout(layer, rate): '''keras dropout layer. ''' from keras import layers input_dim = len(layer.input.shape) if input_dim == 2: return layers.SpatialDropout1D(rate) elif input_dim == 3: return layers.SpatialDropout2D(rate) elif input_dim == 4: return laye...	[ "def", "keras_dropout", "(", "layer", ",", "rate", ")", ":", "from", "keras", "import", "layers", "input_dim", "=", "len", "(", "layer", ".", "input", ".", "shape", ")", "if", "input_dim", "==", "2", ":", "return", "layers", ".", "SpatialDropout1D", "(",...	25.133333	0.002558
def _compare_replication(current, desired, region, key, keyid, profile): ''' Replication accepts a non-ARN role name, but always returns an ARN ''' if desired is not None and desired.get('Role'): desired = copy.deepcopy(desired) desired['Role'] = _get_role_arn(desired['Role'], ...	[ "def", "_compare_replication", "(", "current", ",", "desired", ",", "region", ",", "key", ",", "keyid", ",", "profile", ")", ":", "if", "desired", "is", "not", "None", "and", "desired", ".", "get", "(", "'Role'", ")", ":", "desired", "=", "copy", ".", ...	50.222222	0.006522
def _get_unique_child_value(xtag, eltname): """Get the text content of the unique child element under xtag with name eltname""" xelt = _get_unique_child(xtag, eltname) if xelt is None: return None else: return xelt.text	[ "def", "_get_unique_child_value", "(", "xtag", ",", "eltname", ")", ":", "xelt", "=", "_get_unique_child", "(", "xtag", ",", "eltname", ")", "if", "xelt", "is", "None", ":", "return", "None", "else", ":", "return", "xelt", ".", "text" ]	35	0.007968
def app_main(self, experiment=None, last=False, new=False, verbose=False, verbosity_level=None, no_modification=False, match=False): """ The main function for parsing global arguments Parameters ---------- experiment: str The id of t...	[ "def", "app_main", "(", "self", ",", "experiment", "=", "None", ",", "last", "=", "False", ",", "new", "=", "False", ",", "verbose", "=", "False", ",", "verbosity_level", "=", "None", ",", "no_modification", "=", "False", ",", "match", "=", "False", ")...	41.533333	0.001568
def get_canvas_image(self): """Get canvas image object. Returns ------- imgobj : `~ginga.canvas.types.image.NormImage` Normalized image sitting on the canvas. """ if self._imgobj is not None: return self._imgobj try: # See if...	[ "def", "get_canvas_image", "(", "self", ")", ":", "if", "self", ".", "_imgobj", "is", "not", "None", ":", "return", "self", ".", "_imgobj", "try", ":", "# See if there is an image on the canvas", "self", ".", "_imgobj", "=", "self", ".", "canvas", ".", "get_...	36.382353	0.001575
def getPlatformsByName(platformNames=['all'], mode=None, tags=[], excludePlatformNames=[]): """Method that recovers the names of the <Platforms> in a given list. :param platformNames: List of strings containing the possible platforms. :param mode: The mode of the search. The following can be ...	[ "def", "getPlatformsByName", "(", "platformNames", "=", "[", "'all'", "]", ",", "mode", "=", "None", ",", "tags", "=", "[", "]", ",", "excludePlatformNames", "=", "[", "]", ")", ":", "allPlatformsList", "=", "getAllPlatformObjects", "(", "mode", ")", "plat...	43.306122	0.004147
def dispatch_submission(self, raw_msg): """Dispatch job submission to appropriate handlers.""" # ensure targets up to date: self.notifier_stream.flush() try: idents, msg = self.session.feed_identities(raw_msg, copy=False) msg = self.session.unserialize(msg, conten...	[ "def", "dispatch_submission", "(", "self", ",", "raw_msg", ")", ":", "# ensure targets up to date:", "self", ".", "notifier_stream", ".", "flush", "(", ")", "try", ":", "idents", ",", "msg", "=", "self", ".", "session", ".", "feed_identities", "(", "raw_msg", ...	37.921348	0.005487
def add(self, items): """Add messages to be managed by the leaser.""" for item in items: # Add the ack ID to the set of managed ack IDs, and increment # the size counter. if item.ack_id not in self._leased_messages: self._leased_messages[item.ack_id] =...	[ "def", "add", "(", "self", ",", "items", ")", ":", "for", "item", "in", "items", ":", "# Add the ack ID to the set of managed ack IDs, and increment", "# the size counter.", "if", "item", ".", "ack_id", "not", "in", "self", ".", "_leased_messages", ":", "self", "....	46.083333	0.005319
def effective_nsamples(self): """The effective number of samples post burn-in that the sampler has acquired so far.""" try: act = numpy.array(list(self.acts.values())).max() except (AttributeError, TypeError): act = numpy.inf if self.burn_in is None: ...	[ "def", "effective_nsamples", "(", "self", ")", ":", "try", ":", "act", "=", "numpy", ".", "array", "(", "list", "(", "self", ".", "acts", ".", "values", "(", ")", ")", ")", ".", "max", "(", ")", "except", "(", "AttributeError", ",", "TypeError", ")...	41.470588	0.002774
def _parse_req(self, req): '''Parses a request object for relevant debugging information. Only works if DEBUG is enabled. Args: req requests req object ''' if DEBUG: if req.status_code != requests.codes.ok: print(("code: {}".format(req.status_code))) print(("response {}".format(req.json()))) ...	[ "def", "_parse_req", "(", "self", ",", "req", ")", ":", "if", "DEBUG", ":", "if", "req", ".", "status_code", "!=", "requests", ".", "codes", ".", "ok", ":", "print", "(", "(", "\"code: {}\"", ".", "format", "(", "req", ".", "status_code", ")", ")", ...	34.833333	0.030303
def supports_spatial_unit_record_type(self, spatial_unit_record_type): """Tests if the given spatial unit record type is supported. arg: spatial_unit_record_type (osid.type.Type): a spatial unit record Type return: (boolean) - ``true`` if the type is supported, ``false`` ...	[ "def", "supports_spatial_unit_record_type", "(", "self", ",", "spatial_unit_record_type", ")", ":", "# Implemented from template for osid.Metadata.supports_coordinate_type", "if", "self", ".", "_kwargs", "[", "'syntax'", "]", "not", "in", "[", "'``SPATIALUNIT``'", "]", ":",...	50.125	0.002448
def apply_patch(self, filename, arch, build_dir=None): """ Apply a patch from the current recipe directory into the current build directory. .. versionchanged:: 0.6.0 Add ability to apply patch from any dir via kwarg `build_dir`''' """ info("Applying patch {}...	[ "def", "apply_patch", "(", "self", ",", "filename", ",", "arch", ",", "build_dir", "=", "None", ")", ":", "info", "(", "\"Applying patch {}\"", ".", "format", "(", "filename", ")", ")", "build_dir", "=", "build_dir", "if", "build_dir", "else", "self", ".",...	42.692308	0.003527
def get_valid_times_for_job_legacy(self, num_job): """ Get the times for which the job num_job will be valid, using the method use in inspiral hipe. """ # All of this should be integers, so no rounding factors needed. shift_dur = self.curr_seg[0] + int(self.job_time_shift * num_j...	[ "def", "get_valid_times_for_job_legacy", "(", "self", ",", "num_job", ")", ":", "# All of this should be integers, so no rounding factors needed.", "shift_dur", "=", "self", ".", "curr_seg", "[", "0", "]", "+", "int", "(", "self", ".", "job_time_shift", "*", "num_job"...	46.866667	0.005579
def _convertPyval(self, oself, pyval): """ Convert a Python value to a value suitable for inserting into the database. @param oself: The object on which this descriptor is an attribute. @param pyval: The value to be converted. @return: A value legal for this column in th...	[ "def", "_convertPyval", "(", "self", ",", "oself", ",", "pyval", ")", ":", "# convert to dbval later, I guess?", "if", "pyval", "is", "None", "and", "not", "self", ".", "allowNone", ":", "raise", "TypeError", "(", "\"attribute [%s.%s = %s()] must not be None\"", "%"...	42.066667	0.003101
def get_rectangle(self): """Gets the coordinates of the rectangle, in which the tree can be put. Returns: tupel: (x1, y1, x2, y2) """ rec = [self.pos[0], self.pos[1]]*2 for age in self.nodes: for node in age: # Check max/min for x/y coords...	[ "def", "get_rectangle", "(", "self", ")", ":", "rec", "=", "[", "self", ".", "pos", "[", "0", "]", ",", "self", ".", "pos", "[", "1", "]", "]", "*", "2", "for", "age", "in", "self", ".", "nodes", ":", "for", "node", "in", "age", ":", "# Check...	34.75	0.003503
def get_period_queryset(self, request, period): """ Computes the queryset for a specific period and, perhaps, a request. :param request: current request being processed. :param period: current requested period. :return: a queryset """ qs = self.get_queryset(reque...	[ "def", "get_period_queryset", "(", "self", ",", "request", ",", "period", ")", ":", "qs", "=", "self", ".", "get_queryset", "(", "request", ")", "if", "not", "period", ":", "return", "qs", "if", "self", ".", "tracked_stamps", "==", "'create'", ":", "retu...	40.473684	0.003812
def name(self): """ Algo name. """ if self._name is None: self._name = self.__class__.__name__ return self._name	[ "def", "name", "(", "self", ")", ":", "if", "self", ".", "_name", "is", "None", ":", "self", ".", "_name", "=", "self", ".", "__class__", ".", "__name__", "return", "self", ".", "_name" ]	22.571429	0.012195
def _interpretMdriztabPars(rec): """ Collect task parameters from the MDRIZTAB record and update the master parameters list with those values Note that parameters read from the MDRIZTAB record must be cleaned up in a similar way that parameters read from the user interface are. """ tabd...	[ "def", "_interpretMdriztabPars", "(", "rec", ")", ":", "tabdict", "=", "{", "}", "# for each entry in the record...", "for", "indx", "in", "range", "(", "len", "(", "rec", ".", "array", ".", "names", ")", ")", ":", "# ... get the name, format, and value.", "_nam...	34.739726	0.009202
def aperture_select(self, ra, dec, kwargs_aperture): """ returns a bool list if the coordinate is within the aperture (list) :param ra: :param dec: :return: """ if self._aperture_type == 'shell': bool_list = self.shell_select(ra, dec, **kwargs_aperture...	[ "def", "aperture_select", "(", "self", ",", "ra", ",", "dec", ",", "kwargs_aperture", ")", ":", "if", "self", ".", "_aperture_type", "==", "'shell'", ":", "bool_list", "=", "self", ".", "shell_select", "(", "ra", ",", "dec", ",", "", "", "kwargs_apertu...	39.142857	0.005348
def filter_humphrey(mesh, alpha=0.1, beta=0.5, iterations=10, laplacian_operator=None): """ Smooth a mesh in-place using laplacian smoothing and Humphrey filtering. Articles "Improved Laplacian Smoothing of Noisy Surfac...	[ "def", "filter_humphrey", "(", "mesh", ",", "alpha", "=", "0.1", ",", "beta", "=", "0.5", ",", "iterations", "=", "10", ",", "laplacian_operator", "=", "None", ")", ":", "# if the laplacian operator was not passed create it here", "if", "laplacian_operator", "is", ...	31.588235	0.000602
def set_rate_BC(self, pores, values): r""" Apply constant rate boundary conditons to the specified pore locations. This is similar to a Neumann boundary condition, but is slightly different since it's the conductance multiplied by the gradient, while Neumann conditions specify ju...	[ "def", "set_rate_BC", "(", "self", ",", "pores", ",", "values", ")", ":", "self", ".", "_set_BC", "(", "pores", "=", "pores", ",", "bctype", "=", "'rate'", ",", "bcvalues", "=", "values", ",", "mode", "=", "'merge'", ")" ]	42.304348	0.00201
def show_text(self, text): """A drawing operator that generates the shape from a string text, rendered according to the current font :meth:`face <set_font_face>`, font :meth:`size <set_font_size>` (font :meth:`matrix <set_font_matrix>`), and font :meth:`options <set_font_...	[ "def", "show_text", "(", "self", ",", "text", ")", ":", "cairo", ".", "cairo_show_text", "(", "self", ".", "_pointer", ",", "_encode_string", "(", "text", ")", ")", "self", ".", "_check_status", "(", ")" ]	41.945946	0.001259
def compile_regex_from_str(self, ft_str): """Given a string describing features masks for a sequence of segments, return a regex matching the corresponding strings. Args: ft_str (str): feature masks, each enclosed in square brackets, in which the features are delimited b...	[ "def", "compile_regex_from_str", "(", "self", ",", "ft_str", ")", ":", "sequence", "=", "[", "]", "for", "m", "in", "re", ".", "finditer", "(", "r'\\[([^]]+)\\]'", ",", "ft_str", ")", ":", "ft_mask", "=", "fts", "(", "m", ".", "group", "(", "1", ")",...	37	0.002509
def rand_elem(seq, n=None): """returns a random element from seq n times. If n is None, it continues indefinitly""" return map(random.choice, repeat(seq, n) if n is not None else repeat(seq))	[ "def", "rand_elem", "(", "seq", ",", "n", "=", "None", ")", ":", "return", "map", "(", "random", ".", "choice", ",", "repeat", "(", "seq", ",", "n", ")", "if", "n", "is", "not", "None", "else", "repeat", "(", "seq", ")", ")" ]	65.666667	0.01005
def handleNotification(self, handle, raw_data): # pylint: disable=unused-argument,invalid-name """ gets called by the bluepy backend when using wait_for_notification """ if raw_data is None: return data = raw_data.decode("utf-8").strip(' \n\t') self._cache = data ...	[ "def", "handleNotification", "(", "self", ",", "handle", ",", "raw_data", ")", ":", "# pylint: disable=unused-argument,invalid-name", "if", "raw_data", "is", "None", ":", "return", "data", "=", "raw_data", ".", "decode", "(", "\"utf-8\"", ")", ".", "strip", "(",...	43.214286	0.004854
def expect_all(a, b): """\ Asserts that two iterables contain the same values. """ assert all(_a == _b for _a, _b in zip_longest(a, b))	[ "def", "expect_all", "(", "a", ",", "b", ")", ":", "assert", "all", "(", "_a", "==", "_b", "for", "_a", ",", "_b", "in", "zip_longest", "(", "a", ",", "b", ")", ")" ]	29.4	0.006623
def vulnerability_section_header_element(feature, parent): """Retrieve vulnerability section header string from definitions.""" _ = feature, parent # NOQA header = vulnerability_section_header['string_format'] return header.capitalize()	[ "def", "vulnerability_section_header_element", "(", "feature", ",", "parent", ")", ":", "_", "=", "feature", ",", "parent", "# NOQA", "header", "=", "vulnerability_section_header", "[", "'string_format'", "]", "return", "header", ".", "capitalize", "(", ")" ]	49.8	0.003953
def remove(self, oid): """ Remove a faked HBA resource. This method also updates the 'hba-uris' property in the parent Partition resource, by removing the URI for the faked HBA resource. Parameters: oid (string): The object ID of the faked HBA resource. ...	[ "def", "remove", "(", "self", ",", "oid", ")", ":", "hba", "=", "self", ".", "lookup_by_oid", "(", "oid", ")", "partition", "=", "self", ".", "parent", "devno", "=", "hba", ".", "properties", ".", "get", "(", "'device-number'", ",", "None", ")", "if"...	33.583333	0.002413
def all(cls, include_deactivated=False): """ Get all resources :param include_deactivated: Include deactivated resources in response :returns: list of Document instances :raises: SocketError, CouchException """ if include_deactivated: resources = yiel...	[ "def", "all", "(", "cls", ",", "include_deactivated", "=", "False", ")", ":", "if", "include_deactivated", ":", "resources", "=", "yield", "cls", ".", "view", ".", "get", "(", "include_docs", "=", "True", ")", "else", ":", "resources", "=", "yield", "cls...	38.846154	0.005803
def enqueue(self, future): """ Enqueue a future to be processed by one of the threads in the pool. The future must be bound to a worker and not have been started yet. """ future.enqueue() with self._lock: if self._shutdown: raise RuntimeError('ThreadPool has been shut down and can...	[ "def", "enqueue", "(", "self", ",", "future", ")", ":", "future", ".", "enqueue", "(", ")", "with", "self", ".", "_lock", ":", "if", "self", ".", "_shutdown", ":", "raise", "RuntimeError", "(", "'ThreadPool has been shut down and can no '", "'longer accept futur...	32.533333	0.011952
def markdown_editor(selector): """ Enable markdown editor for given textarea. :returns: Editor template context. """ return dict( selector=selector, extra_settings=mark_safe(simplejson.dumps( dict(previewParserPath=reverse('django_markdown_preview')))))	[ "def", "markdown_editor", "(", "selector", ")", ":", "return", "dict", "(", "selector", "=", "selector", ",", "extra_settings", "=", "mark_safe", "(", "simplejson", ".", "dumps", "(", "dict", "(", "previewParserPath", "=", "reverse", "(", "'django_markdown_previ...	29	0.003344
def _rollout_metadata(batch_env): """Metadata for rollouts.""" batch_env_shape = batch_env.observ.get_shape().as_list() batch_size = [batch_env_shape[0]] shapes_types_names = [ # TODO(piotrmilos): possibly retrieve the observation type for batch_env (batch_size + batch_env_shape[1:], batch_env.obser...	[ "def", "_rollout_metadata", "(", "batch_env", ")", ":", "batch_env_shape", "=", "batch_env", ".", "observ", ".", "get_shape", "(", ")", ".", "as_list", "(", ")", "batch_size", "=", "[", "batch_env_shape", "[", "0", "]", "]", "shapes_types_names", "=", "[", ...	41.466667	0.011006
def get_activity_ids_by_objective_banks(self, objective_bank_ids): """Gets the list of ``Activity Ids`` corresponding to a list of ``ObjectiveBanks``. arg: objective_bank_ids (osid.id.IdList): list of objective bank ``Ids`` return: (osid.id.IdList) - list of activity ``Ids`` ...	[ "def", "get_activity_ids_by_objective_banks", "(", "self", ",", "objective_bank_ids", ")", ":", "# Implemented from template for", "# osid.resource.ResourceBinSession.get_resource_ids_by_bins", "id_list", "=", "[", "]", "for", "activity", "in", "self", ".", "get_activities_by_o...	47.611111	0.004577
def assign_power_curve(self, wake_losses_model='power_efficiency_curve', smoothing=False, block_width=0.5, standard_deviation_method='turbulence_intensity', smoothing_order='wind_farm_power_curves', turbulence_in...	[ "def", "assign_power_curve", "(", "self", ",", "wake_losses_model", "=", "'power_efficiency_curve'", ",", "smoothing", "=", "False", ",", "block_width", "=", "0.5", ",", "standard_deviation_method", "=", "'turbulence_intensity'", ",", "smoothing_order", "=", "'wind_farm...	53.321678	0.000772
def disable_avatar(self): """ Temporarily disable the avatar. If :attr:`synchronize_vcard` is true, the vCard avatar is disabled (even if disabling the PEP avatar fails). This is done by setting the avatar metadata node empty and if :attr:`synchronize_vcard` is true, do...	[ "def", "disable_avatar", "(", "self", ")", ":", "with", "(", "yield", "from", "self", ".", "_publish_lock", ")", ":", "todo", "=", "[", "]", "if", "self", ".", "_synchronize_vcard", ":", "todo", ".", "append", "(", "self", ".", "_disable_vcard_avatar", "...	34.862069	0.001925
def kill_pid(self, pid): """Kill process by pid Args: pid (int) """ try: p = psutil.Process(pid) p.terminate() self.info_log('Killed [pid:%s][name:%s]' % (p.pid, p.name())) except psutil.NoSuchProcess: self.error_log...	[ "def", "kill_pid", "(", "self", ",", "pid", ")", ":", "try", ":", "p", "=", "psutil", ".", "Process", "(", "pid", ")", "p", ".", "terminate", "(", ")", "self", ".", "info_log", "(", "'Killed [pid:%s][name:%s]'", "%", "(", "p", ".", "pid", ",", "p",...	22.733333	0.005634
def options(self, parser, env): """Register commandline options. Implement this method for normal options behavior with protection from OptionConflictErrors. If you override this method and want the default --with-$name option to be registered, be sure to call super(). """ ...	[ "def", "options", "(", "self", ",", "parser", ",", "env", ")", ":", "env_opt", "=", "'NOSE_WITH_%s'", "%", "self", ".", "name", ".", "upper", "(", ")", "env_opt", "=", "env_opt", ".", "replace", "(", "'-'", ",", "'_'", ")", "parser", ".", "add_option...	48.666667	0.002688
def pattern_input(self, question, message='Invalid entry', pattern='^[a-zA-Z0-9_ ]+$', default='',required=True): ''' Method for input disallowing special characters, with optionally specifiable regex pattern and error message. ''' result = '' requiredFlag = True ...	[ "def", "pattern_input", "(", "self", ",", "question", ",", "message", "=", "'Invalid entry'", ",", "pattern", "=", "'^[a-zA-Z0-9_ ]+$'", ",", "default", "=", "''", ",", "required", "=", "True", ")", ":", "result", "=", "''", "requiredFlag", "=", "True", "w...	42.73913	0.00398
def p_base_type(self, p): # noqa '''base_type : BOOL annotations \| BYTE annotations \| I8 annotations \| I16 annotations \| I32 annotations \| I64 annotations \| DOUBLE annotations ...	[ "def", "p_base_type", "(", "self", ",", "p", ")", ":", "# noqa", "name", "=", "p", "[", "1", "]", "if", "name", "==", "'i8'", ":", "name", "=", "'byte'", "p", "[", "0", "]", "=", "ast", ".", "PrimitiveType", "(", "name", ",", "p", "[", "2", "...	31.25	0.003883
def lookup(self): """ Prints name, author, size and age """ print "%s by %s, size: %s, uploaded %s ago" % (self.name, self.author, self.size, self.age)	[ "def", "lookup", "(", "self", ")", ":", "print", "\"%s by %s, size: %s, uploaded %s ago\"", "%", "(", "self", ".", "name", ",", "self", ".", "author", ",", "self", ".", "size", ",", "self", ".", "age", ")" ]	38.833333	0.008403
def validatefeatures(self,features): """Returns features in validated form, or raises an Exception. Mostly for internal use""" validatedfeatures = [] for feature in features: if isinstance(feature, int) or isinstance(feature, float): validatedfeatures.append( str(feat...	[ "def", "validatefeatures", "(", "self", ",", "features", ")", ":", "validatedfeatures", "=", "[", "]", "for", "feature", "in", "features", ":", "if", "isinstance", "(", "feature", ",", "int", ")", "or", "isinstance", "(", "feature", ",", "float", ")", ":...	53.538462	0.012712
def run_reaction_production_check(self, model, solver, threshold, implicit_sinks=True): """Run reaction production check method.""" prob = solver.create_problem() # Create flux variables v = prob.namespace() for reaction_id in model.reaction...	[ "def", "run_reaction_production_check", "(", "self", ",", "model", ",", "solver", ",", "threshold", ",", "implicit_sinks", "=", "True", ")", ":", "prob", "=", "solver", ".", "create_problem", "(", ")", "# Create flux variables", "v", "=", "prob", ".", "namespa...	41.59322	0.001194
def extract_all(zipfile, dest_folder): """ reads the zip file, determines compression and unzips recursively until source files are extracted """ z = ZipFile(zipfile) print(z) z.extract(dest_folder)	[ "def", "extract_all", "(", "zipfile", ",", "dest_folder", ")", ":", "z", "=", "ZipFile", "(", "zipfile", ")", "print", "(", "z", ")", "z", ".", "extract", "(", "dest_folder", ")" ]	24.888889	0.012931
def reduce_path(path): """Reduce absolute path to relative (if shorter) for easier readability.""" relative_path = os.path.relpath(path) if len(relative_path) < len(path): return relative_path else: return path	[ "def", "reduce_path", "(", "path", ")", ":", "relative_path", "=", "os", ".", "path", ".", "relpath", "(", "path", ")", "if", "len", "(", "relative_path", ")", "<", "len", "(", "path", ")", ":", "return", "relative_path", "else", ":", "return", "path" ...	33.714286	0.004132
def get_server_api(token=None, site=None, cls=None, config=None, **kwargs): """ Get the anaconda server api class """ if not cls: from binstar_client import Binstar cls = Binstar config = config if config is not None else get_config(site=site) url = config.get('url', DEFAULT_UR...	[ "def", "get_server_api", "(", "token", "=", "None", ",", "site", "=", "None", ",", "cls", "=", "None", ",", "config", "=", "None", ",", "", "", "kwargs", ")", ":", "if", "not", "cls", ":", "from", "binstar_client", "import", "Binstar", "cls", "=", ...	33.464286	0.002075
def _read_config(self, filename=None): """ Read the user configuration """ if filename: self._config_filename = filename else: try: import appdirs except ImportError: raise Exception("Missing dependency for deter...	[ "def", "_read_config", "(", "self", ",", "filename", "=", "None", ")", ":", "if", "filename", ":", "self", ".", "_config_filename", "=", "filename", "else", ":", "try", ":", "import", "appdirs", "except", "ImportError", ":", "raise", "Exception", "(", "\"M...	40.235294	0.005714
def api_method(self): """ Returns the api method to `send` the current API Object type """ if not self._api_method: raise NotImplementedError() return getattr(self.api, self._api_method)	[ "def", "api_method", "(", "self", ")", ":", "if", "not", "self", ".", "_api_method", ":", "raise", "NotImplementedError", "(", ")", "return", "getattr", "(", "self", ".", "api", ",", "self", ".", "_api_method", ")" ]	43.6	0.009009
def append_dynamics(self, t, dynamics, canvas=0, separate=False, color='blue'): """! @brief Append several dynamics to canvas or canvases (defined by 'canvas' and 'separate' arguments). @param[in] t (list): Time points that corresponds to dynamic values and considered on a X axis. ...	[ "def", "append_dynamics", "(", "self", ",", "t", ",", "dynamics", ",", "canvas", "=", "0", ",", "separate", "=", "False", ",", "color", "=", "'blue'", ")", ":", "description", "=", "dynamic_descr", "(", "canvas", ",", "t", ",", "dynamics", ",", "separa...	72.111111	0.010646
def _get_level(current_level, new_intention): """ Map GreyNoise intentions to Cortex maliciousness levels. Accept a Cortex level and a GreyNoise intention, the return the more malicious of the two. :param current_level: A Cortex maliciousness level https://github.com/TheHive...	[ "def", "_get_level", "(", "current_level", ",", "new_intention", ")", ":", "intention_level_map", "=", "OrderedDict", "(", "[", "(", "'info'", ",", "'info'", ")", ",", "(", "'benign'", ",", "'safe'", ")", ",", "(", "'suspicious'", ",", "'suspicious'", ")", ...	42	0.00321
def seek(self, pos, whence=_SEEK_SET): """Set the current position of this file. :Parameters: - `pos`: the position (or offset if using relative positioning) to seek to - `whence` (optional): where to seek from. :attr:`os.SEEK_SET` (``0``) for absolute file ...	[ "def", "seek", "(", "self", ",", "pos", ",", "whence", "=", "_SEEK_SET", ")", ":", "if", "whence", "==", "_SEEK_SET", ":", "new_pos", "=", "pos", "elif", "whence", "==", "_SEEK_CUR", ":", "new_pos", "=", "self", ".", "__position", "+", "pos", "elif", ...	36	0.002081
def _prt_results(self, goea_results): """Print GOEA results to the screen.""" min_ratio = self.args.ratio if min_ratio is not None: assert 1 <= min_ratio <= 2 self.objgoea.print_date(min_ratio=min_ratio, pval=self.args.pval) results_adj = self.objgoea.get_adj_records(...	[ "def", "_prt_results", "(", "self", ",", "goea_results", ")", ":", "min_ratio", "=", "self", ".", "args", ".", "ratio", "if", "min_ratio", "is", "not", "None", ":", "assert", "1", "<=", "min_ratio", "<=", "2", "self", ".", "objgoea", ".", "print_date", ...	47.153846	0.0064
def draw(self, pen, contours=True, components=True): """ Draw the glyph's outline data (contours and components) to the given :ref:`type-pen`. >>> glyph.draw(pen) If ``contours`` is set to ``False``, the glyph's contours will not be drawn. >>> glyph.dra...	[ "def", "draw", "(", "self", ",", "pen", ",", "contours", "=", "True", ",", "components", "=", "True", ")", ":", "if", "contours", ":", "for", "contour", "in", "self", ":", "contour", ".", "draw", "(", "pen", ")", "if", "components", ":", "for", "co...	29.304348	0.002874
def _get_key_by_keyid(keyid): """Get a key via HTTPS from the Ubuntu keyserver. Different key ID formats are supported by SKS keyservers (the longer ones are more secure, see "dead beef attack" and https://evil32.com/). Since HTTPS is used, if SSLBump-like HTTPS proxies are in place, they will imper...	[ "def", "_get_key_by_keyid", "(", "keyid", ")", ":", "# options=mr - machine-readable output (disables html wrappers)", "keyserver_url", "=", "(", "'https://keyserver.ubuntu.com'", "'/pks/lookup?op=get&options=mr&exact=on&search=0x{}'", ")", "curl_cmd", "=", "[", "'curl'", ",", "k...	53.823529	0.000537
def nvmlDeviceGetTotalEccErrors(handle, errorType, counterType): r""" /** * Retrieves the total ECC error counts for the device. * * For Fermi &tm; or newer fully supported devices. * Only applicable to devices with ECC. * Requires \a NVML_INFOROM_ECC version 1.0 or higher. * Requi...	[ "def", "nvmlDeviceGetTotalEccErrors", "(", "handle", ",", "errorType", ",", "counterType", ")", ":", "c_count", "=", "c_ulonglong", "(", ")", "fn", "=", "_nvmlGetFunctionPointer", "(", "\"nvmlDeviceGetTotalEccErrors\"", ")", "ret", "=", "fn", "(", "handle", ",", ...	53	0.007601
def _run_chunk(self, chunk, kernel_options, device_options, tuning_options): """Benchmark a single kernel instance in the parameter space""" #detect language and create high-level device interface self.dev = DeviceInterface(kernel_options.kernel_string, iterations=tuning_options.iterations, **d...	[ "def", "_run_chunk", "(", "self", ",", "chunk", ",", "kernel_options", ",", "device_options", ",", "tuning_options", ")", ":", "#detect language and create high-level device interface", "self", ".", "dev", "=", "DeviceInterface", "(", "kernel_options", ".", "kernel_stri...	37	0.007684
def get_routertypes(self, context, filters=None, fields=None, sorts=None, limit=None, marker=None, page_reverse=False): """Lists defined router types.""" pass	[ "def", "get_routertypes", "(", "self", ",", "context", ",", "filters", "=", "None", ",", "fields", "=", "None", ",", "sorts", "=", "None", ",", "limit", "=", "None", ",", "marker", "=", "None", ",", "page_reverse", "=", "False", ")", ":", "pass" ]	43.6	0.018018
def require_condition(cls, expr, message, format_args, *format_kwds): """ used to assert a certain state. If the expression renders a false value, an exception will be raised with the supplied message :param: message: The failure message to attach to the raised Buzz :param...	[ "def", "require_condition", "(", "cls", ",", "expr", ",", "message", ",", "", "format_args", ",", "", "", "format_kwds", ")", ":", "if", "not", "expr", ":", "raise", "cls", "(", "message", ",", "", "format_args", ",", "", "", "format_kwds", ")" ]	51.916667	0.003155
def update(self, callback=None, errback=None, parent=True, **kwargs): """ Update address configuration. Pass a list of keywords and their values to update. For the list of keywords available for address configuration, see :attr:`ns1.rest.ipam.Addresses.INT_FIELDS` and :attr:`ns1.rest.ipam.Addres...	[ "def", "update", "(", "self", ",", "callback", "=", "None", ",", "errback", "=", "None", ",", "parent", "=", "True", ",", "", "", "kwargs", ")", ":", "if", "not", "self", ".", "data", ":", "raise", "AddressException", "(", "'Address not loaded'", ")"...	47.1875	0.004543
def session(self): """ This is what you should use to make requests. It sill authenticate for you. :return: requests.sessions.Session """ if not self._session: self._session = requests.Session() self._session.headers.update(dict(Authorization='Bearer {0}'...	[ "def", "session", "(", "self", ")", ":", "if", "not", "self", ".", "_session", ":", "self", ".", "_session", "=", "requests", ".", "Session", "(", ")", "self", ".", "_session", ".", "headers", ".", "update", "(", "dict", "(", "Authorization", "=", "'...	40.222222	0.010811
def uniqify(list_): "inefficient on long lists; short lists only. preserves order." a=[] for x in list_: if x not in a: a.append(x) return a	[ "def", "uniqify", "(", "list_", ")", ":", "a", "=", "[", "]", "for", "x", "in", "list_", ":", "if", "x", "not", "in", "a", ":", "a", ".", "append", "(", "x", ")", "return", "a" ]	24.5	0.046053
def get_times_from_utterance(utterance: str, char_offset_to_token_index: Dict[int, int], indices_of_approximate_words: Set[int]) -> Dict[str, List[int]]: """ Given an utterance, we get the numbers that correspond to times and convert them to values t...	[ "def", "get_times_from_utterance", "(", "utterance", ":", "str", ",", "char_offset_to_token_index", ":", "Dict", "[", "int", ",", "int", "]", ",", "indices_of_approximate_words", ":", "Set", "[", "int", "]", ")", "->", "Dict", "[", "str", ",", "List", "[", ...	49.243902	0.003885
def check(cls, model, require_extra=False): """Check whether the provided model has this capability. By default, uses isinstance. If `require_extra`, also requires that an instance check be present in `model.extra_capability_checks`. """ class_capable = isinstance(model, cls) ...	[ "def", "check", "(", "cls", ",", "model", ",", "require_extra", "=", "False", ")", ":", "class_capable", "=", "isinstance", "(", "model", ",", "cls", ")", "f_name", "=", "model", ".", "extra_capability_checks", ".", "get", "(", "cls", ",", "None", ")", ...	35.45	0.002747
def is_local_source(filename, modname, experiment_path): """Check if a module comes from the given experiment path. Check if a module, given by name and filename, is from (a subdirectory of ) the given experiment path. This is used to determine if the module is a local source file, or rather a pack...	[ "def", "is_local_source", "(", "filename", ",", "modname", ",", "experiment_path", ")", ":", "if", "not", "is_subdir", "(", "filename", ",", "experiment_path", ")", ":", "return", "False", "rel_path", "=", "os", ".", "path", ".", "relpath", "(", "filename", ...	34.72973	0.000757
def _get_method_wrappers(cls): """ Find the appropriate operation-wrappers to use when defining flex/special arithmetic, boolean, and comparison operations with the given class. Parameters ---------- cls : class Returns ------- arith_flex : function or None comp_flex : function...	[ "def", "_get_method_wrappers", "(", "cls", ")", ":", "if", "issubclass", "(", "cls", ",", "ABCSparseSeries", ")", ":", "# Be sure to catch this before ABCSeries and ABCSparseArray,", "# as they will both come see SparseSeries as a subclass", "arith_flex", "=", "_flex_method_SERIE...	36.403509	0.000469
def match(self, p_todo): """ Performs a match on a key:value tag in the todo. First it tries to convert the value and the user-entered expression to a date and makes a comparison if it succeeds, based on the given operator (default ==). Upon failure, it falls back to con...	[ "def", "match", "(", "self", ",", "p_todo", ")", ":", "def", "resort_to_grep_filter", "(", ")", ":", "grep", "=", "GrepFilter", "(", "self", ".", "expression", ")", "return", "grep", ".", "match", "(", "p_todo", ")", "if", "not", "self", ".", "key", ...	37.139535	0.00122
def linefeed(self): """Perform an index and, if :data:`~pyte.modes.LNM` is set, a carriage return. """ self.index() if mo.LNM in self.mode: self.carriage_return()	[ "def", "linefeed", "(", "self", ")", ":", "self", ".", "index", "(", ")", "if", "mo", ".", "LNM", "in", "self", ".", "mode", ":", "self", ".", "carriage_return", "(", ")" ]	26	0.009302
def delete_table_rate_rule_by_id(cls, table_rate_rule_id, **kwargs): """Delete TableRateRule Delete an instance of TableRateRule by its ID. This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async=True >>> thread = api.dele...	[ "def", "delete_table_rate_rule_by_id", "(", "cls", ",", "table_rate_rule_id", ",", "", "", "kwargs", ")", ":", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async'", ")", ":", "return", "cls", ".", "_delete...	45.238095	0.006186
def as_items(self, decode=False): """ Return a list of 2-tuples consisting of key/score. """ items = self.database.zrange(self.key, 0, -1, withscores=True) if decode: items = [(_decode(k), score) for k, score in items] return items	[ "def", "as_items", "(", "self", ",", "decode", "=", "False", ")", ":", "items", "=", "self", ".", "database", ".", "zrange", "(", "self", ".", "key", ",", "0", ",", "-", "1", ",", "withscores", "=", "True", ")", "if", "decode", ":", "items", "=",...	35.5	0.006873
def _add_externalData(self): """ Always add a ``<c:autoUpdate val="0"/>`` child so auto-updating behavior is off by default. """ externalData = self._new_externalData() externalData._add_autoUpdate(val=False) self._insert_externalData(externalData) return ...	[ "def", "_add_externalData", "(", "self", ")", ":", "externalData", "=", "self", ".", "_new_externalData", "(", ")", "externalData", ".", "_add_autoUpdate", "(", "val", "=", "False", ")", "self", ".", "_insert_externalData", "(", "externalData", ")", "return", ...	36	0.006024
def create_map(self, pix): """Create a new map with reference pixel coordinates shifted to the pixel coordinates ``pix``. Parameters ---------- pix : `~numpy.ndarray` Reference pixel of new map. Returns ------- out_map : `~numpy.ndarray` ...	[ "def", "create_map", "(", "self", ",", "pix", ")", ":", "k0", "=", "self", ".", "_m0", ".", "shift_to_coords", "(", "pix", ")", "k1", "=", "self", ".", "_m1", ".", "shift_to_coords", "(", "pix", ")", "k0", "[", "np", ".", "isfinite", "(", "k1", "...	26.65	0.005435
def validate_qubit_list(qubit_list): """ Check the validity of qubits for the payload. :param list\|range qubit_list: List of qubits to be validated. """ if not isinstance(qubit_list, (list, range)): raise TypeError("run_items must be a list") if any(not isinstance(i, integer_types) or i...	[ "def", "validate_qubit_list", "(", "qubit_list", ")", ":", "if", "not", "isinstance", "(", "qubit_list", ",", "(", "list", ",", "range", ")", ")", ":", "raise", "TypeError", "(", "\"run_items must be a list\"", ")", "if", "any", "(", "not", "isinstance", "("...	39.727273	0.002237
def assert_is_lon(val): """ Checks it the given value is a feasible decimal longitude :param val: value to be checked :type val: int of float :returns: `None` :raises: ValueError if value is out of longitude boundaries, AssertionError if type is wrong """ assert type(val) is float...	[ "def", "assert_is_lon", "(", "val", ")", ":", "assert", "type", "(", "val", ")", "is", "float", "or", "type", "(", "val", ")", "is", "int", ",", "\"Value must be a number\"", "if", "val", "<", "-", "180.0", "or", "val", ">", "180.0", ":", "raise", "V...	35.615385	0.004211
def duplicate_line(self): """ Duplicates the line under the cursor. If multiple lines are selected, only the last one is duplicated. """ cursor = self.textCursor() assert isinstance(cursor, QtGui.QTextCursor) has_selection = True if not cursor.hasSelection...	[ "def", "duplicate_line", "(", "self", ")", ":", "cursor", "=", "self", ".", "textCursor", "(", ")", "assert", "isinstance", "(", "cursor", ",", "QtGui", ".", "QTextCursor", ")", "has_selection", "=", "True", "if", "not", "cursor", ".", "hasSelection", "(",...	35.583333	0.002281
def get_object_ids(model, meteor_ids): """Return all object IDs for the given meteor_ids.""" if model is ObjectMapping: # this doesn't make sense - raise TypeError raise TypeError("Can't map ObjectMapping instances through self.") # Django model._meta is now public API -> pylint: disable=W02...	[ "def", "get_object_ids", "(", "model", ",", "meteor_ids", ")", ":", "if", "model", "is", "ObjectMapping", ":", "# this doesn't make sense - raise TypeError", "raise", "TypeError", "(", "\"Can't map ObjectMapping instances through self.\"", ")", "# Django model._meta is now publ...	36.741935	0.000855
def _perform_validation(self, path, value, results): """ Validates a given value against the schema and configured validation rules. :param path: a dot notation path to the value. :param value: a value to be validated. :param results: a list with validation results to add new ...	[ "def", "_perform_validation", "(", "self", ",", "path", ",", "value", ",", "results", ")", ":", "name", "=", "path", "if", "path", "!=", "None", "else", "\"value\"", "value", "=", "ObjectReader", ".", "get_value", "(", "value", ")", "super", "(", "MapSch...	34.771429	0.007194
def _to_dict(self): """Return a json dictionary representing this model.""" _dict = {} if hasattr(self, 'deployment') and self.deployment is not None: _dict['deployment'] = self.deployment if hasattr(self, 'user_id') and self.user_id is not None: _dict['user_id'] ...	[ "def", "_to_dict", "(", "self", ")", ":", "_dict", "=", "{", "}", "if", "hasattr", "(", "self", ",", "'deployment'", ")", "and", "self", ".", "deployment", "is", "not", "None", ":", "_dict", "[", "'deployment'", "]", "=", "self", ".", "deployment", "...	43.5	0.005634
def adjoin(space: int, *lists: Sequence[str]) -> str: """Glue together two sets of strings using `space`.""" lengths = [max(map(len, x)) + space for x in lists[:-1]] # not the last one lengths.append(max(map(len, lists[-1]))) max_len = max(map(len, lists)) chains = ( itertools.chain( ...	[ "def", "adjoin", "(", "space", ":", "int", ",", "*", "lists", ":", "Sequence", "[", "str", "]", ")", "->", "str", ":", "lengths", "=", "[", "max", "(", "map", "(", "len", ",", "x", ")", ")", "+", "space", "for", "x", "in", "lists", "[", ":", ...	34.866667	0.001862
def hasnew(self,allowempty=False): """Does the correction define new corrected annotations?""" for e in self.select(New,None,False, False): if not allowempty and len(e) == 0: continue return True return False	[ "def", "hasnew", "(", "self", ",", "allowempty", "=", "False", ")", ":", "for", "e", "in", "self", ".", "select", "(", "New", ",", "None", ",", "False", ",", "False", ")", ":", "if", "not", "allowempty", "and", "len", "(", "e", ")", "==", "0", ...	42	0.027237
def next_window(self, widget, data=None): """ Function opens the run Window who executes the assistant project creation """ # check whether deps-only is selected deps_only = ('deps_only' in self.args and self.args['deps_only']['checkbox'].get_active()) # preserve...	[ "def", "next_window", "(", "self", ",", "widget", ",", "data", "=", "None", ")", ":", "# check whether deps-only is selected", "deps_only", "=", "(", "'deps_only'", "in", "self", ".", "args", "and", "self", ".", "args", "[", "'deps_only'", "]", "[", "'checkb...	45.516667	0.002867
def rankagg_R(df, method="stuart"): """Return aggregated ranks as implemented in the RobustRankAgg R package. This function is now deprecated. References: Kolde et al., 2012, DOI: 10.1093/bioinformatics/btr709 Stuart et al., 2003, DOI: 10.1126/science.1087447 Parameters --------...	[ "def", "rankagg_R", "(", "df", ",", "method", "=", "\"stuart\"", ")", ":", "tmpdf", "=", "NamedTemporaryFile", "(", ")", "tmpscript", "=", "NamedTemporaryFile", "(", "mode", "=", "\"w\"", ")", "tmpranks", "=", "NamedTemporaryFile", "(", ")", "df", ".", "to...	30.051282	0.01405
def rhochange(self): """Re-factorise matrix when rho changes""" self.lu, self.piv = sl.lu_factor(self.Z, self.rho) self.lu = np.asarray(self.lu, dtype=self.dtype)	[ "def", "rhochange", "(", "self", ")", ":", "self", ".", "lu", ",", "self", ".", "piv", "=", "sl", ".", "lu_factor", "(", "self", ".", "Z", ",", "self", ".", "rho", ")", "self", ".", "lu", "=", "np", ".", "asarray", "(", "self", ".", "lu", ","...	36.6	0.010695

def user_id(self): """ Return the ID of the current request's user """ # This needs flask-login to be installed if not has_flask_login: return # and the actual login manager installed if not hasattr(current_app, 'login_manager'): return ...

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def merge(self, df: pd.DataFrame, on: str, how: str="outer", **kwargs): """ Set the main dataframe from the current dataframe and the passed dataframe :param df: the pandas dataframe to merge :type df: pd.DataFrame :param on: param for ``pd.merge`` :type on: str ...

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def guess_labels(self, doc): """ return a prediction of label names """ doc = doc.clone() # make sure it can be serialized safely return self.index.guess_labels(doc)

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def _add_agents(self, agent_definitions): """Add specified agents to the client. Set up their shared memory and sensor linkages. Does not spawn an agent in the Holodeck, this is only for documenting and accessing already existing agents. This is an internal function. Positional Arguments...

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def help_box(): """A simple HTML help dialog box using the distribution data files.""" style = wx.DEFAULT_DIALOG_STYLE | wx.RESIZE_BORDER dialog_box = wx.Dialog(None, wx.ID_ANY, HELP_TITLE, style=style, size=(620, 450)) html_widget = HtmlHelp(dialog_box, wx.ID_ANY) html_wi...

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def force_process_ordered(self): """ Take any messages from replica that have been ordered and process them, this should be done rarely, like before catchup starts so a more current LedgerStatus can be sent. can be called either 1. when node is participating, this happens...

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def _execute(self, sql, params): """Execute statement with reconnecting by connection closed error codes. 2006 (CR_SERVER_GONE_ERROR): MySQL server has gone away 2013 (CR_SERVER_LOST): Lost connection to MySQL server during query 2055 (CR_SERVER_LOST_EXTENDED): Lost connection to MySQL ...

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def _TTA(learn:Learner, beta:float=0.4, scale:float=1.35, ds_type:DatasetType=DatasetType.Valid, with_loss:bool=False) -> Tensors: "Applies TTA to predict on `ds_type` dataset." preds,y = learn.get_preds(ds_type) all_preds = list(learn.tta_only(scale=scale, ds_type=ds_type)) avg_preds = torch.stack(all_...

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def temp_filename(self): """Return a unique tempfile name. """ # TODO: it would be nice to get this to behave more like a # context so we can make sure these temporary files are # removed, regardless of whether an error occurs or the # program is terminated. handl...

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def get_by_id(self, id_networkv6): """Get IPv6 network :param id_networkv4: ID for NetworkIPv6 :return: IPv6 Network """ uri = 'api/networkv4/%s/' % id_networkv6 return super(ApiNetworkIPv6, self).get(uri)

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def add_sub_resource(self, relative_id, sub_resource): """Add sub resource""" existing_sub_resources = self.resources.get(sub_resource.RELATIVE_PATH_TEMPLATE, defaultdict(list)) existing_sub_resources[relative_id].append(sub_resource) self.resources.update({sub_resource.RELATIVE_PATH_TEM...

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def search_report_event_for_facets(self, **kwargs): # noqa: E501 """Lists the values of one or more facets over the customer's events # noqa: E501 # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True ...

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def ping(self): """Attempt to detect if a device at this address is present on the I2C bus. Will send out the device's address for writing and verify an ACK is received. Returns true if the ACK is received, and false if not. """ self._idle() self._transaction_start() ...

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def create_sensor(sensor_id, sensor, async_set_state_callback): """Simplify creating sensor by not needing to know type.""" if sensor['type'] in CONSUMPTION: return Consumption(sensor_id, sensor) if sensor['type'] in CARBONMONOXIDE: return CarbonMonoxide(sensor_id, sensor) if sensor['typ...

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def _remove_empty_items(d, required): """Return a new dict with any empty items removed. Note that this is not a deep check. If d contains a dictionary which itself contains empty items, those are never checked. This method exists to make to_serializable() functions cleaner. We could revisit this some day, ...

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def remove_ipv4addr(self, ipv4addr): """Remove an IPv4 address from the host. :param str ipv4addr: The IP address to remove """ for addr in self.ipv4addrs: if ((isinstance(addr, dict) and addr['ipv4addr'] == ipv4addr) or (isinstance(addr, HostIPv4) and addr....

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def calc_datastore(request, job_id): """ Download a full datastore file. :param request: `django.http.HttpRequest` object. :param job_id: The id of the requested datastore :returns: A `django.http.HttpResponse` containing the content of the requested artifact, if pre...

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def decode(self, descriptor): """ Produce a list of dictionaries for each dimension in this transcoder """ i = iter(descriptor) n = len(self._schema) # Add the name key to our schema schema = self._schema + ('name',) # For each dimensions, generator takes n items off ite...

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def ssgsea(data, gene_sets, outdir="ssGSEA_", sample_norm_method='rank', min_size=15, max_size=2000, permutation_num=0, weighted_score_type=0.25, scale=True, ascending=False, processes=1, figsize=(7,6), format='pdf', graph_num=20, no_plot=False, seed=None, verbose=False): """Run Gene Set Enric...

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def keras_dropout(layer, rate): '''keras dropout layer. ''' from keras import layers input_dim = len(layer.input.shape) if input_dim == 2: return layers.SpatialDropout1D(rate) elif input_dim == 3: return layers.SpatialDropout2D(rate) elif input_dim == 4: return laye...

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def _compare_replication(current, desired, region, key, keyid, profile): ''' Replication accepts a non-ARN role name, but always returns an ARN ''' if desired is not None and desired.get('Role'): desired = copy.deepcopy(desired) desired['Role'] = _get_role_arn(desired['Role'], ...

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def _get_unique_child_value(xtag, eltname): """Get the text content of the unique child element under xtag with name eltname""" xelt = _get_unique_child(xtag, eltname) if xelt is None: return None else: return xelt.text

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def app_main(self, experiment=None, last=False, new=False, verbose=False, verbosity_level=None, no_modification=False, match=False): """ The main function for parsing global arguments Parameters ---------- experiment: str The id of t...

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def get_canvas_image(self): """Get canvas image object. Returns ------- imgobj : `~ginga.canvas.types.image.NormImage` Normalized image sitting on the canvas. """ if self._imgobj is not None: return self._imgobj try: # See if...

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def getPlatformsByName(platformNames=['all'], mode=None, tags=[], excludePlatformNames=[]): """Method that recovers the names of the <Platforms> in a given list. :param platformNames: List of strings containing the possible platforms. :param mode: The mode of the search. The following can be ...

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def dispatch_submission(self, raw_msg): """Dispatch job submission to appropriate handlers.""" # ensure targets up to date: self.notifier_stream.flush() try: idents, msg = self.session.feed_identities(raw_msg, copy=False) msg = self.session.unserialize(msg, conten...

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def add(self, items): """Add messages to be managed by the leaser.""" for item in items: # Add the ack ID to the set of managed ack IDs, and increment # the size counter. if item.ack_id not in self._leased_messages: self._leased_messages[item.ack_id] =...

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def effective_nsamples(self): """The effective number of samples post burn-in that the sampler has acquired so far.""" try: act = numpy.array(list(self.acts.values())).max() except (AttributeError, TypeError): act = numpy.inf if self.burn_in is None: ...

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def _parse_req(self, req): '''Parses a request object for relevant debugging information. Only works if DEBUG is enabled. Args: req requests req object ''' if DEBUG: if req.status_code != requests.codes.ok: print(("code: {}".format(req.status_code))) print(("response {}".format(req.json()))) ...

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def supports_spatial_unit_record_type(self, spatial_unit_record_type): """Tests if the given spatial unit record type is supported. arg: spatial_unit_record_type (osid.type.Type): a spatial unit record Type return: (boolean) - ``true`` if the type is supported, ``false`` ...

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def apply_patch(self, filename, arch, build_dir=None): """ Apply a patch from the current recipe directory into the current build directory. .. versionchanged:: 0.6.0 Add ability to apply patch from any dir via kwarg `build_dir`''' """ info("Applying patch {}...

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def get_valid_times_for_job_legacy(self, num_job): """ Get the times for which the job num_job will be valid, using the method use in inspiral hipe. """ # All of this should be integers, so no rounding factors needed. shift_dur = self.curr_seg[0] + int(self.job_time_shift * num_j...

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def _convertPyval(self, oself, pyval): """ Convert a Python value to a value suitable for inserting into the database. @param oself: The object on which this descriptor is an attribute. @param pyval: The value to be converted. @return: A value legal for this column in th...

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def get_rectangle(self): """Gets the coordinates of the rectangle, in which the tree can be put. Returns: tupel: (x1, y1, x2, y2) """ rec = [self.pos[0], self.pos[1]]*2 for age in self.nodes: for node in age: # Check max/min for x/y coords...

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def get_period_queryset(self, request, period): """ Computes the queryset for a specific period and, perhaps, a request. :param request: current request being processed. :param period: current requested period. :return: a queryset """ qs = self.get_queryset(reque...

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def name(self): """ Algo name. """ if self._name is None: self._name = self.__class__.__name__ return self._name

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def _interpretMdriztabPars(rec): """ Collect task parameters from the MDRIZTAB record and update the master parameters list with those values Note that parameters read from the MDRIZTAB record must be cleaned up in a similar way that parameters read from the user interface are. """ tabd...

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def aperture_select(self, ra, dec, kwargs_aperture): """ returns a bool list if the coordinate is within the aperture (list) :param ra: :param dec: :return: """ if self._aperture_type == 'shell': bool_list = self.shell_select(ra, dec, **kwargs_aperture...

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def filter_humphrey(mesh, alpha=0.1, beta=0.5, iterations=10, laplacian_operator=None): """ Smooth a mesh in-place using laplacian smoothing and Humphrey filtering. Articles "Improved Laplacian Smoothing of Noisy Surfac...

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def set_rate_BC(self, pores, values): r""" Apply constant rate boundary conditons to the specified pore locations. This is similar to a Neumann boundary condition, but is slightly different since it's the conductance multiplied by the gradient, while Neumann conditions specify ju...

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def show_text(self, text): """A drawing operator that generates the shape from a string text, rendered according to the current font :meth:`face <set_font_face>`, font :meth:`size <set_font_size>` (font :meth:`matrix <set_font_matrix>`), and font :meth:`options <set_font_...

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def compile_regex_from_str(self, ft_str): """Given a string describing features masks for a sequence of segments, return a regex matching the corresponding strings. Args: ft_str (str): feature masks, each enclosed in square brackets, in which the features are delimited b...

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def rand_elem(seq, n=None): """returns a random element from seq n times. If n is None, it continues indefinitly""" return map(random.choice, repeat(seq, n) if n is not None else repeat(seq))

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def handleNotification(self, handle, raw_data): # pylint: disable=unused-argument,invalid-name """ gets called by the bluepy backend when using wait_for_notification """ if raw_data is None: return data = raw_data.decode("utf-8").strip(' \n\t') self._cache = data ...

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def expect_all(a, b): """\ Asserts that two iterables contain the same values. """ assert all(_a == _b for _a, _b in zip_longest(a, b))

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def vulnerability_section_header_element(feature, parent): """Retrieve vulnerability section header string from definitions.""" _ = feature, parent # NOQA header = vulnerability_section_header['string_format'] return header.capitalize()

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def remove(self, oid): """ Remove a faked HBA resource. This method also updates the 'hba-uris' property in the parent Partition resource, by removing the URI for the faked HBA resource. Parameters: oid (string): The object ID of the faked HBA resource. ...

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def all(cls, include_deactivated=False): """ Get all resources :param include_deactivated: Include deactivated resources in response :returns: list of Document instances :raises: SocketError, CouchException """ if include_deactivated: resources = yiel...

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def enqueue(self, future): """ Enqueue a future to be processed by one of the threads in the pool. The future must be bound to a worker and not have been started yet. """ future.enqueue() with self._lock: if self._shutdown: raise RuntimeError('ThreadPool has been shut down and can...

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def markdown_editor(selector): """ Enable markdown editor for given textarea. :returns: Editor template context. """ return dict( selector=selector, extra_settings=mark_safe(simplejson.dumps( dict(previewParserPath=reverse('django_markdown_preview')))))

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def _rollout_metadata(batch_env): """Metadata for rollouts.""" batch_env_shape = batch_env.observ.get_shape().as_list() batch_size = [batch_env_shape[0]] shapes_types_names = [ # TODO(piotrmilos): possibly retrieve the observation type for batch_env (batch_size + batch_env_shape[1:], batch_env.obser...

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def get_activity_ids_by_objective_banks(self, objective_bank_ids): """Gets the list of ``Activity Ids`` corresponding to a list of ``ObjectiveBanks``. arg: objective_bank_ids (osid.id.IdList): list of objective bank ``Ids`` return: (osid.id.IdList) - list of activity ``Ids`` ...

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def assign_power_curve(self, wake_losses_model='power_efficiency_curve', smoothing=False, block_width=0.5, standard_deviation_method='turbulence_intensity', smoothing_order='wind_farm_power_curves', turbulence_in...

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def disable_avatar(self): """ Temporarily disable the avatar. If :attr:`synchronize_vcard` is true, the vCard avatar is disabled (even if disabling the PEP avatar fails). This is done by setting the avatar metadata node empty and if :attr:`synchronize_vcard` is true, do...

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def kill_pid(self, pid): """Kill process by pid Args: pid (int) """ try: p = psutil.Process(pid) p.terminate() self.info_log('Killed [pid:%s][name:%s]' % (p.pid, p.name())) except psutil.NoSuchProcess: self.error_log...

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def options(self, parser, env): """Register commandline options. Implement this method for normal options behavior with protection from OptionConflictErrors. If you override this method and want the default --with-$name option to be registered, be sure to call super(). """ ...

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def pattern_input(self, question, message='Invalid entry', pattern='^[a-zA-Z0-9_ ]+$', default='',required=True): ''' Method for input disallowing special characters, with optionally specifiable regex pattern and error message. ''' result = '' requiredFlag = True ...

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def lookup(self): """ Prints name, author, size and age """ print "%s by %s, size: %s, uploaded %s ago" % (self.name, self.author, self.size, self.age)

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def validatefeatures(self,features): """Returns features in validated form, or raises an Exception. Mostly for internal use""" validatedfeatures = [] for feature in features: if isinstance(feature, int) or isinstance(feature, float): validatedfeatures.append( str(feat...

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def run_reaction_production_check(self, model, solver, threshold, implicit_sinks=True): """Run reaction production check method.""" prob = solver.create_problem() # Create flux variables v = prob.namespace() for reaction_id in model.reaction...

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def extract_all(zipfile, dest_folder): """ reads the zip file, determines compression and unzips recursively until source files are extracted """ z = ZipFile(zipfile) print(z) z.extract(dest_folder)

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def reduce_path(path): """Reduce absolute path to relative (if shorter) for easier readability.""" relative_path = os.path.relpath(path) if len(relative_path) < len(path): return relative_path else: return path

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def get_server_api(token=None, site=None, cls=None, config=None, **kwargs): """ Get the anaconda server api class """ if not cls: from binstar_client import Binstar cls = Binstar config = config if config is not None else get_config(site=site) url = config.get('url', DEFAULT_UR...

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def _read_config(self, filename=None): """ Read the user configuration """ if filename: self._config_filename = filename else: try: import appdirs except ImportError: raise Exception("Missing dependency for deter...

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def api_method(self): """ Returns the api method to `send` the current API Object type """ if not self._api_method: raise NotImplementedError() return getattr(self.api, self._api_method)

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def append_dynamics(self, t, dynamics, canvas=0, separate=False, color='blue'): """! @brief Append several dynamics to canvas or canvases (defined by 'canvas' and 'separate' arguments). @param[in] t (list): Time points that corresponds to dynamic values and considered on a X axis. ...

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def _get_level(current_level, new_intention): """ Map GreyNoise intentions to Cortex maliciousness levels. Accept a Cortex level and a GreyNoise intention, the return the more malicious of the two. :param current_level: A Cortex maliciousness level https://github.com/TheHive...

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def seek(self, pos, whence=_SEEK_SET): """Set the current position of this file. :Parameters: - `pos`: the position (or offset if using relative positioning) to seek to - `whence` (optional): where to seek from. :attr:`os.SEEK_SET` (``0``) for absolute file ...

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def _prt_results(self, goea_results): """Print GOEA results to the screen.""" min_ratio = self.args.ratio if min_ratio is not None: assert 1 <= min_ratio <= 2 self.objgoea.print_date(min_ratio=min_ratio, pval=self.args.pval) results_adj = self.objgoea.get_adj_records(...

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def draw(self, pen, contours=True, components=True): """ Draw the glyph's outline data (contours and components) to the given :ref:`type-pen`. >>> glyph.draw(pen) If ``contours`` is set to ``False``, the glyph's contours will not be drawn. >>> glyph.dra...

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def _get_key_by_keyid(keyid): """Get a key via HTTPS from the Ubuntu keyserver. Different key ID formats are supported by SKS keyservers (the longer ones are more secure, see "dead beef attack" and https://evil32.com/). Since HTTPS is used, if SSLBump-like HTTPS proxies are in place, they will imper...

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def nvmlDeviceGetTotalEccErrors(handle, errorType, counterType): r""" /** * Retrieves the total ECC error counts for the device. * * For Fermi &tm; or newer fully supported devices. * Only applicable to devices with ECC. * Requires \a NVML_INFOROM_ECC version 1.0 or higher. * Requi...

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def _run_chunk(self, chunk, kernel_options, device_options, tuning_options): """Benchmark a single kernel instance in the parameter space""" #detect language and create high-level device interface self.dev = DeviceInterface(kernel_options.kernel_string, iterations=tuning_options.iterations, **d...

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def get_routertypes(self, context, filters=None, fields=None, sorts=None, limit=None, marker=None, page_reverse=False): """Lists defined router types.""" pass

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def require_condition(cls, expr, message, *format_args, **format_kwds): """ used to assert a certain state. If the expression renders a false value, an exception will be raised with the supplied message :param: message: The failure message to attach to the raised Buzz :param...

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def update(self, callback=None, errback=None, parent=True, **kwargs): """ Update address configuration. Pass a list of keywords and their values to update. For the list of keywords available for address configuration, see :attr:`ns1.rest.ipam.Addresses.INT_FIELDS` and :attr:`ns1.rest.ipam.Addres...

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def session(self): """ This is what you should use to make requests. It sill authenticate for you. :return: requests.sessions.Session """ if not self._session: self._session = requests.Session() self._session.headers.update(dict(Authorization='Bearer {0}'...

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def uniqify(list_): "inefficient on long lists; short lists only. preserves order." a=[] for x in list_: if x not in a: a.append(x) return a

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def get_times_from_utterance(utterance: str, char_offset_to_token_index: Dict[int, int], indices_of_approximate_words: Set[int]) -> Dict[str, List[int]]: """ Given an utterance, we get the numbers that correspond to times and convert them to values t...

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def check(cls, model, require_extra=False): """Check whether the provided model has this capability. By default, uses isinstance. If `require_extra`, also requires that an instance check be present in `model.extra_capability_checks`. """ class_capable = isinstance(model, cls) ...

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def is_local_source(filename, modname, experiment_path): """Check if a module comes from the given experiment path. Check if a module, given by name and filename, is from (a subdirectory of ) the given experiment path. This is used to determine if the module is a local source file, or rather a pack...

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def _get_method_wrappers(cls): """ Find the appropriate operation-wrappers to use when defining flex/special arithmetic, boolean, and comparison operations with the given class. Parameters ---------- cls : class Returns ------- arith_flex : function or None comp_flex : function...

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def match(self, p_todo): """ Performs a match on a key:value tag in the todo. First it tries to convert the value and the user-entered expression to a date and makes a comparison if it succeeds, based on the given operator (default ==). Upon failure, it falls back to con...

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def linefeed(self): """Perform an index and, if :data:`~pyte.modes.LNM` is set, a carriage return. """ self.index() if mo.LNM in self.mode: self.carriage_return()

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def delete_table_rate_rule_by_id(cls, table_rate_rule_id, **kwargs): """Delete TableRateRule Delete an instance of TableRateRule by its ID. This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async=True >>> thread = api.dele...

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def as_items(self, decode=False): """ Return a list of 2-tuples consisting of key/score. """ items = self.database.zrange(self.key, 0, -1, withscores=True) if decode: items = [(_decode(k), score) for k, score in items] return items

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def _add_externalData(self): """ Always add a ``<c:autoUpdate val="0"/>`` child so auto-updating behavior is off by default. """ externalData = self._new_externalData() externalData._add_autoUpdate(val=False) self._insert_externalData(externalData) return ...

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def create_map(self, pix): """Create a new map with reference pixel coordinates shifted to the pixel coordinates ``pix``. Parameters ---------- pix : `~numpy.ndarray` Reference pixel of new map. Returns ------- out_map : `~numpy.ndarray` ...

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def validate_qubit_list(qubit_list): """ Check the validity of qubits for the payload. :param list|range qubit_list: List of qubits to be validated. """ if not isinstance(qubit_list, (list, range)): raise TypeError("run_items must be a list") if any(not isinstance(i, integer_types) or i...

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def assert_is_lon(val): """ Checks it the given value is a feasible decimal longitude :param val: value to be checked :type val: int of float :returns: `None` :raises: *ValueError* if value is out of longitude boundaries, *AssertionError* if type is wrong """ assert type(val) is float...

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def duplicate_line(self): """ Duplicates the line under the cursor. If multiple lines are selected, only the last one is duplicated. """ cursor = self.textCursor() assert isinstance(cursor, QtGui.QTextCursor) has_selection = True if not cursor.hasSelection...

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def get_object_ids(model, meteor_ids): """Return all object IDs for the given meteor_ids.""" if model is ObjectMapping: # this doesn't make sense - raise TypeError raise TypeError("Can't map ObjectMapping instances through self.") # Django model._meta is now public API -> pylint: disable=W02...

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def _perform_validation(self, path, value, results): """ Validates a given value against the schema and configured validation rules. :param path: a dot notation path to the value. :param value: a value to be validated. :param results: a list with validation results to add new ...

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def _to_dict(self): """Return a json dictionary representing this model.""" _dict = {} if hasattr(self, 'deployment') and self.deployment is not None: _dict['deployment'] = self.deployment if hasattr(self, 'user_id') and self.user_id is not None: _dict['user_id'] ...

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def adjoin(space: int, *lists: Sequence[str]) -> str: """Glue together two sets of strings using `space`.""" lengths = [max(map(len, x)) + space for x in lists[:-1]] # not the last one lengths.append(max(map(len, lists[-1]))) max_len = max(map(len, lists)) chains = ( itertools.chain( ...

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def hasnew(self,allowempty=False): """Does the correction define new corrected annotations?""" for e in self.select(New,None,False, False): if not allowempty and len(e) == 0: continue return True return False

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def next_window(self, widget, data=None): """ Function opens the run Window who executes the assistant project creation """ # check whether deps-only is selected deps_only = ('deps_only' in self.args and self.args['deps_only']['checkbox'].get_active()) # preserve...

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def rankagg_R(df, method="stuart"): """Return aggregated ranks as implemented in the RobustRankAgg R package. This function is now deprecated. References: Kolde et al., 2012, DOI: 10.1093/bioinformatics/btr709 Stuart et al., 2003, DOI: 10.1126/science.1087447 Parameters --------...

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def rhochange(self): """Re-factorise matrix when rho changes""" self.lu, self.piv = sl.lu_factor(self.Z, self.rho) self.lu = np.asarray(self.lu, dtype=self.dtype)

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