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jobovy/galpy
galpy/util/bovy_coords.py
https://github.com/jobovy/galpy/blob/9c5b9fe65d58835624dffe432be282060918ee08/galpy/util/bovy_coords.py#L660-L716
def pmllpmbb_to_pmrapmdec(pmll,pmbb,l,b,degree=False,epoch=2000.0): """ NAME: pmllpmbb_to_pmrapmdec PURPOSE: rotate proper motions in (l,b) into proper motions in (ra,dec) INPUT: pmll - proper motion in l (multplied with cos(b)) [mas/yr] pmbb - proper motion in b [mas/y...
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NAME: pmllpmbb_to_pmrapmdec PURPOSE: rotate proper motions in (l,b) into proper motions in (ra,dec) INPUT: pmll - proper motion in l (multplied with cos(b)) [mas/yr] pmbb - proper motion in b [mas/yr] l - Galactic longitude b - Galactic lattitude degree ...
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python
train
toomore/goristock
grs/goristock.py
https://github.com/toomore/goristock/blob/e61f57f11a626cfbc4afbf66337fd9d1c51e3e71/grs/goristock.py#L186-L231
def fetch_data(self, stock_no, nowdatetime, firsttime = 1): """ Fetch data from twse.com.tw return list. 從 twse.com.tw 下載資料,回傳格式為 list """ url = 'http://www.twse.com.tw/ch/trading/exchange/STOCK_DAY/STOCK_DAY_print.php?genpage=genpage/Report%(year)d%(mon)02d/%(year)d%(mon)02d_F3_1_8_%(stock)...
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Fetch data from twse.com.tw return list. 從 twse.com.tw 下載資料,回傳格式為 list
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python
train
havardgulldahl/jottalib
src/jottalib/JFS.py
https://github.com/havardgulldahl/jottalib/blob/4d015e4309b1d9055e561ec757363fb2632b4eb7/src/jottalib/JFS.py#L940-L943
def files(self): 'iterate over found files' for _f in self.searchresult.files.iterchildren(): yield ProtoFile.factory(_f, jfs=self.jfs, parentpath=unicode(_f.abspath))
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iterate over found files
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python
train
google/grr
grr/server/grr_response_server/notification.py
https://github.com/google/grr/blob/5cef4e8e2f0d5df43ea4877e9c798e0bf60bfe74/grr/server/grr_response_server/notification.py#L36-L179
def _MapLegacyArgs(nt, message, ref): """Maps UserNotification object to legacy GRRUser.Notify arguments.""" unt = rdf_objects.UserNotification.Type if nt == unt.TYPE_CLIENT_INTERROGATED: return [ "Discovery", aff4.ROOT_URN.Add(ref.client.client_id), _HostPrefix(ref.client.client_id) ...
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Maps UserNotification object to legacy GRRUser.Notify arguments.
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python
train
moderngl/moderngl
moderngl/context.py
https://github.com/moderngl/moderngl/blob/a8f5dce8dc72ae84a2f9523887fb5f6b620049b9/moderngl/context.py#L1135-L1169
def create_standalone_context(require=None, **settings) -> 'Context': ''' Create a standalone ModernGL context. Example:: # Create a context with highest possible supported version ctx = moderngl.create_context() # Require at least OpenGL 4.3 ctx = ...
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Create a standalone ModernGL context. Example:: # Create a context with highest possible supported version ctx = moderngl.create_context() # Require at least OpenGL 4.3 ctx = moderngl.create_context(require=430) Keyword Arguments: require (...
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python
train
Tanganelli/CoAPthon3
coapthon/forward_proxy/coap.py
https://github.com/Tanganelli/CoAPthon3/blob/985763bfe2eb9e00f49ec100c5b8877c2ed7d531/coapthon/forward_proxy/coap.py#L330-L340
def _start_separate_timer(self, transaction): """ Start a thread to handle separate mode. :type transaction: Transaction :param transaction: the transaction that is in processing :rtype : the Timer object """ t = threading.Timer(defines.ACK_TIMEOUT, self._send_ac...
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Start a thread to handle separate mode. :type transaction: Transaction :param transaction: the transaction that is in processing :rtype : the Timer object
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python
train
googlefonts/ufo2ft
Lib/ufo2ft/featureWriters/baseFeatureWriter.py
https://github.com/googlefonts/ufo2ft/blob/915b986558e87bee288765d9218cc1cd4ebf7f4c/Lib/ufo2ft/featureWriters/baseFeatureWriter.py#L70-L95
def setContext(self, font, feaFile, compiler=None): """ Populate a temporary `self.context` namespace, which is reset after each new call to `_write` method. Subclasses can override this to provide contextual information which depends on other data, or set any temporary attributes. ...
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Populate a temporary `self.context` namespace, which is reset after each new call to `_write` method. Subclasses can override this to provide contextual information which depends on other data, or set any temporary attributes. The default implementation sets: - the current font;...
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python
train
fangpenlin/pyramid-handy
pyramid_handy/tweens/basic_auth.py
https://github.com/fangpenlin/pyramid-handy/blob/e3cbc19224ab1f0a14aab556990bceabd2d1f658/pyramid_handy/tweens/basic_auth.py#L31-L41
def basic_auth_tween_factory(handler, registry): """Do basic authentication, parse HTTP_AUTHORIZATION and set remote_user variable to request """ def basic_auth_tween(request): remote_user = get_remote_user(request) if remote_user is not None: request.environ['REMOTE_USER'] ...
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Do basic authentication, parse HTTP_AUTHORIZATION and set remote_user variable to request
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python
train
mitsei/dlkit
dlkit/json_/assessment/objects.py
https://github.com/mitsei/dlkit/blob/445f968a175d61c8d92c0f617a3c17dc1dc7c584/dlkit/json_/assessment/objects.py#L1114-L1126
def clear_rubric(self): """Clears the rubric. raise: NoAccess - ``Metadata.isRequired()`` or ``Metadata.isReadOnly()`` is ``true`` *compliance: mandatory -- This method must be implemented.* """ # Implemented from template for osid.resource.ResourceForm.clear_a...
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Clears the rubric. raise: NoAccess - ``Metadata.isRequired()`` or ``Metadata.isReadOnly()`` is ``true`` *compliance: mandatory -- This method must be implemented.*
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python
train
obsrvbl/flowlogs-reader
flowlogs_reader/__main__.py
https://github.com/obsrvbl/flowlogs-reader/blob/248d8cb3cc586859b6744d30cebce0f359d9900c/flowlogs_reader/__main__.py#L77-L87
def action_aggregate(reader, *args): """Aggregate flow records by 5-tuple and print a tab-separated stream""" all_aggregated = aggregated_records(reader) first_row = next(all_aggregated) keys = sorted(first_row.keys()) print(*keys, sep='\t') # Join the first row with the rest of the rows and pr...
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Aggregate flow records by 5-tuple and print a tab-separated stream
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python
train
globocom/GloboNetworkAPI-client-python
networkapiclient/Ambiente.py
https://github.com/globocom/GloboNetworkAPI-client-python/blob/cf34f913da48d9abbf750114f5d2ac4b2dde137d/networkapiclient/Ambiente.py#L116-L158
def buscar_por_equipamento(self, nome_equipamento, ip_equipamento): """Obtém um ambiente a partir do ip e nome de um equipamento. :param nome_equipamento: Nome do equipamento. :param ip_equipamento: IP do equipamento no formato XXX.XXX.XXX.XXX. :return: Dicionário com a seguinte estrut...
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Obtém um ambiente a partir do ip e nome de um equipamento. :param nome_equipamento: Nome do equipamento. :param ip_equipamento: IP do equipamento no formato XXX.XXX.XXX.XXX. :return: Dicionário com a seguinte estrutura: :: {'ambiente': {'id': < id_ambiente >, ...
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python
train
obriencj/python-javatools
javatools/distdiff.py
https://github.com/obriencj/python-javatools/blob/9e2332b452ddc508bed0615937dddcb2cf051557/javatools/distdiff.py#L591-L617
def add_distdiff_optgroup(parser): """ Option group relating to the use of a DistChange or DistReport """ # for the --processes default cpus = cpu_count() og = parser.add_argument_group("Distribution Checking Options") og.add_argument("--processes", type=int, default=cpus, ...
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Option group relating to the use of a DistChange or DistReport
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python
train
ansible/molecule
molecule/command/init/scenario.py
https://github.com/ansible/molecule/blob/766dc35b0b0ce498cd5e3a62b40f828742d0d08c/molecule/command/init/scenario.py#L162-L186
def scenario(ctx, dependency_name, driver_name, lint_name, provisioner_name, role_name, scenario_name, verifier_name): # pragma: no cover """ Initialize a new scenario for use with Molecule. """ command_args = { 'dependency_name': dependency_name, 'driver_name': driver_name, ...
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Initialize a new scenario for use with Molecule.
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python
train
tnkteja/myhelp
virtualEnvironment/lib/python2.7/site-packages/coverage/templite.py
https://github.com/tnkteja/myhelp/blob/fb3a4809d448ad14d5b2e6ddf2e7e89ad52b71cb/virtualEnvironment/lib/python2.7/site-packages/coverage/templite.py#L17-L25
def add_line(self, line): """Add a line of source to the code. Don't include indentations or newlines. """ self.code.append(" " * self.indent_amount) self.code.append(line) self.code.append("\n")
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Add a line of source to the code. Don't include indentations or newlines.
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python
test
f3at/feat
src/feat/agencies/net/agency.py
https://github.com/f3at/feat/blob/15da93fc9d6ec8154f52a9172824e25821195ef8/src/feat/agencies/net/agency.py#L522-L524
def reconfigure_database(self, host, port, name='feat'): '''force database reconnector to connect to the (host, port, name)''' self._database.reconfigure(host, port, name)
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force database reconnector to connect to the (host, port, name)
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python
train
jcushman/pdfquery
pdfquery/pdfquery.py
https://github.com/jcushman/pdfquery/blob/f1c05d15e0c1b7c523a0971bc89b5610d8560f79/pdfquery/pdfquery.py#L74-L83
def _comp_bbox(el, el2): """ Return 1 if el in el2, -1 if el2 in el, else 0""" # only compare if both elements have x/y coordinates if _comp_bbox_keys_required <= set(el.keys()) and \ _comp_bbox_keys_required <= set(el2.keys()): if _box_in_box(el2, el): return 1 ...
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Return 1 if el in el2, -1 if el2 in el, else 0
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python
train
pymacaron/pymacaron
pymacaron/utils.py
https://github.com/pymacaron/pymacaron/blob/af244f203f8216108b39d374d46bf8e1813f13d5/pymacaron/utils.py#L68-L76
def get_container_version(): """Return the version of the docker container running the present server, or '' if not in a container""" root_dir = os.path.dirname(os.path.realpath(sys.argv[0])) version_file = os.path.join(root_dir, 'VERSION') if os.path.exists(version_file): with open(version_...
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Return the version of the docker container running the present server, or '' if not in a container
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python
train
clalancette/pycdlib
pycdlib/rockridge.py
https://github.com/clalancette/pycdlib/blob/1e7b77a809e905d67dc71e12d70e850be26b6233/pycdlib/rockridge.py#L1083-L1100
def record(self): # type: () -> bytes ''' Generate a string representing the Rock Ridge Symbolic Link record. Parameters: None. Returns: String containing the Rock Ridge record. ''' if not self._initialized: raise pycdlibexception.Py...
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Generate a string representing the Rock Ridge Symbolic Link record. Parameters: None. Returns: String containing the Rock Ridge record.
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python
train
iotile/coretools
iotilesensorgraph/iotile/sg/walker.py
https://github.com/iotile/coretools/blob/2d794f5f1346b841b0dcd16c9d284e9bf2f3c6ec/iotilesensorgraph/iotile/sg/walker.py#L252-L267
def notify_rollover(self, stream): """Notify that a reading in the given stream was overwritten. Args: stream (DataStream): The stream that had overwritten data. """ self.offset -= 1 if not self.matches(stream): return if self._count == 0: ...
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Notify that a reading in the given stream was overwritten. Args: stream (DataStream): The stream that had overwritten data.
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python
train
dj-stripe/dj-stripe
djstripe/webhooks.py
https://github.com/dj-stripe/dj-stripe/blob/a5308a3808cd6e2baba49482f7a699f3a8992518/djstripe/webhooks.py#L71-L98
def call_handlers(event): """ Invoke all handlers for the provided event type/sub-type. The handlers are invoked in the following order: 1. Global handlers 2. Event type handlers 3. Event sub-type handlers Handlers within each group are invoked in order of registration. :param event: The event model object....
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python
train
hyperledger/indy-sdk
vcx/wrappers/python3/vcx/api/proof.py
https://github.com/hyperledger/indy-sdk/blob/55240dc170308d7883c48f03f308130a6d077be6/vcx/wrappers/python3/vcx/api/proof.py#L116-L138
async def request_proof(self, connection: Connection): """ Example: connection = await Connection.create(source_id) await connection.connect(phone_number) name = "proof name" requested_attrs = [{"name": "age", "restrictions": [{"schema_id": "6XFh8yBzrpJQmNyZzgoTqB:2:schem...
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Example: connection = await Connection.create(source_id) await connection.connect(phone_number) name = "proof name" requested_attrs = [{"name": "age", "restrictions": [{"schema_id": "6XFh8yBzrpJQmNyZzgoTqB:2:schema_name:0.0.11", "schema_name":"Faber Student Info", "schema_version":"1.0",...
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python
train
swift-nav/libsbp
python/sbp/client/util/settingmonitor.py
https://github.com/swift-nav/libsbp/blob/5a950608506b23e31b73ef7065da905b646055c1/python/sbp/client/util/settingmonitor.py#L42-L55
def wait_for_setting_value(self, section, setting, value, wait_time=5.0): """Function to wait wait_time seconds to see a SBP_MSG_SETTINGS_READ_RESP message with a user-specified value """ expire = time.time() + wait_time ok = False while not ok and time.time() < expire: ...
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Function to wait wait_time seconds to see a SBP_MSG_SETTINGS_READ_RESP message with a user-specified value
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python
train
ArtoLabs/SimpleSteem
simplesteem/simplesteem.py
https://github.com/ArtoLabs/SimpleSteem/blob/ce8be0ae81f8878b460bc156693f1957f7dd34a3/simplesteem/simplesteem.py#L181-L199
def reward_pool_balances(self): ''' Fetches and returns the 3 values needed to calculate the reward pool and other associated values such as rshares. Returns the reward balance, all recent claims and the current price of steem. ''' if self.reward_balance > 0: ...
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Fetches and returns the 3 values needed to calculate the reward pool and other associated values such as rshares. Returns the reward balance, all recent claims and the current price of steem.
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python
train
biolink/ontobio
ontobio/sim/api/owlsim3.py
https://github.com/biolink/ontobio/blob/4e512a7831cfe6bc1b32f2c3be2ba41bc5cf7345/ontobio/sim/api/owlsim3.py#L35-L43
def compare(self, query_classes: List, reference_classes: List, method: Optional) -> SimResult: """ Given two lists of entites (classes, individual) return their similarity """ raise NotImplementedError
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Given two lists of entites (classes, individual) return their similarity
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python
train
MrMinimal64/timezonefinder
timezonefinder/timezonefinder.py
https://github.com/MrMinimal64/timezonefinder/blob/96cc43afb3bae57ffd002ab4cf104fe15eda2257/timezonefinder/timezonefinder.py#L423-L489
def timezone_at(self, *, lng, lat): """ this function looks up in which polygons the point could be included in to speed things up there are shortcuts being used (stored in a binary file) especially for large polygons it is expensive to check if a point is really included, so cer...
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this function looks up in which polygons the point could be included in to speed things up there are shortcuts being used (stored in a binary file) especially for large polygons it is expensive to check if a point is really included, so certain simplifications are made and even when you get a hi...
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python
train
materialsproject/pymatgen
pymatgen/core/lattice.py
https://github.com/materialsproject/pymatgen/blob/4ca558cf72f8d5f8a1f21dfdfc0181a971c186da/pymatgen/core/lattice.py#L779-L926
def get_niggli_reduced_lattice(self, tol: float = 1e-5) -> "Lattice": """ Get the Niggli reduced lattice using the numerically stable algo proposed by R. W. Grosse-Kunstleve, N. K. Sauter, & P. D. Adams, Acta Crystallographica Section A Foundations of Crystallography, 2003, 60(1)...
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Get the Niggli reduced lattice using the numerically stable algo proposed by R. W. Grosse-Kunstleve, N. K. Sauter, & P. D. Adams, Acta Crystallographica Section A Foundations of Crystallography, 2003, 60(1), 1-6. doi:10.1107/S010876730302186X Args: tol (float): The numerical...
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python
train
frictionlessdata/tabulator-py
tabulator/validate.py
https://github.com/frictionlessdata/tabulator-py/blob/06c25845a7139d919326388cc6335f33f909db8c/tabulator/validate.py#L14-L42
def validate(source, scheme=None, format=None): '''Check if tabulator is able to load the source. Args: source (Union[str, IO]): The source path or IO object. scheme (str, optional): The source scheme. Auto-detect by default. format (str, optional): The source file format. Auto-detect b...
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Check if tabulator is able to load the source. Args: source (Union[str, IO]): The source path or IO object. scheme (str, optional): The source scheme. Auto-detect by default. format (str, optional): The source file format. Auto-detect by default. Returns: bool: Whether tabulato...
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python
train
numenta/nupic
src/nupic/frameworks/opf/opf_task_driver.py
https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/frameworks/opf/opf_task_driver.py#L459-L467
def enterPhase(self): """ [_IterationPhase method implementation] Performs initialization that is necessary upon entry to the phase. Must be called before handleInputRecord() at the beginning of each phase """ super(_IterationPhaseLearnOnly, self).enterPhase() self.__model.enableLearning() s...
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[_IterationPhase method implementation] Performs initialization that is necessary upon entry to the phase. Must be called before handleInputRecord() at the beginning of each phase
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python
valid
ArduPilot/MAVProxy
MAVProxy/modules/mavproxy_dataflash_logger.py
https://github.com/ArduPilot/MAVProxy/blob/f50bdeff33064876f7dc8dc4683d278ff47f75d5/MAVProxy/modules/mavproxy_dataflash_logger.py#L125-L144
def status(self): '''returns information about module''' if self.download is None: return "Not started" transferred = self.download - self.prev_download self.prev_download = self.download now = time.time() interval = now - self.last_status_time self.l...
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returns information about module
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python
train
pycontribs/pyrax
pyrax/object_storage.py
https://github.com/pycontribs/pyrax/blob/9ddfd5064b3a292d7337906f3b2d5dce95b50b99/pyrax/object_storage.py#L2846-L2857
def download_object(self, container, obj, directory, structure=True): """ Fetches the object from storage, and writes it to the specified directory. The directory must exist before calling this method. If the object name represents a nested folder structure, such as "foo/bar/baz...
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Fetches the object from storage, and writes it to the specified directory. The directory must exist before calling this method. If the object name represents a nested folder structure, such as "foo/bar/baz.txt", that folder structure will be created in the target directory by default. I...
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python
train
joelfrederico/SciSalt
scisalt/facettools/logbookForm.py
https://github.com/joelfrederico/SciSalt/blob/7bf57c49c7dde0a8b0aa337fbd2fbd527ce7a67f/scisalt/facettools/logbookForm.py#L526-L530
def show(self): '''Display menus and connect even signals.''' self.parent.addLayout(self._logSelectLayout) self.menuCount += 1 self._connectSlots()
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Display menus and connect even signals.
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python
valid
nutechsoftware/alarmdecoder
alarmdecoder/devices/serial_device.py
https://github.com/nutechsoftware/alarmdecoder/blob/b0c014089e24455228cb4402cf30ba98157578cd/alarmdecoder/devices/serial_device.py#L174-L192
def read(self): """ Reads a single character from the device. :returns: character read from the device :raises: :py:class:`~alarmdecoder.util.CommError` """ data = '' try: read_ready, _, _ = select.select([self._device.fileno()], [], [], 0.5) ...
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Reads a single character from the device. :returns: character read from the device :raises: :py:class:`~alarmdecoder.util.CommError`
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python
train
googleapis/google-cloud-python
storage/google/cloud/storage/blob.py
https://github.com/googleapis/google-cloud-python/blob/85e80125a59cb10f8cb105f25ecc099e4b940b50/storage/google/cloud/storage/blob.py#L1592-L1619
def update_storage_class(self, new_class, client=None): """Update blob's storage class via a rewrite-in-place. This helper will wait for the rewrite to complete before returning, so it may take some time for large files. See https://cloud.google.com/storage/docs/per-object-stora...
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Update blob's storage class via a rewrite-in-place. This helper will wait for the rewrite to complete before returning, so it may take some time for large files. See https://cloud.google.com/storage/docs/per-object-storage-class If :attr:`user_project` is set on the bucket, bil...
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python
train
bolt-project/bolt
bolt/spark/array.py
https://github.com/bolt-project/bolt/blob/9cd7104aa085498da3097b72696184b9d3651c51/bolt/spark/array.py#L125-L191
def map(self, func, axis=(0,), value_shape=None, dtype=None, with_keys=False): """ Apply a function across an axis. Array will be aligned so that the desired set of axes are in the keys, which may incur a swap. Parameters ---------- func : function F...
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Apply a function across an axis. Array will be aligned so that the desired set of axes are in the keys, which may incur a swap. Parameters ---------- func : function Function of a single array to apply. If with_keys=True, function should be of a (tuple, ...
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python
test
payu-org/payu
payu/runlog.py
https://github.com/payu-org/payu/blob/1442a9a226012eff248b8097cc1eaabc3e224867/payu/runlog.py#L107-L138
def push(self): """Push the changes to the remote repository. Usage: payu push This command pushes local runlog changes to the remote runlog repository, currently named `payu`, using the SSH key associated with this experiment. For an experiment `test`, it is equivalen...
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Push the changes to the remote repository. Usage: payu push This command pushes local runlog changes to the remote runlog repository, currently named `payu`, using the SSH key associated with this experiment. For an experiment `test`, it is equivalent to the following command:...
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python
train
bachiraoun/pyrep
Repository.py
https://github.com/bachiraoun/pyrep/blob/0449bf2fad3e3e8dda855d4686a8869efeefd433/Repository.py#L1109-L1135
def is_name_allowed(self, path): """ Get whether creating a file or a directory from the basenane of the given path is allowed :Parameters: #. path (str): The absolute or relative path or simply the file or directory name. :Returns: #. all...
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Get whether creating a file or a directory from the basenane of the given path is allowed :Parameters: #. path (str): The absolute or relative path or simply the file or directory name. :Returns: #. allowed (bool): Whether name is allowed. #. ...
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python
valid
iancmcc/txrestapi
txrestapi/json_resource.py
https://github.com/iancmcc/txrestapi/blob/25c1f2d0087db45ea9edefc3c6fb81f5293458b6/txrestapi/json_resource.py#L34-L44
def _setHeaders(self, request): """ Those headers will allow you to call API methods from web browsers, they require CORS: https://en.wikipedia.org/wiki/Cross-origin_resource_sharing """ request.responseHeaders.addRawHeader(b'content-type', b'application/json') reques...
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Those headers will allow you to call API methods from web browsers, they require CORS: https://en.wikipedia.org/wiki/Cross-origin_resource_sharing
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python
train
fishtown-analytics/dbt
core/dbt/main.py
https://github.com/fishtown-analytics/dbt/blob/aa4f771df28b307af0cf9fe2fc24432f10a8236b/core/dbt/main.py#L116-L134
def initialize_config_values(parsed): """Given the parsed args, initialize the dbt tracking code. It would be nice to re-use this profile later on instead of parsing it twice, but dbt's intialization is not structured in a way that makes that easy. """ try: cfg = UserConfig.from_directo...
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Given the parsed args, initialize the dbt tracking code. It would be nice to re-use this profile later on instead of parsing it twice, but dbt's intialization is not structured in a way that makes that easy.
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python
train
mitsei/dlkit
dlkit/json_/authorization/searches.py
https://github.com/mitsei/dlkit/blob/445f968a175d61c8d92c0f617a3c17dc1dc7c584/dlkit/json_/authorization/searches.py#L99-L111
def get_authorizations(self): """Gets the authorization list resulting from the search. return: (osid.authorization.AuthorizationList) - the authorization list raise: IllegalState - list has already been retrieved *compliance: mandatory -- This method must be implemente...
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Gets the authorization list resulting from the search. return: (osid.authorization.AuthorizationList) - the authorization list raise: IllegalState - list has already been retrieved *compliance: mandatory -- This method must be implemented.*
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python
train
Fuyukai/asyncwebsockets
asyncwebsockets/websocket.py
https://github.com/Fuyukai/asyncwebsockets/blob/e33e75fd51ce5ae0feac244e8407d2672c5b4745/asyncwebsockets/websocket.py#L188-L193
def _wrap_data(data: Union[str, bytes]): """ Wraps data into the right event. """ MsgType = TextMessage if isinstance(data, str) else BytesMessage return MsgType(data=data, frame_finished=True, message_finished=True)
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Wraps data into the right event.
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python
train
Azure/blobxfer
blobxfer/operations/progress.py
https://github.com/Azure/blobxfer/blob/3eccbe7530cc6a20ab2d30f9e034b6f021817f34/blobxfer/operations/progress.py#L52-L102
def update_progress_bar( go, optext, start, total_files, files_sofar, total_bytes, bytes_sofar, stdin_upload=False): # type: (blobxfer.models.options.General, str, datetime.datetime, int, # int, int, int, bool) -> None """Update the progress bar :param blobxfer.models.options.Gene...
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Update the progress bar :param blobxfer.models.options.General go: general options :param str optext: operation prefix text :param datetime.datetime start: start time :param int total_files: total number of files :param int files_sofar: files transfered so far :param int total_bytes: total numbe...
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python
train
ev3dev/ev3dev-lang-python
ev3dev2/led.py
https://github.com/ev3dev/ev3dev-lang-python/blob/afc98d35004b533dc161a01f7c966e78607d7c1e/ev3dev2/led.py#L413-L457
def animate_police_lights(self, color1, color2, group1='LEFT', group2='RIGHT', sleeptime=0.5, duration=5, block=True): """ Cycle the ``group1`` and ``group2`` LEDs between ``color1`` and ``color2`` to give the effect of police lights. Alternate the ``group1`` and ``group2`` LEDs every `...
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Cycle the ``group1`` and ``group2`` LEDs between ``color1`` and ``color2`` to give the effect of police lights. Alternate the ``group1`` and ``group2`` LEDs every ``sleeptime`` seconds. Animate for ``duration`` seconds. If ``duration`` is None animate for forever. Example: ....
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python
train
project-ncl/pnc-cli
pnc_cli/buildconfigurations.py
https://github.com/project-ncl/pnc-cli/blob/3dc149bf84928f60a8044ac50b58bbaddd451902/pnc_cli/buildconfigurations.py#L21-L30
def get_build_configuration_id_by_name(name): """ Returns the id of the build configuration matching name :param name: name of build configuration :return: id of the matching build configuration, or None if no match found """ response = utils.checked_api_call(pnc_api.build_configs, 'get_all', q=...
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Returns the id of the build configuration matching name :param name: name of build configuration :return: id of the matching build configuration, or None if no match found
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python
train
soravux/scoop
scoop/_comm/scoopzmq.py
https://github.com/soravux/scoop/blob/d391dfa62f47e49d48328ee9cf08aa114256fd33/scoop/_comm/scoopzmq.py#L399-L426
def _sendReply(self, destination, fid, *args): """Send a REPLY directly to its destination. If it doesn't work, launch it back to the broker.""" # Try to send the result directly to its parent self.addPeer(destination) try: self.direct_socket.send_multipart([ ...
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Send a REPLY directly to its destination. If it doesn't work, launch it back to the broker.
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python
train
apache/incubator-mxnet
python/mxnet/model.py
https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/python/mxnet/model.py#L908-L928
def save(self, prefix, epoch=None): """Checkpoint the model checkpoint into file. You can also use `pickle` to do the job if you only work on Python. The advantage of `load` and `save` (as compared to `pickle`) is that the resulting file can be loaded from other MXNet language bindings. ...
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Checkpoint the model checkpoint into file. You can also use `pickle` to do the job if you only work on Python. The advantage of `load` and `save` (as compared to `pickle`) is that the resulting file can be loaded from other MXNet language bindings. One can also directly `load`/`save` fro...
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python
train
joke2k/faker
faker/providers/ssn/it_IT/__init__.py
https://github.com/joke2k/faker/blob/965824b61132e52d92d1a6ce470396dbbe01c96c/faker/providers/ssn/it_IT/__init__.py#L18-L24
def checksum(value): """ Calculates the checksum char used for the 16th char. Author: Vincenzo Palazzo """ return chr(65 + sum(CHECKSUM_TABLE[index % 2][ALPHANUMERICS_DICT[char]] for index, char in enumerate(value)) % 26)
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Calculates the checksum char used for the 16th char. Author: Vincenzo Palazzo
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python
train
rytilahti/python-songpal
songpal/method.py
https://github.com/rytilahti/python-songpal/blob/0443de6b3d960b9067a851d82261ca00e46b4618/songpal/method.py#L107-L115
def asdict(self) -> Dict[str, Union[Dict, Union[str, Dict]]]: """Return a dictionary describing the method. This can be used to dump the information into a JSON file. """ return { "service": self.service.name, **self.signature.serialize(), }
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Return a dictionary describing the method. This can be used to dump the information into a JSON file.
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python
train
tensorflow/tensor2tensor
tensor2tensor/models/image_transformer.py
https://github.com/tensorflow/tensor2tensor/blob/272500b6efe353aeb638d2745ed56e519462ca31/tensor2tensor/models/image_transformer.py#L255-L270
def imagetransformer_cifar10_base(): """Best config for 2.90 bits/dim on CIFAR10 using cross entropy.""" hparams = image_transformer_base() hparams.batch_size = 4 hparams.num_heads = 4 hparams.num_decoder_layers = 12 hparams.block_length = 256 hparams.hidden_size = 512 hparams.filter_size = 2048 hpara...
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Best config for 2.90 bits/dim on CIFAR10 using cross entropy.
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python
train
mpg-age-bioinformatics/AGEpy
AGEpy/cytoscape.py
https://github.com/mpg-age-bioinformatics/AGEpy/blob/887808a7a2c1504f39ce8d8cb36c15c1721cd29f/AGEpy/cytoscape.py#L462-L504
def result(filetype="PNG",saveas=None, host=cytoscape_host,port=cytoscape_port): """ Checks the current network. Note: works only on localhost :param filetype: file type, default="PNG" :param saveas: /path/to/non/tmp/file.prefix :param host: cytoscape host address, default=cytoscape_h...
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Checks the current network. Note: works only on localhost :param filetype: file type, default="PNG" :param saveas: /path/to/non/tmp/file.prefix :param host: cytoscape host address, default=cytoscape_host :param port: cytoscape port, default=1234 :returns: an image
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python
train
saltstack/salt
salt/modules/dockermod.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/dockermod.py#L1509-L1548
def diff(name): ''' Get information on changes made to container's filesystem since it was created. Equivalent to running the ``docker diff`` Docker CLI command. name Container name or ID **RETURN DATA** A dictionary containing any of the following keys: - ``Added`` - A list of ...
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Get information on changes made to container's filesystem since it was created. Equivalent to running the ``docker diff`` Docker CLI command. name Container name or ID **RETURN DATA** A dictionary containing any of the following keys: - ``Added`` - A list of paths that were added. -...
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python
train
RPi-Distro/python-gpiozero
gpiozero/output_devices.py
https://github.com/RPi-Distro/python-gpiozero/blob/7b67374fd0c8c4fde5586d9bad9531f076db9c0c/gpiozero/output_devices.py#L123-L132
def toggle(self): """ Reverse the state of the device. If it's on, turn it off; if it's off, turn it on. """ with self._lock: if self.is_active: self.off() else: self.on()
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Reverse the state of the device. If it's on, turn it off; if it's off, turn it on.
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python
train
ejeschke/ginga
ginga/Bindings.py
https://github.com/ejeschke/ginga/blob/a78c893ec6f37a837de851947e9bb4625c597915/ginga/Bindings.py#L1726-L1732
def ms_cmap_restore(self, viewer, event, data_x, data_y, msg=True): """An interactive way to restore the colormap settings after a rotate or invert operation. """ if self.cancmap and (event.state == 'down'): self.restore_colormap(viewer, msg) return True
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An interactive way to restore the colormap settings after a rotate or invert operation.
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python
train
opentracing-contrib/python-flask
flask_opentracing/tracing.py
https://github.com/opentracing-contrib/python-flask/blob/74bfe8bcd00eee9ce75a15c1634fda4c5d5f26ca/flask_opentracing/tracing.py#L66-L93
def trace(self, *attributes): """ Function decorator that traces functions NOTE: Must be placed after the @app.route decorator @param attributes any number of flask.Request attributes (strings) to be set as tags on the created span """ def decorator(f): ...
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Function decorator that traces functions NOTE: Must be placed after the @app.route decorator @param attributes any number of flask.Request attributes (strings) to be set as tags on the created span
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python
train
gouthambs/Flask-Blogging
flask_blogging/storage.py
https://github.com/gouthambs/Flask-Blogging/blob/6636b8941175e9910f116a329521f96b8b05a9ac/flask_blogging/storage.py#L9-L43
def save_post(self, title, text, user_id, tags, draft=False, post_date=None, last_modified_date=None, meta_data=None, post_id=None): """ Persist the blog post data. If ``post_id`` is ``None`` or ``post_id`` is invalid, the post must be inserted into the storag...
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Persist the blog post data. If ``post_id`` is ``None`` or ``post_id`` is invalid, the post must be inserted into the storage. If ``post_id`` is a valid id, then the data must be updated. :param title: The title of the blog post :type title: str :param text: The text of the blog ...
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python
train
all-umass/graphs
graphs/mixins/viz.py
https://github.com/all-umass/graphs/blob/4fbeb025dfe33340335f34300f58dd3809228822/graphs/mixins/viz.py#L13-L55
def plot(self, coordinates, directed=False, weighted=False, fig='current', ax=None, edge_style=None, vertex_style=None, title=None, cmap=None): '''Plot the graph using matplotlib in 2 or 3 dimensions. coordinates : (n,2) or (n,3) array of vertex coordinates directed : if True, edges have arrows ...
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Plot the graph using matplotlib in 2 or 3 dimensions. coordinates : (n,2) or (n,3) array of vertex coordinates directed : if True, edges have arrows indicating direction. weighted : if True, edges are colored by their weight. fig : a matplotlib Figure to use, or one of {'new','current'}. Defaults to ...
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python
train
quantopian/zipline
zipline/pipeline/factors/factor.py
https://github.com/quantopian/zipline/blob/77ad15e6dc4c1cbcdc133653bac8a63fc704f7fe/zipline/pipeline/factors/factor.py#L1393-L1404
def _compute(self, arrays, dates, assets, mask): """ For each row in the input, compute a like-shaped array of per-row ranks. """ return masked_rankdata_2d( arrays[0], mask, self.inputs[0].missing_value, self._method, se...
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For each row in the input, compute a like-shaped array of per-row ranks.
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python
train
spdx/tools-python
spdx/parsers/tagvaluebuilders.py
https://github.com/spdx/tools-python/blob/301d72f6ae57c832c1da7f6402fa49b192de6810/spdx/parsers/tagvaluebuilders.py#L408-L414
def reset_annotations(self): """Resets the builder's state to allow building new annotations.""" # FIXME: this state does not make sense self.annotation_date_set = False self.annotation_comment_set = False self.annotation_type_set = False self.annotation_spdx_id_set = Fal...
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Resets the builder's state to allow building new annotations.
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python
valid
chaoss/grimoirelab-perceval
perceval/backends/core/gitlab.py
https://github.com/chaoss/grimoirelab-perceval/blob/41c908605e88b7ebc3a536c643fa0f212eaf9e0e/perceval/backends/core/gitlab.py#L481-L492
def notes(self, item_type, item_id): """Get the notes from pagination""" payload = { 'order_by': 'updated_at', 'sort': 'asc', 'per_page': PER_PAGE } path = urijoin(item_type, str(item_id), GitLabClient.NOTES) return self.fetch_items(path, pa...
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Get the notes from pagination
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python
test
StackStorm/pybind
pybind/nos/v6_0_2f/protocol/spanning_tree/__init__.py
https://github.com/StackStorm/pybind/blob/44c467e71b2b425be63867aba6e6fa28b2cfe7fb/pybind/nos/v6_0_2f/protocol/spanning_tree/__init__.py#L166-L187
def _set_pvst(self, v, load=False): """ Setter method for pvst, mapped from YANG variable /protocol/spanning_tree/pvst (container) If this variable is read-only (config: false) in the source YANG file, then _set_pvst is considered as a private method. Backends looking to populate this variable shoul...
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Setter method for pvst, mapped from YANG variable /protocol/spanning_tree/pvst (container) If this variable is read-only (config: false) in the source YANG file, then _set_pvst is considered as a private method. Backends looking to populate this variable should do so via calling thisObj._set_pvst() dire...
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python
train
influxdata/influxdb-python
influxdb/influxdb08/helper.py
https://github.com/influxdata/influxdb-python/blob/d5d12499f3755199d5eedd8b363450f1cf4073bd/influxdb/influxdb08/helper.py#L136-L148
def _json_body_(cls): """Return JSON body of the datapoints. :return: JSON body of the datapoints. """ json = [] for series_name, data in six.iteritems(cls._datapoints): json.append({'name': series_name, 'columns': cls._fields, ...
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Return JSON body of the datapoints. :return: JSON body of the datapoints.
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python
train
MacHu-GWU/angora-project
angora/crawler/simplecrawler.py
https://github.com/MacHu-GWU/angora-project/blob/689a60da51cd88680ddbe26e28dbe81e6b01d275/angora/crawler/simplecrawler.py#L185-L192
def html_with_encoding(self, url, timeout=None, encoding="utf-8"): """Manually get html with user encoding setting. """ response = self.get_response(url, timeout=timeout) if response: return self.decoder.decode(response.content, encoding)[0] else: return N...
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Manually get html with user encoding setting.
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python
train
ArduPilot/MAVProxy
MAVProxy/modules/mavproxy_cmdlong.py
https://github.com/ArduPilot/MAVProxy/blob/f50bdeff33064876f7dc8dc4683d278ff47f75d5/MAVProxy/modules/mavproxy_cmdlong.py#L316-L344
def cmd_long(self, args): '''execute supplied command long''' if len(args) < 1: print("Usage: long <command> [arg1] [arg2]...") return command = None if args[0].isdigit(): command = int(args[0]) else: try: command = ...
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execute supplied command long
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python
train
mitsei/dlkit
dlkit/json_/learning/managers.py
https://github.com/mitsei/dlkit/blob/445f968a175d61c8d92c0f617a3c17dc1dc7c584/dlkit/json_/learning/managers.py#L628-L643
def get_objective_admin_session(self): """Gets the ``OsidSession`` associated with the objective administration service. return: (osid.learning.ObjectiveAdminSession) - an ``ObjectiveAdminSession`` raise: OperationFailed - unable to complete request raise: Unimplemente...
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Gets the ``OsidSession`` associated with the objective administration service. return: (osid.learning.ObjectiveAdminSession) - an ``ObjectiveAdminSession`` raise: OperationFailed - unable to complete request raise: Unimplemented - ``supports_objective_admin()`` is ...
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python
train
genialis/django-priority-batch
src/django_priority_batch/prioritized_batcher.py
https://github.com/genialis/django-priority-batch/blob/63da74ef7348a67b7e31a131f295f51511495f30/src/django_priority_batch/prioritized_batcher.py#L33-L43
def global_instance(cls): """Return a per-thread global batcher instance.""" try: return GLOBAL_BATCHER.instance except AttributeError: instance = PrioritizedBatcher( **getattr(settings, 'PRIORITIZED_BATCHER', {}) ) GLOBAL_BATCHER....
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Return a per-thread global batcher instance.
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python
train
log2timeline/plaso
plaso/multi_processing/task_manager.py
https://github.com/log2timeline/plaso/blob/9c564698d2da3ffbe23607a3c54c0582ea18a6cc/plaso/multi_processing/task_manager.py#L511-L519
def SampleTaskStatus(self, task, status): """Takes a sample of the status of the task for profiling. Args: task (Task): a task. status (str): status. """ if self._tasks_profiler: self._tasks_profiler.Sample(task, status)
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Takes a sample of the status of the task for profiling. Args: task (Task): a task. status (str): status.
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python
train
bhmm/bhmm
bhmm/estimators/bayesian_sampling.py
https://github.com/bhmm/bhmm/blob/9804d18c2ddb684fb4d90b544cc209617a89ca9a/bhmm/estimators/bayesian_sampling.py#L279-L287
def _updateHiddenStateTrajectories(self): """Sample a new set of state trajectories from the conditional distribution P(S | T, E, O) """ self.model.hidden_state_trajectories = list() for trajectory_index in range(self.nobs): hidden_state_trajectory = self._sampleHiddenStateT...
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Sample a new set of state trajectories from the conditional distribution P(S | T, E, O)
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python
train
disqus/nydus
nydus/db/routers/base.py
https://github.com/disqus/nydus/blob/9b505840da47a34f758a830c3992fa5dcb7bb7ad/nydus/db/routers/base.py#L175-L184
def check_down_connections(self): """ Iterates through all connections which were previously listed as unavailable and marks any that have expired their retry_timeout as being up. """ now = time.time() for db_num, marked_down_at in self._down_connections.items(): ...
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Iterates through all connections which were previously listed as unavailable and marks any that have expired their retry_timeout as being up.
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python
train
nugget/python-insteonplm
insteonplm/messagecallback.py
https://github.com/nugget/python-insteonplm/blob/65548041f1b0729ae1ae904443dd81b0c6cbf1bf/insteonplm/messagecallback.py#L83-L105
def remove(self, msg, callback): """Remove a callback from the callback list. msg: Message template callback: Callback method to remove. If callback is None, all callbacks for the message template are removed. """ if callback is None: self._dict.pop(...
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Remove a callback from the callback list. msg: Message template callback: Callback method to remove. If callback is None, all callbacks for the message template are removed.
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python
train
erdc/RAPIDpy
RAPIDpy/dataset.py
https://github.com/erdc/RAPIDpy/blob/50e14e130554b254a00ff23b226cd7e4c6cfe91a/RAPIDpy/dataset.py#L948-L1077
def write_flows_to_gssha_time_series_xys(self, path_to_output_file, series_name, series_id, river_index=None, ...
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Write out RAPID output to GSSHA WMS time series xys file. Parameters ---------- path_to_output_file: str Path to the output xys file. series_name: str The name for the series. series_id: int The ID to give the series. river_index: :obj...
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python
train
proycon/pynlpl
pynlpl/formats/folia.py
https://github.com/proycon/pynlpl/blob/7707f69a91caaa6cde037f0d0379f1d42500a68b/pynlpl/formats/folia.py#L594-L621
def commonancestors(Class, *args): """Generator function to find common ancestors of a particular type for any two or more FoLiA element instances. The function produces all common ancestors of the type specified, starting from the closest one up to the most distant one. Parameters: Class: The typ...
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Generator function to find common ancestors of a particular type for any two or more FoLiA element instances. The function produces all common ancestors of the type specified, starting from the closest one up to the most distant one. Parameters: Class: The type of ancestor to find, should be the :clas...
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python
train
chaoss/grimoirelab-perceval
perceval/backends/core/groupsio.py
https://github.com/chaoss/grimoirelab-perceval/blob/41c908605e88b7ebc3a536c643fa0f212eaf9e0e/perceval/backends/core/groupsio.py#L271-L294
def setup_cmd_parser(cls): """Returns the Groupsio argument parser.""" parser = BackendCommandArgumentParser(cls.BACKEND.CATEGORIES, from_date=True, token_auth=True) # Backend token is required ...
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Returns the Groupsio argument parser.
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python
test
eaton-lab/toytree
toytree/etemini.py
https://github.com/eaton-lab/toytree/blob/0347ed2098acc5f707fadf52a0ecd411a6d1859c/toytree/etemini.py#L665-L672
def _iter_descendants_levelorder(self, is_leaf_fn=None): """ Iterate over all desdecendant nodes.""" tovisit = deque([self]) while len(tovisit) > 0: node = tovisit.popleft() yield node if not is_leaf_fn or not is_leaf_fn(node): tovisit.extend(n...
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Iterate over all desdecendant nodes.
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python
train
LettError/MutatorMath
Lib/mutatorMath/objects/mutator.py
https://github.com/LettError/MutatorMath/blob/10318fc4e7c9cee9df6130826829baea3054a42b/Lib/mutatorMath/objects/mutator.py#L153-L163
def _collectOffAxisPoints(self): """ Return a dictionary with all off-axis locations. """ offAxis = {} for l, (value, deltaName) in self.items(): location = Location(l) name = location.isOnAxis() if name is None or name is False: ...
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Return a dictionary with all off-axis locations.
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python
train
pyQode/pyqode.core
pyqode/core/widgets/_pty.py
https://github.com/pyQode/pyqode.core/blob/a99ec6cd22d519394f613309412f8329dc4e90cb/pyqode/core/widgets/_pty.py#L61-L77
def slave_open(tty_name): """slave_open(tty_name) -> slave_fd Open the pty slave and acquire the controlling terminal, returning opened filedescriptor. Deprecated, use openpty() instead.""" result = os.open(tty_name, os.O_RDWR) try: from fcntl import ioctl, I_PUSH except ImportError...
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slave_open(tty_name) -> slave_fd Open the pty slave and acquire the controlling terminal, returning opened filedescriptor. Deprecated, use openpty() instead.
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python
train
rstoneback/pysat
pysat/instruments/pysat_sgp4.py
https://github.com/rstoneback/pysat/blob/4ae1afd80e15e4449397d39dce8c3e969c32c422/pysat/instruments/pysat_sgp4.py#L35-L67
def init(self): """ Adds custom calculations to orbit simulation. This routine is run once, and only once, upon instantiation. Adds quasi-dipole coordiantes, velocity calculation in ECEF coords, adds the attitude vectors of spacecraft assuming x is ram pointing and z is generally nadir, add...
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Adds custom calculations to orbit simulation. This routine is run once, and only once, upon instantiation. Adds quasi-dipole coordiantes, velocity calculation in ECEF coords, adds the attitude vectors of spacecraft assuming x is ram pointing and z is generally nadir, adds ionospheric parameters fro...
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python
train
bskinn/opan
opan/vpt2/repo.py
https://github.com/bskinn/opan/blob/0b1b21662df6abc971407a9386db21a8796fbfe5/opan/vpt2/repo.py#L437-L456
def has_param(self, param): """ .. todo:: has_param docstring """ # Imports from ..error import RepoError # Try to get the param; pass along all errors, except 'data' error # from RepoError retval = True try: self.get_param(param) ex...
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.. todo:: has_param docstring
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python
train
ungarj/tilematrix
tilematrix/_funcs.py
https://github.com/ungarj/tilematrix/blob/6f8cd3b85f61434a7ce5d7b635c3ad8f18ccb268/tilematrix/_funcs.py#L63-L78
def snap_bounds(bounds=None, tile_pyramid=None, zoom=None, pixelbuffer=0): """ Extend bounds to be aligned with union of tile bboxes. - bounds: (left, bottom, right, top) - tile_pyramid: a TilePyramid object - zoom: target zoom level - pixelbuffer: apply pixelbuffer """ bounds = Bounds(...
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Extend bounds to be aligned with union of tile bboxes. - bounds: (left, bottom, right, top) - tile_pyramid: a TilePyramid object - zoom: target zoom level - pixelbuffer: apply pixelbuffer
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python
train
MolSSI-BSE/basis_set_exchange
basis_set_exchange/references.py
https://github.com/MolSSI-BSE/basis_set_exchange/blob/e79110aaeb65f392ed5032420322dee3336948f7/basis_set_exchange/references.py#L55-L103
def reference_text(ref): '''Convert a single reference to plain text format Parameters ---------- ref : dict Information about a single reference ''' ref_wrap = textwrap.TextWrapper(initial_indent='', subsequent_indent=' ' * 8) s = '' if ref['type'] == 'unpublished': s...
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Convert a single reference to plain text format Parameters ---------- ref : dict Information about a single reference
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python
train
materialsproject/pymatgen
pymatgen/io/qchem/outputs.py
https://github.com/materialsproject/pymatgen/blob/4ca558cf72f8d5f8a1f21dfdfc0181a971c186da/pymatgen/io/qchem/outputs.py#L404-L430
def _read_optimized_geometry(self): """ Parses optimized XYZ coordinates. If not present, parses optimized Z-matrix. """ header_pattern = r"\*+\s+OPTIMIZATION\s+CONVERGED\s+\*+\s+\*+\s+Coordinates \(Angstroms\)\s+ATOM\s+X\s+Y\s+Z" table_pattern = r"\s+\d+\s+\w+\s+([\d\-\.]+)\s+([...
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Parses optimized XYZ coordinates. If not present, parses optimized Z-matrix.
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python
train
datacats/datacats
datacats/docker.py
https://github.com/datacats/datacats/blob/e4bae503efa997660fb3f34fe166699569653157/datacats/docker.py#L349-L367
def container_logs(name, tail, follow, timestamps): """ Wrapper for docker logs, attach commands. """ if follow: return _get_docker().attach( name, stdout=True, stderr=True, stream=True ) return _docker.logs( name, ...
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Wrapper for docker logs, attach commands.
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python
train
flo-compbio/genometools
genometools/expression/visualize/heatmap.py
https://github.com/flo-compbio/genometools/blob/dd962bb26d60a0f14ca14d8c9a4dd75768962c7d/genometools/expression/visualize/heatmap.py#L117-L413
def get_figure( self, emin=None, emax=None, width=800, height=400, margin_left=100, margin_bottom=60, margin_top=30, margin_right=0, colorbar_size=0.4, xaxis_label=None, yaxis_label=None, xaxis_nticks=None, yaxis_nticks=None, xtick_angl...
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Generate a plotly figure of the heatmap. Parameters ---------- emin : int, float, or None, optional The expression value corresponding to the lower end of the colorscale. If None, determine, automatically. [None] emax : int, float, or None, optional ...
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python
train
QuantEcon/QuantEcon.py
quantecon/gridtools.py
https://github.com/QuantEcon/QuantEcon.py/blob/26a66c552f2a73967d7efb6e1f4b4c4985a12643/quantecon/gridtools.py#L229-L263
def simplex_index(x, m, n): r""" Return the index of the point x in the lexicographic order of the integer points of the (m-1)-dimensional simplex :math:`\{x \mid x_0 + \cdots + x_{m-1} = n\}`. Parameters ---------- x : array_like(int, ndim=1) Integer point in the simplex, i.e., an ...
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r""" Return the index of the point x in the lexicographic order of the integer points of the (m-1)-dimensional simplex :math:`\{x \mid x_0 + \cdots + x_{m-1} = n\}`. Parameters ---------- x : array_like(int, ndim=1) Integer point in the simplex, i.e., an array of m nonnegative i...
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python
train
jahuth/litus
spikes.py
https://github.com/jahuth/litus/blob/712b016ea2dbb1cf0a30bfdbb0a136945a7b7c5e/spikes.py#L902-L970
def label_by_time(self,time_signals,label_names=[],time_units='ms',time_dimension=0,copy=True,backup_original_spike_times_to=None,**kwargs): """ creates a labeled spike data structure `time_signals` is list of lists (or matrix), containing a timestamp in the first c...
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creates a labeled spike data structure `time_signals` is list of lists (or matrix), containing a timestamp in the first column (or first element of each element) and indizes that are to be applied to the data in the remaining columns / elements. This funct...
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python
train
ktdreyer/txkoji
txkoji/connection.py
https://github.com/ktdreyer/txkoji/blob/a7de380f29f745bf11730b27217208f6d4da7733/txkoji/connection.py#L286-L304
def getTaskDescendents(self, task_id, **kwargs): """ Load all information about a task's descendents into Task classes. Calls "getTaskDescendents" XML-RPC (with request=True to get the full information.) :param task_id: ``int``, for example 12345, parent task ID :return...
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Load all information about a task's descendents into Task classes. Calls "getTaskDescendents" XML-RPC (with request=True to get the full information.) :param task_id: ``int``, for example 12345, parent task ID :returns: deferred that when fired returns a list of Task (Munch, ...
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python
train
ctuning/ck
ck/kernel.py
https://github.com/ctuning/ck/blob/7e009814e975f8742790d3106340088a46223714/ck/kernel.py#L1098-L1128
def gen_tmp_file(i): """ Input: { (suffix) - temp file suffix (prefix) - temp file prefix (remove_dir) - if 'yes', remove dir } Output: { return - return code = 0, if successful > 0...
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Input: { (suffix) - temp file suffix (prefix) - temp file prefix (remove_dir) - if 'yes', remove dir } Output: { return - return code = 0, if successful > 0, if error (error) ...
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python
train
Microsoft/LightGBM
python-package/lightgbm/basic.py
https://github.com/Microsoft/LightGBM/blob/8d2ec69f4f685b0ab1c4624d59ee2d3287bb3147/python-package/lightgbm/basic.py#L2436-L2503
def get_split_value_histogram(self, feature, bins=None, xgboost_style=False): """Get split value histogram for the specified feature. Parameters ---------- feature : int or string The feature name or index the histogram is calculated for. If int, interpreted as i...
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Get split value histogram for the specified feature. Parameters ---------- feature : int or string The feature name or index the histogram is calculated for. If int, interpreted as index. If string, interpreted as name. Note ---- ...
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python
train
andreikop/qutepart
qutepart/__init__.py
https://github.com/andreikop/qutepart/blob/109d76b239751318bcef06f39b2fbbf18687a40b/qutepart/__init__.py#L834-L840
def isComment(self, line, column): """Check if text at given position is a comment. Including block comments and here documents. If language is not known, or text is not parsed yet, ``False`` is returned """ return self._highlighter is not None and \ self._highlighter.isC...
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Check if text at given position is a comment. Including block comments and here documents. If language is not known, or text is not parsed yet, ``False`` is returned
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python
train
prompt-toolkit/ptpython
ptpython/python_input.py
https://github.com/prompt-toolkit/ptpython/blob/b1bba26a491324cd65e0ef46c7b818c4b88fd993/ptpython/python_input.py#L555-L582
def _create_application(self): """ Create an `Application` instance. """ return Application( input=self.input, output=self.output, layout=self.ptpython_layout.layout, key_bindings=merge_key_bindings([ load_python_bindings(se...
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Create an `Application` instance.
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python
train
vtkiorg/vtki
vtki/grid.py
https://github.com/vtkiorg/vtki/blob/5ccad7ae6d64a03e9594c9c7474c8aab3eb22dd1/vtki/grid.py#L369-L392
def _from_specs(self, dims, spacing=(1.0,1.0,1.0), origin=(0.0, 0.0, 0.0)): """ Create VTK image data directly from numpy arrays. A uniform grid is defined by the node spacings for each axis (uniform along each individual axis) and the number of nodes on each axis. These are rela...
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Create VTK image data directly from numpy arrays. A uniform grid is defined by the node spacings for each axis (uniform along each individual axis) and the number of nodes on each axis. These are relative to a specified origin (default is ``(0.0, 0.0, 0.0)``). Parameters -------...
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python
train
samastur/Impostor
impostor/backend.py
https://github.com/samastur/Impostor/blob/1a9b1cf1568d5d657b069af5fdf882f2d9bfefce/impostor/backend.py#L15-L30
def find_request(): ''' Inspect running environment for request object. There should be one, but don't rely on it. ''' frame = inspect.currentframe() request = None f = frame while not request and f: if 'request' in f.f_locals and isinstance(f.f_locals['request'], HttpRequest): request = f.f_locals['reque...
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python
train
FNNDSC/med2image
med2image/error.py
https://github.com/FNNDSC/med2image/blob/638d5d230de47608af20f9764acf8e382c2bf2ff/med2image/error.py#L31-L73
def report( callingClass, astr_key, ab_exitToOs=1, astr_header="" ): ''' Error handling. Based on the <astr_key>, error information is extracted from _dictErr and sent to log object. If <ab_exitToOs> is False, error is considered ...
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Error handling. Based on the <astr_key>, error information is extracted from _dictErr and sent to log object. If <ab_exitToOs> is False, error is considered non-fatal and processing can continue, otherwise processing terminates.
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python
train
peri-source/peri
peri/opt/optimize.py
https://github.com/peri-source/peri/blob/61beed5deaaf978ab31ed716e8470d86ba639867/peri/opt/optimize.py#L258-L328
def separate_particles_into_groups(s, region_size=40, bounds=None, doshift=False): """ Separates particles into convenient groups for optimization. Given a state, returns a list of groups of particles. Each group of particles are located near each other in the image. Every particle located ...
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Separates particles into convenient groups for optimization. Given a state, returns a list of groups of particles. Each group of particles are located near each other in the image. Every particle located in the desired region is contained in exactly 1 group. Parameters ---------- s : :class:`p...
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python
valid
tBuLi/symfit
symfit/core/support.py
https://github.com/tBuLi/symfit/blob/759dd3d1d4270510d651f40b23dd26b1b10eee83/symfit/core/support.py#L190-L200
def variables(names, **kwargs): """ Convenience function for the creation of multiple variables. For more control, consider using ``symbols(names, cls=Variable, **kwargs)`` directly. :param names: string of variable names. Example: x, y = variables('x, y') :param kwargs: kwargs to be passed...
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Convenience function for the creation of multiple variables. For more control, consider using ``symbols(names, cls=Variable, **kwargs)`` directly. :param names: string of variable names. Example: x, y = variables('x, y') :param kwargs: kwargs to be passed onto :func:`sympy.core.symbol.symbols` ...
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python
train
aio-libs/aiohttp
aiohttp/multipart.py
https://github.com/aio-libs/aiohttp/blob/9504fe2affaaff673fa4f3754c1c44221f8ba47d/aiohttp/multipart.py#L293-L312
async def read_chunk(self, size: int=chunk_size) -> bytes: """Reads body part content chunk of the specified size. size: chunk size """ if self._at_eof: return b'' if self._length: chunk = await self._read_chunk_from_length(size) else: ...
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Reads body part content chunk of the specified size. size: chunk size
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python
train
UCL-INGI/INGInious
inginious/agent/docker_agent/_docker_interface.py
https://github.com/UCL-INGI/INGInious/blob/cbda9a9c7f2b8e8eb1e6d7d51f0d18092086300c/inginious/agent/docker_agent/_docker_interface.py#L213-L222
def close_socket(self): """ Correctly closes the socket :return: """ try: self.docker_py_sock._sock.close() # pylint: disable=protected-access except AttributeError: pass self.docker_py_sock.close()
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Correctly closes the socket :return:
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python
train
bretth/woven
woven/environment.py
https://github.com/bretth/woven/blob/ec1da7b401a335f43129e7115fe7a4d145649f1e/woven/environment.py#L76-L150
def _parse_project_version(version=''): """ Returns the significant part of the version excluding the build The final forms returned can be major.minor major.minor stage (spaces will be replaced with '-') major.minor.stage major.minor-stage major.minorstage (eg 1.0rc1) m...
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Returns the significant part of the version excluding the build The final forms returned can be major.minor major.minor stage (spaces will be replaced with '-') major.minor.stage major.minor-stage major.minorstage (eg 1.0rc1) major.minor.maintenance major.minor.maintenance-s...
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python
train
blazelibs/blazeutils
blazeutils/spreadsheets.py
https://github.com/blazelibs/blazeutils/blob/c94476325146007553cbddeeb9ef83394756babf/blazeutils/spreadsheets.py#L63-L72
def workbook_to_reader(xlwt_wb): """ convert xlwt Workbook instance to an xlrd instance for reading """ _xlrd_required() fh = BytesIO() xlwt_wb.save(fh) # prep for reading fh.seek(0) return xlrd.open_workbook(file_contents=fh.read())
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convert xlwt Workbook instance to an xlrd instance for reading
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python
train
sony/nnabla
python/src/nnabla/parametric_functions.py
https://github.com/sony/nnabla/blob/aaf3d33b7cbb38f2a03aa754178ba8f7c8481320/python/src/nnabla/parametric_functions.py#L1732-L1755
def embed(inp, n_inputs, n_features, initializer=None, fix_parameters=False, apply_w=None): """ Embed. Embed slices a matrix/tensor with indexing array/tensor. Weights are initialized with :obj:`nnabla.initializer.UniformInitializer` within the range of :math:`-\\sqrt{3}` and :math:`\\sqrt{3}`. ...
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Embed. Embed slices a matrix/tensor with indexing array/tensor. Weights are initialized with :obj:`nnabla.initializer.UniformInitializer` within the range of :math:`-\\sqrt{3}` and :math:`\\sqrt{3}`. Args: x(~nnabla.Variable): [Integer] Indices with shape :math:`(I_0, ..., I_N)` n_inputs : num...
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python
train
pyblish/pyblish-qml
pyblish_qml/host.py
https://github.com/pyblish/pyblish-qml/blob/6095d18b2ec0afd0409a9b1a17e53b0658887283/pyblish_qml/host.py#L19-L43
def register_dispatch_wrapper(wrapper): """Register a dispatch wrapper for servers The wrapper must have this exact signature: (func, *args, **kwargs) """ signature = inspect.getargspec(wrapper) if any([len(signature.args) != 1, signature.varargs is None, signature...
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Register a dispatch wrapper for servers The wrapper must have this exact signature: (func, *args, **kwargs)
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python
train
thomasvandoren/bugzscout-py
bugzscout/ext/cli.py
https://github.com/thomasvandoren/bugzscout-py/blob/514528e958a97e0e7b36870037c5c69661511824/bugzscout/ext/cli.py#L63-L94
def _parse_args(): """Parse and return command line arguments.""" parser = argparse.ArgumentParser( description=__doc__, formatter_class=_CliFormatter) parser.add_argument('-v', '--verbose', action='store_true', help='Enable verbose output.') fb_group = parser.ad...
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Parse and return command line arguments.
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python
train