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wummel/linkchecker
linkcheck/fileutil.py
https://github.com/wummel/linkchecker/blob/c2ce810c3fb00b895a841a7be6b2e78c64e7b042/linkcheck/fileutil.py#L31-L57
def write_file (filename, content, backup=False, callback=None): """Overwrite a possibly existing file with new content. Do this in a manner that does not leave truncated or broken files behind. @param filename: name of file to write @type filename: string @param content: file content to write @...
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Overwrite a possibly existing file with new content. Do this in a manner that does not leave truncated or broken files behind. @param filename: name of file to write @type filename: string @param content: file content to write @type content: string @param backup: if backup file should be left ...
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python
train
vpelletier/python-libusb1
usb1/__init__.py
https://github.com/vpelletier/python-libusb1/blob/740c9778e28523e4ec3543415d95f5400ae0fa24/usb1/__init__.py#L692-L710
def getISOBufferList(self): """ Get individual ISO transfer's buffer. Returns a list with one item per ISO transfer, with their individually-configured sizes. Returned list is consistent with getISOSetupList return value. Should not be called on a submitted transfer. ...
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Get individual ISO transfer's buffer. Returns a list with one item per ISO transfer, with their individually-configured sizes. Returned list is consistent with getISOSetupList return value. Should not be called on a submitted transfer. See also iterISO.
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python
train
pytorch/ignite
ignite/contrib/handlers/param_scheduler.py
https://github.com/pytorch/ignite/blob/a96bd07cb58822cfb39fd81765135712f1db41ca/ignite/contrib/handlers/param_scheduler.py#L460-L481
def simulate_values(cls, num_events, lr_scheduler, **kwargs): """Method to simulate scheduled values during num_events events. Args: num_events (int): number of events during the simulation. lr_scheduler (subclass of `torch.optim.lr_scheduler._LRScheduler`): lr_scheduler object ...
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Method to simulate scheduled values during num_events events. Args: num_events (int): number of events during the simulation. lr_scheduler (subclass of `torch.optim.lr_scheduler._LRScheduler`): lr_scheduler object to wrap. Returns: list of pairs: [event_index, value...
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python
train
MacHu-GWU/docfly-project
docfly/api_reference_doc.py
https://github.com/MacHu-GWU/docfly-project/blob/46da8a9793211301c3ebc12d195228dbf79fdfec/docfly/api_reference_doc.py#L144-L170
def generate_package_content(self, package): """Generate package.rst text content. :: {{ package_name }} ================== .. automodule:: {{ package_name }} :members: sub packages and modules ------------------------ ...
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Generate package.rst text content. :: {{ package_name }} ================== .. automodule:: {{ package_name }} :members: sub packages and modules ------------------------ .. toctree:: :maxdepth: 1 ...
[ "Generate", "package", ".", "rst", "text", "content", "." ]
python
train
gabstopper/smc-python
smc/core/node.py
https://github.com/gabstopper/smc-python/blob/e027b8a5dcfaf884eada32d113d41c1e56b32457/smc/core/node.py#L532-L546
def change_ssh_pwd(self, pwd=None, comment=None): """ Executes a change SSH password operation on the specified node :param str pwd: changed password value :param str comment: optional comment for audit log :raises NodeCommandFailed: cannot change ssh password :return: N...
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Executes a change SSH password operation on the specified node :param str pwd: changed password value :param str comment: optional comment for audit log :raises NodeCommandFailed: cannot change ssh password :return: None
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python
train
pandas-dev/pandas
pandas/plotting/_misc.py
https://github.com/pandas-dev/pandas/blob/9feb3ad92cc0397a04b665803a49299ee7aa1037/pandas/plotting/_misc.py#L14-L133
def scatter_matrix(frame, alpha=0.5, figsize=None, ax=None, grid=False, diagonal='hist', marker='.', density_kwds=None, hist_kwds=None, range_padding=0.05, **kwds): """ Draw a matrix of scatter plots. Parameters ---------- frame : DataFrame alpha : float, o...
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Draw a matrix of scatter plots. Parameters ---------- frame : DataFrame alpha : float, optional amount of transparency applied figsize : (float,float), optional a tuple (width, height) in inches ax : Matplotlib axis object, optional grid : bool, optional setting this...
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python
train
mbanton/nose-mongoengine
nose_mongoengine/__init__.py
https://github.com/mbanton/nose-mongoengine/blob/3a06f52cd32f217b512af4a76d8ed4174185df59/nose_mongoengine/__init__.py#L125-L227
def configure(self, options, conf): """Parse the command line options and start an instance of mongodb """ # This option has to be specified on the command line, to enable the # plugin. if not options.mongoengine or options.mongodb_bin: return if not options....
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Parse the command line options and start an instance of mongodb
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python
train
tgbugs/ontquery
ontquery/plugins/interlex_client.py
https://github.com/tgbugs/ontquery/blob/bcf4863cb2bf221afe2b093c5dc7da1377300041/ontquery/plugins/interlex_client.py#L403-L517
def update_entity( self, ilx_id: str, label: str = None, type: str = None, definition: str = None, comment: str = None, superclass: str = None, synonyms: list = None) -> dict: """ Updates pre-existing entity as long as the api_key is from the accou...
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Updates pre-existing entity as long as the api_key is from the account that created it Args: label: name of entity type: entities type Can be any of the following: term, cde, fde, pde, annotation, relationship definition: entities definiti...
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python
train
SpriteLink/NIPAP
pynipap/pynipap.py
https://github.com/SpriteLink/NIPAP/blob/f96069f11ab952d80b13cab06e0528f2d24b3de9/pynipap/pynipap.py#L1077-L1111
def smart_search(cls, query_string, search_options=None, extra_query = None): """ Perform a smart prefix search. Maps to the function :py:func:`nipap.backend.Nipap.smart_search_prefix` in the backend. Please see the documentation for the backend function for info...
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Perform a smart prefix search. Maps to the function :py:func:`nipap.backend.Nipap.smart_search_prefix` in the backend. Please see the documentation for the backend function for information regarding input arguments and return values.
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python
train
openego/eDisGo
edisgo/data/import_data.py
https://github.com/openego/eDisGo/blob/e6245bdaf236f9c49dbda5a18c1c458290f41e2b/edisgo/data/import_data.py#L118-L250
def _build_lv_grid(ding0_grid, network): """ Build eDisGo LV grid from Ding0 data Parameters ---------- ding0_grid: ding0.MVGridDing0 Ding0 MV grid object Returns ------- list of LVGrid LV grids dict Dictionary containing a mapping of LV stations in Ding0 to...
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Build eDisGo LV grid from Ding0 data Parameters ---------- ding0_grid: ding0.MVGridDing0 Ding0 MV grid object Returns ------- list of LVGrid LV grids dict Dictionary containing a mapping of LV stations in Ding0 to newly created eDisGo LV stations. This mappi...
[ "Build", "eDisGo", "LV", "grid", "from", "Ding0", "data" ]
python
train
yinkaisheng/Python-UIAutomation-for-Windows
uiautomation/uiautomation.py
https://github.com/yinkaisheng/Python-UIAutomation-for-Windows/blob/2cc91060982cc8b777152e698d677cc2989bf263/uiautomation/uiautomation.py#L2187-L2199
def SetWindowPos(handle: int, hWndInsertAfter: int, x: int, y: int, width: int, height: int, flags: int) -> bool: """ SetWindowPos from Win32. handle: int, the handle of a native window. hWndInsertAfter: int, a value whose name starts with 'HWND' in class SWP. x: int. y: int. width: int. ...
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SetWindowPos from Win32. handle: int, the handle of a native window. hWndInsertAfter: int, a value whose name starts with 'HWND' in class SWP. x: int. y: int. width: int. height: int. flags: int, values whose name starts with 'SWP' in class `SWP`. Return bool, True if succeed otherwise F...
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python
valid
tensorpack/tensorpack
tensorpack/tfutils/varreplace.py
https://github.com/tensorpack/tensorpack/blob/d7a13cb74c9066bc791d7aafc3b744b60ee79a9f/tensorpack/tfutils/varreplace.py#L59-L97
def freeze_variables(stop_gradient=True, skip_collection=False): """ Return a context to freeze variables, by wrapping ``tf.get_variable`` with a custom getter. It works by either applying ``tf.stop_gradient`` on the variables, or by keeping them out of the ``TRAINABLE_VARIABLES`` collection, or ...
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Return a context to freeze variables, by wrapping ``tf.get_variable`` with a custom getter. It works by either applying ``tf.stop_gradient`` on the variables, or by keeping them out of the ``TRAINABLE_VARIABLES`` collection, or both. Example: .. code-block:: python with varrepl...
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python
train
openstax/cnx-publishing
cnxpublishing/subscribers.py
https://github.com/openstax/cnx-publishing/blob/f55b4a2c45d8618737288f1b74b4139d5ac74154/cnxpublishing/subscribers.py#L32-L64
def post_publication_processing(event, cursor): """Process post-publication events coming out of the database.""" module_ident, ident_hash = event.module_ident, event.ident_hash celery_app = get_current_registry().celery_app # Check baking is not already queued. cursor.execute('SELECT result_id::t...
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Process post-publication events coming out of the database.
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python
valid
SBRG/ssbio
ssbio/protein/structure/homology/itasser/itasserprop.py
https://github.com/SBRG/ssbio/blob/e9449e64ffc1a1f5ad07e5849aa12a650095f8a2/ssbio/protein/structure/homology/itasser/itasserprop.py#L240-L286
def get_dict(self, only_attributes=None, exclude_attributes=None, df_format=False): """Summarize the I-TASSER run in a dictionary containing modeling results and top predictions from COACH Args: only_attributes (str, list): Attributes that should be returned. If not provided, all are return...
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Summarize the I-TASSER run in a dictionary containing modeling results and top predictions from COACH Args: only_attributes (str, list): Attributes that should be returned. If not provided, all are returned. exclude_attributes (str, list): Attributes that should be excluded. ...
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python
train
dossier/dossier.models
dossier/models/pairwise.py
https://github.com/dossier/dossier.models/blob/c9e282f690eab72963926329efe1600709e48b13/dossier/models/pairwise.py#L309-L339
def classify(self, feature_names, classifier, transformer, candidates, query_fc=None): '''Returns ``[probability]`` in correspondence with ``candidates``. Where each ``probability`` corresponds to the probability that the corresponding candidate is classified with a pos...
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Returns ``[probability]`` in correspondence with ``candidates``. Where each ``probability`` corresponds to the probability that the corresponding candidate is classified with a positive label given the training data. The list returned is in correspondence with the list of ...
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python
train
INM-6/hybridLFPy
examples/Hagen_et_al_2016_cercor/analysis_params.py
https://github.com/INM-6/hybridLFPy/blob/c38bdf38982c4624c2f70caeb50c40f1d5980abd/examples/Hagen_et_al_2016_cercor/analysis_params.py#L92-L96
def set_default_fig_style(self): '''default figure size''' plt.rcParams.update({ 'figure.figsize' : [self.frontierswidth/self.inchpercm, self.frontierswidth/self.inchpercm], })
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default figure size
[ "default", "figure", "size" ]
python
train
yaml/pyyaml
lib/yaml/__init__.py
https://github.com/yaml/pyyaml/blob/e471e86bf6dabdad45a1438c20a4a5c033eb9034/lib/yaml/__init__.py#L69-L78
def parse(stream, Loader=Loader): """ Parse a YAML stream and produce parsing events. """ loader = Loader(stream) try: while loader.check_event(): yield loader.get_event() finally: loader.dispose()
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Parse a YAML stream and produce parsing events.
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python
train
tensorflow/tensorboard
tensorboard/plugins/hparams/get_experiment.py
https://github.com/tensorflow/tensorboard/blob/8e5f497b48e40f2a774f85416b8a35ac0693c35e/tensorboard/plugins/hparams/get_experiment.py#L36-L52
def run(self): """Handles the request specified on construction. Returns: An Experiment object. """ experiment = self._context.experiment() if experiment is None: raise error.HParamsError( "Can't find an HParams-plugin experiment data in" " the log directory. Note t...
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Handles the request specified on construction. Returns: An Experiment object.
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python
train
sepandhaghighi/pycm
pycm/pycm_obj.py
https://github.com/sepandhaghighi/pycm/blob/cb03258afd6a821d10acba73c965aaac174bedcd/pycm/pycm_obj.py#L269-L315
def save_csv( self, name, address=True, class_param=None, class_name=None, matrix_save=True, normalize=False): """ Save ConfusionMatrix in CSV file. :param name: filename :type name : str :param ...
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Save ConfusionMatrix in CSV file. :param name: filename :type name : str :param address: flag for address return :type address : bool :param class_param : class parameters list for save, Example : ["TPR","TNR","AUC"] :type class_param : list :param class_name : c...
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python
train
meejah/txtorcon
txtorcon/onion.py
https://github.com/meejah/txtorcon/blob/14053b95adf0b4bd9dd9c317bece912a26578a93/txtorcon/onion.py#L1053-L1071
def _compute_permanent_id(private_key): """ Internal helper. Return an authenticated service's permanent ID given an RSA private key object. The permanent ID is the base32 encoding of the SHA1 hash of the first 10 bytes (80 bits) of the public key. """ pub = private_key.public_key() p =...
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Internal helper. Return an authenticated service's permanent ID given an RSA private key object. The permanent ID is the base32 encoding of the SHA1 hash of the first 10 bytes (80 bits) of the public key.
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python
train
jbm950/pygame_toolbox
pygame_toolbox/tilegame_tools/__init__.py
https://github.com/jbm950/pygame_toolbox/blob/3fe32145fc149e4dd0963c30a2b6a4dddd4fac0e/pygame_toolbox/tilegame_tools/__init__.py#L234-L260
def set_offset(self, offset, mid=None): """This method will allow the menu to be placed anywhere in the open window instead of just the upper left corner. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Inputs: offset - This is the x,y tuple of the...
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This method will allow the menu to be placed anywhere in the open window instead of just the upper left corner. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Inputs: offset - This is the x,y tuple of the position that you want to move the...
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python
train
secdev/scapy
scapy/layers/tls/crypto/cipher_block.py
https://github.com/secdev/scapy/blob/3ffe757c184017dd46464593a8f80f85abc1e79a/scapy/layers/tls/crypto/cipher_block.py#L77-L87
def encrypt(self, data): """ Encrypt the data. Also, update the cipher iv. This is needed for SSLv3 and TLS 1.0. For TLS 1.1/1.2, it is overwritten in TLS.post_build(). """ if False in six.itervalues(self.ready): raise CipherError(data) encryptor = self._ciphe...
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Encrypt the data. Also, update the cipher iv. This is needed for SSLv3 and TLS 1.0. For TLS 1.1/1.2, it is overwritten in TLS.post_build().
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python
train
pvlib/pvlib-python
pvlib/pvsystem.py
https://github.com/pvlib/pvlib-python/blob/2e844a595b820b43d1170269781fa66bd0ccc8a3/pvlib/pvsystem.py#L1539-L1645
def retrieve_sam(name=None, path=None): ''' Retrieve latest module and inverter info from a local file or the SAM website. This function will retrieve either: * CEC module database * Sandia Module database * CEC Inverter database * Anton Driesse Inverter database a...
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Retrieve latest module and inverter info from a local file or the SAM website. This function will retrieve either: * CEC module database * Sandia Module database * CEC Inverter database * Anton Driesse Inverter database and return it as a pandas DataFrame. Parameters ...
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python
train
titusjan/argos
argos/repo/rtiplugins/hdf5.py
https://github.com/titusjan/argos/blob/20d0a3cae26c36ea789a5d219c02ca7df21279dd/argos/repo/rtiplugins/hdf5.py#L306-L318
def unit(self): """ Returns the unit of the RTI by calling dataSetUnit on the underlying dataset """ unit = dataSetUnit(self._h5Dataset) fieldNames = self._h5Dataset.dtype.names # If the missing value attribute is a list with the same length as the number of fields, # re...
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Returns the unit of the RTI by calling dataSetUnit on the underlying dataset
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python
train
elastic/elasticsearch-dsl-py
elasticsearch_dsl/search.py
https://github.com/elastic/elasticsearch-dsl-py/blob/874b52472fc47b601de0e5fa0e4300e21aff0085/elasticsearch_dsl/search.py#L474-L517
def source(self, fields=None, **kwargs): """ Selectively control how the _source field is returned. :arg fields: wildcard string, array of wildcards, or dictionary of includes and excludes If ``fields`` is None, the entire document will be returned for each hit. If fields is a...
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Selectively control how the _source field is returned. :arg fields: wildcard string, array of wildcards, or dictionary of includes and excludes If ``fields`` is None, the entire document will be returned for each hit. If fields is a dictionary with keys of 'include' and/or 'exclude' t...
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python
train
cathalgarvey/deadlock
deadlock/core.py
https://github.com/cathalgarvey/deadlock/blob/30099b476ff767611ce617150a0c574fc03fdf79/deadlock/core.py#L136-L166
def main_encrypt(A): "Encrypt to recipient list using primary key OR prompted key. Recipients may be IDs or petnames." profile = get_profile(A) localKeys = profile.get('local keys', []) if not localKeys: localKeys = [make_lock_securely(warn_only = A.ignore_entropy)] else: localKeys =...
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Encrypt to recipient list using primary key OR prompted key. Recipients may be IDs or petnames.
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python
train
yinkaisheng/Python-UIAutomation-for-Windows
uiautomation/uiautomation.py
https://github.com/yinkaisheng/Python-UIAutomation-for-Windows/blob/2cc91060982cc8b777152e698d677cc2989bf263/uiautomation/uiautomation.py#L6416-L6464
def Select(self, itemName: str = '', condition: Callable = None, waitTime: float = OPERATION_WAIT_TIME) -> bool: """ Show combobox's popup menu and select a item by name. itemName: str. condition: Callable function(comboBoxItemName: str)->bool, if condition is valid, ignore itemName. ...
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Show combobox's popup menu and select a item by name. itemName: str. condition: Callable function(comboBoxItemName: str)->bool, if condition is valid, ignore itemName. waitTime: float. Some comboboxs doesn't support SelectionPattern, here is a workaround. This method tries to and...
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python
valid
openstack/horizon
horizon/tables/actions.py
https://github.com/openstack/horizon/blob/5601ea9477323e599d9b766fcac1f8be742935b2/horizon/tables/actions.py#L388-L413
def get_link_url(self, datum=None): """Returns the final URL based on the value of ``url``. If ``url`` is callable it will call the function. If not, it will then try to call ``reverse`` on ``url``. Failing that, it will simply return the value of ``url`` as-is. When called for...
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Returns the final URL based on the value of ``url``. If ``url`` is callable it will call the function. If not, it will then try to call ``reverse`` on ``url``. Failing that, it will simply return the value of ``url`` as-is. When called for a row action, the current row data object will...
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python
train
stephenmcd/gunicorn-console
gunicorn_console.py
https://github.com/stephenmcd/gunicorn-console/blob/f5c9b9a69ea1f2ca00aac3565cb99491684d868a/gunicorn_console.py#L265-L295
def main(): """ Main entry point for gunicorn_console. """ # Set up curses. stdscr = curses.initscr() curses.start_color() curses.init_pair(1, foreground_colour, background_colour) curses.noecho() stdscr.keypad(True) stdscr.nodelay(True) try: curses.curs_set(False) ...
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Main entry point for gunicorn_console.
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python
train
DataBiosphere/toil
src/toil/cwl/cwltoil.py
https://github.com/DataBiosphere/toil/blob/a8252277ff814e7bee0971139c2344f88e44b644/src/toil/cwl/cwltoil.py#L1031-L1037
def cleanTempDirs(job): """Remove temporarly created directories.""" if job is CWLJob and job._succeeded: # Only CWLJobs have this attribute. for tempDir in job.openTempDirs: if os.path.exists(tempDir): shutil.rmtree(tempDir) job.openTempDirs = []
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Remove temporarly created directories.
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python
train
halcy/Mastodon.py
mastodon/Mastodon.py
https://github.com/halcy/Mastodon.py/blob/35c43562dd3d34d6ebf7a0f757c09e8fcccc957c/mastodon/Mastodon.py#L635-L642
def timeline_local(self, max_id=None, min_id=None, since_id=None, limit=None): """ Fetches the local / instance-wide timeline, not including replies. Returns a list of `toot dicts`_. """ return self.timeline('local', max_id=max_id, min_id=min_id, sin...
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Fetches the local / instance-wide timeline, not including replies. Returns a list of `toot dicts`_.
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python
train
QualiSystems/vCenterShell
package/cloudshell/cp/vcenter/common/vcenter/deployment_details_factory.py
https://github.com/QualiSystems/vCenterShell/blob/e2e24cd938a92a68f4a8e6a860810d3ef72aae6d/package/cloudshell/cp/vcenter/common/vcenter/deployment_details_factory.py#L6-L25
def create_deployment_details(vcenter_resource_model, vm_cluster, vm_storage, vm_resource_pool, vm_location): """ :type vcenter_resource_model: VMwarevCenterResourceModel :type vm_cluster: str :type vm_storage: str :type vm_resource_pool: str :type vm_location: str ...
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:type vcenter_resource_model: VMwarevCenterResourceModel :type vm_cluster: str :type vm_storage: str :type vm_resource_pool: str :type vm_location: str :rtype: DeploymentDetails
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python
train
tensorflow/tensor2tensor
tensor2tensor/models/research/vqa_self_attention.py
https://github.com/tensorflow/tensor2tensor/blob/272500b6efe353aeb638d2745ed56e519462ca31/tensor2tensor/models/research/vqa_self_attention.py#L654-L678
def iterative_encoder_decoder(encoder_input, encoder_self_attention_bias, encoder_decoder_attention_bias, query, hparams): """Iterative encoder decoder.""" for _ in range(hparams.num_rec_steps): ...
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Iterative encoder decoder.
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python
train
buzzfeed/caliendo
caliendo/expected_value.py
https://github.com/buzzfeed/caliendo/blob/1628a10f7782ad67c0422b5cbc9bf4979ac40abc/caliendo/expected_value.py#L131-L142
def save( self ): """ Save method for the ExpectedValue of a call. """ packets = self.__enumerate_packets() delete_expected_value(self.call_hash) for packet in packets: packet['call_hash'] = self.call_hash insert_expected_value(packet) re...
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Save method for the ExpectedValue of a call.
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python
train
matthewdeanmartin/jiggle_version
sample_projects/ver_in_weird_file/setup_helpers.py
https://github.com/matthewdeanmartin/jiggle_version/blob/963656a0a47b7162780a5f6c8f4b8bbbebc148f5/sample_projects/ver_in_weird_file/setup_helpers.py#L125-L134
def long_description(*filenames): """Provide a long description.""" res = [''] for filename in filenames: with open(filename) as fp: for line in fp: res.append(' ' + line) res.append('') res.append('\n') return EMPTYSTRING.join(res)
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Provide a long description.
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python
train
openid/python-openid
openid/consumer/consumer.py
https://github.com/openid/python-openid/blob/f7e13536f0d1828d3cef5ae7a7b55cabadff37fc/openid/consumer/consumer.py#L989-L1035
def _verifyDiscoverySingle(self, endpoint, to_match): """Verify that the given endpoint matches the information extracted from the OpenID assertion, and raise an exception if there is a mismatch. @type endpoint: openid.consumer.discover.OpenIDServiceEndpoint @type to_match: open...
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Verify that the given endpoint matches the information extracted from the OpenID assertion, and raise an exception if there is a mismatch. @type endpoint: openid.consumer.discover.OpenIDServiceEndpoint @type to_match: openid.consumer.discover.OpenIDServiceEndpoint @rtype: NoneT...
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python
train
google/grr
grr/core/grr_response_core/lib/util/random.py
https://github.com/google/grr/blob/5cef4e8e2f0d5df43ea4877e9c798e0bf60bfe74/grr/core/grr_response_core/lib/util/random.py#L29-L38
def UInt32(): """Returns a pseudo-random 32-bit unsigned integer.""" with _mutex: try: return _random_buffer.pop() except IndexError: data = os.urandom(struct.calcsize("=L") * _random_buffer_size) _random_buffer.extend( struct.unpack("=" + "L" * _random_buffer_size, data)) ...
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Returns a pseudo-random 32-bit unsigned integer.
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python
train
lpantano/seqcluster
seqcluster/seqbuster/snps.py
https://github.com/lpantano/seqcluster/blob/774e23add8cd4fdc83d626cea3bd1f458e7d060d/seqcluster/seqbuster/snps.py#L80-L92
def print_vcf(data): """Print vcf line following rules.""" id_name = "." qual = "." chrom = data['chrom'] pos = data['pre_pos'] nt_ref = data['nt'][1] nt_snp = data['nt'][0] flt = "PASS" info = "ID=%s" % data['mature'] frmt = "GT:NR:NS" gntp = "%s:%s:%s" % (_genotype(data), d...
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Print vcf line following rules.
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python
train
imbolc/aiohttp-login
aiohttp_login/sql.py
https://github.com/imbolc/aiohttp-login/blob/43b30d8630ca5c14d4b75c398eb5f6a27ddf0a52/aiohttp_login/sql.py#L60-L71
def update_sql(table, filter, updates): ''' >>> update_sql('tbl', {'foo': 'a', 'bar': 1}, {'bar': 2, 'baz': 'b'}) ('UPDATE tbl SET bar=$1, baz=$2 WHERE bar=$3 AND foo=$4', [2, 'b', 1, 'a']) ''' where_keys, where_vals = _split_dict(filter) up_keys, up_vals = _split_dict(updates) changes = _pa...
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>>> update_sql('tbl', {'foo': 'a', 'bar': 1}, {'bar': 2, 'baz': 'b'}) ('UPDATE tbl SET bar=$1, baz=$2 WHERE bar=$3 AND foo=$4', [2, 'b', 1, 'a'])
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python
train
yyuu/botornado
boto/ec2/keypair.py
https://github.com/yyuu/botornado/blob/fffb056f5ff2324d1d5c1304014cfb1d899f602e/boto/ec2/keypair.py#L60-L89
def save(self, directory_path): """ Save the material (the unencrypted PEM encoded RSA private key) of a newly created KeyPair to a local file. :type directory_path: string :param directory_path: The fully qualified path to the directory in...
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Save the material (the unencrypted PEM encoded RSA private key) of a newly created KeyPair to a local file. :type directory_path: string :param directory_path: The fully qualified path to the directory in which the keypair will be saved. The ...
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python
train
rueckstiess/mtools
mtools/util/logevent.py
https://github.com/rueckstiess/mtools/blob/a6a22910c3569c0c8a3908660ca218a4557e4249/mtools/util/logevent.py#L844-L940
def _parse_document(self): """Parse system.profile doc, copy all values to member variables.""" self._reset() doc = self._profile_doc self._split_tokens_calculated = True self._split_tokens = None self._duration_calculated = True self._duration = doc[u'millis']...
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Parse system.profile doc, copy all values to member variables.
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python
train
rocky/python3-trepan
trepan/lib/sighandler.py
https://github.com/rocky/python3-trepan/blob/14e91bc0acce090d67be145b1ac040cab92ac5f3/trepan/lib/sighandler.py#L428-L435
def handle_print(self, signame, set_print): """Set whether we print or not when this signal is caught.""" if set_print: self.sigs[signame].print_method = self.dbgr.intf[-1].msg else: self.sigs[signame].print_method = None pass return set_print
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Set whether we print or not when this signal is caught.
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python
test
gem/oq-engine
openquake/hazardlib/gsim/megawati_2003.py
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/gsim/megawati_2003.py#L94-L98
def _get_distance_scaling(self, coe, rhypo): """ Returns the distance scaling term """ return coe["a3"] * np.log(rhypo) + coe["a4"] * rhypo
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Returns the distance scaling term
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python
train
apple/turicreate
deps/src/boost_1_68_0/tools/build/src/build/virtual_target.py
https://github.com/apple/turicreate/blob/74514c3f99e25b46f22c6e02977fe3da69221c2e/deps/src/boost_1_68_0/tools/build/src/build/virtual_target.py#L437-L444
def root (self, set = None): """ Sets/gets the 'root' flag. Target is root is it directly correspods to some variant of a main target. """ assert isinstance(set, (int, bool, type(None))) if set: self.root_ = True return self.root_
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Sets/gets the 'root' flag. Target is root is it directly correspods to some variant of a main target.
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python
train
ibm-watson-iot/iot-python
tmp/src/things/things.py
https://github.com/ibm-watson-iot/iot-python/blob/195f05adce3fba4ec997017e41e02ebd85c0c4cc/tmp/src/things/things.py#L751-L768
def createEvent(self, physicalInterfaceId, eventTypeId, eventId): """ Create an event mapping for a physical interface. Parameters: physicalInterfaceId (string) - value returned by the platform when creating the physical interface eventTypeId (string) - value returned by the ...
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Create an event mapping for a physical interface. Parameters: physicalInterfaceId (string) - value returned by the platform when creating the physical interface eventTypeId (string) - value returned by the platform when creating the event type eventId (string) - matches the event i...
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python
test
ClimateImpactLab/DataFS
datafs/datafs.py
https://github.com/ClimateImpactLab/DataFS/blob/0d32c2b4e18d300a11b748a552f6adbc3dd8f59d/datafs/datafs.py#L130-L167
def configure(ctx, helper, edit): ''' Update configuration ''' ctx.obj.config = ConfigFile(ctx.obj.config_file) if edit: ctx.obj.config.edit_config_file() return if os.path.isfile(ctx.obj.config.config_file): ctx.obj.config.read_config() if ctx.obj.profile is None...
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Update configuration
[ "Update", "configuration" ]
python
train
saltstack/salt
salt/states/file.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/states/file.py#L1131-L1189
def _get_template_texts(source_list=None, template='jinja', defaults=None, context=None, **kwargs): ''' Iterate a list of sources and process them as templates. Returns a list of 'chunks' containing the rendered ...
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Iterate a list of sources and process them as templates. Returns a list of 'chunks' containing the rendered templates.
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python
train
bwhite/hadoopy
hadoopy/thirdparty/pyinstaller/PyInstaller/hooks/hookutils.py
https://github.com/bwhite/hadoopy/blob/ff39b4e6d4e6efaf1f571cf0f2c0e0d7ab28c2d6/hadoopy/thirdparty/pyinstaller/PyInstaller/hooks/hookutils.py#L115-L124
def qt4_plugins_binaries(plugin_type): """Return list of dynamic libraries formated for mod.binaries.""" binaries = [] pdir = qt4_plugins_dir() files = misc.dlls_in_dir(os.path.join(pdir, plugin_type)) for f in files: binaries.append(( os.path.join('qt4_plugins', plugin_type, os....
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Return list of dynamic libraries formated for mod.binaries.
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python
train
datadotworld/data.world-py
datadotworld/client/api.py
https://github.com/datadotworld/data.world-py/blob/ffaeb115f358731ab0b805b0c43b7ff2e3cf0a77/datadotworld/client/api.py#L282-L321
def add_files_via_url(self, dataset_key, files={}): """Add or update dataset files linked to source URLs :param dataset_key: Dataset identifier, in the form of owner/id :type dataset_key: str :param files: Dict containing the name of files and metadata Uses file name as a di...
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Add or update dataset files linked to source URLs :param dataset_key: Dataset identifier, in the form of owner/id :type dataset_key: str :param files: Dict containing the name of files and metadata Uses file name as a dict containing File description, labels and source U...
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python
train
quantopian/pgcontents
pgcontents/pgmanager.py
https://github.com/quantopian/pgcontents/blob/ed36268b7917332d16868208e1e565742a8753e1/pgcontents/pgmanager.py#L264-L280
def _file_model_from_db(self, record, content, format): """ Build a file model from database record. """ # TODO: Most of this is shared with _notebook_model_from_db. path = to_api_path(record['parent_name'] + record['name']) model = base_model(path) model['type'] ...
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Build a file model from database record.
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python
test
square/pylink
pylink/threads.py
https://github.com/square/pylink/blob/81dda0a191d923a8b2627c52cb778aba24d279d7/pylink/threads.py#L41-L56
def run(self): """Runs the thread. Args: self (ThreadReturn): the ``ThreadReturn`` instance Returns: ``None`` """ target = getattr(self, '_Thread__target', getattr(self, '_target', None)) args = getattr(self, '_Thread__args', getattr(self, '_args', N...
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Runs the thread. Args: self (ThreadReturn): the ``ThreadReturn`` instance Returns: ``None``
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python
train
pymacaron/pymacaron
pymacaron/utils.py
https://github.com/pymacaron/pymacaron/blob/af244f203f8216108b39d374d46bf8e1813f13d5/pymacaron/utils.py#L17-L41
def is_ec2_instance(): """Try fetching instance metadata at 'curl http://169.254.169.254/latest/meta-data/' to see if host is on an ec2 instance""" # Note: this code assumes that docker containers running on ec2 instances # inherit instances metadata, which they do as of 2016-08-25 global IS_EC2_I...
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Try fetching instance metadata at 'curl http://169.254.169.254/latest/meta-data/' to see if host is on an ec2 instance
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python
train
maxzheng/bumper-lib
bumper/cars.py
https://github.com/maxzheng/bumper-lib/blob/32a9dec5448673825bb2d7d92fa68882b597f794/bumper/cars.py#L252-L257
def as_requirement(self): """ Convert back to a :class:`pkg_resources.Requirement` instance """ if self.new_version: return pkg_resources.Requirement.parse(self.name + ''.join(self.new_version)) else: return pkg_resources.Requirement.parse(self.name)
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Convert back to a :class:`pkg_resources.Requirement` instance
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python
valid
jobovy/galpy
galpy/potential/KuzminKutuzovStaeckelPotential.py
https://github.com/jobovy/galpy/blob/9c5b9fe65d58835624dffe432be282060918ee08/galpy/potential/KuzminKutuzovStaeckelPotential.py#L258-L274
def _l2deriv(self,l,n): """ NAME: _l2deriv PURPOSE: evaluate the second derivative w.r.t. lambda for this potential INPUT: l - prolate spheroidal coordinate lambda n - prolate spheroidal coordinate nu OUTPUT: second deri...
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NAME: _l2deriv PURPOSE: evaluate the second derivative w.r.t. lambda for this potential INPUT: l - prolate spheroidal coordinate lambda n - prolate spheroidal coordinate nu OUTPUT: second derivative w.r.t. lambda HISTORY: ...
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python
train
datacratic/pymldb
pymldb/__init__.py
https://github.com/datacratic/pymldb/blob/e41f3c37138e9fd4a82ef3db685899cdafa4125e/pymldb/__init__.py#L131-L165
def post_and_track(self, url, payload, refresh_rate_sec=1): """ Post and track progress, displaying progress bars. May display the wrong progress if 2 things post/put on the same procedure name at the same time. """ if not url.startswith('/v1/procedures'): ra...
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Post and track progress, displaying progress bars. May display the wrong progress if 2 things post/put on the same procedure name at the same time.
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python
train
rochacbruno/dynaconf
dynaconf/loaders/toml_loader.py
https://github.com/rochacbruno/dynaconf/blob/5a7cc8f8252251cbdf4f4112965801f9dfe2831d/dynaconf/loaders/toml_loader.py#L15-L38
def load(obj, env=None, silent=True, key=None, filename=None): """ Reads and loads in to "obj" a single key or all keys from source file. :param obj: the settings instance :param env: settings current env default='development' :param silent: if errors should raise :param key: if defined load a ...
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Reads and loads in to "obj" a single key or all keys from source file. :param obj: the settings instance :param env: settings current env default='development' :param silent: if errors should raise :param key: if defined load a single key, else load all in env :param filename: Optional custom filen...
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python
train
maxzheng/bumper-lib
bumper/utils.py
https://github.com/maxzheng/bumper-lib/blob/32a9dec5448673825bb2d7d92fa68882b597f794/bumper/utils.py#L60-L63
def all_package_versions(package): """ All versions for package """ info = PyPI.package_info(package) return info and sorted(info['releases'].keys(), key=lambda x: x.split(), reverse=True) or []
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All versions for package
[ "All", "versions", "for", "package" ]
python
valid
openstack/networking-cisco
networking_cisco/apps/saf/server/services/firewall/native/fabric_setup_base.py
https://github.com/openstack/networking-cisco/blob/aa58a30aec25b86f9aa5952b0863045975debfa9/networking_cisco/apps/saf/server/services/firewall/native/fabric_setup_base.py#L890-L901
def _create_service_nwk(self, tenant_id, tenant_name, direc): """Function to create the service in network in DCNM. """ net_dict = self.retrieve_dcnm_net_info(tenant_id, direc) net = utils.Dict2Obj(net_dict) subnet_dict = self.retrieve_dcnm_subnet_info(tenant_id, direc) subnet = ...
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Function to create the service in network in DCNM.
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python
train
vmlaker/mpipe
src/UnorderedWorker.py
https://github.com/vmlaker/mpipe/blob/5a1804cf64271931f0cd3e4fff3e2b38291212dd/src/UnorderedWorker.py#L17-L34
def init2( self, input_tube, # Read task from the input tube. output_tubes, # Send result on all the output tubes. num_workers, # Total number of workers in the stage. disable_result, # Whether to override any result with None. do_stop_task, # Whether to ...
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Create *num_workers* worker objects with *input_tube* and an iterable of *output_tubes*. The worker reads a task from *input_tube* and writes the result to *output_tubes*.
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python
train
chrislit/abydos
abydos/phonetic/_beider_morse.py
https://github.com/chrislit/abydos/blob/165466b3ff6afd8024a4c8660421b0c4e7773db9/abydos/phonetic/_beider_morse.py#L590-L611
def _phonetic_numbers(self, phonetic): """Prepare & join phonetic numbers. Split phonetic value on '-', run through _pnums_with_leading_space, and join with ' ' Parameters ---------- phonetic : str A Beider-Morse phonetic encoding Returns --...
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Prepare & join phonetic numbers. Split phonetic value on '-', run through _pnums_with_leading_space, and join with ' ' Parameters ---------- phonetic : str A Beider-Morse phonetic encoding Returns ------- str A Beider-Morse phone...
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python
valid
pyviz/holoviews
holoviews/plotting/plotly/plot.py
https://github.com/pyviz/holoviews/blob/ae0dd2f3de448b0ca5e9065aabd6ef8d84c7e655/holoviews/plotting/plotly/plot.py#L33-L39
def _trigger_refresh(self, key): "Triggers update to a plot on a refresh event" if self.top_level: self.update(key) else: self.current_key = None self.current_frame = None
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Triggers update to a plot on a refresh event
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python
train
great-expectations/great_expectations
great_expectations/data_asset/file_data_asset.py
https://github.com/great-expectations/great_expectations/blob/08385c40529d4f14a1c46916788aecc47f33ee9d/great_expectations/data_asset/file_data_asset.py#L587-L643
def expect_file_to_be_valid_json(self, schema=None, result_format=None, include_config=False, catch_exceptions=None, meta=None): """ schema : string optional JSON schema file on which JSON data file is validated again...
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schema : string optional JSON schema file on which JSON data file is validated against result_format (str or None): Which output mode to use: `BOOLEAN_ONLY`, `BASIC`, `COMPLETE`, or `SUMMARY`. For more detail, see :ref:`result_format <result_format>`. include_config...
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python
train
mokelly/wabbit_wappa
wabbit_wappa/__init__.py
https://github.com/mokelly/wabbit_wappa/blob/dfe5bf6d6036079e473c4148335cd6f339d0299b/wabbit_wappa/__init__.py#L263-L274
def _get_response(self, parse_result=True): """If 'parse_result' is False, ignore the received output and return None.""" # expect_exact is faster than just exact, and fine for our purpose # (http://pexpect.readthedocs.org/en/latest/api/pexpect.html#pexpect.spawn.expect_exact) # searchwi...
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If 'parse_result' is False, ignore the received output and return None.
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python
train
LonamiWebs/Telethon
telethon/client/chats.py
https://github.com/LonamiWebs/Telethon/blob/1ead9757d366b58c1e0567cddb0196e20f1a445f/telethon/client/chats.py#L277-L331
def iter_participants( self, entity, limit=None, *, search='', filter=None, aggressive=False ): """ Iterator over the participants belonging to the specified chat. Args: entity (`entity`): The entity from which to retrieve the participants...
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Iterator over the participants belonging to the specified chat. Args: entity (`entity`): The entity from which to retrieve the participants list. limit (`int`): Limits amount of participants fetched. search (`str`, optional): ...
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python
train
Rackspace-DOT/flask_keystone
flask_keystone/__init__.py
https://github.com/Rackspace-DOT/flask_keystone/blob/6f6d630e9e66a3beca6607b0b786510ec2a79747/flask_keystone/__init__.py#L205-L239
def _make_user_model(self): """ Dynamically generate a User class for use with FlaskKeystone. :returns: a generated User class, inherited from :class:`flask_keystone.UserBase`. :rtype: class This User model is intended to work somewhat similarly to the User ...
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Dynamically generate a User class for use with FlaskKeystone. :returns: a generated User class, inherited from :class:`flask_keystone.UserBase`. :rtype: class This User model is intended to work somewhat similarly to the User class that is created for Flask-Login, how...
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python
train
rvswift/EB
EB/builder/utilities/ensemble_storage.py
https://github.com/rvswift/EB/blob/341880b79faf8147dc9fa6e90438531cd09fabcc/EB/builder/utilities/ensemble_storage.py#L17-L35
def set_prop(self, prop, value, ef=None): """ set attributes values :param prop: :param value: :param ef: :return: """ if ef: # prop should be restricted to n_decoys, an int, the no. of decoys corresponding to a given FPF. # value i...
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set attributes values :param prop: :param value: :param ef: :return:
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python
train
SwissDataScienceCenter/renku-python
renku/cli/doctor.py
https://github.com/SwissDataScienceCenter/renku-python/blob/691644d695b055a01e0ca22b2620e55bbd928c0d/renku/cli/doctor.py#L36-L49
def doctor(ctx, client): """Check your system and repository for potential problems.""" click.secho('\n'.join(textwrap.wrap(DOCTOR_INFO)) + '\n', bold=True) from . import _checks is_ok = True for attr in _checks.__all__: is_ok &= getattr(_checks, attr)(client) if is_ok: click....
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Check your system and repository for potential problems.
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python
train
firstprayer/monsql
monsql/query.py
https://github.com/firstprayer/monsql/blob/6285c15b574c8664046eae2edfeb548c7b173efd/monsql/query.py#L85-L193
def to_sql(self): """ This function build a sql condition string (those used in the 'WHERE' clause) based on given condition Supported match pattern: {a: 1} -> a == 1 {a: {$gt: 1}} -> a > 1 {a: {$gte: 1}} ...
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This function build a sql condition string (those used in the 'WHERE' clause) based on given condition Supported match pattern: {a: 1} -> a == 1 {a: {$gt: 1}} -> a > 1 {a: {$gte: 1}} -> a >= 1 {a: {$lt: 1}} ...
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python
train
pandas-dev/pandas
pandas/core/algorithms.py
https://github.com/pandas-dev/pandas/blob/9feb3ad92cc0397a04b665803a49299ee7aa1037/pandas/core/algorithms.py#L966-L1043
def quantile(x, q, interpolation_method='fraction'): """ Compute sample quantile or quantiles of the input array. For example, q=0.5 computes the median. The `interpolation_method` parameter supports three values, namely `fraction` (default), `lower` and `higher`. Interpolation is done only, if...
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Compute sample quantile or quantiles of the input array. For example, q=0.5 computes the median. The `interpolation_method` parameter supports three values, namely `fraction` (default), `lower` and `higher`. Interpolation is done only, if the desired quantile lies between two data points `i` and `j`. F...
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python
train
UpCloudLtd/upcloud-python-api
upcloud_api/cloud_manager/firewall_mixin.py
https://github.com/UpCloudLtd/upcloud-python-api/blob/954b0ad7c4b932b2be31a95d88975f6b0eeac8ed/upcloud_api/cloud_manager/firewall_mixin.py#L42-L55
def create_firewall_rule(self, server, firewall_rule_body): """ Create a new firewall rule for a given server uuid. The rule can begiven as a dict or with FirewallRule.prepare_post_body(). Returns a FirewallRule object. """ server_uuid, server_instance = uuid_and_instanc...
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Create a new firewall rule for a given server uuid. The rule can begiven as a dict or with FirewallRule.prepare_post_body(). Returns a FirewallRule object.
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python
train
pycontribs/pyrax
pyrax/queueing.py
https://github.com/pycontribs/pyrax/blob/9ddfd5064b3a292d7337906f3b2d5dce95b50b99/pyrax/queueing.py#L504-L516
def set_metadata(self, queue, metadata, clear=False): """ Accepts a dictionary and adds that to the specified queue's metadata. If the 'clear' argument is passed as True, any existing metadata is replaced with the new metadata. """ uri = "/%s/%s/metadata" % (self.uri_base...
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Accepts a dictionary and adds that to the specified queue's metadata. If the 'clear' argument is passed as True, any existing metadata is replaced with the new metadata.
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python
train
fastai/fastai
fastai/layers.py
https://github.com/fastai/fastai/blob/9fb84a5cdefe5a766cdb792b8f5d8971737b7e67/fastai/layers.py#L281-L283
def MSELossFlat(*args, axis:int=-1, floatify:bool=True, **kwargs): "Same as `nn.MSELoss`, but flattens input and target." return FlattenedLoss(nn.MSELoss, *args, axis=axis, floatify=floatify, is_2d=False, **kwargs)
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Same as `nn.MSELoss`, but flattens input and target.
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python
train
google/grumpy
third_party/stdlib/_abcoll.py
https://github.com/google/grumpy/blob/3ec87959189cfcdeae82eb68a47648ac25ceb10b/third_party/stdlib/_abcoll.py#L312-L320
def pop(self): """Return the popped value. Raise KeyError if empty.""" it = iter(self) try: value = next(it) except StopIteration: raise KeyError self.discard(value) return value
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Return the popped value. Raise KeyError if empty.
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python
valid
pycontribs/pyrax
pyrax/resource.py
https://github.com/pycontribs/pyrax/blob/9ddfd5064b3a292d7337906f3b2d5dce95b50b99/pyrax/resource.py#L66-L76
def _add_details(self, info): """ Takes the dict returned by the API call and sets the corresponding attributes on the object. """ for (key, val) in six.iteritems(info): if isinstance(key, six.text_type) and six.PY2: key = key.encode(pyrax.get_encoding...
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Takes the dict returned by the API call and sets the corresponding attributes on the object.
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python
train
ekzhu/datasketch
datasketch/minhash.py
https://github.com/ekzhu/datasketch/blob/b3e4129987890a2beb04f2c0b6dc618ae35f2e14/datasketch/minhash.py#L137-L154
def jaccard(self, other): '''Estimate the `Jaccard similarity`_ (resemblance) between the sets represented by this MinHash and the other. Args: other (datasketch.MinHash): The other MinHash. Returns: float: The Jaccard similarity, which is between 0.0 and 1.0. ...
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Estimate the `Jaccard similarity`_ (resemblance) between the sets represented by this MinHash and the other. Args: other (datasketch.MinHash): The other MinHash. Returns: float: The Jaccard similarity, which is between 0.0 and 1.0.
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python
test
GoogleCloudPlatform/appengine-mapreduce
python/demo/main.py
https://github.com/GoogleCloudPlatform/appengine-mapreduce/blob/2045eb3605b6ecb40c83d11dd5442a89fe5c5dd6/python/demo/main.py#L181-L185
def split_into_sentences(s): """Split text into list of sentences.""" s = re.sub(r"\s+", " ", s) s = re.sub(r"[\\.\\?\\!]", "\n", s) return s.split("\n")
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Split text into list of sentences.
[ "Split", "text", "into", "list", "of", "sentences", "." ]
python
train
saltstack/salt
salt/utils/dns.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/utils/dns.py#L546-L654
def lookup( name, rdtype, method=None, servers=None, timeout=None, walk=False, walk_tld=False, secure=None ): ''' Lookup DNS records and return their data :param name: name to lookup :param rdtype: DNS record type :param method: gai (getaddrinfo()), dnspython, dig, d...
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Lookup DNS records and return their data :param name: name to lookup :param rdtype: DNS record type :param method: gai (getaddrinfo()), dnspython, dig, drill, host, nslookup or auto (default) :param servers: (list of) server(s) to try in-order :param timeout: query timeout or a valiant approximatio...
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python
train
wandb/client
wandb/vendor/prompt_toolkit/buffer.py
https://github.com/wandb/client/blob/7d08954ed5674fee223cd85ed0d8518fe47266b2/wandb/vendor/prompt_toolkit/buffer.py#L655-L666
def join_next_line(self, separator=' '): """ Join the next line to the current one by deleting the line ending after the current line. """ if not self.document.on_last_line: self.cursor_position += self.document.get_end_of_line_position() self.delete() ...
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Join the next line to the current one by deleting the line ending after the current line.
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python
train
klahnakoski/pyLibrary
jx_python/jx.py
https://github.com/klahnakoski/pyLibrary/blob/fa2dcbc48fda8d26999baef400e9a98149e0b982/jx_python/jx.py#L914-L941
def wrap_function(func): """ RETURN A THREE-PARAMETER WINDOW FUNCTION TO MATCH """ if is_text(func): return compile_expression(func) numarg = func.__code__.co_argcount if numarg == 0: def temp(row, rownum, rows): return func() return temp elif numarg ==...
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RETURN A THREE-PARAMETER WINDOW FUNCTION TO MATCH
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python
train
bcbio/bcbio-nextgen
bcbio/pipeline/config_utils.py
https://github.com/bcbio/bcbio-nextgen/blob/6a9348c0054ccd5baffd22f1bb7d0422f6978b20/bcbio/pipeline/config_utils.py#L221-L233
def _get_program_cmd(name, pconfig, config, default): """Retrieve commandline of a program. """ if pconfig is None: return name elif isinstance(pconfig, six.string_types): return pconfig elif "cmd" in pconfig: return pconfig["cmd"] elif default is not None: return...
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Retrieve commandline of a program.
[ "Retrieve", "commandline", "of", "a", "program", "." ]
python
train
EasyPost/pystalk
pystalk/client.py
https://github.com/EasyPost/pystalk/blob/96759ad1fda264b9897ee5346eef7926892a3a4c/pystalk/client.py#L572-L587
def pause_tube(self, tube, delay=3600): """Pause a tube for some number of seconds, preventing it from issuing jobs. :param delay: Time to pause for, in seconds :type delay: int There is no way to permanently pause a tube; passing 0 for delay actually un-pauses the tube. .. se...
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Pause a tube for some number of seconds, preventing it from issuing jobs. :param delay: Time to pause for, in seconds :type delay: int There is no way to permanently pause a tube; passing 0 for delay actually un-pauses the tube. .. seealso:: :func:`unpause_tube()`
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python
train
ktbyers/netmiko
netmiko/base_connection.py
https://github.com/ktbyers/netmiko/blob/54e6116c0b4664de2123081937e0a9a27bdfdfea/netmiko/base_connection.py#L1147-L1158
def strip_prompt(self, a_string): """Strip the trailing router prompt from the output. :param a_string: Returned string from device :type a_string: str """ response_list = a_string.split(self.RESPONSE_RETURN) last_line = response_list[-1] if self.base_prompt in l...
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Strip the trailing router prompt from the output. :param a_string: Returned string from device :type a_string: str
[ "Strip", "the", "trailing", "router", "prompt", "from", "the", "output", "." ]
python
train
SiLab-Bonn/basil
basil/HL/FEI4AdapterCard.py
https://github.com/SiLab-Bonn/basil/blob/99052482d9334dd1f5598eb2d2fb4d5399a32291/basil/HL/FEI4AdapterCard.py#L336-L366
def read_eeprom_calibration(self, temperature=False): # use default values for temperature, EEPROM values are usually not calibrated and random '''Reading EEPROM calibration for power regulators and temperature ''' header = self.get_format() if header == self.HEADER_V1: data...
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Reading EEPROM calibration for power regulators and temperature
[ "Reading", "EEPROM", "calibration", "for", "power", "regulators", "and", "temperature" ]
python
train
danpaquin/coinbasepro-python
cbpro/authenticated_client.py
https://github.com/danpaquin/coinbasepro-python/blob/0a9dbd86a25ae266d0e0eefeb112368c284b7dcc/cbpro/authenticated_client.py#L91-L129
def get_account_history(self, account_id, **kwargs): """ List account activity. Account activity either increases or decreases your account balance. Entry type indicates the reason for the account change. * transfer: Funds moved to/from Coinbase to cbpro * match: Funds moved as ...
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List account activity. Account activity either increases or decreases your account balance. Entry type indicates the reason for the account change. * transfer: Funds moved to/from Coinbase to cbpro * match: Funds moved as a result of a trade * fee: Fee as a result of a trade...
[ "List", "account", "activity", ".", "Account", "activity", "either", "increases", "or", "decreases", "your", "account", "balance", "." ]
python
train
AndrewAnnex/SpiceyPy
spiceypy/spiceypy.py
https://github.com/AndrewAnnex/SpiceyPy/blob/fc20a9b9de68b58eed5b332f0c051fb343a6e335/spiceypy/spiceypy.py#L5089-L5118
def eul2m(angle3, angle2, angle1, axis3, axis2, axis1): """ Construct a rotation matrix from a set of Euler angles. http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/eul2m_c.html :param angle3: Rotation angle about third rotation axis (radians). :type angle3: float :param angle2: Rotatio...
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Construct a rotation matrix from a set of Euler angles. http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/eul2m_c.html :param angle3: Rotation angle about third rotation axis (radians). :type angle3: float :param angle2: Rotation angle about second rotation axis (radians). :type angle2: floa...
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python
train
LPgenerator/django-mmc
mmc/mixins.py
https://github.com/LPgenerator/django-mmc/blob/3b6d3c9d1721c4428177277c1bb1ca24512127de/mmc/mixins.py#L111-L123
def run_at_subprocess(self, use_subprocess, foo, *args, **kwrags): """ This method for run some function at subprocess. Very useful when you have a problem with memory leaks. """ if use_subprocess is False: return foo(*args, **kwrags) child_pid = os.fork() ...
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This method for run some function at subprocess. Very useful when you have a problem with memory leaks.
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python
train
Unity-Technologies/ml-agents
ml-agents-envs/mlagents/envs/rpc_communicator.py
https://github.com/Unity-Technologies/ml-agents/blob/37d139af636e4a2351751fbf0f2fca5a9ed7457f/ml-agents-envs/mlagents/envs/rpc_communicator.py#L65-L75
def check_port(self, port): """ Attempts to bind to the requested communicator port, checking if it is already in use. """ s = socket.socket(socket.AF_INET, socket.SOCK_STREAM) try: s.bind(("localhost", port)) except socket.error: raise UnityWorker...
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Attempts to bind to the requested communicator port, checking if it is already in use.
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python
train
pycontribs/pyrax
pyrax/queueing.py
https://github.com/pycontribs/pyrax/blob/9ddfd5064b3a292d7337906f3b2d5dce95b50b99/pyrax/queueing.py#L528-L534
def _configure_manager(self): """ Create the manager to handle queues. """ self._manager = QueueManager(self, resource_class=Queue, response_key="queue", uri_base="queues")
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Create the manager to handle queues.
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python
train
go-macaroon-bakery/py-macaroon-bakery
macaroonbakery/bakery/_macaroon.py
https://github.com/go-macaroon-bakery/py-macaroon-bakery/blob/63ce1ef1dabe816eb8aaec48fbb46761c34ddf77/macaroonbakery/bakery/_macaroon.py#L250-L293
def _new_caveat_id(self, base): '''Return a third party caveat id This does not duplicate any third party caveat ids already inside macaroon. If base is non-empty, it is used as the id prefix. @param base bytes @return bytes ''' id = bytearray() if len(b...
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Return a third party caveat id This does not duplicate any third party caveat ids already inside macaroon. If base is non-empty, it is used as the id prefix. @param base bytes @return bytes
[ "Return", "a", "third", "party", "caveat", "id" ]
python
train
ipfs/py-ipfs-api
ipfsapi/client.py
https://github.com/ipfs/py-ipfs-api/blob/7574dad04877b45dbe4ad321dcfa9e880eb2d90c/ipfsapi/client.py#L2282-L2330
def pubsub_peers(self, topic=None, **kwargs): """List the peers we are pubsubbing with. Lists the id's of other IPFS users who we are connected to via some topic. Without specifying a topic, IPFS peers from all subscribed topics will be returned in the data. If a topic is specif...
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List the peers we are pubsubbing with. Lists the id's of other IPFS users who we are connected to via some topic. Without specifying a topic, IPFS peers from all subscribed topics will be returned in the data. If a topic is specified only the IPFS id's of the peers from the spec...
[ "List", "the", "peers", "we", "are", "pubsubbing", "with", "." ]
python
train
Diviyan-Kalainathan/CausalDiscoveryToolbox
cdt/causality/graph/CGNN.py
https://github.com/Diviyan-Kalainathan/CausalDiscoveryToolbox/blob/be228b078ba9eb76c01b3ccba9a1c0ad9e9e5ed1/cdt/causality/graph/CGNN.py#L315-L344
def orient_undirected_graph(self, data, umg, alg='HC'): """Orient the undirected graph using GNN and apply CGNN to improve the graph. Args: data (pandas.DataFrame): Observational data on which causal discovery has to be performed. umg (nx.Graph): Graph that provid...
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Orient the undirected graph using GNN and apply CGNN to improve the graph. Args: data (pandas.DataFrame): Observational data on which causal discovery has to be performed. umg (nx.Graph): Graph that provides the skeleton, on which the GNN then the CGNN algo...
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python
valid
Vital-Fernandez/dazer
bin/lib/Astro_Libraries/f2n.py
https://github.com/Vital-Fernandez/dazer/blob/3c9ae8ae6d40ea33f22cc20dc11365d6d6e65244/bin/lib/Astro_Libraries/f2n.py#L954-L972
def fromfits(infile, hdu = 0, verbose = True): """ Factory function that reads a FITS file and returns a f2nimage object. Use hdu to specify which HDU you want (primary = 0) """ pixelarray, hdr = ft.getdata(infile, hdu, header=True) pixelarray = np.asarray(pixelarray).transpose() #print...
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Factory function that reads a FITS file and returns a f2nimage object. Use hdu to specify which HDU you want (primary = 0)
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python
train
pyqt/python-qt5
setup.py
https://github.com/pyqt/python-qt5/blob/c9ed180c56f6fd3521ffe5fb70904bc5d3f50e5f/setup.py#L35-L58
def get_package_data(): """Include all files from all sub-directories""" package_data = dict() package_data['PyQt5'] = list() for subdir in ("doc/", "examples/", "include/", "mkspecs/", "plugins/", "qml/", "qsci/", "sip/", "translations/", "uic/"): abspath ...
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Include all files from all sub-directories
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python
train
tonioo/sievelib
sievelib/managesieve.py
https://github.com/tonioo/sievelib/blob/88822d1f1daf30ef3dd9ac74911301b0773ef3c8/sievelib/managesieve.py#L485-L511
def connect( self, login, password, authz_id=b"", starttls=False, authmech=None): """Establish a connection with the server. This function must be used. It read the server capabilities and wraps calls to STARTTLS and AUTHENTICATE commands. :param login: username...
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Establish a connection with the server. This function must be used. It read the server capabilities and wraps calls to STARTTLS and AUTHENTICATE commands. :param login: username :param password: clear password :param starttls: use a TLS connection or not :param authmech...
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python
train
google/grr
grr/server/grr_response_server/databases/mysql_flows.py
https://github.com/google/grr/blob/5cef4e8e2f0d5df43ea4877e9c798e0bf60bfe74/grr/server/grr_response_server/databases/mysql_flows.py#L867-L897
def _UpdateRequestsAndScheduleFPRs(self, responses, cursor=None): """Updates requests and writes FlowProcessingRequests if needed.""" request_keys = set( (r.client_id, r.flow_id, r.request_id) for r in responses) flow_keys = set((r.client_id, r.flow_id) for r in responses) response_counts = se...
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Updates requests and writes FlowProcessingRequests if needed.
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python
train
singnet/snet-cli
snet_cli/mpe_service_metadata.py
https://github.com/singnet/snet-cli/blob/1b5ac98cb9a64211c861ead9fcfe6208f2749032/snet_cli/mpe_service_metadata.py#L103-L109
def is_group_name_exists(self, group_name): """ check if group with given name is already exists """ groups = self.m["groups"] for g in groups: if (g["group_name"] == group_name): return True return False
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check if group with given name is already exists
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python
train
kragniz/python-etcd3
etcd3/client.py
https://github.com/kragniz/python-etcd3/blob/0adb14840d4a6011a2023a13f07e247e4c336a80/etcd3/client.py#L453-L476
def replace(self, key, initial_value, new_value): """ Atomically replace the value of a key with a new value. This compares the current value of a key, then replaces it with a new value if it is equal to a specified value. This operation takes place in a transaction. :p...
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python
train
SiLab-Bonn/pyBAR
pybar/run_manager.py
https://github.com/SiLab-Bonn/pyBAR/blob/5ad95bbcd41cd358825823fb78f396cfce23593e/pybar/run_manager.py#L268-L278
def stop(self, msg=None): '''Stopping a run. Control for loops. Gentle stop/abort. This event should provide a more gentle abort. The run should stop ASAP but the run is still considered complete. ''' if not self.stop_run.is_set(): if msg: logging.info('%s%s ...
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Stopping a run. Control for loops. Gentle stop/abort. This event should provide a more gentle abort. The run should stop ASAP but the run is still considered complete.
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python
train
blockstack/virtualchain
virtualchain/lib/ecdsalib.py
https://github.com/blockstack/virtualchain/blob/fcfc970064ca7dfcab26ebd3ab955870a763ea39/virtualchain/lib/ecdsalib.py#L412-L429
def sign_digest(hash_hex, privkey_hex, hashfunc=hashlib.sha256): """ Given a digest and a private key, sign it. Return the base64-encoded signature """ if not isinstance(hash_hex, (str, unicode)): raise ValueError("hash hex is not a string") hash_hex = str(hash_hex) pk_i = decode_p...
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Given a digest and a private key, sign it. Return the base64-encoded signature
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python
train
dnanexus/dx-toolkit
src/python/dxpy/utils/resolver.py
https://github.com/dnanexus/dx-toolkit/blob/74befb53ad90fcf902d8983ae6d74580f402d619/src/python/dxpy/utils/resolver.py#L721-L747
def _resolve_folder(project, parent_folder, folder_name): """ :param project: The project that the folder belongs to :type project: string :param parent_folder: Full path to the parent folder that contains folder_name :type parent_folder: string :param folder_name: Name ...
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:param project: The project that the folder belongs to :type project: string :param parent_folder: Full path to the parent folder that contains folder_name :type parent_folder: string :param folder_name: Name of the folder :type folder_name: string :returns: The path to ...
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python
train