kejian/codesearchnet-python-pep8-full · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def is_dirty(self): """ .. todo:: docstring for is_dirty """ # Imports from ..error import RepoError as RErr # Get the return value from the dataset, complaining if repo not # bound. Using 'require_dataset' since any repo w/o a defined # 'dirty' value is just ...	[ "def", "is_dirty", "(", "self", ")", ":", "# Imports", "from", ".", ".", "error", "import", "RepoError", "as", "RErr", "# Get the return value from the dataset, complaining if repo not", "# bound. Using 'require_dataset' since any repo w/o a defined", "# 'dirty' value is just goi...	36.571429	0.007614
def area_pal(range=(1, 6)): """ Point area palette (continuous). Parameters ---------- range : tuple Numeric vector of length two, giving range of possible sizes. Should be greater than 0. Returns ------- out : function Palette function that takes a sequence of ...	[ "def", "area_pal", "(", "range", "=", "(", "1", ",", "6", ")", ")", ":", "def", "area_palette", "(", "x", ")", ":", "return", "rescale", "(", "np", ".", "sqrt", "(", "x", ")", ",", "to", "=", "range", ",", "_from", "=", "(", "0", ",", "1", ...	24.9	0.001289
def show_print_dialog(self): """Open the print dialog""" if not self.impact_function: # Now try to read the keywords and show them in the dock try: active_layer = self.iface.activeLayer() keywords = self.keyword_io.read_keywords(active_layer) ...	[ "def", "show_print_dialog", "(", "self", ")", ":", "if", "not", "self", ".", "impact_function", ":", "# Now try to read the keywords and show them in the dock", "try", ":", "active_layer", "=", "self", ".", "iface", ".", "activeLayer", "(", ")", "keywords", "=", "...	43.296296	0.000836
def to_file(self, path, precision='%.2g'): """ Create a CSV report of the trackables :param path: path to file :param precision: numeric string formatter """ table_info = self.get_table_info() def dump_rows(rows): if len(rows) > 1: for...	[ "def", "to_file", "(", "self", ",", "path", ",", "precision", "=", "'%.2g'", ")", ":", "table_info", "=", "self", ".", "get_table_info", "(", ")", "def", "dump_rows", "(", "rows", ")", ":", "if", "len", "(", "rows", ")", ">", "1", ":", "for", "row"...	47.533333	0.005039
def _write_plist(self, root): """Write plist file based on our generated tree.""" # prettify the XML indent_xml(root) tree = ElementTree.ElementTree(root) with open(self.preferences_file, "w") as prefs_file: prefs_file.write( "<?xml version=\"1.0\" en...	[ "def", "_write_plist", "(", "self", ",", "root", ")", ":", "# prettify the XML", "indent_xml", "(", "root", ")", "tree", "=", "ElementTree", ".", "ElementTree", "(", "root", ")", "with", "open", "(", "self", ".", "preferences_file", ",", "\"w\"", ")", "as"...	45.428571	0.003082
def run(self): """ Runs the given OPF task against the given Model instance """ self._logger.debug("Starting Dummy Model: modelID=%s;" % (self._modelID)) # ========================================================================= # Initialize periodic activities (e.g., for model result updates) # ...	[ "def", "run", "(", "self", ")", ":", "self", ".", "_logger", ".", "debug", "(", "\"Starting Dummy Model: modelID=%s;\"", "%", "(", "self", ".", "_modelID", ")", ")", "# =========================================================================", "# Initialize periodic activi...	37	0.012694
def align(args): """ %prog align database.fasta read1.fq [read2.fq] Wrapper for three modes of BWA - mem (default), aln, bwasw (long reads). """ valid_modes = ("bwasw", "aln", "mem") p = OptionParser(align.__doc__) p.add_option("--mode", default="mem", choices=valid_modes, help="BWA mode") ...	[ "def", "align", "(", "args", ")", ":", "valid_modes", "=", "(", "\"bwasw\"", ",", "\"aln\"", ",", "\"mem\"", ")", "p", "=", "OptionParser", "(", "align", ".", "__doc__", ")", "p", ".", "add_option", "(", "\"--mode\"", ",", "default", "=", "\"mem\"", ",...	24.176471	0.000779
def tf_smooth_eig_vec(self): """Function that returns smoothed version of min eigen vector.""" _, matrix_m = self.dual_object.get_full_psd_matrix() # Easier to think in terms of max so negating the matrix [eig_vals, eig_vectors] = tf.self_adjoint_eig(-matrix_m) exp_eig_vals = tf.exp(tf.divide(eig_va...	[ "def", "tf_smooth_eig_vec", "(", "self", ")", ":", "_", ",", "matrix_m", "=", "self", ".", "dual_object", ".", "get_full_psd_matrix", "(", ")", "# Easier to think in terms of max so negating the matrix", "[", "eig_vals", ",", "eig_vectors", "]", "=", "tf", ".", "s...	51.2	0.001279
def is_open_chunk(self, chk): """Check the chunk is free or not""" cs = self.get_chunk_status(chk) if cs & 0x4 != 0: return True return False	[ "def", "is_open_chunk", "(", "self", ",", "chk", ")", ":", "cs", "=", "self", ".", "get_chunk_status", "(", "chk", ")", "if", "cs", "&", "0x4", "!=", "0", ":", "return", "True", "return", "False" ]	30.833333	0.010526
def run(self): """Main entrypoint method. Returns ------- new_nodes : `list` Nodes to add to the doctree. """ self._env = self.state.document.settings.env nodes = [] if 'toctree' in self.options: # Insert a hidden toctree ...	[ "def", "run", "(", "self", ")", ":", "self", ".", "_env", "=", "self", ".", "state", ".", "document", ".", "settings", ".", "env", "nodes", "=", "[", "]", "if", "'toctree'", "in", "self", ".", "options", ":", "# Insert a hidden toctree", "toctree_node", ...	26.416667	0.003044
def is_link(url, processed, files): """ Determine whether or not a link should be crawled A url should not be crawled if it - Is a file - Has already been crawled Args: url: str Url to be processed processed: list[str] List of urls that have already been crawled Ret...	[ "def", "is_link", "(", "url", ",", "processed", ",", "files", ")", ":", "if", "url", "not", "in", "processed", ":", "is_file", "=", "url", ".", "endswith", "(", "BAD_TYPES", ")", "if", "is_file", ":", "files", ".", "add", "(", "url", ")", "return", ...	25.380952	0.001808
def prepare(self, inputstring, strip=False, nl_at_eof_check=False, **kwargs): """Prepare a string for processing.""" if self.strict and nl_at_eof_check and inputstring and not inputstring.endswith("\n"): end_index = len(inputstring) - 1 if inputstring else 0 raise self.make_err(C...	[ "def", "prepare", "(", "self", ",", "inputstring", ",", "strip", "=", "False", ",", "nl_at_eof_check", "=", "False", ",", "", "", "kwargs", ")", ":", "if", "self", ".", "strict", "and", "nl_at_eof_check", "and", "inputstring", "and", "not", "inputstring"...	54.25	0.006042
def workflow(ctx, client): """List or manage workflows with subcommands.""" if ctx.invoked_subcommand is None: from renku.models.refs import LinkReference names = defaultdict(list) for ref in LinkReference.iter_items(client, common_path='workflows'): names[ref.reference.name...	[ "def", "workflow", "(", "ctx", ",", "client", ")", ":", "if", "ctx", ".", "invoked_subcommand", "is", "None", ":", "from", "renku", ".", "models", ".", "refs", "import", "LinkReference", "names", "=", "defaultdict", "(", "list", ")", "for", "ref", "in", ...	36.105263	0.00142
def get_file(self, sharename, fileid): """ Get a specific file. Does not require authentication. Input: * A sharename * A fileid - must be an integer Output: * A :py:mod:`pygett.files.GettFile` object Example:: file = client.get...	[ "def", "get_file", "(", "self", ",", "sharename", ",", "fileid", ")", ":", "if", "not", "isinstance", "(", "fileid", ",", "int", ")", ":", "raise", "TypeError", "(", "\"'fileid' must be an integer\"", ")", "response", "=", "GettRequest", "(", ")", ".", "ge...	26.304348	0.00319
def temp_connect(self, hardware: hc.API): """ Connect temporarily to the specified hardware controller. This should be used as a context manager: .. code-block :: python with ctx.temp_connect(hw): # do some tasks ctx.home() # after the w...	[ "def", "temp_connect", "(", "self", ",", "hardware", ":", "hc", ".", "API", ")", ":", "old_hw", "=", "self", ".", "_hw_manager", ".", "hardware", "try", ":", "self", ".", "_hw_manager", ".", "set_hw", "(", "hardware", ")", "yield", "self", "finally", "...	32.47619	0.002849
def cancel(self, msg='', exc_type=CancelledError): """Cancels all inprogress transfers This cancels the inprogress transfers by calling cancel() on all tracked transfer coordinators. :param msg: The message to pass on to each transfer coordinator that gets cancelled. ...	[ "def", "cancel", "(", "self", ",", "msg", "=", "''", ",", "exc_type", "=", "CancelledError", ")", ":", "for", "transfer_coordinator", "in", "self", ".", "tracked_transfer_coordinators", ":", "transfer_coordinator", ".", "cancel", "(", "msg", ",", "exc_type", "...	39.692308	0.003788
def format_authors(self, format='html5', deparagraph=True, mathjax=False, smart=True, extra_args=None): """Get the document authors in the specified markup format. Parameters ---------- format : `str`, optional Output format (such as ``'html5'`` or ``'...	[ "def", "format_authors", "(", "self", ",", "format", "=", "'html5'", ",", "deparagraph", "=", "True", ",", "mathjax", "=", "False", ",", "smart", "=", "True", ",", "extra_args", "=", "None", ")", ":", "formatted_authors", "=", "[", "]", "for", "latex_aut...	40.228571	0.00208
async def xclaim(self, name: str, group: str, consumer: str, min_idle_time: int, *stream_ids): """ [NOTICE] Not officially released yet Gets ownership of one or multiple messages in the Pending Entries List of a given stream consumer group. :param name: name of the stream :para...	[ "async", "def", "xclaim", "(", "self", ",", "name", ":", "str", ",", "group", ":", "str", ",", "consumer", ":", "str", ",", "min_idle_time", ":", "int", ",", "*", "stream_ids", ")", ":", "return", "await", "self", ".", "execute_command", "(", "'XCLAIM'...	51.235294	0.007892
def create(cli, command, docker_id): """Creates waybill shims from a given command name and docker image""" content = waybill_template.format(command=command, docker_id=docker_id) waybill_dir = cli.get_waybill_dir() waybill_filename = os.path.joi...	[ "def", "create", "(", "cli", ",", "command", ",", "docker_id", ")", ":", "content", "=", "waybill_template", ".", "format", "(", "command", "=", "command", ",", "docker_id", "=", "docker_id", ")", "waybill_dir", "=", "cli", ".", "get_waybill_dir", "(", ")"...	56.888889	0.003846
def partition(thelist, n): """ Break a list into ``n`` pieces. The last list may be larger than the rest if the list doesn't break cleanly. That is:: >>> l = range(10) >>> partition(l, 2) [[0, 1, 2, 3, 4], [5, 6, 7, 8, 9]] >>> partition(l, 3) [[0, 1, 2], [3, 4, ...	[ "def", "partition", "(", "thelist", ",", "n", ")", ":", "try", ":", "n", "=", "int", "(", "n", ")", "thelist", "=", "list", "(", "thelist", ")", "except", "(", "ValueError", ",", "TypeError", ")", ":", "return", "[", "thelist", "]", "p", "=", "le...	25.962963	0.011004
def get_collections(self): """ Get names of collections from request matchdict. :return: Names of collections :rtype: list of str """ collections = self.request.matchdict['collections'].split('/')[0] collections = [coll.strip() for coll in collections.split(',')] ...	[ "def", "get_collections", "(", "self", ")", ":", "collections", "=", "self", ".", "request", ".", "matchdict", "[", "'collections'", "]", ".", "split", "(", "'/'", ")", "[", "0", "]", "collections", "=", "[", "coll", ".", "strip", "(", ")", "for", "c...	37.333333	0.005814
def build_arch(self, arch): '''Build any cython components, then install the Python module by calling setup.py install with the target Python dir. ''' Recipe.build_arch(self, arch) self.build_compiled_components(arch) self.install_python_package(arch)	[ "def", "build_arch", "(", "self", ",", "arch", ")", ":", "Recipe", ".", "build_arch", "(", "self", ",", "arch", ")", "self", ".", "build_compiled_components", "(", "arch", ")", "self", ".", "install_python_package", "(", "arch", ")" ]	41.857143	0.006689
def log(self, n=None, **kwargs): """ Run the repository log command Returns: str: output of log command (``hg log -l <n> <--kwarg=value>``) """ cmd = ['hg', 'log'] if n: cmd.extend('-l%d' % n) cmd.extend( (('--%s=%s' % (k, v)) ...	[ "def", "log", "(", "self", ",", "n", "=", "None", ",", "", "", "kwargs", ")", ":", "cmd", "=", "[", "'hg'", ",", "'log'", "]", "if", "n", ":", "cmd", ".", "extend", "(", "'-l%d'", "%", "n", ")", "cmd", ".", "extend", "(", "(", "(", "'--%s...	27	0.004773
def cmdline_params(self, structure_file_name, surface_sample_file_name): """Synthesize command line parameters e.g. [ ['struct.cssr'], ['struct.vsa'], [2.4]] """ parameters = [] parameters += [structure_file_name] parameters += [surface_sample_file_name] pm_dic...	[ "def", "cmdline_params", "(", "self", ",", "structure_file_name", ",", "surface_sample_file_name", ")", ":", "parameters", "=", "[", "]", "parameters", "+=", "[", "structure_file_name", "]", "parameters", "+=", "[", "surface_sample_file_name", "]", "pm_dict", "=", ...	29.142857	0.002372
async def set_slave_neighbors(self): '''Set neighbor environments for all the slave environments. Assumes that :attr:`neighbors` are set for this multi-environment. ''' for i, elem in enumerate(self._slave_origins): o, addr = elem r_slave = await self.env.connect(...	[ "async", "def", "set_slave_neighbors", "(", "self", ")", ":", "for", "i", ",", "elem", "in", "enumerate", "(", "self", ".", "_slave_origins", ")", ":", "o", ",", "addr", "=", "elem", "r_slave", "=", "await", "self", ".", "env", ".", "connect", "(", "...	50.5	0.001022
def open(self, url, args, *kwargs): """Open the URL and store the Browser's state in this object. All arguments are forwarded to :func:`Browser.get`. :return: Forwarded from :func:`Browser.get`. """ if self.__verbose == 1: sys.stdout.write('.') sys.stdo...	[ "def", "open", "(", "self", ",", "url", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "if", "self", ".", "__verbose", "==", "1", ":", "sys", ".", "stdout", ".", "write", "(", "'.'", ")", "sys", ".", "stdout", ".", "flush", "(", ")", "e...	35.3125	0.003448
def execute(self, timeSeries): """Creates a new TimeSeries containing the smoothed values. :return: TimeSeries object containing the smoothed TimeSeries, including the forecasted values. :rtype: TimeSeries :note: The first normalized value is chosen as the starting p...	[ "def", "execute", "(", "self", ",", "timeSeries", ")", ":", "# determine the number of values to forecast, if necessary", "self", ".", "_calculate_values_to_forecast", "(", "timeSeries", ")", "# extract the required parameters, performance improvement", "alpha", "=", "self", "....	35.890411	0.005572
def cluster_del_slots(self, slot, slots): """Set hash slots as unbound in receiving node.""" slots = (slot,) + slots if not all(isinstance(s, int) for s in slots): raise TypeError("All parameters must be of type int") fut = self.execute(b'CLUSTER', b'DELSLOTS', slots) ...	[ "def", "cluster_del_slots", "(", "self", ",", "slot", ",", "*", "slots", ")", ":", "slots", "=", "(", "slot", ",", ")", "+", "slots", "if", "not", "all", "(", "isinstance", "(", "s", ",", "int", ")", "for", "s", "in", "slots", ")", ":", "raise", ...	48	0.005848
def get_config(): """Read the configfile and return config dict. Returns ------- dict Dictionary with the content of the configpath file. """ configpath = get_configpath() if not configpath.exists(): raise IOError("Config file {} not found.".format(str(configpath))) else...	[ "def", "get_config", "(", ")", ":", "configpath", "=", "get_configpath", "(", ")", "if", "not", "configpath", ".", "exists", "(", ")", ":", "raise", "IOError", "(", "\"Config file {} not found.\"", ".", "format", "(", "str", "(", "configpath", ")", ")", ")...	27.4	0.002353
def title(self): """Extract title from a release.""" if self.event: if self.release['name']: return u'{0}: {1}'.format( self.repository['full_name'], self.release['name'] ) return u'{0} {1}'.format(self.repo_model.name, self.model.t...	[ "def", "title", "(", "self", ")", ":", "if", "self", ".", "event", ":", "if", "self", ".", "release", "[", "'name'", "]", ":", "return", "u'{0}: {1}'", ".", "format", "(", "self", ".", "repository", "[", "'full_name'", "]", ",", "self", ".", "release...	39.5	0.006192
def headinside(self): """The head inside the well Returns ------- array (length number of screens) Head inside the well for each screen """ h = self.model.head(self.xw + self.rw, self.yw, layers=self.layers) return h - se...	[ "def", "headinside", "(", "self", ")", ":", "h", "=", "self", ".", "model", ".", "head", "(", "self", ".", "xw", "+", "self", ".", "rw", ",", "self", ".", "yw", ",", "layers", "=", "self", ".", "layers", ")", "return", "h", "-", "self", ".", ...	28.5	0.014164
def _gather_group_members(group, groups, users): ''' Gather group members ''' _group = __salt__['group.info'](group) if not _group: log.warning('Group %s does not exist, ignoring.', group) return for member in _group['members']: if member not in users: users...	[ "def", "_gather_group_members", "(", "group", ",", "groups", ",", "users", ")", ":", "_group", "=", "__salt__", "[", "'group.info'", "]", "(", "group", ")", "if", "not", "_group", ":", "log", ".", "warning", "(", "'Group %s does not exist, ignoring.'", ",", ...	25.538462	0.002907
def get_cuda_devices(): """ Imports pycuda at runtime and reads GPU information. :return: A list of available cuda GPUs. """ devices = [] try: import pycuda.autoinit import pycuda.driver as cuda for device_id in range(cuda.Device.count()): vram = cuda.Devic...	[ "def", "get_cuda_devices", "(", ")", ":", "devices", "=", "[", "]", "try", ":", "import", "pycuda", ".", "autoinit", "import", "pycuda", ".", "driver", "as", "cuda", "for", "device_id", "in", "range", "(", "cuda", ".", "Device", ".", "count", "(", ")",...	26.85	0.003597
def make_posts(generator, metadata, url): """ Make posts on reddit if it's not a draft, on whatever subs are specified """ reddit = generator.get_reddit() title = lxml.html.fromstring(metadata['title']).text_content() if reddit is None: log.info("Reddit plugin not enabled") retu...	[ "def", "make_posts", "(", "generator", ",", "metadata", ",", "url", ")", ":", "reddit", "=", "generator", ".", "get_reddit", "(", ")", "title", "=", "lxml", ".", "html", ".", "fromstring", "(", "metadata", "[", "'title'", "]", ")", ".", "text_content", ...	40.296296	0.003591
def draw_material(material, face=GL_FRONT_AND_BACK): """Draw a single material""" if material.gl_floats is None: material.gl_floats = (GLfloat * len(material.vertices))(*material.vertices) material.triangle_count = len(material.vertices) / material.vertex_size vertex_format = VERTEX_FORMATS...	[ "def", "draw_material", "(", "material", ",", "face", "=", "GL_FRONT_AND_BACK", ")", ":", "if", "material", ".", "gl_floats", "is", "None", ":", "material", ".", "gl_floats", "=", "(", "GLfloat", "*", "len", "(", "material", ".", "vertices", ")", ")", "(...	37.051282	0.002023
def OpenEnumerateInstances(self, ClassName, namespace=None, LocalOnly=None, DeepInheritance=None, IncludeQualifiers=None, IncludeClassOrigin=None, PropertyList=None, FilterQueryLanguage=None, FilterQuery=None, ...	[ "def", "OpenEnumerateInstances", "(", "self", ",", "ClassName", ",", "namespace", "=", "None", ",", "LocalOnly", "=", "None", ",", "DeepInheritance", "=", "None", ",", "IncludeQualifiers", "=", "None", ",", "IncludeClassOrigin", "=", "None", ",", "PropertyList",...	46.235484	0.000546
def flags(name, use=None, accept_keywords=None, env=None, license=None, properties=None, unmask=False, mask=False): ''' Enforce the given flags on the given package or ``DEPEND`` atom. .. warning:: In most cases, the affected pa...	[ "def", "flags", "(", "name", ",", "use", "=", "None", ",", "accept_keywords", "=", "None", ",", "env", "=", "None", ",", "license", "=", "None", ",", "properties", "=", "None", ",", "unmask", "=", "False", ",", "mask", "=", "False", ")", ":", "ret"...	30.283019	0.001207
def printStatus(self): """Dumps different debug info about cluster to default logger""" status = self.getStatus() for k, v in iteritems(status): logging.info('%s: %s' % (str(k), str(v)))	[ "def", "printStatus", "(", "self", ")", ":", "status", "=", "self", ".", "getStatus", "(", ")", "for", "k", ",", "v", "in", "iteritems", "(", "status", ")", ":", "logging", ".", "info", "(", "'%s: %s'", "%", "(", "str", "(", "k", ")", ",", "str",...	43.6	0.009009
def _gen_hash(self, password, salt): """ Generate password hash. """ # generate hash h = hashlib.sha1() h.update(salt) h.update(password) return h.hexdigest()	[ "def", "_gen_hash", "(", "self", ",", "password", ",", "salt", ")", ":", "# generate hash", "h", "=", "hashlib", ".", "sha1", "(", ")", "h", ".", "update", "(", "salt", ")", "h", ".", "update", "(", "password", ")", "return", "h", ".", "hexdigest", ...	23	0.009302
def video_search(self, entitiy_type, query, **kwargs): """ Search the TV schedule database Where ``entitiy_type`` is a comma separated list of: ``movie`` Movie ``tvseries`` TV series ``episode`` Episode titles ``onetimeonly...	[ "def", "video_search", "(", "self", ",", "entitiy_type", ",", "query", ",", "", "", "kwargs", ")", ":", "return", "self", ".", "make_request", "(", "'video'", ",", "entitiy_type", ",", "query", ",", "kwargs", ")" ]	21.409091	0.004065
def get_items_batch(self, item_request_data, project=None): """GetItemsBatch. Post for retrieving a set of items given a list of paths or a long path. Allows for specifying the recursionLevel and version descriptors for each path. :param :class:`<TfvcItemRequestData> <azure.devops.v5_0.tfvc.mode...	[ "def", "get_items_batch", "(", "self", ",", "item_request_data", ",", "project", "=", "None", ")", ":", "route_values", "=", "{", "}", "if", "project", "is", "not", "None", ":", "route_values", "[", "'project'", "]", "=", "self", ".", "_serialize", ".", ...	60.705882	0.007634
def scanl(f: Callable[[T, U], T], x: T, xs: Iterable[U]) -> Iterator[T]: """ Make an iterator that returns accumulated results of a binary function applied to elements of an iterable. .. math:: scanl(f, x_0, [x_1, x_2, ...]) = [x_0, f(x_0, x_1), f(f(x_0, x_1), x_2), ...] Parameters -------...	[ "def", "scanl", "(", "f", ":", "Callable", "[", "[", "T", ",", "U", "]", ",", "T", "]", ",", "x", ":", "T", ",", "xs", ":", "Iterable", "[", "U", "]", ")", "->", "Iterator", "[", "T", "]", ":", "return", "accumulate", "(", "prepend", "(", "...	23.83871	0.003901
def addrs2managers(addrs): '''Map agent addresses to their assumed managers. .. seealso:: :func:`creamas.util.get_manager` ''' mgrs = {} for addr in addrs: mgr_addr = get_manager(addr) if mgr_addr not in mgrs: mgrs[mgr_addr] = [] mgrs[mgr_addr].append(ad...	[ "def", "addrs2managers", "(", "addrs", ")", ":", "mgrs", "=", "{", "}", "for", "addr", "in", "addrs", ":", "mgr_addr", "=", "get_manager", "(", "addr", ")", "if", "mgr_addr", "not", "in", "mgrs", ":", "mgrs", "[", "mgr_addr", "]", "=", "[", "]", "m...	23.285714	0.00295
def dynamic_import(import_string): """ Dynamically import a module or object. """ # Use rfind rather than rsplit for Python 2.3 compatibility. lastdot = import_string.rfind('.') if lastdot == -1: return __import__(import_string, {}, {}, []) module_name, attr = import_string[:lastdot]...	[ "def", "dynamic_import", "(", "import_string", ")", ":", "# Use rfind rather than rsplit for Python 2.3 compatibility.", "lastdot", "=", "import_string", ".", "rfind", "(", "'.'", ")", "if", "lastdot", "==", "-", "1", ":", "return", "__import__", "(", "import_string",...	39.909091	0.002227
def get_nas_credentials(self, identifier, **kwargs): """Returns a list of IDs of VLANs which match the given VLAN name. :param integer instance_id: the instance ID :returns: A dictionary containing a large amount of information about the specified instance. """ ...	[ "def", "get_nas_credentials", "(", "self", ",", "identifier", ",", "", "", "kwargs", ")", ":", "result", "=", "self", ".", "network_storage", ".", "getObject", "(", "id", "=", "identifier", ",", "", "", "kwargs", ")", "return", "result" ]	44.333333	0.004914
def get_docs_sources_from_ES(self): """Get document sources using MGET elasticsearch API""" docs = [doc for doc, _, _, get_from_ES in self.doc_to_update if get_from_ES] if docs: documents = self.docman.elastic.mget(body={"docs": docs}, realtime=True) return iter(documents...	[ "def", "get_docs_sources_from_ES", "(", "self", ")", ":", "docs", "=", "[", "doc", "for", "doc", ",", "_", ",", "_", ",", "get_from_ES", "in", "self", ".", "doc_to_update", "if", "get_from_ES", "]", "if", "docs", ":", "documents", "=", "self", ".", "do...	45.5	0.010782
def generate_nodeselector_dict(self, nodeselector_str): """ helper method for generating nodeselector dict :param nodeselector_str: :return: dict """ nodeselector = {} if nodeselector_str and nodeselector_str != 'none': constraints = [x.strip() for x i...	[ "def", "generate_nodeselector_dict", "(", "self", ",", "nodeselector_str", ")", ":", "nodeselector", "=", "{", "}", "if", "nodeselector_str", "and", "nodeselector_str", "!=", "'none'", ":", "constraints", "=", "[", "x", ".", "strip", "(", ")", "for", "x", "i...	42.769231	0.007042
def args_length(min_len, max_len, args): """ 检查参数长度 """ not_null(args) if not all(map(lambda v: min_len <= len(v) <= max_len, args)): raise ValueError("Argument length must be between {0} and {1}!".format(min_len, max_len))	[ "def", "args_length", "(", "min_len", ",", "max_len", ",", "", "args", ")", ":", "not_null", "(", "", "args", ")", "if", "not", "all", "(", "map", "(", "lambda", "v", ":", "min_len", "<=", "len", "(", "v", ")", "<=", "max_len", ",", "args", ")"...	32.25	0.007547
def _hash_token(application, token): """Creates a hashable object for given token then we could use it as a dictionary key. """ if isinstance(token, dict): hashed_token = tuple(sorted(token.items())) elif isinstance(token, tuple): hashed_token = token else: raise TypeErro...	[ "def", "_hash_token", "(", "application", ",", "token", ")", ":", "if", "isinstance", "(", "token", ",", "dict", ")", ":", "hashed_token", "=", "tuple", "(", "sorted", "(", "token", ".", "items", "(", ")", ")", ")", "elif", "isinstance", "(", "token", ...	35.5	0.002288
def mea_approximation(model, max_order, closure='scalar', closure_args, *closure_kwargs): r""" A wrapper around :class:`~means.approximation.mea.moment_expansion_approximation.MomentExpansionApproximation`. It performs moment expansion approximation (MEA) up to a given order of moment. See :class:...	[ "def", "mea_approximation", "(", "model", ",", "max_order", ",", "closure", "=", "'scalar'", ",", "", "closure_args", ",", "", "*", "closure_kwargs", ")", ":", "mea", "=", "MomentExpansionApproximation", "(", "model", ",", "max_order", ",", "closure", "=", ...	54.692308	0.009682
def compare(self, value, expectation, regex_expr=False): """ Compares two values with regular expression matching support. Arguments: value (mixed): value to compare. expectation (mixed): value to match. regex_expr (bool, optional): enables string based regex...	[ "def", "compare", "(", "self", ",", "value", ",", "expectation", ",", "regex_expr", "=", "False", ")", ":", "return", "compare", "(", "value", ",", "expectation", ",", "regex_expr", "=", "regex_expr", ")" ]	33.153846	0.004515
def _transstat(status, grouppath, dictpath, line): """Executes processing steps when reading a line""" if status == 0: raise MTLParseError( "Status should not be '%s' after reading line:\n%s" % (STATUSCODE[status], line)) elif status == 1: currentdict = dictpath[-1] ...	[ "def", "_transstat", "(", "status", ",", "grouppath", ",", "dictpath", ",", "line", ")", ":", "if", "status", "==", "0", ":", "raise", "MTLParseError", "(", "\"Status should not be '%s' after reading line:\\n%s\"", "%", "(", "STATUSCODE", "[", "status", "]", ","...	37.439024	0.000635
def _highest_degree_variable_chooser(problem, variables, domains): ''' Choose the variable that is involved on more constraints. ''' # the variable involved in more constraints return sorted(variables, key=lambda v: problem.var_degrees[v], reverse=True)[0]	[ "def", "_highest_degree_variable_chooser", "(", "problem", ",", "variables", ",", "domains", ")", ":", "# the variable involved in more constraints", "return", "sorted", "(", "variables", ",", "key", "=", "lambda", "v", ":", "problem", ".", "var_degrees", "[", "v", ...	45.166667	0.007246
def _combine_individual_stats(self, operator_count, cv_score, individual_stats): """Combine the stats with operator count and cv score and preprare to be written to _evaluated_individuals Parameters ---------- operator_count: int number of components in the pipeline ...	[ "def", "_combine_individual_stats", "(", "self", ",", "operator_count", ",", "cv_score", ",", "individual_stats", ")", ":", "stats", "=", "deepcopy", "(", "individual_stats", ")", "# Deepcopy, since the string reference to predecessor should be cloned", "stats", "[", "'oper...	50.357143	0.005567
def _parse_content(self, snv_entries): """ Parses SNV entries to SNVItems, objects representing the content for every entry, that can be used for further processing. """ if len(snv_entries) == 1: return for line in snv_entries[1:]: info_dic...	[ "def", "_parse_content", "(", "self", ",", "snv_entries", ")", ":", "if", "len", "(", "snv_entries", ")", "==", "1", ":", "return", "for", "line", "in", "snv_entries", "[", "1", ":", "]", ":", "info_dict", "=", "self", ".", "_map_info_to_col", "(", "li...	36.090909	0.004914
def _sort(self, short_list, sorts): """ TAKE SHORTLIST, RETURN IT SORTED :param short_list: :param sorts: LIST OF SORTS TO PERFORM :return: """ sort_values = self._index_columns(sorts) # RECURSIVE SORTING output = [] def _sort_more(short_...	[ "def", "_sort", "(", "self", ",", "short_list", ",", "sorts", ")", ":", "sort_values", "=", "self", ".", "_index_columns", "(", "sorts", ")", "# RECURSIVE SORTING", "output", "=", "[", "]", "def", "_sort_more", "(", "short_list", ",", "i", ",", "sorts", ...	28.032258	0.003337
def _compute_site_class_dummy_variables(cls, vs30): """ Extend :meth:`AtkinsonBoore2003SInter._compute_site_class_dummy_variables` and includes dummy variable for B/C site conditions (vs30 > 760.) """ Sbc = np.zeros_like(vs30) Sc = np.zeros_like(vs30) Sd =...	[ "def", "_compute_site_class_dummy_variables", "(", "cls", ",", "vs30", ")", ":", "Sbc", "=", "np", ".", "zeros_like", "(", "vs30", ")", "Sc", "=", "np", ".", "zeros_like", "(", "vs30", ")", "Sd", "=", "np", ".", "zeros_like", "(", "vs30", ")", "Se", ...	31.588235	0.003617
def addfield(self, pkt, s, val): """Add an internal value to a string""" tmp_len = self.length_of(pkt) if tmp_len == 0: return s internal = self.i2m(pkt, val)[-tmp_len:] return s + struct.pack("!%ds" % tmp_len, internal)	[ "def", "addfield", "(", "self", ",", "pkt", ",", "s", ",", "val", ")", ":", "tmp_len", "=", "self", ".", "length_of", "(", "pkt", ")", "if", "tmp_len", "==", "0", ":", "return", "s", "internal", "=", "self", ".", "i2m", "(", "pkt", ",", "val", ...	38.142857	0.007326
def execute_download_request(request): """ Executes download request. :param request: DownloadRequest to be executed :type request: DownloadRequest :return: downloaded data or None :rtype: numpy array, other possible data type or None :raises: DownloadFailedException """ if request.save...	[ "def", "execute_download_request", "(", "request", ")", ":", "if", "request", ".", "save_response", "and", "request", ".", "data_folder", "is", "None", ":", "raise", "ValueError", "(", "'Data folder is not specified. '", "'Please give a data folder name in the initializatio...	46.622642	0.003171
def gene_forms(self): """ :return: List of strings for all available gene forms :rtype: list[str] """ q = self.session.query(distinct(models.ChemGeneIxnGeneForm.gene_form)) return [x[0] for x in q.all()]	[ "def", "gene_forms", "(", "self", ")", ":", "q", "=", "self", ".", "session", ".", "query", "(", "distinct", "(", "models", ".", "ChemGeneIxnGeneForm", ".", "gene_form", ")", ")", "return", "[", "x", "[", "0", "]", "for", "x", "in", "q", ".", "all"...	35	0.007968
def close(self): """Close the listening sockets and all accepted connections.""" for handle in self._handles: if not handle.closed: handle.close() del self._handles[:] for transport, _ in self.connections: transport.close() self._all_closed...	[ "def", "close", "(", "self", ")", ":", "for", "handle", "in", "self", ".", "_handles", ":", "if", "not", "handle", ".", "closed", ":", "handle", ".", "close", "(", ")", "del", "self", ".", "_handles", "[", ":", "]", "for", "transport", ",", "_", ...	35.444444	0.006116
def gen_experiment_id(n=10): """Generate a random string with n characters. Parameters ---------- n : int The length of the string to be generated. Returns ------- :obj:`str` A string with only alphabetic characters. """ chrs = 'abcdefghijklmnopqrstuvwxyz' inds...	[ "def", "gen_experiment_id", "(", "n", "=", "10", ")", ":", "chrs", "=", "'abcdefghijklmnopqrstuvwxyz'", "inds", "=", "np", ".", "random", ".", "randint", "(", "0", ",", "len", "(", "chrs", ")", ",", "size", "=", "n", ")", "return", "''", ".", "join",...	24.375	0.007407
def compute_allele_frequencies(self, using=None): "Computes the allele frequencies across all samples in this cohort." if using is None: using = router.db_for_write(self.__class__) cursor = connections[using].cursor() with transition(self, 'Recomputed Allele Frequencies'): ...	[ "def", "compute_allele_frequencies", "(", "self", ",", "using", "=", "None", ")", ":", "if", "using", "is", "None", ":", "using", "=", "router", ".", "db_for_write", "(", "self", ".", "__class__", ")", "cursor", "=", "connections", "[", "using", "]", "."...	46.725	0.001048
def find_files(args): ''' Return list of spec files. `args` may be filenames which are passed right through, or directories in which case they are searched recursively for *._spec.py ''' files_or_dirs = args or ['.'] filenames = [] for f in files_or_dirs: if path.isdir(f): ...	[ "def", "find_files", "(", "args", ")", ":", "files_or_dirs", "=", "args", "or", "[", "'.'", "]", "filenames", "=", "[", "]", "for", "f", "in", "files_or_dirs", ":", "if", "path", ".", "isdir", "(", "f", ")", ":", "filenames", ".", "extend", "(", "g...	35.0625	0.003472
def startswith(self, prefix, start=None, end=None): """Return whether the current bitstring starts with prefix. prefix -- The bitstring to search for. start -- The bit position to start from. Defaults to 0. end -- The bit position to end at. Defaults to self.len. """ pr...	[ "def", "startswith", "(", "self", ",", "prefix", ",", "start", "=", "None", ",", "end", "=", "None", ")", ":", "prefix", "=", "Bits", "(", "prefix", ")", "start", ",", "end", "=", "self", ".", "_validate_slice", "(", "start", ",", "end", ")", "if",...	37.428571	0.003724
def get(object_ids): """Get a single or a collection of remote objects from the object store. This method is identical to `ray.get` except it adds support for tuples, ndarrays and dictionaries. Args: object_ids: Object ID of the object to get, a list, tuple, ndarray of object IDs t...	[ "def", "get", "(", "object_ids", ")", ":", "if", "isinstance", "(", "object_ids", ",", "(", "tuple", ",", "np", ".", "ndarray", ")", ")", ":", "return", "ray", ".", "get", "(", "list", "(", "object_ids", ")", ")", "elif", "isinstance", "(", "object_i...	33.4	0.00097
def flatten(nested_list: list) -> list: """Flattens a list, ignore all the lambdas.""" return list(sorted(filter(lambda y: y is not None, list(map(lambda x: (nested_list.extend(x) # noqa: T484 if isinstance(x, list) else x), ...	[ "def", "flatten", "(", "nested_list", ":", "list", ")", "->", "list", ":", "return", "list", "(", "sorted", "(", "filter", "(", "lambda", "y", ":", "y", "is", "not", "None", ",", "list", "(", "map", "(", "lambda", "x", ":", "(", "nested_list", ".",...	60.666667	0.00542
def form(self, usr=None, **kwargs): """ Returns an HTTPForm that matches the given criteria Searches for an HTML form in the page's content matching the criteria specified in kwargs. If a form is found, returns an HTTPForm instance that represents the form. P...	[ "def", "form", "(", "self", ",", "usr", "=", "None", ",", "", "", "kwargs", ")", ":", "if", "self", ".", "usr", ":", "usr", "=", "self", ".", "usr", "if", "self", ".", "find", "(", "\"form\"", ",", "kwargs", ")", ":", "return", "HTTPForm", "(...	42.235294	0.010899
def _parse_json(self, resources, exactly_one=True): """ Parse type, words, latitude, and longitude and language from a JSON response. """ code = resources['status'].get('code') if code: # https://docs.what3words.com/api/v2/#errors exc_msg = "Erro...	[ "def", "_parse_json", "(", "self", ",", "resources", ",", "exactly_one", "=", "True", ")", ":", "code", "=", "resources", "[", "'status'", "]", ".", "get", "(", "'code'", ")", "if", "code", ":", "# https://docs.what3words.com/api/v2/#errors", "exc_msg", "=", ...	32.342105	0.00237
def fetchmany(self, size=None): """Fetch many""" self._check_executed() if size is None: size = self.arraysize rows = [] for i in range_type(size): row = self.read_next() if row is None: break rows.append(row) ...	[ "def", "fetchmany", "(", "self", ",", "size", "=", "None", ")", ":", "self", ".", "_check_executed", "(", ")", "if", "size", "is", "None", ":", "size", "=", "self", ".", "arraysize", "rows", "=", "[", "]", "for", "i", "in", "range_type", "(", "size...	25.214286	0.005464
def notify_start(self, data): """Call this to trigger startup actions. This logs the process startup and sets the state to 'running'. It is a pass-through so it can be used as a callback. """ self.log.debug('Process %r started: %r', self.args[0], data) self.start_data ...	[ "def", "notify_start", "(", "self", ",", "data", ")", ":", "self", ".", "log", ".", "debug", "(", "'Process %r started: %r'", ",", "self", ".", "args", "[", "0", "]", ",", "data", ")", "self", ".", "start_data", "=", "data", "self", ".", "state", "="...	33.363636	0.005305
def _images(self, sys_output): ''' a helper method for parsing docker image output ''' import re gap_pattern = re.compile('\t\|\s{2,}') image_list = [] output_lines = sys_output.split('\n') column_headers = gap_pattern.split(output_lines[0]) for i in...	[ "def", "_images", "(", "self", ",", "sys_output", ")", ":", "import", "re", "gap_pattern", "=", "re", ".", "compile", "(", "'\\t\|\\s{2,}'", ")", "image_list", "=", "[", "]", "output_lines", "=", "sys_output", ".", "split", "(", "'\\n'", ")", "column_header...	37.277778	0.007267
def extract_data(self): """Extracts data from archive. Returns: PackageData object containing the extracted data. """ data = PackageData( local_file=self.local_file, name=self.name, pkg_name=self.rpm_name or self.name_convertor.rpm_name( ...	[ "def", "extract_data", "(", "self", ")", ":", "data", "=", "PackageData", "(", "local_file", "=", "self", ".", "local_file", ",", "name", "=", "self", ".", "name", ",", "pkg_name", "=", "self", ".", "rpm_name", "or", "self", ".", "name_convertor", ".", ...	36.217391	0.002339
def _parse_sot_segment(self, fptr): """Parse the SOT segment. Parameters ---------- fptr : file Open file object. Returns ------- SOTSegment The current SOT segment. """ offset = fptr.tell() - 2 read_buffer = fptr...	[ "def", "_parse_sot_segment", "(", "self", ",", "fptr", ")", ":", "offset", "=", "fptr", ".", "tell", "(", ")", "-", "2", "read_buffer", "=", "fptr", ".", "read", "(", "10", ")", "data", "=", "struct", ".", "unpack", "(", "'>HHIBB'", ",", "read_buffer...	26	0.001951
def learn(self, msg, learnas): """Learn message as spam/ham or forget""" if not isinstance(learnas, types.StringTypes): raise SpamCError('The learnas option is invalid') if learnas.lower() == 'forget': resp = self.tell(msg, 'forget') else: resp = self....	[ "def", "learn", "(", "self", ",", "msg", ",", "learnas", ")", ":", "if", "not", "isinstance", "(", "learnas", ",", "types", ".", "StringTypes", ")", ":", "raise", "SpamCError", "(", "'The learnas option is invalid'", ")", "if", "learnas", ".", "lower", "("...	39.888889	0.00545
def _ParseCommentRecord(self, structure): """Parse a comment and store appropriate attributes. Args: structure (pyparsing.ParseResults): parsed log line. """ comment = structure[1] if comment.startswith('Version'): _, _, self._version = comment.partition(':') elif comment.startswith...	[ "def", "_ParseCommentRecord", "(", "self", ",", "structure", ")", ":", "comment", "=", "structure", "[", "1", "]", "if", "comment", ".", "startswith", "(", "'Version'", ")", ":", "_", ",", "_", ",", "self", ".", "_version", "=", "comment", ".", "partit...	35.866667	0.009058
def split_ext(path, basename=True): """Wrap them to make life easier.""" if basename: path = os.path.basename(path) return os.path.splitext(path)	[ "def", "split_ext", "(", "path", ",", "basename", "=", "True", ")", ":", "if", "basename", ":", "path", "=", "os", ".", "path", ".", "basename", "(", "path", ")", "return", "os", ".", "path", ".", "splitext", "(", "path", ")" ]	32.2	0.006061
def parse_args(self, args=None, namespace=None, defaults=None): """Parse args, returns a tuple of a parser and ParsedArgs object Args: args -- sequence of strings representing the arguments to parse namespace -- object to use for holding arguments defaults -- la...	[ "def", "parse_args", "(", "self", ",", "args", "=", "None", ",", "namespace", "=", "None", ",", "defaults", "=", "None", ")", ":", "epilog", "=", "self", ".", "subparsers_summary", "(", ")", "epilog", "+=", "self", ".", "epilog", "return", "self", "(",...	54.428571	0.007742
def cache_last_modified(request, argz, *kwz): '''Last modification date for a cached page. Intended for usage in conditional views (@condition decorator).''' response, site, cachekey = kwz.get('_view_data') or initview(request) if not response: return None return response[1]	[ "def", "cache_last_modified", "(", "request", ",", "", "argz", ",", "", "*", "kwz", ")", ":", "response", ",", "site", ",", "cachekey", "=", "kwz", ".", "get", "(", "'_view_data'", ")", "or", "initview", "(", "request", ")", "if", "not", "response", ...	46.333333	0.024735
def build(self): """ Build vocabulary. """ token_freq = self._token_count.most_common(self._max_size) idx = len(self.vocab) for token, _ in token_freq: self._token2id[token] = idx self._id2token.append(token) idx += 1 if self._u...	[ "def", "build", "(", "self", ")", ":", "token_freq", "=", "self", ".", "_token_count", ".", "most_common", "(", "self", ".", "_max_size", ")", "idx", "=", "len", "(", "self", ".", "vocab", ")", "for", "token", ",", "_", "in", "token_freq", ":", "self...	29.5	0.004695
def agent_color(self, val): """ gets a colour for agent 0 - 9 """ if val == '0': colour = 'blue' elif val == '1': colour = 'navy' elif val == '2': colour = 'firebrick' elif val == '3': colour = 'blue' elif v...	[ "def", "agent_color", "(", "self", ",", "val", ")", ":", "if", "val", "==", "'0'", ":", "colour", "=", "'blue'", "elif", "val", "==", "'1'", ":", "colour", "=", "'navy'", "elif", "val", "==", "'2'", ":", "colour", "=", "'firebrick'", "elif", "val", ...	22.821429	0.009009
def get_folder(self, *, folder_id=None, folder_name=None): """ Get a folder by it's id or name :param str folder_id: the folder_id to be retrieved. Can be any folder Id (child or not) :param str folder_name: the folder name to be retrieved. Must be a child of this folder. ...	[ "def", "get_folder", "(", "self", ",", "*", ",", "folder_id", "=", "None", ",", "folder_name", "=", "None", ")", ":", "if", "folder_id", "and", "folder_name", ":", "raise", "RuntimeError", "(", "'Provide only one of the options'", ")", "if", "not", "folder_id"...	40.88	0.001433
def authenticated_userid(request): """Helper function that can be used in ``db_key`` to support `self` as a collection key. """ user = getattr(request, 'user', None) key = user.pk_field() return getattr(user, key)	[ "def", "authenticated_userid", "(", "request", ")", ":", "user", "=", "getattr", "(", "request", ",", "'user'", ",", "None", ")", "key", "=", "user", ".", "pk_field", "(", ")", "return", "getattr", "(", "user", ",", "key", ")" ]	33	0.004219
def path_exists(value, allow_empty = False, **kwargs): """Validate that ``value`` is a path-like object that exists on the local filesystem. :param value: The value to validate. :param allow_empty: If ``True``, returns :obj:`None <python:None>` if ``value`` is emp...	[ "def", "path_exists", "(", "value", ",", "allow_empty", "=", "False", ",", "", "", "kwargs", ")", ":", "if", "not", "value", "and", "not", "allow_empty", ":", "raise", "errors", ".", "EmptyValueError", "(", "'value (%s) was empty'", "%", "value", ")", "e...	35.441176	0.004847
def random_patt_uniform(nrows, ncols, patt_type=scalar): """Returns a ScalarPatternUniform object or a VectorPatternUniform object where each of the elements is set to a normal random variable with zero mean and unit standard deviation. nrows is the number of rows in the pattern, which correspon...	[ "def", "random_patt_uniform", "(", "nrows", ",", "ncols", ",", "patt_type", "=", "scalar", ")", ":", "if", "np", ".", "mod", "(", "ncols", ",", "2", ")", "==", "1", ":", "raise", "ValueError", "(", "err_msg", "[", "'ncols_even'", "]", ")", "if", "(",...	41	0.005955
def _fastfood_build(args): """Run on `fastfood build`.""" written_files, cookbook = food.build_cookbook( args.config_file, args.template_pack, args.cookbooks, args.force) if len(written_files) > 0: print("%s: %s files written" % (cookbook, len...	[ "def", "_fastfood_build", "(", "args", ")", ":", "written_files", ",", "cookbook", "=", "food", ".", "build_cookbook", "(", "args", ".", "config_file", ",", "args", ".", "template_pack", ",", "args", ".", "cookbooks", ",", "args", ".", "force", ")", "if", ...	31.769231	0.002353
def lcs_logs(): """ Pull Retrosheet LCS Game Logs """ file_name = 'GLLC.TXT' z = get_zip_file(lcs_url) data = pd.read_csv(z.open(file_name), header=None, sep=',', quotechar='"') data.columns = gamelog_columns return data	[ "def", "lcs_logs", "(", ")", ":", "file_name", "=", "'GLLC.TXT'", "z", "=", "get_zip_file", "(", "lcs_url", ")", "data", "=", "pd", ".", "read_csv", "(", "z", ".", "open", "(", "file_name", ")", ",", "header", "=", "None", ",", "sep", "=", "','", "...	27.111111	0.003968
def following_qs(self, user, models, *kwargs): """ Returns a queryset of actors that the given user is following (eg who im following). Items in the list can be of any model unless a list of restricted models are passed. Eg following(user, User) will only return users following the giv...	[ "def", "following_qs", "(", "self", ",", "user", ",", "", "models", ",", "", "*", "kwargs", ")", ":", "qs", "=", "self", ".", "filter", "(", "user", "=", "user", ")", "ctype_filters", "=", "Q", "(", ")", "for", "model", "in", "models", ":", "ch...	39.888889	0.008163
def _make_regs_symbolic(input_state, reg_list, project): """ converts an input state into a state with symbolic registers :return: the symbolic state """ state = input_state.copy() # overwrite all registers for reg in reg_list: state.registers.store(re...	[ "def", "_make_regs_symbolic", "(", "input_state", ",", "reg_list", ",", "project", ")", ":", "state", "=", "input_state", ".", "copy", "(", ")", "# overwrite all registers", "for", "reg", "in", "reg_list", ":", "state", ".", "registers", ".", "store", "(", "...	38.428571	0.005445
def search_in_rubric(self, **kwargs): """Firms search in rubric http://api.2gis.ru/doc/firms/searches/searchinrubric/ """ point = kwargs.pop('point', False) if point: kwargs['point'] = '%s,%s' % point bound = kwargs.pop('bound', False) if bound: ...	[ "def", "search_in_rubric", "(", "self", ",", "", "", "kwargs", ")", ":", "point", "=", "kwargs", ".", "pop", "(", "'point'", ",", "False", ")", "if", "point", ":", "kwargs", "[", "'point'", "]", "=", "'%s,%s'", "%", "point", "bound", "=", "kwargs",...	28.285714	0.003257
def set_environment(self, environment): """Set the environment for all nodes.""" todo = deque([self]) while todo: node = todo.popleft() node.environment = environment todo.extend(node.iter_child_nodes()) return self	[ "def", "set_environment", "(", "self", ",", "environment", ")", ":", "todo", "=", "deque", "(", "[", "self", "]", ")", "while", "todo", ":", "node", "=", "todo", ".", "popleft", "(", ")", "node", ".", "environment", "=", "environment", "todo", ".", "...	34.5	0.007067
def _key_index_iter(self) -> Iterator[Tuple[str, Any]]: """ Allows for iteration over the ``KeyIndex`` values. This function is intended to be assigned to a newly created KeyIndex class. It enables iteration over the ``KeyIndex`` names and values. We don't use a mixin to avoid issues with YAML. Note: ...	[ "def", "_key_index_iter", "(", "self", ")", "->", "Iterator", "[", "Tuple", "[", "str", ",", "Any", "]", "]", ":", "for", "k", ",", "v", "in", "vars", "(", "self", ")", ".", "items", "(", ")", ":", "yield", "k", ",", "v" ]	45.166667	0.007233
def visit_FunctionCall(self, node): """Visitor for `FunctionCall` AST node.""" call = self.memory[node.identifier.name]._node args = [self.visit(parameter) for parameter in node.parameters] if isinstance(call, AST): current_scope = self.memory.stack.current.current ...	[ "def", "visit_FunctionCall", "(", "self", ",", "node", ")", ":", "call", "=", "self", ".", "memory", "[", "node", ".", "identifier", ".", "name", "]", ".", "_node", "args", "=", "[", "self", ".", "visit", "(", "parameter", ")", "for", "parameter", "i...	33.961538	0.002203
def get_gene_pathways(self, gene_name=None, gene_symbol=None, gene_id=None, pathway_id=None, pathway_name=None, limit=None, as_df=False): """Get gene pathway link :param bool as_df: if set to True result returns as `pandas.DataFrame` :param str gene_name: gene ...	[ "def", "get_gene_pathways", "(", "self", ",", "gene_name", "=", "None", ",", "gene_symbol", "=", "None", ",", "gene_id", "=", "None", ",", "pathway_id", "=", "None", ",", "pathway_name", "=", "None", ",", "limit", "=", "None", ",", "as_df", "=", "False",...	42.884615	0.009649
def remove_redundant_accidentals(note): """Remove redundant sharps and flats from the given note. Examples: >>> remove_redundant_accidentals('C##b') 'C#' >>> remove_redundant_accidentals('Eb##b') 'E' """ val = 0 for token in note[1:]: if token == 'b': val -= 1 ...	[ "def", "remove_redundant_accidentals", "(", "note", ")", ":", "val", "=", "0", "for", "token", "in", "note", "[", "1", ":", "]", ":", "if", "token", "==", "'b'", ":", "val", "-=", "1", "elif", "token", "==", "'#'", ":", "val", "+=", "1", "result", ...	22.652174	0.001842
def _ipc_send(self, sock, message_type, payload): ''' Send and receive a message from the ipc. NOTE: this is not thread safe ''' sock.sendall(self._pack(message_type, payload)) data, msg_type = self._ipc_recv(sock) return data	[ "def", "_ipc_send", "(", "self", ",", "sock", ",", "message_type", ",", "payload", ")", ":", "sock", ".", "sendall", "(", "self", ".", "_pack", "(", "message_type", ",", "payload", ")", ")", "data", ",", "msg_type", "=", "self", ".", "_ipc_recv", "(", ...	34.375	0.007092
def restore(name): """Restores the database from a snapshot""" app = get_app() if not name: snapshot = app.get_latest_snapshot() if not snapshot: click.echo( "Couldn't find any snapshots for project %s" % load_config()['project_name'] ...	[ "def", "restore", "(", "name", ")", ":", "app", "=", "get_app", "(", ")", "if", "not", "name", ":", "snapshot", "=", "app", ".", "get_latest_snapshot", "(", ")", "if", "not", "snapshot", ":", "click", ".", "echo", "(", "\"Couldn't find any snapshots for pr...	31.121951	0.00076
def _update_project(config, task_presenter, results, long_description, tutorial): """Update a project.""" try: # Get project project = find_project_by_short_name(config.project['short_name'], config.pbclient, ...	[ "def", "_update_project", "(", "config", ",", "task_presenter", ",", "results", ",", "long_description", ",", "tutorial", ")", ":", "try", ":", "# Get project", "project", "=", "find_project_by_short_name", "(", "config", ".", "project", "[", "'short_name'", "]", ...	44	0.002471
def _p_iteration(self, P, Bp_solver, Vm, Va, pvpq): """ Performs a P iteration, updates Va. """ dVa = -Bp_solver.solve(P) # Update voltage. Va[pvpq] = Va[pvpq] + dVa V = Vm * exp(1j * Va) return V, Vm, Va	[ "def", "_p_iteration", "(", "self", ",", "P", ",", "Bp_solver", ",", "Vm", ",", "Va", ",", "pvpq", ")", ":", "dVa", "=", "-", "Bp_solver", ".", "solve", "(", "P", ")", "# Update voltage.", "Va", "[", "pvpq", "]", "=", "Va", "[", "pvpq", "]", "+",...	25.3	0.007634
def get_checked(self): """Return the list of checked items that do not have any child.""" checked = [] def get_checked_children(item): if not self.tag_has("unchecked", item): ch = self.get_children(item) if not ch and self.tag_has("checked", item): ...	[ "def", "get_checked", "(", "self", ")", ":", "checked", "=", "[", "]", "def", "get_checked_children", "(", "item", ")", ":", "if", "not", "self", ".", "tag_has", "(", "\"unchecked\"", ",", "item", ")", ":", "ch", "=", "self", ".", "get_children", "(", ...	33	0.003466

def is_dirty(self): """ .. todo:: docstring for is_dirty """ # Imports from ..error import RepoError as RErr # Get the return value from the dataset, complaining if repo not # bound. Using 'require_dataset' since any repo w/o a defined # 'dirty' value is just ...

[ "def", "is_dirty", "(", "self", ")", ":", "# Imports", "from", ".", ".", "error", "import", "RepoError", "as", "RErr", "# Get the return value from the dataset, complaining if repo not", "# bound. Using 'require_dataset' since any repo w/o a defined", "# 'dirty' value is just goi...

36.571429

0.007614

def area_pal(range=(1, 6)): """ Point area palette (continuous). Parameters ---------- range : tuple Numeric vector of length two, giving range of possible sizes. Should be greater than 0. Returns ------- out : function Palette function that takes a sequence of ...

[ "def", "area_pal", "(", "range", "=", "(", "1", ",", "6", ")", ")", ":", "def", "area_palette", "(", "x", ")", ":", "return", "rescale", "(", "np", ".", "sqrt", "(", "x", ")", ",", "to", "=", "range", ",", "_from", "=", "(", "0", ",", "1", ...

24.9

0.001289

def show_print_dialog(self): """Open the print dialog""" if not self.impact_function: # Now try to read the keywords and show them in the dock try: active_layer = self.iface.activeLayer() keywords = self.keyword_io.read_keywords(active_layer) ...

[ "def", "show_print_dialog", "(", "self", ")", ":", "if", "not", "self", ".", "impact_function", ":", "# Now try to read the keywords and show them in the dock", "try", ":", "active_layer", "=", "self", ".", "iface", ".", "activeLayer", "(", ")", "keywords", "=", "...

43.296296

0.000836

def to_file(self, path, precision='%.2g'): """ Create a CSV report of the trackables :param path: path to file :param precision: numeric string formatter """ table_info = self.get_table_info() def dump_rows(rows): if len(rows) > 1: for...

[ "def", "to_file", "(", "self", ",", "path", ",", "precision", "=", "'%.2g'", ")", ":", "table_info", "=", "self", ".", "get_table_info", "(", ")", "def", "dump_rows", "(", "rows", ")", ":", "if", "len", "(", "rows", ")", ">", "1", ":", "for", "row"...

47.533333

0.005039

def _write_plist(self, root): """Write plist file based on our generated tree.""" # prettify the XML indent_xml(root) tree = ElementTree.ElementTree(root) with open(self.preferences_file, "w") as prefs_file: prefs_file.write( "<?xml version=\"1.0\" en...

[ "def", "_write_plist", "(", "self", ",", "root", ")", ":", "# prettify the XML", "indent_xml", "(", "root", ")", "tree", "=", "ElementTree", ".", "ElementTree", "(", "root", ")", "with", "open", "(", "self", ".", "preferences_file", ",", "\"w\"", ")", "as"...

45.428571

0.003082

def run(self): """ Runs the given OPF task against the given Model instance """ self._logger.debug("Starting Dummy Model: modelID=%s;" % (self._modelID)) # ========================================================================= # Initialize periodic activities (e.g., for model result updates) # ...

[ "def", "run", "(", "self", ")", ":", "self", ".", "_logger", ".", "debug", "(", "\"Starting Dummy Model: modelID=%s;\"", "%", "(", "self", ".", "_modelID", ")", ")", "# =========================================================================", "# Initialize periodic activi...

37

0.012694

def align(args): """ %prog align database.fasta read1.fq [read2.fq] Wrapper for three modes of BWA - mem (default), aln, bwasw (long reads). """ valid_modes = ("bwasw", "aln", "mem") p = OptionParser(align.__doc__) p.add_option("--mode", default="mem", choices=valid_modes, help="BWA mode") ...

[ "def", "align", "(", "args", ")", ":", "valid_modes", "=", "(", "\"bwasw\"", ",", "\"aln\"", ",", "\"mem\"", ")", "p", "=", "OptionParser", "(", "align", ".", "__doc__", ")", "p", ".", "add_option", "(", "\"--mode\"", ",", "default", "=", "\"mem\"", ",...

24.176471

0.000779

def tf_smooth_eig_vec(self): """Function that returns smoothed version of min eigen vector.""" _, matrix_m = self.dual_object.get_full_psd_matrix() # Easier to think in terms of max so negating the matrix [eig_vals, eig_vectors] = tf.self_adjoint_eig(-matrix_m) exp_eig_vals = tf.exp(tf.divide(eig_va...

[ "def", "tf_smooth_eig_vec", "(", "self", ")", ":", "_", ",", "matrix_m", "=", "self", ".", "dual_object", ".", "get_full_psd_matrix", "(", ")", "# Easier to think in terms of max so negating the matrix", "[", "eig_vals", ",", "eig_vectors", "]", "=", "tf", ".", "s...

51.2

0.001279

def is_open_chunk(self, chk): """Check the chunk is free or not""" cs = self.get_chunk_status(chk) if cs & 0x4 != 0: return True return False

[ "def", "is_open_chunk", "(", "self", ",", "chk", ")", ":", "cs", "=", "self", ".", "get_chunk_status", "(", "chk", ")", "if", "cs", "&", "0x4", "!=", "0", ":", "return", "True", "return", "False" ]

30.833333

0.010526

def run(self): """Main entrypoint method. Returns ------- new_nodes : `list` Nodes to add to the doctree. """ self._env = self.state.document.settings.env nodes = [] if 'toctree' in self.options: # Insert a hidden toctree ...

[ "def", "run", "(", "self", ")", ":", "self", ".", "_env", "=", "self", ".", "state", ".", "document", ".", "settings", ".", "env", "nodes", "=", "[", "]", "if", "'toctree'", "in", "self", ".", "options", ":", "# Insert a hidden toctree", "toctree_node", ...

26.416667

0.003044

def is_link(url, processed, files): """ Determine whether or not a link should be crawled A url should not be crawled if it - Is a file - Has already been crawled Args: url: str Url to be processed processed: list[str] List of urls that have already been crawled Ret...

[ "def", "is_link", "(", "url", ",", "processed", ",", "files", ")", ":", "if", "url", "not", "in", "processed", ":", "is_file", "=", "url", ".", "endswith", "(", "BAD_TYPES", ")", "if", "is_file", ":", "files", ".", "add", "(", "url", ")", "return", ...

25.380952

0.001808

def prepare(self, inputstring, strip=False, nl_at_eof_check=False, **kwargs): """Prepare a string for processing.""" if self.strict and nl_at_eof_check and inputstring and not inputstring.endswith("\n"): end_index = len(inputstring) - 1 if inputstring else 0 raise self.make_err(C...

[ "def", "prepare", "(", "self", ",", "inputstring", ",", "strip", "=", "False", ",", "nl_at_eof_check", "=", "False", ",", "*", "*", "kwargs", ")", ":", "if", "self", ".", "strict", "and", "nl_at_eof_check", "and", "inputstring", "and", "not", "inputstring"...

54.25

0.006042

def workflow(ctx, client): """List or manage workflows with subcommands.""" if ctx.invoked_subcommand is None: from renku.models.refs import LinkReference names = defaultdict(list) for ref in LinkReference.iter_items(client, common_path='workflows'): names[ref.reference.name...

[ "def", "workflow", "(", "ctx", ",", "client", ")", ":", "if", "ctx", ".", "invoked_subcommand", "is", "None", ":", "from", "renku", ".", "models", ".", "refs", "import", "LinkReference", "names", "=", "defaultdict", "(", "list", ")", "for", "ref", "in", ...

36.105263

0.00142

def get_file(self, sharename, fileid): """ Get a specific file. Does not require authentication. Input: * A sharename * A fileid - must be an integer Output: * A :py:mod:`pygett.files.GettFile` object Example:: file = client.get...

[ "def", "get_file", "(", "self", ",", "sharename", ",", "fileid", ")", ":", "if", "not", "isinstance", "(", "fileid", ",", "int", ")", ":", "raise", "TypeError", "(", "\"'fileid' must be an integer\"", ")", "response", "=", "GettRequest", "(", ")", ".", "ge...

26.304348

0.00319

def temp_connect(self, hardware: hc.API): """ Connect temporarily to the specified hardware controller. This should be used as a context manager: .. code-block :: python with ctx.temp_connect(hw): # do some tasks ctx.home() # after the w...

[ "def", "temp_connect", "(", "self", ",", "hardware", ":", "hc", ".", "API", ")", ":", "old_hw", "=", "self", ".", "_hw_manager", ".", "hardware", "try", ":", "self", ".", "_hw_manager", ".", "set_hw", "(", "hardware", ")", "yield", "self", "finally", "...

32.47619

0.002849

def cancel(self, msg='', exc_type=CancelledError): """Cancels all inprogress transfers This cancels the inprogress transfers by calling cancel() on all tracked transfer coordinators. :param msg: The message to pass on to each transfer coordinator that gets cancelled. ...

[ "def", "cancel", "(", "self", ",", "msg", "=", "''", ",", "exc_type", "=", "CancelledError", ")", ":", "for", "transfer_coordinator", "in", "self", ".", "tracked_transfer_coordinators", ":", "transfer_coordinator", ".", "cancel", "(", "msg", ",", "exc_type", "...

39.692308

0.003788

def format_authors(self, format='html5', deparagraph=True, mathjax=False, smart=True, extra_args=None): """Get the document authors in the specified markup format. Parameters ---------- format : `str`, optional Output format (such as ``'html5'`` or ``'...

[ "def", "format_authors", "(", "self", ",", "format", "=", "'html5'", ",", "deparagraph", "=", "True", ",", "mathjax", "=", "False", ",", "smart", "=", "True", ",", "extra_args", "=", "None", ")", ":", "formatted_authors", "=", "[", "]", "for", "latex_aut...

40.228571

0.00208

async def xclaim(self, name: str, group: str, consumer: str, min_idle_time: int, *stream_ids): """ [NOTICE] Not officially released yet Gets ownership of one or multiple messages in the Pending Entries List of a given stream consumer group. :param name: name of the stream :para...

[ "async", "def", "xclaim", "(", "self", ",", "name", ":", "str", ",", "group", ":", "str", ",", "consumer", ":", "str", ",", "min_idle_time", ":", "int", ",", "*", "stream_ids", ")", ":", "return", "await", "self", ".", "execute_command", "(", "'XCLAIM'...

51.235294

0.007892

def create(cli, command, docker_id): """Creates waybill shims from a given command name and docker image""" content = waybill_template.format(command=command, docker_id=docker_id) waybill_dir = cli.get_waybill_dir() waybill_filename = os.path.joi...

[ "def", "create", "(", "cli", ",", "command", ",", "docker_id", ")", ":", "content", "=", "waybill_template", ".", "format", "(", "command", "=", "command", ",", "docker_id", "=", "docker_id", ")", "waybill_dir", "=", "cli", ".", "get_waybill_dir", "(", ")"...

56.888889

0.003846

def partition(thelist, n): """ Break a list into ``n`` pieces. The last list may be larger than the rest if the list doesn't break cleanly. That is:: >>> l = range(10) >>> partition(l, 2) [[0, 1, 2, 3, 4], [5, 6, 7, 8, 9]] >>> partition(l, 3) [[0, 1, 2], [3, 4, ...

[ "def", "partition", "(", "thelist", ",", "n", ")", ":", "try", ":", "n", "=", "int", "(", "n", ")", "thelist", "=", "list", "(", "thelist", ")", "except", "(", "ValueError", ",", "TypeError", ")", ":", "return", "[", "thelist", "]", "p", "=", "le...

25.962963

0.011004

def get_collections(self): """ Get names of collections from request matchdict. :return: Names of collections :rtype: list of str """ collections = self.request.matchdict['collections'].split('/')[0] collections = [coll.strip() for coll in collections.split(',')] ...

[ "def", "get_collections", "(", "self", ")", ":", "collections", "=", "self", ".", "request", ".", "matchdict", "[", "'collections'", "]", ".", "split", "(", "'/'", ")", "[", "0", "]", "collections", "=", "[", "coll", ".", "strip", "(", ")", "for", "c...

37.333333

0.005814

def build_arch(self, arch): '''Build any cython components, then install the Python module by calling setup.py install with the target Python dir. ''' Recipe.build_arch(self, arch) self.build_compiled_components(arch) self.install_python_package(arch)

[ "def", "build_arch", "(", "self", ",", "arch", ")", ":", "Recipe", ".", "build_arch", "(", "self", ",", "arch", ")", "self", ".", "build_compiled_components", "(", "arch", ")", "self", ".", "install_python_package", "(", "arch", ")" ]

41.857143

0.006689

def log(self, n=None, **kwargs): """ Run the repository log command Returns: str: output of log command (``hg log -l <n> <--kwarg=value>``) """ cmd = ['hg', 'log'] if n: cmd.extend('-l%d' % n) cmd.extend( (('--%s=%s' % (k, v)) ...

[ "def", "log", "(", "self", ",", "n", "=", "None", ",", "*", "*", "kwargs", ")", ":", "cmd", "=", "[", "'hg'", ",", "'log'", "]", "if", "n", ":", "cmd", ".", "extend", "(", "'-l%d'", "%", "n", ")", "cmd", ".", "extend", "(", "(", "(", "'--%s...

27

0.004773

def cmdline_params(self, structure_file_name, surface_sample_file_name): """Synthesize command line parameters e.g. [ ['struct.cssr'], ['struct.vsa'], [2.4]] """ parameters = [] parameters += [structure_file_name] parameters += [surface_sample_file_name] pm_dic...

[ "def", "cmdline_params", "(", "self", ",", "structure_file_name", ",", "surface_sample_file_name", ")", ":", "parameters", "=", "[", "]", "parameters", "+=", "[", "structure_file_name", "]", "parameters", "+=", "[", "surface_sample_file_name", "]", "pm_dict", "=", ...

29.142857

0.002372

async def set_slave_neighbors(self): '''Set neighbor environments for all the slave environments. Assumes that :attr:`neighbors` are set for this multi-environment. ''' for i, elem in enumerate(self._slave_origins): o, addr = elem r_slave = await self.env.connect(...

[ "async", "def", "set_slave_neighbors", "(", "self", ")", ":", "for", "i", ",", "elem", "in", "enumerate", "(", "self", ".", "_slave_origins", ")", ":", "o", ",", "addr", "=", "elem", "r_slave", "=", "await", "self", ".", "env", ".", "connect", "(", "...

50.5

0.001022

def open(self, url, *args, **kwargs): """Open the URL and store the Browser's state in this object. All arguments are forwarded to :func:`Browser.get`. :return: Forwarded from :func:`Browser.get`. """ if self.__verbose == 1: sys.stdout.write('.') sys.stdo...

[ "def", "open", "(", "self", ",", "url", ",", "*", "args", ",", "*", "*", "kwargs", ")", ":", "if", "self", ".", "__verbose", "==", "1", ":", "sys", ".", "stdout", ".", "write", "(", "'.'", ")", "sys", ".", "stdout", ".", "flush", "(", ")", "e...

35.3125

0.003448

def execute(self, timeSeries): """Creates a new TimeSeries containing the smoothed values. :return: TimeSeries object containing the smoothed TimeSeries, including the forecasted values. :rtype: TimeSeries :note: The first normalized value is chosen as the starting p...

[ "def", "execute", "(", "self", ",", "timeSeries", ")", ":", "# determine the number of values to forecast, if necessary", "self", ".", "_calculate_values_to_forecast", "(", "timeSeries", ")", "# extract the required parameters, performance improvement", "alpha", "=", "self", "....

35.890411

0.005572

def cluster_del_slots(self, slot, *slots): """Set hash slots as unbound in receiving node.""" slots = (slot,) + slots if not all(isinstance(s, int) for s in slots): raise TypeError("All parameters must be of type int") fut = self.execute(b'CLUSTER', b'DELSLOTS', *slots) ...

[ "def", "cluster_del_slots", "(", "self", ",", "slot", ",", "*", "slots", ")", ":", "slots", "=", "(", "slot", ",", ")", "+", "slots", "if", "not", "all", "(", "isinstance", "(", "s", ",", "int", ")", "for", "s", "in", "slots", ")", ":", "raise", ...

48

0.005848

def get_config(): """Read the configfile and return config dict. Returns ------- dict Dictionary with the content of the configpath file. """ configpath = get_configpath() if not configpath.exists(): raise IOError("Config file {} not found.".format(str(configpath))) else...

[ "def", "get_config", "(", ")", ":", "configpath", "=", "get_configpath", "(", ")", "if", "not", "configpath", ".", "exists", "(", ")", ":", "raise", "IOError", "(", "\"Config file {} not found.\"", ".", "format", "(", "str", "(", "configpath", ")", ")", ")...

27.4

0.002353

def title(self): """Extract title from a release.""" if self.event: if self.release['name']: return u'{0}: {1}'.format( self.repository['full_name'], self.release['name'] ) return u'{0} {1}'.format(self.repo_model.name, self.model.t...

[ "def", "title", "(", "self", ")", ":", "if", "self", ".", "event", ":", "if", "self", ".", "release", "[", "'name'", "]", ":", "return", "u'{0}: {1}'", ".", "format", "(", "self", ".", "repository", "[", "'full_name'", "]", ",", "self", ".", "release...

39.5

0.006192

def headinside(self): """The head inside the well Returns ------- array (length number of screens) Head inside the well for each screen """ h = self.model.head(self.xw + self.rw, self.yw, layers=self.layers) return h - se...

[ "def", "headinside", "(", "self", ")", ":", "h", "=", "self", ".", "model", ".", "head", "(", "self", ".", "xw", "+", "self", ".", "rw", ",", "self", ".", "yw", ",", "layers", "=", "self", ".", "layers", ")", "return", "h", "-", "self", ".", ...

28.5

0.014164

def _gather_group_members(group, groups, users): ''' Gather group members ''' _group = __salt__['group.info'](group) if not _group: log.warning('Group %s does not exist, ignoring.', group) return for member in _group['members']: if member not in users: users...

[ "def", "_gather_group_members", "(", "group", ",", "groups", ",", "users", ")", ":", "_group", "=", "__salt__", "[", "'group.info'", "]", "(", "group", ")", "if", "not", "_group", ":", "log", ".", "warning", "(", "'Group %s does not exist, ignoring.'", ",", ...

25.538462

0.002907

def get_cuda_devices(): """ Imports pycuda at runtime and reads GPU information. :return: A list of available cuda GPUs. """ devices = [] try: import pycuda.autoinit import pycuda.driver as cuda for device_id in range(cuda.Device.count()): vram = cuda.Devic...

[ "def", "get_cuda_devices", "(", ")", ":", "devices", "=", "[", "]", "try", ":", "import", "pycuda", ".", "autoinit", "import", "pycuda", ".", "driver", "as", "cuda", "for", "device_id", "in", "range", "(", "cuda", ".", "Device", ".", "count", "(", ")",...

26.85

0.003597

def make_posts(generator, metadata, url): """ Make posts on reddit if it's not a draft, on whatever subs are specified """ reddit = generator.get_reddit() title = lxml.html.fromstring(metadata['title']).text_content() if reddit is None: log.info("Reddit plugin not enabled") retu...

[ "def", "make_posts", "(", "generator", ",", "metadata", ",", "url", ")", ":", "reddit", "=", "generator", ".", "get_reddit", "(", ")", "title", "=", "lxml", ".", "html", ".", "fromstring", "(", "metadata", "[", "'title'", "]", ")", ".", "text_content", ...

40.296296

0.003591

def draw_material(material, face=GL_FRONT_AND_BACK): """Draw a single material""" if material.gl_floats is None: material.gl_floats = (GLfloat * len(material.vertices))(*material.vertices) material.triangle_count = len(material.vertices) / material.vertex_size vertex_format = VERTEX_FORMATS...

[ "def", "draw_material", "(", "material", ",", "face", "=", "GL_FRONT_AND_BACK", ")", ":", "if", "material", ".", "gl_floats", "is", "None", ":", "material", ".", "gl_floats", "=", "(", "GLfloat", "*", "len", "(", "material", ".", "vertices", ")", ")", "(...

37.051282

0.002023

def OpenEnumerateInstances(self, ClassName, namespace=None, LocalOnly=None, DeepInheritance=None, IncludeQualifiers=None, IncludeClassOrigin=None, PropertyList=None, FilterQueryLanguage=None, FilterQuery=None, ...

[ "def", "OpenEnumerateInstances", "(", "self", ",", "ClassName", ",", "namespace", "=", "None", ",", "LocalOnly", "=", "None", ",", "DeepInheritance", "=", "None", ",", "IncludeQualifiers", "=", "None", ",", "IncludeClassOrigin", "=", "None", ",", "PropertyList",...

46.235484

0.000546

def flags(name, use=None, accept_keywords=None, env=None, license=None, properties=None, unmask=False, mask=False): ''' Enforce the given flags on the given package or ``DEPEND`` atom. .. warning:: In most cases, the affected pa...

[ "def", "flags", "(", "name", ",", "use", "=", "None", ",", "accept_keywords", "=", "None", ",", "env", "=", "None", ",", "license", "=", "None", ",", "properties", "=", "None", ",", "unmask", "=", "False", ",", "mask", "=", "False", ")", ":", "ret"...

30.283019

0.001207

def printStatus(self): """Dumps different debug info about cluster to default logger""" status = self.getStatus() for k, v in iteritems(status): logging.info('%s: %s' % (str(k), str(v)))

[ "def", "printStatus", "(", "self", ")", ":", "status", "=", "self", ".", "getStatus", "(", ")", "for", "k", ",", "v", "in", "iteritems", "(", "status", ")", ":", "logging", ".", "info", "(", "'%s: %s'", "%", "(", "str", "(", "k", ")", ",", "str",...

43.6

0.009009

def _gen_hash(self, password, salt): """ Generate password hash. """ # generate hash h = hashlib.sha1() h.update(salt) h.update(password) return h.hexdigest()

[ "def", "_gen_hash", "(", "self", ",", "password", ",", "salt", ")", ":", "# generate hash", "h", "=", "hashlib", ".", "sha1", "(", ")", "h", ".", "update", "(", "salt", ")", "h", ".", "update", "(", "password", ")", "return", "h", ".", "hexdigest", ...

23

0.009302

def video_search(self, entitiy_type, query, **kwargs): """ Search the TV schedule database Where ``entitiy_type`` is a comma separated list of: ``movie`` Movie ``tvseries`` TV series ``episode`` Episode titles ``onetimeonly...

[ "def", "video_search", "(", "self", ",", "entitiy_type", ",", "query", ",", "*", "*", "kwargs", ")", ":", "return", "self", ".", "make_request", "(", "'video'", ",", "entitiy_type", ",", "query", ",", "kwargs", ")" ]

21.409091

0.004065

def get_items_batch(self, item_request_data, project=None): """GetItemsBatch. Post for retrieving a set of items given a list of paths or a long path. Allows for specifying the recursionLevel and version descriptors for each path. :param :class:`<TfvcItemRequestData> <azure.devops.v5_0.tfvc.mode...

[ "def", "get_items_batch", "(", "self", ",", "item_request_data", ",", "project", "=", "None", ")", ":", "route_values", "=", "{", "}", "if", "project", "is", "not", "None", ":", "route_values", "[", "'project'", "]", "=", "self", ".", "_serialize", ".", ...

60.705882

0.007634

def scanl(f: Callable[[T, U], T], x: T, xs: Iterable[U]) -> Iterator[T]: """ Make an iterator that returns accumulated results of a binary function applied to elements of an iterable. .. math:: scanl(f, x_0, [x_1, x_2, ...]) = [x_0, f(x_0, x_1), f(f(x_0, x_1), x_2), ...] Parameters -------...

[ "def", "scanl", "(", "f", ":", "Callable", "[", "[", "T", ",", "U", "]", ",", "T", "]", ",", "x", ":", "T", ",", "xs", ":", "Iterable", "[", "U", "]", ")", "->", "Iterator", "[", "T", "]", ":", "return", "accumulate", "(", "prepend", "(", "...

23.83871

0.003901

def addrs2managers(addrs): '''Map agent addresses to their assumed managers. .. seealso:: :func:`creamas.util.get_manager` ''' mgrs = {} for addr in addrs: mgr_addr = get_manager(addr) if mgr_addr not in mgrs: mgrs[mgr_addr] = [] mgrs[mgr_addr].append(ad...

[ "def", "addrs2managers", "(", "addrs", ")", ":", "mgrs", "=", "{", "}", "for", "addr", "in", "addrs", ":", "mgr_addr", "=", "get_manager", "(", "addr", ")", "if", "mgr_addr", "not", "in", "mgrs", ":", "mgrs", "[", "mgr_addr", "]", "=", "[", "]", "m...

23.285714

0.00295

def dynamic_import(import_string): """ Dynamically import a module or object. """ # Use rfind rather than rsplit for Python 2.3 compatibility. lastdot = import_string.rfind('.') if lastdot == -1: return __import__(import_string, {}, {}, []) module_name, attr = import_string[:lastdot]...

[ "def", "dynamic_import", "(", "import_string", ")", ":", "# Use rfind rather than rsplit for Python 2.3 compatibility.", "lastdot", "=", "import_string", ".", "rfind", "(", "'.'", ")", "if", "lastdot", "==", "-", "1", ":", "return", "__import__", "(", "import_string",...

39.909091

0.002227

def get_nas_credentials(self, identifier, **kwargs): """Returns a list of IDs of VLANs which match the given VLAN name. :param integer instance_id: the instance ID :returns: A dictionary containing a large amount of information about the specified instance. """ ...

[ "def", "get_nas_credentials", "(", "self", ",", "identifier", ",", "*", "*", "kwargs", ")", ":", "result", "=", "self", ".", "network_storage", ".", "getObject", "(", "id", "=", "identifier", ",", "*", "*", "kwargs", ")", "return", "result" ]

44.333333

0.004914

def get_docs_sources_from_ES(self): """Get document sources using MGET elasticsearch API""" docs = [doc for doc, _, _, get_from_ES in self.doc_to_update if get_from_ES] if docs: documents = self.docman.elastic.mget(body={"docs": docs}, realtime=True) return iter(documents...

[ "def", "get_docs_sources_from_ES", "(", "self", ")", ":", "docs", "=", "[", "doc", "for", "doc", ",", "_", ",", "_", ",", "get_from_ES", "in", "self", ".", "doc_to_update", "if", "get_from_ES", "]", "if", "docs", ":", "documents", "=", "self", ".", "do...

45.5

0.010782

def generate_nodeselector_dict(self, nodeselector_str): """ helper method for generating nodeselector dict :param nodeselector_str: :return: dict """ nodeselector = {} if nodeselector_str and nodeselector_str != 'none': constraints = [x.strip() for x i...

[ "def", "generate_nodeselector_dict", "(", "self", ",", "nodeselector_str", ")", ":", "nodeselector", "=", "{", "}", "if", "nodeselector_str", "and", "nodeselector_str", "!=", "'none'", ":", "constraints", "=", "[", "x", ".", "strip", "(", ")", "for", "x", "i...

42.769231

0.007042

def args_length(min_len, max_len, *args): """ 检查参数长度 """ not_null(*args) if not all(map(lambda v: min_len <= len(v) <= max_len, args)): raise ValueError("Argument length must be between {0} and {1}!".format(min_len, max_len))

[ "def", "args_length", "(", "min_len", ",", "max_len", ",", "*", "args", ")", ":", "not_null", "(", "*", "args", ")", "if", "not", "all", "(", "map", "(", "lambda", "v", ":", "min_len", "<=", "len", "(", "v", ")", "<=", "max_len", ",", "args", ")"...

32.25

0.007547

def _hash_token(application, token): """Creates a hashable object for given token then we could use it as a dictionary key. """ if isinstance(token, dict): hashed_token = tuple(sorted(token.items())) elif isinstance(token, tuple): hashed_token = token else: raise TypeErro...

[ "def", "_hash_token", "(", "application", ",", "token", ")", ":", "if", "isinstance", "(", "token", ",", "dict", ")", ":", "hashed_token", "=", "tuple", "(", "sorted", "(", "token", ".", "items", "(", ")", ")", ")", "elif", "isinstance", "(", "token", ...

35.5

0.002288

def mea_approximation(model, max_order, closure='scalar', *closure_args, **closure_kwargs): r""" A wrapper around :class:`~means.approximation.mea.moment_expansion_approximation.MomentExpansionApproximation`. It performs moment expansion approximation (MEA) up to a given order of moment. See :class:...

[ "def", "mea_approximation", "(", "model", ",", "max_order", ",", "closure", "=", "'scalar'", ",", "*", "closure_args", ",", "*", "*", "closure_kwargs", ")", ":", "mea", "=", "MomentExpansionApproximation", "(", "model", ",", "max_order", ",", "closure", "=", ...

54.692308

0.009682

def compare(self, value, expectation, regex_expr=False): """ Compares two values with regular expression matching support. Arguments: value (mixed): value to compare. expectation (mixed): value to match. regex_expr (bool, optional): enables string based regex...

[ "def", "compare", "(", "self", ",", "value", ",", "expectation", ",", "regex_expr", "=", "False", ")", ":", "return", "compare", "(", "value", ",", "expectation", ",", "regex_expr", "=", "regex_expr", ")" ]

33.153846

0.004515

def _transstat(status, grouppath, dictpath, line): """Executes processing steps when reading a line""" if status == 0: raise MTLParseError( "Status should not be '%s' after reading line:\n%s" % (STATUSCODE[status], line)) elif status == 1: currentdict = dictpath[-1] ...

[ "def", "_transstat", "(", "status", ",", "grouppath", ",", "dictpath", ",", "line", ")", ":", "if", "status", "==", "0", ":", "raise", "MTLParseError", "(", "\"Status should not be '%s' after reading line:\\n%s\"", "%", "(", "STATUSCODE", "[", "status", "]", ","...

37.439024

0.000635

def _highest_degree_variable_chooser(problem, variables, domains): ''' Choose the variable that is involved on more constraints. ''' # the variable involved in more constraints return sorted(variables, key=lambda v: problem.var_degrees[v], reverse=True)[0]

[ "def", "_highest_degree_variable_chooser", "(", "problem", ",", "variables", ",", "domains", ")", ":", "# the variable involved in more constraints", "return", "sorted", "(", "variables", ",", "key", "=", "lambda", "v", ":", "problem", ".", "var_degrees", "[", "v", ...

45.166667

0.007246

def _combine_individual_stats(self, operator_count, cv_score, individual_stats): """Combine the stats with operator count and cv score and preprare to be written to _evaluated_individuals Parameters ---------- operator_count: int number of components in the pipeline ...

[ "def", "_combine_individual_stats", "(", "self", ",", "operator_count", ",", "cv_score", ",", "individual_stats", ")", ":", "stats", "=", "deepcopy", "(", "individual_stats", ")", "# Deepcopy, since the string reference to predecessor should be cloned", "stats", "[", "'oper...

50.357143

0.005567

def _parse_content(self, snv_entries): """ Parses SNV entries to SNVItems, objects representing the content for every entry, that can be used for further processing. """ if len(snv_entries) == 1: return for line in snv_entries[1:]: info_dic...

[ "def", "_parse_content", "(", "self", ",", "snv_entries", ")", ":", "if", "len", "(", "snv_entries", ")", "==", "1", ":", "return", "for", "line", "in", "snv_entries", "[", "1", ":", "]", ":", "info_dict", "=", "self", ".", "_map_info_to_col", "(", "li...

36.090909

0.004914

def _sort(self, short_list, sorts): """ TAKE SHORTLIST, RETURN IT SORTED :param short_list: :param sorts: LIST OF SORTS TO PERFORM :return: """ sort_values = self._index_columns(sorts) # RECURSIVE SORTING output = [] def _sort_more(short_...

[ "def", "_sort", "(", "self", ",", "short_list", ",", "sorts", ")", ":", "sort_values", "=", "self", ".", "_index_columns", "(", "sorts", ")", "# RECURSIVE SORTING", "output", "=", "[", "]", "def", "_sort_more", "(", "short_list", ",", "i", ",", "sorts", ...

28.032258

0.003337

def _compute_site_class_dummy_variables(cls, vs30): """ Extend :meth:`AtkinsonBoore2003SInter._compute_site_class_dummy_variables` and includes dummy variable for B/C site conditions (vs30 > 760.) """ Sbc = np.zeros_like(vs30) Sc = np.zeros_like(vs30) Sd =...

[ "def", "_compute_site_class_dummy_variables", "(", "cls", ",", "vs30", ")", ":", "Sbc", "=", "np", ".", "zeros_like", "(", "vs30", ")", "Sc", "=", "np", ".", "zeros_like", "(", "vs30", ")", "Sd", "=", "np", ".", "zeros_like", "(", "vs30", ")", "Se", ...

31.588235

0.003617

def addfield(self, pkt, s, val): """Add an internal value to a string""" tmp_len = self.length_of(pkt) if tmp_len == 0: return s internal = self.i2m(pkt, val)[-tmp_len:] return s + struct.pack("!%ds" % tmp_len, internal)

[ "def", "addfield", "(", "self", ",", "pkt", ",", "s", ",", "val", ")", ":", "tmp_len", "=", "self", ".", "length_of", "(", "pkt", ")", "if", "tmp_len", "==", "0", ":", "return", "s", "internal", "=", "self", ".", "i2m", "(", "pkt", ",", "val", ...

38.142857

0.007326

def execute_download_request(request): """ Executes download request. :param request: DownloadRequest to be executed :type request: DownloadRequest :return: downloaded data or None :rtype: numpy array, other possible data type or None :raises: DownloadFailedException """ if request.save...

[ "def", "execute_download_request", "(", "request", ")", ":", "if", "request", ".", "save_response", "and", "request", ".", "data_folder", "is", "None", ":", "raise", "ValueError", "(", "'Data folder is not specified. '", "'Please give a data folder name in the initializatio...

46.622642

0.003171

def gene_forms(self): """ :return: List of strings for all available gene forms :rtype: list[str] """ q = self.session.query(distinct(models.ChemGeneIxnGeneForm.gene_form)) return [x[0] for x in q.all()]

[ "def", "gene_forms", "(", "self", ")", ":", "q", "=", "self", ".", "session", ".", "query", "(", "distinct", "(", "models", ".", "ChemGeneIxnGeneForm", ".", "gene_form", ")", ")", "return", "[", "x", "[", "0", "]", "for", "x", "in", "q", ".", "all"...

35

0.007968

def close(self): """Close the listening sockets and all accepted connections.""" for handle in self._handles: if not handle.closed: handle.close() del self._handles[:] for transport, _ in self.connections: transport.close() self._all_closed...

[ "def", "close", "(", "self", ")", ":", "for", "handle", "in", "self", ".", "_handles", ":", "if", "not", "handle", ".", "closed", ":", "handle", ".", "close", "(", ")", "del", "self", ".", "_handles", "[", ":", "]", "for", "transport", ",", "_", ...

35.444444

0.006116

def gen_experiment_id(n=10): """Generate a random string with n characters. Parameters ---------- n : int The length of the string to be generated. Returns ------- :obj:`str` A string with only alphabetic characters. """ chrs = 'abcdefghijklmnopqrstuvwxyz' inds...

[ "def", "gen_experiment_id", "(", "n", "=", "10", ")", ":", "chrs", "=", "'abcdefghijklmnopqrstuvwxyz'", "inds", "=", "np", ".", "random", ".", "randint", "(", "0", ",", "len", "(", "chrs", ")", ",", "size", "=", "n", ")", "return", "''", ".", "join",...

24.375

0.007407

def compute_allele_frequencies(self, using=None): "Computes the allele frequencies across all samples in this cohort." if using is None: using = router.db_for_write(self.__class__) cursor = connections[using].cursor() with transition(self, 'Recomputed Allele Frequencies'): ...

[ "def", "compute_allele_frequencies", "(", "self", ",", "using", "=", "None", ")", ":", "if", "using", "is", "None", ":", "using", "=", "router", ".", "db_for_write", "(", "self", ".", "__class__", ")", "cursor", "=", "connections", "[", "using", "]", "."...

46.725

0.001048

def find_files(args): ''' Return list of spec files. `args` may be filenames which are passed right through, or directories in which case they are searched recursively for *._spec.py ''' files_or_dirs = args or ['.'] filenames = [] for f in files_or_dirs: if path.isdir(f): ...

[ "def", "find_files", "(", "args", ")", ":", "files_or_dirs", "=", "args", "or", "[", "'.'", "]", "filenames", "=", "[", "]", "for", "f", "in", "files_or_dirs", ":", "if", "path", ".", "isdir", "(", "f", ")", ":", "filenames", ".", "extend", "(", "g...

35.0625

0.003472

def startswith(self, prefix, start=None, end=None): """Return whether the current bitstring starts with prefix. prefix -- The bitstring to search for. start -- The bit position to start from. Defaults to 0. end -- The bit position to end at. Defaults to self.len. """ pr...

[ "def", "startswith", "(", "self", ",", "prefix", ",", "start", "=", "None", ",", "end", "=", "None", ")", ":", "prefix", "=", "Bits", "(", "prefix", ")", "start", ",", "end", "=", "self", ".", "_validate_slice", "(", "start", ",", "end", ")", "if",...

37.428571

0.003724

def get(object_ids): """Get a single or a collection of remote objects from the object store. This method is identical to `ray.get` except it adds support for tuples, ndarrays and dictionaries. Args: object_ids: Object ID of the object to get, a list, tuple, ndarray of object IDs t...

[ "def", "get", "(", "object_ids", ")", ":", "if", "isinstance", "(", "object_ids", ",", "(", "tuple", ",", "np", ".", "ndarray", ")", ")", ":", "return", "ray", ".", "get", "(", "list", "(", "object_ids", ")", ")", "elif", "isinstance", "(", "object_i...

33.4

0.00097

def flatten(nested_list: list) -> list: """Flattens a list, ignore all the lambdas.""" return list(sorted(filter(lambda y: y is not None, list(map(lambda x: (nested_list.extend(x) # noqa: T484 if isinstance(x, list) else x), ...

[ "def", "flatten", "(", "nested_list", ":", "list", ")", "->", "list", ":", "return", "list", "(", "sorted", "(", "filter", "(", "lambda", "y", ":", "y", "is", "not", "None", ",", "list", "(", "map", "(", "lambda", "x", ":", "(", "nested_list", ".",...

60.666667

0.00542

def form(self, usr=None, **kwargs): """ Returns an HTTPForm that matches the given criteria Searches for an HTML form in the page's content matching the criteria specified in kwargs. If a form is found, returns an HTTPForm instance that represents the form. P...

[ "def", "form", "(", "self", ",", "usr", "=", "None", ",", "*", "*", "kwargs", ")", ":", "if", "self", ".", "usr", ":", "usr", "=", "self", ".", "usr", "if", "self", ".", "find", "(", "\"form\"", ",", "kwargs", ")", ":", "return", "HTTPForm", "(...

42.235294

0.010899

def _parse_json(self, resources, exactly_one=True): """ Parse type, words, latitude, and longitude and language from a JSON response. """ code = resources['status'].get('code') if code: # https://docs.what3words.com/api/v2/#errors exc_msg = "Erro...

[ "def", "_parse_json", "(", "self", ",", "resources", ",", "exactly_one", "=", "True", ")", ":", "code", "=", "resources", "[", "'status'", "]", ".", "get", "(", "'code'", ")", "if", "code", ":", "# https://docs.what3words.com/api/v2/#errors", "exc_msg", "=", ...

32.342105

0.00237

def fetchmany(self, size=None): """Fetch many""" self._check_executed() if size is None: size = self.arraysize rows = [] for i in range_type(size): row = self.read_next() if row is None: break rows.append(row) ...

[ "def", "fetchmany", "(", "self", ",", "size", "=", "None", ")", ":", "self", ".", "_check_executed", "(", ")", "if", "size", "is", "None", ":", "size", "=", "self", ".", "arraysize", "rows", "=", "[", "]", "for", "i", "in", "range_type", "(", "size...

25.214286

0.005464

def notify_start(self, data): """Call this to trigger startup actions. This logs the process startup and sets the state to 'running'. It is a pass-through so it can be used as a callback. """ self.log.debug('Process %r started: %r', self.args[0], data) self.start_data ...

[ "def", "notify_start", "(", "self", ",", "data", ")", ":", "self", ".", "log", ".", "debug", "(", "'Process %r started: %r'", ",", "self", ".", "args", "[", "0", "]", ",", "data", ")", "self", ".", "start_data", "=", "data", "self", ".", "state", "="...

33.363636

0.005305

def _images(self, sys_output): ''' a helper method for parsing docker image output ''' import re gap_pattern = re.compile('\t|\s{2,}') image_list = [] output_lines = sys_output.split('\n') column_headers = gap_pattern.split(output_lines[0]) for i in...

[ "def", "_images", "(", "self", ",", "sys_output", ")", ":", "import", "re", "gap_pattern", "=", "re", ".", "compile", "(", "'\\t|\\s{2,}'", ")", "image_list", "=", "[", "]", "output_lines", "=", "sys_output", ".", "split", "(", "'\\n'", ")", "column_header...

37.277778

0.007267

def extract_data(self): """Extracts data from archive. Returns: PackageData object containing the extracted data. """ data = PackageData( local_file=self.local_file, name=self.name, pkg_name=self.rpm_name or self.name_convertor.rpm_name( ...

[ "def", "extract_data", "(", "self", ")", ":", "data", "=", "PackageData", "(", "local_file", "=", "self", ".", "local_file", ",", "name", "=", "self", ".", "name", ",", "pkg_name", "=", "self", ".", "rpm_name", "or", "self", ".", "name_convertor", ".", ...

36.217391

0.002339

def _parse_sot_segment(self, fptr): """Parse the SOT segment. Parameters ---------- fptr : file Open file object. Returns ------- SOTSegment The current SOT segment. """ offset = fptr.tell() - 2 read_buffer = fptr...

[ "def", "_parse_sot_segment", "(", "self", ",", "fptr", ")", ":", "offset", "=", "fptr", ".", "tell", "(", ")", "-", "2", "read_buffer", "=", "fptr", ".", "read", "(", "10", ")", "data", "=", "struct", ".", "unpack", "(", "'>HHIBB'", ",", "read_buffer...

26

0.001951

def learn(self, msg, learnas): """Learn message as spam/ham or forget""" if not isinstance(learnas, types.StringTypes): raise SpamCError('The learnas option is invalid') if learnas.lower() == 'forget': resp = self.tell(msg, 'forget') else: resp = self....

[ "def", "learn", "(", "self", ",", "msg", ",", "learnas", ")", ":", "if", "not", "isinstance", "(", "learnas", ",", "types", ".", "StringTypes", ")", ":", "raise", "SpamCError", "(", "'The learnas option is invalid'", ")", "if", "learnas", ".", "lower", "("...

39.888889

0.00545

def _ParseCommentRecord(self, structure): """Parse a comment and store appropriate attributes. Args: structure (pyparsing.ParseResults): parsed log line. """ comment = structure[1] if comment.startswith('Version'): _, _, self._version = comment.partition(':') elif comment.startswith...

[ "def", "_ParseCommentRecord", "(", "self", ",", "structure", ")", ":", "comment", "=", "structure", "[", "1", "]", "if", "comment", ".", "startswith", "(", "'Version'", ")", ":", "_", ",", "_", ",", "self", ".", "_version", "=", "comment", ".", "partit...

35.866667

0.009058

def split_ext(path, basename=True): """Wrap them to make life easier.""" if basename: path = os.path.basename(path) return os.path.splitext(path)

[ "def", "split_ext", "(", "path", ",", "basename", "=", "True", ")", ":", "if", "basename", ":", "path", "=", "os", ".", "path", ".", "basename", "(", "path", ")", "return", "os", ".", "path", ".", "splitext", "(", "path", ")" ]

32.2

0.006061

def parse_args(self, args=None, namespace=None, defaults=None): """Parse args, returns a tuple of a parser and ParsedArgs object Args: args -- sequence of strings representing the arguments to parse namespace -- object to use for holding arguments defaults -- la...

[ "def", "parse_args", "(", "self", ",", "args", "=", "None", ",", "namespace", "=", "None", ",", "defaults", "=", "None", ")", ":", "epilog", "=", "self", ".", "subparsers_summary", "(", ")", "epilog", "+=", "self", ".", "epilog", "return", "self", "(",...

54.428571

0.007742

def cache_last_modified(request, *argz, **kwz): '''Last modification date for a cached page. Intended for usage in conditional views (@condition decorator).''' response, site, cachekey = kwz.get('_view_data') or initview(request) if not response: return None return response[1]

[ "def", "cache_last_modified", "(", "request", ",", "*", "argz", ",", "*", "*", "kwz", ")", ":", "response", ",", "site", ",", "cachekey", "=", "kwz", ".", "get", "(", "'_view_data'", ")", "or", "initview", "(", "request", ")", "if", "not", "response", ...

46.333333

0.024735

def build(self): """ Build vocabulary. """ token_freq = self._token_count.most_common(self._max_size) idx = len(self.vocab) for token, _ in token_freq: self._token2id[token] = idx self._id2token.append(token) idx += 1 if self._u...

[ "def", "build", "(", "self", ")", ":", "token_freq", "=", "self", ".", "_token_count", ".", "most_common", "(", "self", ".", "_max_size", ")", "idx", "=", "len", "(", "self", ".", "vocab", ")", "for", "token", ",", "_", "in", "token_freq", ":", "self...

29.5

0.004695

def agent_color(self, val): """ gets a colour for agent 0 - 9 """ if val == '0': colour = 'blue' elif val == '1': colour = 'navy' elif val == '2': colour = 'firebrick' elif val == '3': colour = 'blue' elif v...

[ "def", "agent_color", "(", "self", ",", "val", ")", ":", "if", "val", "==", "'0'", ":", "colour", "=", "'blue'", "elif", "val", "==", "'1'", ":", "colour", "=", "'navy'", "elif", "val", "==", "'2'", ":", "colour", "=", "'firebrick'", "elif", "val", ...

22.821429

0.009009

def get_folder(self, *, folder_id=None, folder_name=None): """ Get a folder by it's id or name :param str folder_id: the folder_id to be retrieved. Can be any folder Id (child or not) :param str folder_name: the folder name to be retrieved. Must be a child of this folder. ...

[ "def", "get_folder", "(", "self", ",", "*", ",", "folder_id", "=", "None", ",", "folder_name", "=", "None", ")", ":", "if", "folder_id", "and", "folder_name", ":", "raise", "RuntimeError", "(", "'Provide only one of the options'", ")", "if", "not", "folder_id"...

40.88

0.001433

def authenticated_userid(request): """Helper function that can be used in ``db_key`` to support `self` as a collection key. """ user = getattr(request, 'user', None) key = user.pk_field() return getattr(user, key)

[ "def", "authenticated_userid", "(", "request", ")", ":", "user", "=", "getattr", "(", "request", ",", "'user'", ",", "None", ")", "key", "=", "user", ".", "pk_field", "(", ")", "return", "getattr", "(", "user", ",", "key", ")" ]

33

0.004219

def path_exists(value, allow_empty = False, **kwargs): """Validate that ``value`` is a path-like object that exists on the local filesystem. :param value: The value to validate. :param allow_empty: If ``True``, returns :obj:`None <python:None>` if ``value`` is emp...

[ "def", "path_exists", "(", "value", ",", "allow_empty", "=", "False", ",", "*", "*", "kwargs", ")", ":", "if", "not", "value", "and", "not", "allow_empty", ":", "raise", "errors", ".", "EmptyValueError", "(", "'value (%s) was empty'", "%", "value", ")", "e...

35.441176

0.004847

def random_patt_uniform(nrows, ncols, patt_type=scalar): """Returns a ScalarPatternUniform object or a VectorPatternUniform object where each of the elements is set to a normal random variable with zero mean and unit standard deviation. *nrows* is the number of rows in the pattern, which correspon...

[ "def", "random_patt_uniform", "(", "nrows", ",", "ncols", ",", "patt_type", "=", "scalar", ")", ":", "if", "np", ".", "mod", "(", "ncols", ",", "2", ")", "==", "1", ":", "raise", "ValueError", "(", "err_msg", "[", "'ncols_even'", "]", ")", "if", "(",...

41

0.005955

def _fastfood_build(args): """Run on `fastfood build`.""" written_files, cookbook = food.build_cookbook( args.config_file, args.template_pack, args.cookbooks, args.force) if len(written_files) > 0: print("%s: %s files written" % (cookbook, len...

[ "def", "_fastfood_build", "(", "args", ")", ":", "written_files", ",", "cookbook", "=", "food", ".", "build_cookbook", "(", "args", ".", "config_file", ",", "args", ".", "template_pack", ",", "args", ".", "cookbooks", ",", "args", ".", "force", ")", "if", ...

31.769231

0.002353

def lcs_logs(): """ Pull Retrosheet LCS Game Logs """ file_name = 'GLLC.TXT' z = get_zip_file(lcs_url) data = pd.read_csv(z.open(file_name), header=None, sep=',', quotechar='"') data.columns = gamelog_columns return data

[ "def", "lcs_logs", "(", ")", ":", "file_name", "=", "'GLLC.TXT'", "z", "=", "get_zip_file", "(", "lcs_url", ")", "data", "=", "pd", ".", "read_csv", "(", "z", ".", "open", "(", "file_name", ")", ",", "header", "=", "None", ",", "sep", "=", "','", "...

27.111111

0.003968

def following_qs(self, user, *models, **kwargs): """ Returns a queryset of actors that the given user is following (eg who im following). Items in the list can be of any model unless a list of restricted models are passed. Eg following(user, User) will only return users following the giv...

[ "def", "following_qs", "(", "self", ",", "user", ",", "*", "models", ",", "*", "*", "kwargs", ")", ":", "qs", "=", "self", ".", "filter", "(", "user", "=", "user", ")", "ctype_filters", "=", "Q", "(", ")", "for", "model", "in", "models", ":", "ch...

39.888889

0.008163

def _make_regs_symbolic(input_state, reg_list, project): """ converts an input state into a state with symbolic registers :return: the symbolic state """ state = input_state.copy() # overwrite all registers for reg in reg_list: state.registers.store(re...

[ "def", "_make_regs_symbolic", "(", "input_state", ",", "reg_list", ",", "project", ")", ":", "state", "=", "input_state", ".", "copy", "(", ")", "# overwrite all registers", "for", "reg", "in", "reg_list", ":", "state", ".", "registers", ".", "store", "(", "...

38.428571

0.005445

def search_in_rubric(self, **kwargs): """Firms search in rubric http://api.2gis.ru/doc/firms/searches/searchinrubric/ """ point = kwargs.pop('point', False) if point: kwargs['point'] = '%s,%s' % point bound = kwargs.pop('bound', False) if bound: ...

[ "def", "search_in_rubric", "(", "self", ",", "*", "*", "kwargs", ")", ":", "point", "=", "kwargs", ".", "pop", "(", "'point'", ",", "False", ")", "if", "point", ":", "kwargs", "[", "'point'", "]", "=", "'%s,%s'", "%", "point", "bound", "=", "kwargs",...

28.285714

0.003257

def set_environment(self, environment): """Set the environment for all nodes.""" todo = deque([self]) while todo: node = todo.popleft() node.environment = environment todo.extend(node.iter_child_nodes()) return self

[ "def", "set_environment", "(", "self", ",", "environment", ")", ":", "todo", "=", "deque", "(", "[", "self", "]", ")", "while", "todo", ":", "node", "=", "todo", ".", "popleft", "(", ")", "node", ".", "environment", "=", "environment", "todo", ".", "...

34.5

0.007067

def _key_index_iter(self) -> Iterator[Tuple[str, Any]]: """ Allows for iteration over the ``KeyIndex`` values. This function is intended to be assigned to a newly created KeyIndex class. It enables iteration over the ``KeyIndex`` names and values. We don't use a mixin to avoid issues with YAML. Note: ...

[ "def", "_key_index_iter", "(", "self", ")", "->", "Iterator", "[", "Tuple", "[", "str", ",", "Any", "]", "]", ":", "for", "k", ",", "v", "in", "vars", "(", "self", ")", ".", "items", "(", ")", ":", "yield", "k", ",", "v" ]

45.166667

0.007233

def visit_FunctionCall(self, node): """Visitor for `FunctionCall` AST node.""" call = self.memory[node.identifier.name]._node args = [self.visit(parameter) for parameter in node.parameters] if isinstance(call, AST): current_scope = self.memory.stack.current.current ...

[ "def", "visit_FunctionCall", "(", "self", ",", "node", ")", ":", "call", "=", "self", ".", "memory", "[", "node", ".", "identifier", ".", "name", "]", ".", "_node", "args", "=", "[", "self", ".", "visit", "(", "parameter", ")", "for", "parameter", "i...

33.961538

0.002203

def get_gene_pathways(self, gene_name=None, gene_symbol=None, gene_id=None, pathway_id=None, pathway_name=None, limit=None, as_df=False): """Get gene pathway link :param bool as_df: if set to True result returns as `pandas.DataFrame` :param str gene_name: gene ...

[ "def", "get_gene_pathways", "(", "self", ",", "gene_name", "=", "None", ",", "gene_symbol", "=", "None", ",", "gene_id", "=", "None", ",", "pathway_id", "=", "None", ",", "pathway_name", "=", "None", ",", "limit", "=", "None", ",", "as_df", "=", "False",...

42.884615

0.009649

def remove_redundant_accidentals(note): """Remove redundant sharps and flats from the given note. Examples: >>> remove_redundant_accidentals('C##b') 'C#' >>> remove_redundant_accidentals('Eb##b') 'E' """ val = 0 for token in note[1:]: if token == 'b': val -= 1 ...

[ "def", "remove_redundant_accidentals", "(", "note", ")", ":", "val", "=", "0", "for", "token", "in", "note", "[", "1", ":", "]", ":", "if", "token", "==", "'b'", ":", "val", "-=", "1", "elif", "token", "==", "'#'", ":", "val", "+=", "1", "result", ...

22.652174

0.001842

def _ipc_send(self, sock, message_type, payload): ''' Send and receive a message from the ipc. NOTE: this is not thread safe ''' sock.sendall(self._pack(message_type, payload)) data, msg_type = self._ipc_recv(sock) return data

[ "def", "_ipc_send", "(", "self", ",", "sock", ",", "message_type", ",", "payload", ")", ":", "sock", ".", "sendall", "(", "self", ".", "_pack", "(", "message_type", ",", "payload", ")", ")", "data", ",", "msg_type", "=", "self", ".", "_ipc_recv", "(", ...

34.375

0.007092

def restore(name): """Restores the database from a snapshot""" app = get_app() if not name: snapshot = app.get_latest_snapshot() if not snapshot: click.echo( "Couldn't find any snapshots for project %s" % load_config()['project_name'] ...

[ "def", "restore", "(", "name", ")", ":", "app", "=", "get_app", "(", ")", "if", "not", "name", ":", "snapshot", "=", "app", ".", "get_latest_snapshot", "(", ")", "if", "not", "snapshot", ":", "click", ".", "echo", "(", "\"Couldn't find any snapshots for pr...

31.121951

0.00076

def _update_project(config, task_presenter, results, long_description, tutorial): """Update a project.""" try: # Get project project = find_project_by_short_name(config.project['short_name'], config.pbclient, ...

[ "def", "_update_project", "(", "config", ",", "task_presenter", ",", "results", ",", "long_description", ",", "tutorial", ")", ":", "try", ":", "# Get project", "project", "=", "find_project_by_short_name", "(", "config", ".", "project", "[", "'short_name'", "]", ...

44

0.002471

def _p_iteration(self, P, Bp_solver, Vm, Va, pvpq): """ Performs a P iteration, updates Va. """ dVa = -Bp_solver.solve(P) # Update voltage. Va[pvpq] = Va[pvpq] + dVa V = Vm * exp(1j * Va) return V, Vm, Va

[ "def", "_p_iteration", "(", "self", ",", "P", ",", "Bp_solver", ",", "Vm", ",", "Va", ",", "pvpq", ")", ":", "dVa", "=", "-", "Bp_solver", ".", "solve", "(", "P", ")", "# Update voltage.", "Va", "[", "pvpq", "]", "=", "Va", "[", "pvpq", "]", "+",...

25.3

0.007634

def get_checked(self): """Return the list of checked items that do not have any child.""" checked = [] def get_checked_children(item): if not self.tag_has("unchecked", item): ch = self.get_children(item) if not ch and self.tag_has("checked", item): ...

[ "def", "get_checked", "(", "self", ")", ":", "checked", "=", "[", "]", "def", "get_checked_children", "(", "item", ")", ":", "if", "not", "self", ".", "tag_has", "(", "\"unchecked\"", ",", "item", ")", ":", "ch", "=", "self", ".", "get_children", "(", ...

33

0.003466