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KelSolaar/Umbra
umbra/components/factory/script_editor/script_editor.py
https://github.com/KelSolaar/Umbra/blob/66f45f08d9d723787f1191989f8b0dda84b412ce/umbra/components/factory/script_editor/script_editor.py#L1838-L1844
def __Script_Editor_Output_plainTextEdit_set_default_view_state(self): """ Sets the **Script_Editor_Output_plainTextEdit** Widget default View state. """ self.Script_Editor_Output_plainTextEdit.moveCursor(QTextCursor.End) self.Script_Editor_Output_plainTextEdit.ensureCursorVisib...
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Sets the **Script_Editor_Output_plainTextEdit** Widget default View state.
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python
train
fabric-bolt/fabric-bolt
fabric_bolt/projects/views.py
https://github.com/fabric-bolt/fabric-bolt/blob/0f434783026f1b9ce16a416fa496d76921fe49ca/fabric_bolt/projects/views.py#L162-L171
def form_valid(self, form): """After the form is valid lets let people know""" ret = super(ProjectCopy, self).form_valid(form) self.copy_relations() # Good to make note of that messages.add_message(self.request, messages.SUCCESS, 'Project %s copied' % self.object.name) ...
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After the form is valid lets let people know
[ "After", "the", "form", "is", "valid", "lets", "let", "people", "know" ]
python
train
eqcorrscan/EQcorrscan
eqcorrscan/core/match_filter.py
https://github.com/eqcorrscan/EQcorrscan/blob/3121b4aca801ee5d38f56ca297ce1c0f9515d9ff/eqcorrscan/core/match_filter.py#L743-L810
def read(self, filename=None, read_detection_catalog=True): """ Read a Party from a file. :type filename: str :param filename: File to read from - can be a list of files, and can contain wildcards. :type read_detection_catalog: bool :param read_de...
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Read a Party from a file. :type filename: str :param filename: File to read from - can be a list of files, and can contain wildcards. :type read_detection_catalog: bool :param read_detection_catalog: Whether to read the detection catalog or not, if Fa...
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python
train
LuqueDaniel/pybooru
pybooru/api_moebooru.py
https://github.com/LuqueDaniel/pybooru/blob/60cd5254684d293b308f0b11b8f4ac2dce101479/pybooru/api_moebooru.py#L309-L317
def wiki_create(self, title, body): """Action to lets you create a wiki page (Requires login) (UNTESTED). Parameters: title (str): The title of the wiki page. body (str): The body of the wiki page. """ params = {'wiki_page[title]': title, 'wiki_page[body]': body}...
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Action to lets you create a wiki page (Requires login) (UNTESTED). Parameters: title (str): The title of the wiki page. body (str): The body of the wiki page.
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python
train
GoogleCloudPlatform/compute-image-packages
packages/python-google-compute-engine/google_compute_engine/metadata_scripts/script_retriever.py
https://github.com/GoogleCloudPlatform/compute-image-packages/blob/53ea8cd069fb4d9a1984d1c167e54c133033f8da/packages/python-google-compute-engine/google_compute_engine/metadata_scripts/script_retriever.py#L170-L198
def _GetAttributeScripts(self, attribute_data, dest_dir): """Retrieve the scripts from attribute metadata. Args: attribute_data: dict, the contents of the attributes metadata. dest_dir: string, the path to a directory for storing metadata scripts. Returns: dict, a dictionary mapping meta...
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Retrieve the scripts from attribute metadata. Args: attribute_data: dict, the contents of the attributes metadata. dest_dir: string, the path to a directory for storing metadata scripts. Returns: dict, a dictionary mapping metadata keys to files storing scripts.
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python
train
liampauling/betfair
betfairlightweight/endpoints/historic.py
https://github.com/liampauling/betfair/blob/8479392eb4849c525d78d43497c32c0bb108e977/betfairlightweight/endpoints/historic.py#L22-L33
def get_my_data(self, session=None): """ Returns a list of data descriptions for data which has been purchased by the signed in user. :param requests.session session: Requests session object :rtype: dict """ params = clean_locals(locals()) method = 'GetMyData' ...
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Returns a list of data descriptions for data which has been purchased by the signed in user. :param requests.session session: Requests session object :rtype: dict
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python
train
keenlabs/KeenClient-Python
keen/api.py
https://github.com/keenlabs/KeenClient-Python/blob/266387c3376d1e000d117e17c45045ae3439d43f/keen/api.py#L113-L127
def post_events(self, events): """ Posts a single event to the Keen IO API. The write key must be set first. :param events: an Event to upload """ url = "{0}/{1}/projects/{2}/events".format(self.base_url, self.api_version, sel...
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Posts a single event to the Keen IO API. The write key must be set first. :param events: an Event to upload
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python
train
aiogram/aiogram
aiogram/types/chat.py
https://github.com/aiogram/aiogram/blob/2af930149ce2482547721e2c8755c10307295e48/aiogram/types/chat.py#L530-L539
async def typing(cls, sleep=None): """ Do typing :param sleep: sleep timeout :return: """ if isinstance(sleep, str): sleep = cls.calc_timeout(sleep) await cls._do(cls.TYPING, sleep)
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Do typing :param sleep: sleep timeout :return:
[ "Do", "typing" ]
python
train
tomplus/kubernetes_asyncio
kubernetes_asyncio/client/api/settings_v1alpha1_api.py
https://github.com/tomplus/kubernetes_asyncio/blob/f9ab15317ec921409714c7afef11aeb0f579985d/kubernetes_asyncio/client/api/settings_v1alpha1_api.py#L879-L903
def read_namespaced_pod_preset(self, name, namespace, **kwargs): # noqa: E501 """read_namespaced_pod_preset # noqa: E501 read the specified PodPreset # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True...
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read_namespaced_pod_preset # noqa: E501 read the specified PodPreset # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> thread = api.read_namespaced_pod_preset(name, namespace, async_req=True) ...
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python
train
saltstack/salt
salt/modules/schedule.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/schedule.py#L598-L650
def enable_job(name, **kwargs): ''' Enable a job in the minion's schedule CLI Example: .. code-block:: bash salt '*' schedule.enable_job job1 ''' ret = {'comment': [], 'result': True} if not name: ret['comment'] = 'Job name is required.' ret['result'] ...
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Enable a job in the minion's schedule CLI Example: .. code-block:: bash salt '*' schedule.enable_job job1
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python
train
bbangert/lettuce_webdriver
lettuce_webdriver/screenshot.py
https://github.com/bbangert/lettuce_webdriver/blob/d11f8531c43bb7150c316e0dc4ccd083617becf7/lettuce_webdriver/screenshot.py#L13-L22
def set_save_directory(base, source): """Sets the root save directory for saving screenshots. Screenshots will be saved in subdirectories under this directory by browser window size. """ root = os.path.join(base, source) if not os.path.isdir(root): os.makedirs(root) world.screensho...
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Sets the root save directory for saving screenshots. Screenshots will be saved in subdirectories under this directory by browser window size.
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python
train
Jajcus/pyxmpp2
pyxmpp2/ext/dataforms.py
https://github.com/Jajcus/pyxmpp2/blob/14a40a3950910a9cd008b55f0d8905aa0186ce18/pyxmpp2/ext/dataforms.py#L270-L299
def complete_xml_element(self, xmlnode, doc): """Complete the XML node with `self` content. :Parameters: - `xmlnode`: XML node with the element being built. It has already right name and namespace, but no attributes or content. - `doc`: document to which the elemen...
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Complete the XML node with `self` content. :Parameters: - `xmlnode`: XML node with the element being built. It has already right name and namespace, but no attributes or content. - `doc`: document to which the element belongs. :Types: - `xmlnode`: `libx...
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python
valid
boriel/zxbasic
arch/zx48k/optimizer.py
https://github.com/boriel/zxbasic/blob/23b28db10e41117805bdb3c0f78543590853b132/arch/zx48k/optimizer.py#L1654-L1662
def get_label_idx(self, label): """ Returns the index of a label. Returns None if not found. """ for i in range(len(self)): if self.mem[i].is_label and self.mem[i].inst == label: return i return None
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Returns the index of a label. Returns None if not found.
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python
train
themartorana/python-postmark
postmark/core.py
https://github.com/themartorana/python-postmark/blob/3087f6894ec2790e295fd59eba9c57da9de78d1c/postmark/core.py#L615-L620
def remove_message(self, message): ''' Remove a message from the batch ''' if message in self.__messages: self.__messages.remove(message)
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Remove a message from the batch
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python
train
jtwhite79/pyemu
pyemu/pst/pst_utils.py
https://github.com/jtwhite79/pyemu/blob/c504d8e7a4097cec07655a6318d275739bd8148a/pyemu/pst/pst_utils.py#L289-L304
def write_input_files(pst): """write parameter values to a model input files using a template files with current parameter values (stored in Pst.parameter_data.parval1). This is a simple implementation of what PEST does. It does not handle all the special cases, just a basic function...user beware ...
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write parameter values to a model input files using a template files with current parameter values (stored in Pst.parameter_data.parval1). This is a simple implementation of what PEST does. It does not handle all the special cases, just a basic function...user beware Parameters ---------- pst ...
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python
train
vladsaveliev/TargQC
targqc/utilz/jsontemplate/_jsontemplate.py
https://github.com/vladsaveliev/TargQC/blob/e887c36b2194dbd73c6ea32989b6cb84c6c0e58d/targqc/utilz/jsontemplate/_jsontemplate.py#L454-L463
def NewOrClause(self, pred_str): """ {.or ...} Can appear inside predicate blocks or section blocks, with slightly different meaning. """ if pred_str: pred = self._GetPredicate(pred_str, test_attr=False) else: pred = None self.current_section.NewOrClau...
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{.or ...} Can appear inside predicate blocks or section blocks, with slightly different meaning.
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python
train
tanghaibao/goatools
goatools/obo_parser.py
https://github.com/tanghaibao/goatools/blob/407682e573a108864a79031f8ca19ee3bf377626/goatools/obo_parser.py#L245-L251
def get_all_child_edges(self): """Return tuples for all child GO IDs, containing current GO ID and child GO ID.""" all_child_edges = set() for parent in self.children: all_child_edges.add((parent.item_id, self.item_id)) all_child_edges |= parent.get_all_child_edges() ...
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Return tuples for all child GO IDs, containing current GO ID and child GO ID.
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python
train
ktdreyer/txkoji
txkoji/connection.py
https://github.com/ktdreyer/txkoji/blob/a7de380f29f745bf11730b27217208f6d4da7733/txkoji/connection.py#L356-L370
def listTagged(self, *args, **kwargs): """ List builds tagged with a tag. Calls "listTagged" XML-RPC. :returns: deferred that when fired returns a list of Build objects. """ data = yield self.call('listTagged', *args, **kwargs) builds = [] for bdata in d...
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List builds tagged with a tag. Calls "listTagged" XML-RPC. :returns: deferred that when fired returns a list of Build objects.
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python
train
Dentosal/python-sc2
sc2/client.py
https://github.com/Dentosal/python-sc2/blob/608bd25f04e89d39cef68b40101d8e9a8a7f1634/sc2/client.py#L249-L270
async def query_available_abilities( self, units: Union[List[Unit], "Units"], ignore_resource_requirements: bool = False ) -> List[List[AbilityId]]: """ Query abilities of multiple units """ if not isinstance(units, list): """ Deprecated, accepting a single unit may be removed in...
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Query abilities of multiple units
[ "Query", "abilities", "of", "multiple", "units" ]
python
train
jazzband/django-authority
authority/permissions.py
https://github.com/jazzband/django-authority/blob/58e08483cdd91a6a69e8019dd2a2edf68531ae97/authority/permissions.py#L119-L138
def _user_perm_cache(self): """ cached_permissions will generate the cache in a lazy fashion. """ # Check to see if the cache has been primed. if not self.user: return {} cache_filled = getattr( self.user, '_authority_perm_cache_filled'...
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cached_permissions will generate the cache in a lazy fashion.
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python
train
nws-cip/zenconf
zenconf/merged_config.py
https://github.com/nws-cip/zenconf/blob/fc96706468c0741fb1b54b2eeb9f9225737e3e36/zenconf/merged_config.py#L47-L70
def walk_recursive(f, data): """ Recursively apply a function to all dicts in a nested dictionary :param f: Function to apply :param data: Dictionary (possibly nested) to recursively apply function to :return: """ results = {} if isinstance(data, list): return [walk_recursiv...
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Recursively apply a function to all dicts in a nested dictionary :param f: Function to apply :param data: Dictionary (possibly nested) to recursively apply function to :return:
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python
train
defunkt/pystache
pystache/parser.py
https://github.com/defunkt/pystache/blob/17a5dfdcd56eb76af731d141de395a7632a905b8/pystache/parser.py#L242-L338
def parse(self, template): """ Parse a template string starting at some index. This method uses the current tag delimiter. Arguments: template: a unicode string that is the template to parse. index: the index at which to start parsing. Returns: ...
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Parse a template string starting at some index. This method uses the current tag delimiter. Arguments: template: a unicode string that is the template to parse. index: the index at which to start parsing. Returns: a ParsedTemplate instance.
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python
train
Kautenja/nes-py
nes_py/_image_viewer.py
https://github.com/Kautenja/nes-py/blob/a113885198d418f38fcf24b8f79ac508975788c2/nes_py/_image_viewer.py#L50-L80
def show(self, frame): """ Show an array of pixels on the window. Args: frame (numpy.ndarray): the frame to show on the window Returns: None """ # check that the frame has the correct dimensions if len(frame.shape) != 3: raise...
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Show an array of pixels on the window. Args: frame (numpy.ndarray): the frame to show on the window Returns: None
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python
train
materialsproject/pymatgen
pymatgen/util/convergence.py
https://github.com/materialsproject/pymatgen/blob/4ca558cf72f8d5f8a1f21dfdfc0181a971c186da/pymatgen/util/convergence.py#L325-L357
def multi_curve_fit(xs, ys, verbose): """ fit multiple functions to the x, y data, return the best fit """ #functions = {exponential: p0_exponential, reciprocal: p0_reciprocal, single_reciprocal: p0_single_reciprocal} functions = { exponential: p0_exponential, reciprocal: p0_reciproc...
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fit multiple functions to the x, y data, return the best fit
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python
train
brocade/pynos
pynos/versions/ver_7/ver_7_1_0/yang/brocade_vswitch.py
https://github.com/brocade/pynos/blob/bd8a34e98f322de3fc06750827d8bbc3a0c00380/pynos/versions/ver_7/ver_7_1_0/yang/brocade_vswitch.py#L402-L414
def get_vnetwork_dvpgs_output_vnetwork_dvpgs_datacenter(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") get_vnetwork_dvpgs = ET.Element("get_vnetwork_dvpgs") config = get_vnetwork_dvpgs output = ET.SubElement(get_vnetwork_dvpgs, "output") ...
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Auto Generated Code
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python
train
horazont/aioxmpp
aioxmpp/pep/service.py
https://github.com/horazont/aioxmpp/blob/22a68e5e1d23f2a4dee470092adbd4672f9ef061/aioxmpp/pep/service.py#L326-L338
def close(self): """ Unclaim the PEP node and unregister the registered features. It is not necessary to call close if this claim is managed by :class:`~aioxmpp.pep.register_pep_node`. """ if self._closed: return self._closed = True self._pep...
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Unclaim the PEP node and unregister the registered features. It is not necessary to call close if this claim is managed by :class:`~aioxmpp.pep.register_pep_node`.
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python
train
openid/python-openid
openid/consumer/consumer.py
https://github.com/openid/python-openid/blob/f7e13536f0d1828d3cef5ae7a7b55cabadff37fc/openid/consumer/consumer.py#L687-L699
def _checkSetupNeeded(self, message): """Check an id_res message to see if it is a checkid_immediate cancel response. @raises SetupNeededError: if it is a checkid_immediate cancellation """ # In OpenID 1, we check to see if this is a cancel from # immediate mode by the p...
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Check an id_res message to see if it is a checkid_immediate cancel response. @raises SetupNeededError: if it is a checkid_immediate cancellation
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python
train
brianhie/scanorama
scanorama/scanorama.py
https://github.com/brianhie/scanorama/blob/57aafac87d07a8d682f57450165dd07f066ebb3c/scanorama/scanorama.py#L114-L169
def integrate(datasets_full, genes_list, batch_size=BATCH_SIZE, verbose=VERBOSE, ds_names=None, dimred=DIMRED, approx=APPROX, sigma=SIGMA, alpha=ALPHA, knn=KNN, geosketch=False, geosketch_max=20000, n_iter=1, union=False, hvg=None): """Integrate a list of data sets. Pa...
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Integrate a list of data sets. Parameters ---------- datasets_full : `list` of `scipy.sparse.csr_matrix` or of `numpy.ndarray` Data sets to integrate and correct. genes_list: `list` of `list` of `string` List of genes for each data set. batch_size: `int`, optional (default: `5000`) ...
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python
train
aio-libs/aioredis
aioredis/pubsub.py
https://github.com/aio-libs/aioredis/blob/e8c33e39558d4cc91cf70dde490d8b330c97dc2e/aioredis/pubsub.py#L313-L324
def iter(self, *, encoding=None, decoder=None): """Returns async iterator. Usage example: >>> async for ch, msg in mpsc.iter(): ... print(ch, msg) """ return _IterHelper(self, is_active=lambda r: not r._queue.exhausted, ...
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Returns async iterator. Usage example: >>> async for ch, msg in mpsc.iter(): ... print(ch, msg)
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python
train
reingart/pyafipws
utils.py
https://github.com/reingart/pyafipws/blob/ee87cfe4ac12285ab431df5fec257f103042d1ab/utils.py#L903-L919
def abrir_conf(config_file, debug=False): "Abrir el archivo de configuración (usar primer parámetro como ruta)" # en principio, usar el nombre de archivo predeterminado # si se pasa el archivo de configuración por parámetro, confirmar que exista # y descartar que sea una opción if len(sys.argv)>1: ...
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Abrir el archivo de configuración (usar primer parámetro como ruta)
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python
train
numenta/nupic
src/nupic/algorithms/fdrutilities.py
https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/algorithms/fdrutilities.py#L65-L94
def generateCoincMatrix(nCoinc=10, length=500, activity=50): """ Generate a coincidence matrix. This is used to generate random inputs to the temporal learner and to compare the predicted output against. It generates a matrix of nCoinc rows, each row has length 'length' and has a total of 'activity' bits on....
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Generate a coincidence matrix. This is used to generate random inputs to the temporal learner and to compare the predicted output against. It generates a matrix of nCoinc rows, each row has length 'length' and has a total of 'activity' bits on. Parameters: ----------------------------------------------- n...
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python
valid
timothydmorton/isochrones
isochrones/starmodel.py
https://github.com/timothydmorton/isochrones/blob/d84495573044c66db2fd6b959fe69e370757ea14/isochrones/starmodel.py#L559-L577
def mnest_basename(self): """Full path to basename """ if not hasattr(self, '_mnest_basename'): s = self.labelstring if s=='0_0': s = 'single' elif s=='0_0-0_1': s = 'binary' elif s=='0_0-0_1-0_2': s ...
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Full path to basename
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python
train
getfleety/coralillo
coralillo/fields.py
https://github.com/getfleety/coralillo/blob/9cac101738a0fa7c1106f129604c00ef703370e1/coralillo/fields.py#L173-L177
def delete(self, redis): ''' Deletes this field's value from the databse. Should be implemented in special cases ''' value = getattr(self.obj, self.name) redis.srem(self.key() + ':' + value, self.obj.id)
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Deletes this field's value from the databse. Should be implemented in special cases
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python
train
ClericPy/torequests
torequests/utils.py
https://github.com/ClericPy/torequests/blob/1793261688d7a47e1c3a0830d83f8552f5e3e5d9/torequests/utils.py#L622-L633
def search(self, string, default=None): """Use re.search to find the result :rtype: list""" default = default if default else [] result = [item[1] for item in self.container if item[0].search(string)] if self.ensure_mapping: assert len(result) < 2, "%s matches more t...
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Use re.search to find the result :rtype: list
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python
train
Neurosim-lab/netpyne
doc/source/code/HHCellFile.py
https://github.com/Neurosim-lab/netpyne/blob/edb67b5098b2e7923d55010ded59ad1bf75c0f18/doc/source/code/HHCellFile.py#L66-L78
def defineBiophysics(self): """Assign the membrane properties across the cell.""" # Insert active Hodgkin-Huxley current in the soma self.soma.insert('hh') self.soma.gnabar_hh = 0.12 # Sodium conductance in S/cm2 self.soma.gkbar_hh = 0.036 # Potassium conductance in S/cm2 ...
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Assign the membrane properties across the cell.
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python
train
noahbenson/neuropythy
neuropythy/util/core.py
https://github.com/noahbenson/neuropythy/blob/b588889f6db36ddb9602ae4a72c1c0d3f41586b2/neuropythy/util/core.py#L819-L845
def tangent(x, null=(-np.inf, np.inf), rtol=default_rtol, atol=default_atol): ''' tangent(x) is equivalent to tan(x) except that it also works on sparse arrays. The optional argument null (default, (-numpy.inf, numpy.inf)) may be specified to indicate what value(s) should be assigned when x == -pi/2 or...
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tangent(x) is equivalent to tan(x) except that it also works on sparse arrays. The optional argument null (default, (-numpy.inf, numpy.inf)) may be specified to indicate what value(s) should be assigned when x == -pi/2 or -pi/2. If only one number is given, then it is used for both values; otherwise the fi...
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python
train
open-homeautomation/pknx
knxip/ip.py
https://github.com/open-homeautomation/pknx/blob/a8aed8271563923c447aa330ba7c1c2927286f7a/knxip/ip.py#L129-L170
def from_body(cls, cemi): """Create a new CEMIMessage initialized from the given CEMI data.""" # TODO: check that length matches message = cls() message.code = cemi[0] offset = cemi[1] message.ctl1 = cemi[2 + offset] message.ctl2 = cemi[3 + offset] messa...
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Create a new CEMIMessage initialized from the given CEMI data.
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python
train
simoninireland/epyc
epyc/clusterlab.py
https://github.com/simoninireland/epyc/blob/b3b61007741a0ab3de64df89070a6f30de8ec268/epyc/clusterlab.py#L351-L365
def cancelPendingResultsFor( self, params ): """Cancel any results pending for experiments at the given point in the parameter space. :param params: the experimental parameters""" # grab the result job ids jobs = self.pendingResultsFor(params) if len(jo...
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Cancel any results pending for experiments at the given point in the parameter space. :param params: the experimental parameters
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python
train
QuantEcon/QuantEcon.py
quantecon/lss.py
https://github.com/QuantEcon/QuantEcon.py/blob/26a66c552f2a73967d7efb6e1f4b4c4985a12643/quantecon/lss.py#L160-L200
def simulate(self, ts_length=100, random_state=None): r""" Simulate a time series of length ts_length, first drawing .. math:: x_0 \sim N(\mu_0, \Sigma_0) Parameters ---------- ts_length : scalar(int), optional(default=100) The length of the sim...
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r""" Simulate a time series of length ts_length, first drawing .. math:: x_0 \sim N(\mu_0, \Sigma_0) Parameters ---------- ts_length : scalar(int), optional(default=100) The length of the simulation random_state : int or np.random.RandomState, o...
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python
train
phaethon/kamene
kamene/plist.py
https://github.com/phaethon/kamene/blob/11d4064844f4f68ac5d7546f5633ac7d02082914/kamene/plist.py#L479-L490
def summary(self, prn=None, lfilter=None): """prints a summary of each SndRcv packet pair prn: function to apply to each packet pair instead of lambda s, r: "%s ==> %s" % (s.summary(),r.summary()) lfilter: truth function to apply to each packet pair to decide whether it will be displayed""" for s, r...
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prints a summary of each SndRcv packet pair prn: function to apply to each packet pair instead of lambda s, r: "%s ==> %s" % (s.summary(),r.summary()) lfilter: truth function to apply to each packet pair to decide whether it will be displayed
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python
train
hthiery/python-fritzhome
pyfritzhome/fritzhome.py
https://github.com/hthiery/python-fritzhome/blob/c74bd178d08a305028f316f7da35202da3526f61/pyfritzhome/fritzhome.py#L492-L503
def get_hkr_state(self): """Get the thermostate state.""" self.update() try: return { 126.5: 'off', 127.0: 'on', self.eco_temperature: 'eco', self.comfort_temperature: 'comfort' }[self.target_temperature] ...
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Get the thermostate state.
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python
train
chaoss/grimoirelab-sortinghat
sortinghat/cmd/withdraw.py
https://github.com/chaoss/grimoirelab-sortinghat/blob/391cd37a75fea26311dc6908bc1c953c540a8e04/sortinghat/cmd/withdraw.py#L97-L125
def withdraw(self, uuid, organization, from_date=None, to_date=None): """Withdraw a unique identity from an organization. This method removes all the enrollments between the unique identity, identified by <uuid>, and <organization>. Both entities must exist on the registry before being ...
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Withdraw a unique identity from an organization. This method removes all the enrollments between the unique identity, identified by <uuid>, and <organization>. Both entities must exist on the registry before being deleted. When a period of time is given using either <from_date> and <to...
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python
train
knagra/farnsworth
workshift/views.py
https://github.com/knagra/farnsworth/blob/1b6589f0d9fea154f0a1e2231ed906764ed26d26/workshift/views.py#L62-L192
def add_workshift_context(request): """ Add workshift variables to all dictionaries passed to templates. """ if not request.user.is_authenticated(): return {} if Semester.objects.count() < 1: return { "WORKSHIFT_ENABLED": False, } # Current semester is for navbar no...
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Add workshift variables to all dictionaries passed to templates.
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python
train
spacetelescope/drizzlepac
drizzlepac/imageObject.py
https://github.com/spacetelescope/drizzlepac/blob/15bec3c929a6a869d9e71b9398ced43ede0620f1/drizzlepac/imageObject.py#L617-L629
def getskyimg(self,chip): """ Notes ===== Return an array representing the sky image for the detector. The value of the sky is what would actually be subtracted from the exposure by the skysub step. :units: electrons """ sci_chip = self._image[s...
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Notes ===== Return an array representing the sky image for the detector. The value of the sky is what would actually be subtracted from the exposure by the skysub step. :units: electrons
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python
train
pydata/xarray
xarray/plot/plot.py
https://github.com/pydata/xarray/blob/6d93a95d05bdbfc33fff24064f67d29dd891ab58/xarray/plot/plot.py#L823-L869
def pcolormesh(x, y, z, ax, infer_intervals=None, **kwargs): """ Pseudocolor plot of 2d DataArray Wraps :func:`matplotlib:matplotlib.pyplot.pcolormesh` """ # decide on a default for infer_intervals (GH781) x = np.asarray(x) if infer_intervals is None: if hasattr(ax, 'projection'): ...
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Pseudocolor plot of 2d DataArray Wraps :func:`matplotlib:matplotlib.pyplot.pcolormesh`
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python
train
jingw/pyhdfs
pyhdfs.py
https://github.com/jingw/pyhdfs/blob/b382b34f7cb28b41559f5be73102beb1732cd933/pyhdfs.py#L447-L462
def concat(self, target, sources, **kwargs): """Concat existing files together. For preconditions, see https://hadoop.apache.org/docs/current/hadoop-project-dist/hadoop-common/filesystem/filesystem.html#void_concatPath_p_Path_sources :param target: the path to the target destination. ...
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Concat existing files together. For preconditions, see https://hadoop.apache.org/docs/current/hadoop-project-dist/hadoop-common/filesystem/filesystem.html#void_concatPath_p_Path_sources :param target: the path to the target destination. :param sources: the paths to the sources to use f...
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python
train
bitesofcode/projexui
projexui/widgets/xorbrecordedit.py
https://github.com/bitesofcode/projexui/blob/f18a73bec84df90b034ca69b9deea118dbedfc4d/projexui/widgets/xorbrecordedit.py#L222-L248
def setRecord( self, record ): """ Sets the record instance for this widget to the inputed record. :param record | <orb.Table> """ self._record = record if ( not record ): return self.setModel(record.__class__...
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Sets the record instance for this widget to the inputed record. :param record | <orb.Table>
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python
train
bmwcarit/zubbi
zubbi/utils.py
https://github.com/bmwcarit/zubbi/blob/b99dfd6113c0351f13876f4172648c2eb63468ba/zubbi/utils.py#L44-L59
def prettydate(date): now = datetime.now(timezone.utc) """ Return the relative timeframe between the given date and now. e.g. 'Just now', 'x days ago', 'x hours ago', ... When the difference is greater than 7 days, the timestamp will be returned instead. """ diff = now - date # Sho...
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Return the relative timeframe between the given date and now. e.g. 'Just now', 'x days ago', 'x hours ago', ... When the difference is greater than 7 days, the timestamp will be returned instead.
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python
train
collectiveacuity/labPack
labpack/location/find.py
https://github.com/collectiveacuity/labPack/blob/52949ece35e72e3cc308f54d9ffa6bfbd96805b8/labpack/location/find.py#L296-L366
def update_positions(self): ''' a method to update the latest position of all users being tracked :return: dictionary with user_id keys and location/time dictionary values NOTE: self.players is updated with position details { 'us...
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a method to update the latest position of all users being tracked :return: dictionary with user_id keys and location/time dictionary values NOTE: self.players is updated with position details { 'user_id': { 'time': 0.0, ...
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python
train
signalfx/signalfx-python
signalfx/signalflow/ws.py
https://github.com/signalfx/signalfx-python/blob/650eb9a2b301bcc795e4e3a8c031574ade69849d/signalfx/signalflow/ws.py#L146-L155
def opened(self): """Handler called when the WebSocket connection is opened. The first thing to do then is to authenticate ourselves.""" request = { 'type': 'authenticate', 'token': self._token, 'userAgent': '{} ws4py/{}'.format(version.user_agent, ...
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Handler called when the WebSocket connection is opened. The first thing to do then is to authenticate ourselves.
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python
train
spacetelescope/stsci.tools
lib/stsci/tools/teal.py
https://github.com/spacetelescope/stsci.tools/blob/9a022503ad24ca54ce83331482dfa3ff6de9f403/lib/stsci/tools/teal.py#L343-L361
def execEmbCode(SCOPE, NAME, VAL, TEAL, codeStr): """ .cfgspc embedded code execution is done here, in a relatively confined space. The variables available to the code to be executed are: SCOPE, NAME, VAL, PARENT, TEAL The code string itself is expected to set a var named OUT """ ...
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.cfgspc embedded code execution is done here, in a relatively confined space. The variables available to the code to be executed are: SCOPE, NAME, VAL, PARENT, TEAL The code string itself is expected to set a var named OUT
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python
train
isislovecruft/python-gnupg
pretty_bad_protocol/_parsers.py
https://github.com/isislovecruft/python-gnupg/blob/784571449032e811587249743e183fc5e908a673/pretty_bad_protocol/_parsers.py#L883-L896
def _handle_status(self, key, value): """Parse a status code from the attached GnuPG process. :raises: :exc:`~exceptions.ValueError` if the status message is unknown. """ if key in ("USERID_HINT", "NEED_PASSPHRASE", "GET_HIDDEN", "SIGEXPIRED", "KEYEXPIRED", ...
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Parse a status code from the attached GnuPG process. :raises: :exc:`~exceptions.ValueError` if the status message is unknown.
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python
train
reingart/pyafipws
wslpg.py
https://github.com/reingart/pyafipws/blob/ee87cfe4ac12285ab431df5fec257f103042d1ab/wslpg.py#L1389-L1415
def AjustarLiquidacionUnificado(self): "Ajustar Liquidación Primaria de Granos" # limpiar estructuras no utilizadas (si no hay deducciones / retenciones) for k in ('ajusteDebito', 'ajusteCredito'): if not any(self.ajuste[k].values()): del self.ajuste[k] ...
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Ajustar Liquidación Primaria de Granos
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python
train
fantasticfears/kgekit
kgekit/data.py
https://github.com/fantasticfears/kgekit/blob/5e464e1fc3ae9c7e216f6dd94f879a967d065247/kgekit/data.py#L69-L105
def shrink_indexes_in_place(self, triples): """Uses a union find to find segment.""" _ent_roots = self.UnionFind(self._ent_id) _rel_roots = self.UnionFind(self._rel_id) for t in triples: _ent_roots.add(t.head) _ent_roots.add(t.tail) _rel_roots.add(t....
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Uses a union find to find segment.
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python
valid
alefnula/tea
tea/shell/__init__.py
https://github.com/alefnula/tea/blob/f5a0a724a425ec4f9dd2c7fe966ef06faf3a15a3/tea/shell/__init__.py#L276-L297
def move(source, destination): """Move a file or directory (recursively) to another location. If the destination is on our current file system, then simply use rename. Otherwise, copy source to the destination and then remove source. Args: source (str): Source file or directory (file or di...
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Move a file or directory (recursively) to another location. If the destination is on our current file system, then simply use rename. Otherwise, copy source to the destination and then remove source. Args: source (str): Source file or directory (file or directory to move). destination ...
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python
train
portantier/habu
habu/cli/cmd_cve_2018_9995.py
https://github.com/portantier/habu/blob/87091e389dc6332fe1b82830c22b2eefc55816f2/habu/cli/cmd_cve_2018_9995.py#L14-L67
def cmd_cve_2018_9995(ip, port, verbose): """Exploit the CVE-2018-9995 vulnerability, present on various DVR systems. Note: Based on the original code from Ezequiel Fernandez (@capitan_alfa). Reference: https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-9995 Example: \b $ python habu.cv...
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Exploit the CVE-2018-9995 vulnerability, present on various DVR systems. Note: Based on the original code from Ezequiel Fernandez (@capitan_alfa). Reference: https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-9995 Example: \b $ python habu.cve.2018-9995 82.202.102.42 [ { ...
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python
train
spyder-ide/spyder
spyder/plugins/editor/lsp/transport/main.py
https://github.com/spyder-ide/spyder/blob/f76836ce1b924bcc4efd3f74f2960d26a4e528e0/spyder/plugins/editor/lsp/transport/main.py#L102-L107
def restore(self): """Restore signal handlers to their original settings.""" signal.signal(signal.SIGINT, self.original_sigint) signal.signal(signal.SIGTERM, self.original_sigterm) if os.name == 'nt': signal.signal(signal.SIGBREAK, self.original_sigbreak)
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Restore signal handlers to their original settings.
[ "Restore", "signal", "handlers", "to", "their", "original", "settings", "." ]
python
train
fitnr/convertdate
convertdate/mayan.py
https://github.com/fitnr/convertdate/blob/e920f168a87f99183b0aa7290d6c3af222582d43/convertdate/mayan.py#L176-L194
def next_haab(month, jd): '''For a given haab month and a julian day count, find the next start of that month on or after the JDC''' if jd < EPOCH: raise IndexError("Input day is before Mayan epoch.") hday, hmonth = to_haab(jd) if hmonth == month: days = 1 - hday else: cou...
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For a given haab month and a julian day count, find the next start of that month on or after the JDC
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python
train
miLibris/flask-rest-jsonapi
flask_rest_jsonapi/resource.py
https://github.com/miLibris/flask-rest-jsonapi/blob/ecc8f2cd2b54cc0bfae7acd6cffcda0ba1140c43/flask_rest_jsonapi/resource.py#L235-L286
def patch(self, *args, **kwargs): """Update an object""" json_data = request.get_json() or {} qs = QSManager(request.args, self.schema) schema_kwargs = getattr(self, 'patch_schema_kwargs', dict()) schema_kwargs.update({'partial': True}) self.before_marshmallow(args, kwa...
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Update an object
[ "Update", "an", "object" ]
python
train
bcbio/bcbio-nextgen
bcbio/variation/qsnp.py
https://github.com/bcbio/bcbio-nextgen/blob/6a9348c0054ccd5baffd22f1bb7d0422f6978b20/bcbio/variation/qsnp.py#L31-L53
def run_qsnp(align_bams, items, ref_file, assoc_files, region=None, out_file=None): """Run qSNP calling on paired tumor/normal. """ if utils.file_exists(out_file): return out_file paired = get_paired_bams(align_bams, items) if paired.normal_bam: region_files = [] ...
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Run qSNP calling on paired tumor/normal.
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python
train
pettarin/ipapy
ipapy/ipachar.py
https://github.com/pettarin/ipapy/blob/ede4b3c40636f6eb90068369d31a2e75c7115324/ipapy/ipachar.py#L816-L824
def roundness(self, value): """ Set the roundness of the vowel. :param str value: the value to be set """ if (value is not None) and (not value in DG_V_ROUNDNESS): raise ValueError("Unrecognized value for roundness: '%s'" % value) self.__roundness = value
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Set the roundness of the vowel. :param str value: the value to be set
[ "Set", "the", "roundness", "of", "the", "vowel", "." ]
python
train
ARMmbed/yotta
yotta/lib/access_common.py
https://github.com/ARMmbed/yotta/blob/56bc1e56c602fa20307b23fe27518e9cd6c11af1/yotta/lib/access_common.py#L324-L346
def unpackTarballStream(stream, into_directory, hash={}, cache_key=None, origin_info=dict()): ''' Unpack a responses stream that contains a tarball into a directory. If a hash is provided, then it will be used as a cache key (for future requests you can try to retrieve the key value from the cache f...
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Unpack a responses stream that contains a tarball into a directory. If a hash is provided, then it will be used as a cache key (for future requests you can try to retrieve the key value from the cache first, before making the request)
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python
valid
Fantomas42/django-blog-zinnia
zinnia/admin/entry.py
https://github.com/Fantomas42/django-blog-zinnia/blob/b4949304b104a8e1a7a7a0773cbfd024313c3a15/zinnia/admin/entry.py#L294-L300
def close_trackbacks(self, request, queryset): """ Close the trackbacks for selected entries. """ queryset.update(trackback_enabled=False) self.message_user( request, _('Trackbacks are now closed for selected entries.'))
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Close the trackbacks for selected entries.
[ "Close", "the", "trackbacks", "for", "selected", "entries", "." ]
python
train
happyleavesaoc/python-limitlessled
limitlessled/group/commands/__init__.py
https://github.com/happyleavesaoc/python-limitlessled/blob/70307c2bf8c91430a99579d2ad18b228ec7a8488/limitlessled/group/commands/__init__.py#L5-L31
def command_set_factory(bridge, group_number, led_type): """ Create command set for controlling a specific led group. :param bridge: The bridge the leds are connected to. :param group_number: The group number. :param led_type: The type of the leds. :return: The created command set. """ f...
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Create command set for controlling a specific led group. :param bridge: The bridge the leds are connected to. :param group_number: The group number. :param led_type: The type of the leds. :return: The created command set.
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python
train
apache/airflow
airflow/hooks/mysql_hook.py
https://github.com/apache/airflow/blob/b69c686ad8a0c89b9136bb4b31767257eb7b2597/airflow/hooks/mysql_hook.py#L107-L117
def bulk_load(self, table, tmp_file): """ Loads a tab-delimited file into a database table """ conn = self.get_conn() cur = conn.cursor() cur.execute(""" LOAD DATA LOCAL INFILE '{tmp_file}' INTO TABLE {table} """.format(tmp_file=tmp_fil...
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Loads a tab-delimited file into a database table
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python
test
log2timeline/plaso
plaso/cli/helpers/database_config.py
https://github.com/log2timeline/plaso/blob/9c564698d2da3ffbe23607a3c54c0582ea18a6cc/plaso/cli/helpers/database_config.py#L22-L45
def AddArguments(cls, argument_group): """Adds command line arguments the helper supports to an argument group. This function takes an argument parser or an argument group object and adds to it all the command line arguments this helper supports. Args: argument_group (argparse._ArgumentGroup|arg...
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Adds command line arguments the helper supports to an argument group. This function takes an argument parser or an argument group object and adds to it all the command line arguments this helper supports. Args: argument_group (argparse._ArgumentGroup|argparse.ArgumentParser): argparse grou...
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python
train
jtwhite79/pyemu
pyemu/prototypes/moouu.py
https://github.com/jtwhite79/pyemu/blob/c504d8e7a4097cec07655a6318d275739bd8148a/pyemu/prototypes/moouu.py#L255-L289
def crowd_distance(self,obs_df): """determine the crowding distance for each candidate solution Parameters ---------- obs_df : pandas.DataFrame dataframe with columns of observation names and rows of realizations Returns ------- crowd_distance : pand...
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determine the crowding distance for each candidate solution Parameters ---------- obs_df : pandas.DataFrame dataframe with columns of observation names and rows of realizations Returns ------- crowd_distance : pandas.Series series with index of o...
[ "determine", "the", "crowding", "distance", "for", "each", "candidate", "solution" ]
python
train
mapbox/mapbox-sdk-py
mapbox/encoding.py
https://github.com/mapbox/mapbox-sdk-py/blob/72d19dbcf2d254a6ea08129a726471fd21f13023/mapbox/encoding.py#L20-L56
def read_points(features): """ Iterable of features to a sequence of point tuples Where "features" can be either GeoJSON mappings or objects implementing the geo_interface """ for feature in features: if isinstance(feature, (tuple, list)) and len(feature) == 2: yield feature ...
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Iterable of features to a sequence of point tuples Where "features" can be either GeoJSON mappings or objects implementing the geo_interface
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python
train
keans/lmnotify
lmnotify/lmnotify.py
https://github.com/keans/lmnotify/blob/b0a5282a582e5090852dc20fea8a135ca258d0d3/lmnotify/lmnotify.py#L599-L614
def alarm_set(self, time, wake_with_radio=False): """ set the alarm clock :param str time: time of the alarm (format: %H:%M:%S) :param bool wake_with_radio: if True, radio will be used for the alarm instead of beep sound """ # TODO: c...
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set the alarm clock :param str time: time of the alarm (format: %H:%M:%S) :param bool wake_with_radio: if True, radio will be used for the alarm instead of beep sound
[ "set", "the", "alarm", "clock" ]
python
train
carpedm20/ndrive
ndrive/models.py
https://github.com/carpedm20/ndrive/blob/ac58eaf8a8d46292ad752bb38047f65838b8ad2b/ndrive/models.py#L302-L334
def getDiskSpace(self, file_path, upload_path = '', overwrite = False): """getDiskSpace Args: file_path: Full path for a file you want to checkUpload upload_path: Ndrive path where you want to upload file ex) /Picture/ Returns: True: Possible...
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getDiskSpace Args: file_path: Full path for a file you want to checkUpload upload_path: Ndrive path where you want to upload file ex) /Picture/ Returns: True: Possible to upload a file with a given file_size False: Impossible to upload a ...
[ "getDiskSpace" ]
python
train
rwl/pylon
pyreto/auction.py
https://github.com/rwl/pylon/blob/916514255db1ae1661406f0283df756baf960d14/pyreto/auction.py#L106-L117
def _clearQuantities(self): """ Computes the cleared quantities for each offer/bid according to the dispatched output from the OPF solution. """ generators = [g for g in self.case.generators if not g.is_load] vLoads = [g for g in self.case.generators if g.is_load] for g ...
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Computes the cleared quantities for each offer/bid according to the dispatched output from the OPF solution.
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python
train
saltstack/salt
salt/utils/minions.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/utils/minions.py#L1026-L1030
def runner_check(self, auth_list, fun, args): ''' Check special API permissions ''' return self.spec_check(auth_list, fun, args, 'runner')
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Check special API permissions
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python
train
seleniumbase/SeleniumBase
seleniumbase/fixtures/base_case.py
https://github.com/seleniumbase/SeleniumBase/blob/62e5b43ee1f90a9ed923841bdd53b1b38358f43a/seleniumbase/fixtures/base_case.py#L1683-L1693
def create_folder(self, folder): """ Creates a folder of the given name if it doesn't already exist. """ if folder.endswith("/"): folder = folder[:-1] if len(folder) < 1: raise Exception("Minimum folder name length = 1.") if not os.path.exists(folder): ...
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Creates a folder of the given name if it doesn't already exist.
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python
train
zengbin93/zb
zb/crawlers/xinshipu.py
https://github.com/zengbin93/zb/blob/ccdb384a0b5801b459933220efcb71972c2b89a7/zb/crawlers/xinshipu.py#L20-L83
def get_recipe_detail(recipe_url): """从url中获取菜谱详细信息 :param recipe_url: str 菜谱url,如:https://www.xinshipu.com/zuofa/598775; https://www.xinshipu.com//zuofa/749342 :return:dict """ response = requests.get(recipe_url, headers=get_header()) html = BeautifulSoup(response.text, 'lxml')...
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从url中获取菜谱详细信息 :param recipe_url: str 菜谱url,如:https://www.xinshipu.com/zuofa/598775; https://www.xinshipu.com//zuofa/749342 :return:dict
[ "从url中获取菜谱详细信息" ]
python
train
Sanji-IO/sanji
sanji/model/__init__.py
https://github.com/Sanji-IO/sanji/blob/5c54cc2772bdfeae3337f785de1957237b828b34/sanji/model/__init__.py#L153-L174
def set(self, id, newObj): """Set a object Args: id (int): Target Object ID newObj (object): New object will be set Returns: Object: New object None: If specified object id is not found MultipleInvalid: If in...
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Set a object Args: id (int): Target Object ID newObj (object): New object will be set Returns: Object: New object None: If specified object id is not found MultipleInvalid: If input object is invaild
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python
train
juju/charm-helpers
charmhelpers/core/host.py
https://github.com/juju/charm-helpers/blob/aa785c40c3b7a8c69dbfbc7921d6b9f30142e171/charmhelpers/core/host.py#L859-L868
def get_nic_mtu(nic): """Return the Maximum Transmission Unit (MTU) for a network interface.""" cmd = ['ip', 'addr', 'show', nic] ip_output = subprocess.check_output(cmd).decode('UTF-8').split('\n') mtu = "" for line in ip_output: words = line.split() if 'mtu' in words: m...
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Return the Maximum Transmission Unit (MTU) for a network interface.
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python
train
rcsb/mmtf-python
mmtf/utils/decoder_utils.py
https://github.com/rcsb/mmtf-python/blob/899bb877ca1b32a9396803d38c5bf38a2520754e/mmtf/utils/decoder_utils.py#L150-L159
def add_entity_info( data_api, struct_inflator): """Add the entity info to the structure. :param data_api the interface to the decoded data :param struct_inflator the interface to put the data into the client object """ for entity in data_api.entity_list: struct_inflator.set_entity_info(enti...
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Add the entity info to the structure. :param data_api the interface to the decoded data :param struct_inflator the interface to put the data into the client object
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python
train
manns/pyspread
pyspread/src/model/model.py
https://github.com/manns/pyspread/blob/0e2fd44c2e0f06605efc3058c20a43a8c1f9e7e0/pyspread/src/model/model.py#L1360-L1368
def reload_modules(self): """Reloads modules that are available in cells""" import src.lib.charts as charts from src.gui.grid_panels import vlcpanel_factory modules = [charts, bz2, base64, re, ast, sys, wx, numpy, datetime] for module in modules: reload(module)
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Reloads modules that are available in cells
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python
train
BD2KGenomics/toil-scripts
src/toil_scripts/rnaseq_unc/rnaseq_unc_pipeline.py
https://github.com/BD2KGenomics/toil-scripts/blob/f878d863defcdccaabb7fe06f991451b7a198fb7/src/toil_scripts/rnaseq_unc/rnaseq_unc_pipeline.py#L578-L604
def bamsort_and_index(job, job_vars): """ Sorts bam file and produces index file job_vars: tuple Tuple of dictionaries: input_args and ids """ # Unpack variables input_args, ids = job_vars work_dir = job.fileStore.getLocalTempDir() sudo = input_args['sudo'] # I/O rg_alignmen...
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Sorts bam file and produces index file job_vars: tuple Tuple of dictionaries: input_args and ids
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python
train
juju/charm-helpers
charmhelpers/contrib/database/mysql.py
https://github.com/juju/charm-helpers/blob/aa785c40c3b7a8c69dbfbc7921d6b9f30142e171/charmhelpers/contrib/database/mysql.py#L299-L370
def set_mysql_password(self, username, password): """Update a mysql password for the provided username changing the leader settings To update root's password pass `None` in the username """ if username is None: username = 'root' # get root password via lead...
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Update a mysql password for the provided username changing the leader settings To update root's password pass `None` in the username
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python
train
guaix-ucm/pyemir
emirdrp/util/sextractor.py
https://github.com/guaix-ucm/pyemir/blob/fef6bbabcb13f80123cafd1800a0f508a3c21702/emirdrp/util/sextractor.py#L419-L476
def setup(self, path=None): """ Look for SExtractor program ('sextractor', or 'sex'). If a full path is provided, only this path is checked. Raise a SExtractorException if it failed. Return program and version if it succeed. """ # -- Finding sextractor program an...
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Look for SExtractor program ('sextractor', or 'sex'). If a full path is provided, only this path is checked. Raise a SExtractorException if it failed. Return program and version if it succeed.
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python
train
theislab/scvelo
scvelo/preprocessing/utils.py
https://github.com/theislab/scvelo/blob/c7a96d70edfe705e86bf364434a9527d4fd8df11/scvelo/preprocessing/utils.py#L417-L423
def recipe_velocity(adata, min_counts=3, min_counts_u=3, n_top_genes=None, n_pcs=30, n_neighbors=30, log=True, copy=False): """Runs pp.filter_and_normalize() and pp.moments() """ from .moments import moments filter_and_normalize(adata, min_counts=min_counts, min_counts_u=min_counts_u, n_top_genes=n_top_...
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Runs pp.filter_and_normalize() and pp.moments()
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python
train
zhanglab/psamm
psamm/balancecheck.py
https://github.com/zhanglab/psamm/blob/dc427848c4f9d109ca590f0afa024c63b685b3f4/psamm/balancecheck.py#L65-L88
def reaction_formula(reaction, compound_formula): """Calculate formula compositions for both sides of the specified reaction. If the compounds in the reaction all have formula, then calculate and return the chemical compositions for both sides, otherwise return `None`. Args: reaction: :class:`...
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Calculate formula compositions for both sides of the specified reaction. If the compounds in the reaction all have formula, then calculate and return the chemical compositions for both sides, otherwise return `None`. Args: reaction: :class:`psamm.reaction.Reaction`. compound_formula: a map...
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python
train
etingof/pysnmp
pysnmp/smi/mibs/SNMPv2-TC.py
https://github.com/etingof/pysnmp/blob/cde062dd42f67dfd2d7686286a322d40e9c3a4b7/pysnmp/smi/mibs/SNMPv2-TC.py#L120-L248
def prettyOut(self, value): # override asn1 type method """Implements DISPLAY-HINT evaluation""" if self.displayHint and (self.__integer.isSuperTypeOf(self, matchConstraints=False) and not self.getNamedValues() or self.__unsigned32.isSuperTypeOf(self, matchConstraints=F...
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Implements DISPLAY-HINT evaluation
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python
train
Qiskit/qiskit-terra
qiskit/transpiler/layout.py
https://github.com/Qiskit/qiskit-terra/blob/d4f58d903bc96341b816f7c35df936d6421267d1/qiskit/transpiler/layout.py#L118-L121
def is_virtual(value): """Checks if value has the format of a virtual qubit """ return value is None or isinstance(value, tuple) and len(value) == 2 and isinstance( value[0], Register) and isinstance(value[1], int)
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Checks if value has the format of a virtual qubit
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python
test
sdispater/pendulum
pendulum/date.py
https://github.com/sdispater/pendulum/blob/94d28b0d3cb524ae02361bd1ed7ea03e2e655e4e/pendulum/date.py#L59-L67
def day_of_year(self): """ Returns the day of the year (1-366). :rtype: int """ k = 1 if self.is_leap_year() else 2 return (275 * self.month) // 9 - k * ((self.month + 9) // 12) + self.day - 30
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Returns the day of the year (1-366). :rtype: int
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python
train
EnergieID/smappy
smappy/smappy.py
https://github.com/EnergieID/smappy/blob/1ada3abc9a51c76205c072369258f6f4f4e8fd0f/smappy/smappy.py#L314-L333
def actuator_on(self, service_location_id, actuator_id, duration=None): """ Turn actuator on Parameters ---------- service_location_id : int actuator_id : int duration : int, optional 300,900,1800 or 3600 , specifying the time in seconds the actuator ...
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Turn actuator on Parameters ---------- service_location_id : int actuator_id : int duration : int, optional 300,900,1800 or 3600 , specifying the time in seconds the actuator should be turned on. Any other value results in turning on for an un...
[ "Turn", "actuator", "on" ]
python
train
core/uricore
uricore/wkz_urls.py
https://github.com/core/uricore/blob/dc5ef4be7bd93da4c39e5c1cbd1ae4f3ad3f1f2a/uricore/wkz_urls.py#L383-L394
def url_quote(s, charset='utf-8', safe='/:'): """URL encode a single string with a given encoding. :param s: the string to quote. :param charset: the charset to be used. :param safe: an optional sequence of safe characters. """ if isinstance(s, unicode): s = s.encode(charset) elif n...
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URL encode a single string with a given encoding. :param s: the string to quote. :param charset: the charset to be used. :param safe: an optional sequence of safe characters.
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python
train
collectiveacuity/labPack
labpack/records/time.py
https://github.com/collectiveacuity/labPack/blob/52949ece35e72e3cc308f54d9ffa6bfbd96805b8/labpack/records/time.py#L181-L206
def fromEpoch(cls, epoch_time): ''' a method for constructing a labDT object from epoch timestamp :param epoch_time: number with epoch timestamp info :return: labDT object ''' # validate input title = 'Epoch time input for labDT.fromEpoch' if not isinstan...
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a method for constructing a labDT object from epoch timestamp :param epoch_time: number with epoch timestamp info :return: labDT object
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python
train
shoebot/shoebot
shoebot/data/geometry.py
https://github.com/shoebot/shoebot/blob/d554c1765c1899fa25727c9fc6805d221585562b/shoebot/data/geometry.py#L157-L174
def point_in_polygon(points, x, y): """ Ray casting algorithm. Determines how many times a horizontal ray starting from the point intersects with the sides of the polygon. If it is an even number of times, the point is outside, if odd, inside. The algorithm does not always repor...
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Ray casting algorithm. Determines how many times a horizontal ray starting from the point intersects with the sides of the polygon. If it is an even number of times, the point is outside, if odd, inside. The algorithm does not always report correctly when the point is very close to t...
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python
valid
eng-tools/sfsimodels
sfsimodels/models/time.py
https://github.com/eng-tools/sfsimodels/blob/65a690ca440d61307f5a9b8478e4704f203a5925/sfsimodels/models/time.py#L64-L86
def time_indices(npts, dt, start, end, index): """ Determine the new start and end indices of the time series. :param npts: Number of points in original time series :param dt: Time step of original time series :param start: int or float, optional, New start point :param end: int or float, optio...
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Determine the new start and end indices of the time series. :param npts: Number of points in original time series :param dt: Time step of original time series :param start: int or float, optional, New start point :param end: int or float, optional, New end point :param index: bool, optional, if Fal...
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python
train
saltstack/salt
salt/modules/zabbix.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/zabbix.py#L1161-L1223
def host_exists(host=None, hostid=None, name=None, node=None, nodeids=None, **kwargs): ''' Checks if at least one host that matches the given filter criteria exists. .. versionadded:: 2016.3.0 :param host: technical name of the host :param hostids: Hosts (hostids) to delete. :param name: visib...
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Checks if at least one host that matches the given filter criteria exists. .. versionadded:: 2016.3.0 :param host: technical name of the host :param hostids: Hosts (hostids) to delete. :param name: visible name of the host :param node: name of the node the hosts must belong to (zabbix API < 2.4) ...
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python
train
konstantint/matplotlib-venn
matplotlib_venn/_arc.py
https://github.com/konstantint/matplotlib-venn/blob/c26796c9925bdac512edf48387452fbd1848c791/matplotlib_venn/_arc.py#L417-L428
def reversed(self): ''' Returns a copy of this arc, with the direction flipped. >>> Arc((0, 0), 1, 0, 360, True).reversed() Arc([0.000, 0.000], 1.000, 360.000, 0.000, False, degrees=360.000) >>> Arc((0, 0), 1, 175, -175, True).reversed() Arc([0.000, 0.000],...
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Returns a copy of this arc, with the direction flipped. >>> Arc((0, 0), 1, 0, 360, True).reversed() Arc([0.000, 0.000], 1.000, 360.000, 0.000, False, degrees=360.000) >>> Arc((0, 0), 1, 175, -175, True).reversed() Arc([0.000, 0.000], 1.000, -175.000, 175.000, False, ...
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python
train
ejeschke/ginga
ginga/ImageView.py
https://github.com/ejeschke/ginga/blob/a78c893ec6f37a837de851947e9bb4625c597915/ginga/ImageView.py#L2148-L2157
def set_scale_base_xy(self, scale_x_base, scale_y_base): """Set stretch factors. Parameters ---------- scale_x_base, scale_y_base : float Stretch factors for X and Y, respectively. """ self.t_.set(scale_x_base=scale_x_base, scale_y_base=scale_y_base)
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Set stretch factors. Parameters ---------- scale_x_base, scale_y_base : float Stretch factors for X and Y, respectively.
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python
train
gwastro/pycbc
pycbc/inference/io/base_hdf.py
https://github.com/gwastro/pycbc/blob/7a64cdd104d263f1b6ea0b01e6841837d05a4cb3/pycbc/inference/io/base_hdf.py#L787-L809
def write_kwargs_to_attrs(cls, attrs, **kwargs): """Writes the given keywords to the given ``attrs``. If any keyword argument points to a dict, the keyword will point to a list of the dict's keys. Each key is then written to the attrs with its corresponding value. Parameters ...
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Writes the given keywords to the given ``attrs``. If any keyword argument points to a dict, the keyword will point to a list of the dict's keys. Each key is then written to the attrs with its corresponding value. Parameters ---------- attrs : an HDF attrs Th...
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python
train
jeffh/sniffer
sniffer/runner.py
https://github.com/jeffh/sniffer/blob/8e4c3e77743aef08109ea0225b4a6536d4e60270/sniffer/runner.py#L68-L76
def absorb_args(self, func): """ Calls a function without any arguments. The returned caller function accepts any arguments (and throws them away). """ @wraps(func) def wrapper(*args, **kwargs): return func() return wrapper
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Calls a function without any arguments. The returned caller function accepts any arguments (and throws them away).
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python
train
portantier/habu
habu/cli/cmd_whois_ip.py
https://github.com/portantier/habu/blob/87091e389dc6332fe1b82830c22b2eefc55816f2/habu/cli/cmd_whois_ip.py#L12-L36
def cmd_whois_ip(ip): """Simple whois client to check IP addresses (IPv4 and IPv6). Example: \b $ habu.whois.ip 8.8.8.8 { "nir": null, "asn_registry": "arin", "asn": "15169", "asn_cidr": "8.8.8.0/24", "asn_country_code": "US", "asn_date": "1992-12-01...
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Simple whois client to check IP addresses (IPv4 and IPv6). Example: \b $ habu.whois.ip 8.8.8.8 { "nir": null, "asn_registry": "arin", "asn": "15169", "asn_cidr": "8.8.8.0/24", "asn_country_code": "US", "asn_date": "1992-12-01", "asn_description":...
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python
train
osrg/ryu
ryu/lib/lacplib.py
https://github.com/osrg/ryu/blob/6f906e72c92e10bd0264c9b91a2f7bb85b97780c/ryu/lib/lacplib.py#L73-L94
def add(self, dpid, ports): """add a setting of a bonding i/f. 'add' method takes the corresponding args in this order. ========= ===================================================== Attribute Description ========= ===================================================== d...
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add a setting of a bonding i/f. 'add' method takes the corresponding args in this order. ========= ===================================================== Attribute Description ========= ===================================================== dpid datapath id. ports ...
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python
train
mushkevych/scheduler
process_starter.py
https://github.com/mushkevych/scheduler/blob/6740331360f49083c208085fb5a60ce80ebf418b/process_starter.py#L10-L47
def get_class(kls): """ :param kls - string of fully identified starter function or starter method path for instance: - workers.abstract_worker.AbstractWorker.start - workers.example_script_worker.main :return tuple (type, object, starter) for instance: - (FunctionType, <function_ma...
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python
train
LionelAuroux/pyrser
pyrser/type_system/scope.py
https://github.com/LionelAuroux/pyrser/blob/f153a97ef2b6bf915a1ed468c0252a9a59b754d5/pyrser/type_system/scope.py#L180-L184
def union(self, sig: Scope) -> Scope: """ Create a new Set produce by the union of 2 Set """ new = Scope(sig=self._hsig.values(), state=self.state) new |= sig return new
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Create a new Set produce by the union of 2 Set
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python
test