repo stringlengths 7 54 | path stringlengths 4 192 | url stringlengths 87 284 | code stringlengths 78 104k | code_tokens list | docstring stringlengths 1 46.9k | docstring_tokens list | language stringclasses 1
value | partition stringclasses 3
values |
|---|---|---|---|---|---|---|---|---|
TestInABox/stackInABox | stackinabox/stack.py | https://github.com/TestInABox/stackInABox/blob/63ee457401e9a88d987f85f513eb512dcb12d984/stackinabox/stack.py#L226-L268 | def call(self, method, request, uri, headers):
"""Make a call into the thread's StackInABox instance.
:param method: HTTP Method (e.g GET, POST)
:param request: a Request object containing the request data
:param uri: the URI of the request submitted with the method
:param heade... | [
"def",
"call",
"(",
"self",
",",
"method",
",",
"request",
",",
"uri",
",",
"headers",
")",
":",
"logger",
".",
"debug",
"(",
"'StackInABox({0}): Received call to {1} - {2}'",
".",
"format",
"(",
"self",
".",
"__id",
",",
"method",
",",
"uri",
")",
")",
... | Make a call into the thread's StackInABox instance.
:param method: HTTP Method (e.g GET, POST)
:param request: a Request object containing the request data
:param uri: the URI of the request submitted with the method
:param headers: the return headers in a Case-Insensitive dict
... | [
"Make",
"a",
"call",
"into",
"the",
"thread",
"s",
"StackInABox",
"instance",
"."
] | python | train |
inveniosoftware/invenio-accounts | invenio_accounts/context_processors/jwt.py | https://github.com/inveniosoftware/invenio-accounts/blob/b0d2f0739b00dbefea22ca15d7d374a1b4a63aec/invenio_accounts/context_processors/jwt.py#L17-L36 | def jwt_proccessor():
"""Context processor for jwt."""
def jwt():
"""Context processor function to generate jwt."""
token = current_accounts.jwt_creation_factory()
return Markup(
render_template(
current_app.config['ACCOUNTS_JWT_DOM_TOKEN_TEMPLATE'],
... | [
"def",
"jwt_proccessor",
"(",
")",
":",
"def",
"jwt",
"(",
")",
":",
"\"\"\"Context processor function to generate jwt.\"\"\"",
"token",
"=",
"current_accounts",
".",
"jwt_creation_factory",
"(",
")",
"return",
"Markup",
"(",
"render_template",
"(",
"current_app",
"."... | Context processor for jwt. | [
"Context",
"processor",
"for",
"jwt",
"."
] | python | train |
HazyResearch/metal | metal/contrib/visualization/analysis.py | https://github.com/HazyResearch/metal/blob/c24e3772e25ac6d0917b8b7af4c1bcb92928f84a/metal/contrib/visualization/analysis.py#L10-L19 | def view_label_matrix(L, colorbar=True):
"""Display an [n, m] matrix of labels"""
L = L.todense() if sparse.issparse(L) else L
plt.imshow(L, aspect="auto")
plt.title("Label Matrix")
if colorbar:
labels = sorted(np.unique(np.asarray(L).reshape(-1, 1).squeeze()))
boundaries = np.array(... | [
"def",
"view_label_matrix",
"(",
"L",
",",
"colorbar",
"=",
"True",
")",
":",
"L",
"=",
"L",
".",
"todense",
"(",
")",
"if",
"sparse",
".",
"issparse",
"(",
"L",
")",
"else",
"L",
"plt",
".",
"imshow",
"(",
"L",
",",
"aspect",
"=",
"\"auto\"",
")... | Display an [n, m] matrix of labels | [
"Display",
"an",
"[",
"n",
"m",
"]",
"matrix",
"of",
"labels"
] | python | train |
jsmits/django-logutils | django_logutils/middleware.py | https://github.com/jsmits/django-logutils/blob/e88f6e0a08c6f3df9e61f96cfb6cd79bc5ea8a88/django_logutils/middleware.py#L17-L46 | def create_log_dict(request, response):
"""
Create a dictionary with logging data.
"""
remote_addr = request.META.get('REMOTE_ADDR')
if remote_addr in getattr(settings, 'INTERNAL_IPS', []):
remote_addr = request.META.get(
'HTTP_X_FORWARDED_FOR') or remote_addr
user_email = "... | [
"def",
"create_log_dict",
"(",
"request",
",",
"response",
")",
":",
"remote_addr",
"=",
"request",
".",
"META",
".",
"get",
"(",
"'REMOTE_ADDR'",
")",
"if",
"remote_addr",
"in",
"getattr",
"(",
"settings",
",",
"'INTERNAL_IPS'",
",",
"[",
"]",
")",
":",
... | Create a dictionary with logging data. | [
"Create",
"a",
"dictionary",
"with",
"logging",
"data",
"."
] | python | train |
gem/oq-engine | openquake/commonlib/shapefileparser.py | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/commonlib/shapefileparser.py#L543-L550 | def set_simple_fault_geometry_3D(w, src):
"""
Builds a 3D polygon from a node instance
"""
assert "simpleFaultSource" in src.tag
geometry_node = src.nodes[get_taglist(src).index("simpleFaultGeometry")]
fault_attrs = parse_simple_fault_geometry(geometry_node)
build_polygon_from_fault_attrs(w,... | [
"def",
"set_simple_fault_geometry_3D",
"(",
"w",
",",
"src",
")",
":",
"assert",
"\"simpleFaultSource\"",
"in",
"src",
".",
"tag",
"geometry_node",
"=",
"src",
".",
"nodes",
"[",
"get_taglist",
"(",
"src",
")",
".",
"index",
"(",
"\"simpleFaultGeometry\"",
")"... | Builds a 3D polygon from a node instance | [
"Builds",
"a",
"3D",
"polygon",
"from",
"a",
"node",
"instance"
] | python | train |
mitsei/dlkit | dlkit/json_/repository/managers.py | https://github.com/mitsei/dlkit/blob/445f968a175d61c8d92c0f617a3c17dc1dc7c584/dlkit/json_/repository/managers.py#L743-L758 | def get_asset_repository_assignment_session(self):
"""Gets the session for assigning asset to repository mappings.
return: (osid.repository.AssetRepositoryAssignmentSession) - an
``AssetRepositoryAsignmentSession``
raise: OperationFailed - unable to complete request
rai... | [
"def",
"get_asset_repository_assignment_session",
"(",
"self",
")",
":",
"if",
"not",
"self",
".",
"supports_asset_repository_assignment",
"(",
")",
":",
"raise",
"errors",
".",
"Unimplemented",
"(",
")",
"# pylint: disable=no-member",
"return",
"sessions",
".",
"Asse... | Gets the session for assigning asset to repository mappings.
return: (osid.repository.AssetRepositoryAssignmentSession) - an
``AssetRepositoryAsignmentSession``
raise: OperationFailed - unable to complete request
raise: Unimplemented -
``supports_asset_reposito... | [
"Gets",
"the",
"session",
"for",
"assigning",
"asset",
"to",
"repository",
"mappings",
"."
] | python | train |
ssato/python-anyconfig | src/anyconfig/schema.py | https://github.com/ssato/python-anyconfig/blob/f2f4fb8d8e232aadea866c202e1dd7a5967e2877/src/anyconfig/schema.py#L65-L81 | def _validate(data, schema, ac_schema_safe=True, **options):
"""
See the descritpion of :func:`validate` for more details of parameters and
return value.
Validate target object 'data' with given schema object.
"""
try:
jsonschema.validate(data, schema, **options)
except (jsonschema... | [
"def",
"_validate",
"(",
"data",
",",
"schema",
",",
"ac_schema_safe",
"=",
"True",
",",
"*",
"*",
"options",
")",
":",
"try",
":",
"jsonschema",
".",
"validate",
"(",
"data",
",",
"schema",
",",
"*",
"*",
"options",
")",
"except",
"(",
"jsonschema",
... | See the descritpion of :func:`validate` for more details of parameters and
return value.
Validate target object 'data' with given schema object. | [
"See",
"the",
"descritpion",
"of",
":",
"func",
":",
"validate",
"for",
"more",
"details",
"of",
"parameters",
"and",
"return",
"value",
"."
] | python | train |
Nic30/hwt | hwt/serializer/resourceAnalyzer/utils.py | https://github.com/Nic30/hwt/blob/8cbb399e326da3b22c233b98188a9d08dec057e6/hwt/serializer/resourceAnalyzer/utils.py#L39-L52 | def registerMUX(self, stm: Union[HdlStatement, Operator], sig: RtlSignal,
inputs_cnt: int):
"""
mux record is in format (self.MUX, n, m)
where n is number of bits of this mux
and m is number of possible inputs
"""
assert inputs_cnt > 1
res = se... | [
"def",
"registerMUX",
"(",
"self",
",",
"stm",
":",
"Union",
"[",
"HdlStatement",
",",
"Operator",
"]",
",",
"sig",
":",
"RtlSignal",
",",
"inputs_cnt",
":",
"int",
")",
":",
"assert",
"inputs_cnt",
">",
"1",
"res",
"=",
"self",
".",
"resources",
"w",
... | mux record is in format (self.MUX, n, m)
where n is number of bits of this mux
and m is number of possible inputs | [
"mux",
"record",
"is",
"in",
"format",
"(",
"self",
".",
"MUX",
"n",
"m",
")",
"where",
"n",
"is",
"number",
"of",
"bits",
"of",
"this",
"mux",
"and",
"m",
"is",
"number",
"of",
"possible",
"inputs"
] | python | test |
python-openxml/python-docx | docx/oxml/shape.py | https://github.com/python-openxml/python-docx/blob/6756f6cd145511d3eb6d1d188beea391b1ddfd53/docx/oxml/shape.py#L61-L75 | def new(cls, cx, cy, shape_id, pic):
"""
Return a new ``<wp:inline>`` element populated with the values passed
as parameters.
"""
inline = parse_xml(cls._inline_xml())
inline.extent.cx = cx
inline.extent.cy = cy
inline.docPr.id = shape_id
inline.do... | [
"def",
"new",
"(",
"cls",
",",
"cx",
",",
"cy",
",",
"shape_id",
",",
"pic",
")",
":",
"inline",
"=",
"parse_xml",
"(",
"cls",
".",
"_inline_xml",
"(",
")",
")",
"inline",
".",
"extent",
".",
"cx",
"=",
"cx",
"inline",
".",
"extent",
".",
"cy",
... | Return a new ``<wp:inline>`` element populated with the values passed
as parameters. | [
"Return",
"a",
"new",
"<wp",
":",
"inline",
">",
"element",
"populated",
"with",
"the",
"values",
"passed",
"as",
"parameters",
"."
] | python | train |
pallets/werkzeug | examples/plnt/utils.py | https://github.com/pallets/werkzeug/blob/a220671d66755a94630a212378754bb432811158/examples/plnt/utils.py#L76-L80 | def render_template(template_name, **context):
"""Render a template into a response."""
tmpl = jinja_env.get_template(template_name)
context["url_for"] = url_for
return Response(tmpl.render(context), mimetype="text/html") | [
"def",
"render_template",
"(",
"template_name",
",",
"*",
"*",
"context",
")",
":",
"tmpl",
"=",
"jinja_env",
".",
"get_template",
"(",
"template_name",
")",
"context",
"[",
"\"url_for\"",
"]",
"=",
"url_for",
"return",
"Response",
"(",
"tmpl",
".",
"render"... | Render a template into a response. | [
"Render",
"a",
"template",
"into",
"a",
"response",
"."
] | python | train |
leancloud/python-sdk | leancloud/query.py | https://github.com/leancloud/python-sdk/blob/fea3240257ce65e6a32c7312a5cee1f94a51a587/leancloud/query.py#L424-L444 | def matched(self, key, regex, ignore_case=False, multi_line=False):
"""
增加查询条件，限制查询结果对象指定字段满足指定的正则表达式。
:param key: 查询条件字段名
:param regex: 查询正则表达式
:param ignore_case: 查询是否忽略大小写，默认不忽略
:param multi_line: 查询是否匹配多行，默认不匹配
:rtype: Query
"""
if not isinsta... | [
"def",
"matched",
"(",
"self",
",",
"key",
",",
"regex",
",",
"ignore_case",
"=",
"False",
",",
"multi_line",
"=",
"False",
")",
":",
"if",
"not",
"isinstance",
"(",
"regex",
",",
"six",
".",
"string_types",
")",
":",
"raise",
"TypeError",
"(",
"'match... | 增加查询条件，限制查询结果对象指定字段满足指定的正则表达式。
:param key: 查询条件字段名
:param regex: 查询正则表达式
:param ignore_case: 查询是否忽略大小写，默认不忽略
:param multi_line: 查询是否匹配多行，默认不匹配
:rtype: Query | [
"增加查询条件，限制查询结果对象指定字段满足指定的正则表达式。"
] | python | train |
secdev/scapy | scapy/contrib/pnio.py | https://github.com/secdev/scapy/blob/3ffe757c184017dd46464593a8f80f85abc1e79a/scapy/contrib/pnio.py#L74-L96 | def s2i_frameid(x):
""" Get pnio frame ID from a representation name
Performs a reverse look-up in PNIO_FRAME_IDS dictionary
:param x: a value of PNIO_FRAME_IDS dict
:returns: integer
"""
try:
return {
"RT_CLASS_3": 0x0100,
"RT_CLASS_1": 0x8000,
"RT_... | [
"def",
"s2i_frameid",
"(",
"x",
")",
":",
"try",
":",
"return",
"{",
"\"RT_CLASS_3\"",
":",
"0x0100",
",",
"\"RT_CLASS_1\"",
":",
"0x8000",
",",
"\"RT_CLASS_UDP\"",
":",
"0xC000",
",",
"\"FragmentationFrameID\"",
":",
"0xFF80",
",",
"}",
"[",
"x",
"]",
"ex... | Get pnio frame ID from a representation name
Performs a reverse look-up in PNIO_FRAME_IDS dictionary
:param x: a value of PNIO_FRAME_IDS dict
:returns: integer | [
"Get",
"pnio",
"frame",
"ID",
"from",
"a",
"representation",
"name"
] | python | train |
graphql-python/graphql-core-next | graphql/language/parser.py | https://github.com/graphql-python/graphql-core-next/blob/073dce3f002f897d40f9348ffd8f107815160540/graphql/language/parser.py#L161-L171 | def parse_definition(lexer: Lexer) -> DefinitionNode:
"""Definition: ExecutableDefinition or TypeSystemDefinition"""
if peek(lexer, TokenKind.NAME):
func = _parse_definition_functions.get(cast(str, lexer.token.value))
if func:
return func(lexer)
elif peek(lexer, TokenKind.BRACE_L... | [
"def",
"parse_definition",
"(",
"lexer",
":",
"Lexer",
")",
"->",
"DefinitionNode",
":",
"if",
"peek",
"(",
"lexer",
",",
"TokenKind",
".",
"NAME",
")",
":",
"func",
"=",
"_parse_definition_functions",
".",
"get",
"(",
"cast",
"(",
"str",
",",
"lexer",
"... | Definition: ExecutableDefinition or TypeSystemDefinition | [
"Definition",
":",
"ExecutableDefinition",
"or",
"TypeSystemDefinition"
] | python | train |
pandas-dev/pandas | pandas/plotting/_misc.py | https://github.com/pandas-dev/pandas/blob/9feb3ad92cc0397a04b665803a49299ee7aa1037/pandas/plotting/_misc.py#L566-L593 | def lag_plot(series, lag=1, ax=None, **kwds):
"""Lag plot for time series.
Parameters
----------
series : Time series
lag : lag of the scatter plot, default 1
ax : Matplotlib axis object, optional
kwds : Matplotlib scatter method keyword arguments, optional
Returns
-------
clas... | [
"def",
"lag_plot",
"(",
"series",
",",
"lag",
"=",
"1",
",",
"ax",
"=",
"None",
",",
"*",
"*",
"kwds",
")",
":",
"import",
"matplotlib",
".",
"pyplot",
"as",
"plt",
"# workaround because `c='b'` is hardcoded in matplotlibs scatter method",
"kwds",
".",
"setdefau... | Lag plot for time series.
Parameters
----------
series : Time series
lag : lag of the scatter plot, default 1
ax : Matplotlib axis object, optional
kwds : Matplotlib scatter method keyword arguments, optional
Returns
-------
class:`matplotlib.axis.Axes` | [
"Lag",
"plot",
"for",
"time",
"series",
"."
] | python | train |
openid/JWTConnect-Python-CryptoJWT | src/cryptojwt/jwx.py | https://github.com/openid/JWTConnect-Python-CryptoJWT/blob/8863cfbfe77ca885084870b234a66b55bd52930c/src/cryptojwt/jwx.py#L175-L228 | def pick_keys(self, keys, use="", alg=""):
"""
The assumption is that upper layer has made certain you only get
keys you can use.
:param alg: The crypto algorithm
:param use: What the key should be used for
:param keys: A list of JWK instances
:return: A list of ... | [
"def",
"pick_keys",
"(",
"self",
",",
"keys",
",",
"use",
"=",
"\"\"",
",",
"alg",
"=",
"\"\"",
")",
":",
"if",
"not",
"alg",
":",
"alg",
"=",
"self",
"[",
"\"alg\"",
"]",
"if",
"alg",
"==",
"\"none\"",
":",
"return",
"[",
"]",
"_k",
"=",
"self... | The assumption is that upper layer has made certain you only get
keys you can use.
:param alg: The crypto algorithm
:param use: What the key should be used for
:param keys: A list of JWK instances
:return: A list of JWK instances that fulfill the requirements | [
"The",
"assumption",
"is",
"that",
"upper",
"layer",
"has",
"made",
"certain",
"you",
"only",
"get",
"keys",
"you",
"can",
"use",
"."
] | python | train |
quiltdata/quilt | compiler/quilt/tools/build.py | https://github.com/quiltdata/quilt/blob/651853e7e89a8af86e0ff26167e752efa5878c12/compiler/quilt/tools/build.py#L599-L612 | def generate_build_file(startpath, outfilename=DEFAULT_BUILDFILE):
"""
Generate a build file (yaml) based on the contents of a
directory tree.
"""
buildfilepath = os.path.join(startpath, outfilename)
if os.path.exists(buildfilepath):
raise BuildException("Build file %s already exists." %... | [
"def",
"generate_build_file",
"(",
"startpath",
",",
"outfilename",
"=",
"DEFAULT_BUILDFILE",
")",
":",
"buildfilepath",
"=",
"os",
".",
"path",
".",
"join",
"(",
"startpath",
",",
"outfilename",
")",
"if",
"os",
".",
"path",
".",
"exists",
"(",
"buildfilepa... | Generate a build file (yaml) based on the contents of a
directory tree. | [
"Generate",
"a",
"build",
"file",
"(",
"yaml",
")",
"based",
"on",
"the",
"contents",
"of",
"a",
"directory",
"tree",
"."
] | python | train |
log2timeline/dfvfs | dfvfs/vfs/apfs_file_system.py | https://github.com/log2timeline/dfvfs/blob/2b3ccd115f9901d89f383397d4a1376a873c83c4/dfvfs/vfs/apfs_file_system.py#L180-L189 | def GetRootFileEntry(self):
"""Retrieves the root file entry.
Returns:
APFSFileEntry: file entry.
"""
path_spec = apfs_path_spec.APFSPathSpec(
location=self.LOCATION_ROOT, identifier=self.ROOT_DIRECTORY_IDENTIFIER,
parent=self._path_spec.parent)
return self.GetFileEntryByPathS... | [
"def",
"GetRootFileEntry",
"(",
"self",
")",
":",
"path_spec",
"=",
"apfs_path_spec",
".",
"APFSPathSpec",
"(",
"location",
"=",
"self",
".",
"LOCATION_ROOT",
",",
"identifier",
"=",
"self",
".",
"ROOT_DIRECTORY_IDENTIFIER",
",",
"parent",
"=",
"self",
".",
"_... | Retrieves the root file entry.
Returns:
APFSFileEntry: file entry. | [
"Retrieves",
"the",
"root",
"file",
"entry",
"."
] | python | train |
PmagPy/PmagPy | pmagpy/pmag.py | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/pmagpy/pmag.py#L5647-L5672 | def doseigs(s):
"""
convert s format for eigenvalues and eigenvectors
Parameters
__________
s=[x11,x22,x33,x12,x23,x13] : the six tensor elements
Return
__________
tau : [t1,t2,t3]
tau is an list of eigenvalues in decreasing order:
V : [[V1_dec,V1_inc],[V2_dec,V2... | [
"def",
"doseigs",
"(",
"s",
")",
":",
"#",
"A",
"=",
"s2a",
"(",
"s",
")",
"# convert s to a (see Tauxe 1998)",
"tau",
",",
"V",
"=",
"tauV",
"(",
"A",
")",
"# convert to eigenvalues (t), eigenvectors (V)",
"Vdirs",
"=",
"[",
"]",
"for",
"v",
"in",
"V",
... | convert s format for eigenvalues and eigenvectors
Parameters
__________
s=[x11,x22,x33,x12,x23,x13] : the six tensor elements
Return
__________
tau : [t1,t2,t3]
tau is an list of eigenvalues in decreasing order:
V : [[V1_dec,V1_inc],[V2_dec,V2_inc],[V3_dec,V3_inc]]
... | [
"convert",
"s",
"format",
"for",
"eigenvalues",
"and",
"eigenvectors"
] | python | train |
pybel/pybel-tools | src/pybel_tools/utils.py | https://github.com/pybel/pybel-tools/blob/3491adea0ac4ee60f57275ef72f9b73da6dbfe0c/src/pybel_tools/utils.py#L75-L83 | def tanimoto_set_similarity(x: Iterable[X], y: Iterable[X]) -> float:
"""Calculate the tanimoto set similarity."""
a, b = set(x), set(y)
union = a | b
if not union:
return 0.0
return len(a & b) / len(union) | [
"def",
"tanimoto_set_similarity",
"(",
"x",
":",
"Iterable",
"[",
"X",
"]",
",",
"y",
":",
"Iterable",
"[",
"X",
"]",
")",
"->",
"float",
":",
"a",
",",
"b",
"=",
"set",
"(",
"x",
")",
",",
"set",
"(",
"y",
")",
"union",
"=",
"a",
"|",
"b",
... | Calculate the tanimoto set similarity. | [
"Calculate",
"the",
"tanimoto",
"set",
"similarity",
"."
] | python | valid |
sepandhaghighi/pycm | pycm/pycm_overall_func.py | https://github.com/sepandhaghighi/pycm/blob/cb03258afd6a821d10acba73c965aaac174bedcd/pycm/pycm_overall_func.py#L327-L349 | def cross_entropy_calc(TOP, P, POP):
"""
Calculate cross entropy.
:param TOP: test outcome positive
:type TOP : dict
:param P: condition positive
:type P : dict
:param POP: population
:type POP : dict
:return: cross entropy as float
"""
try:
result = 0
for i ... | [
"def",
"cross_entropy_calc",
"(",
"TOP",
",",
"P",
",",
"POP",
")",
":",
"try",
":",
"result",
"=",
"0",
"for",
"i",
"in",
"TOP",
".",
"keys",
"(",
")",
":",
"reference_likelihood",
"=",
"P",
"[",
"i",
"]",
"/",
"POP",
"[",
"i",
"]",
"response_li... | Calculate cross entropy.
:param TOP: test outcome positive
:type TOP : dict
:param P: condition positive
:type P : dict
:param POP: population
:type POP : dict
:return: cross entropy as float | [
"Calculate",
"cross",
"entropy",
"."
] | python | train |
Nic30/hwt | hwt/simulator/hdlSimulator.py | https://github.com/Nic30/hwt/blob/8cbb399e326da3b22c233b98188a9d08dec057e6/hwt/simulator/hdlSimulator.py#L434-L443 | def read(self, sig) -> Value:
"""
Read value from signal or interface
"""
try:
v = sig._val
except AttributeError:
v = sig._sigInside._val
return v.clone() | [
"def",
"read",
"(",
"self",
",",
"sig",
")",
"->",
"Value",
":",
"try",
":",
"v",
"=",
"sig",
".",
"_val",
"except",
"AttributeError",
":",
"v",
"=",
"sig",
".",
"_sigInside",
".",
"_val",
"return",
"v",
".",
"clone",
"(",
")"
] | Read value from signal or interface | [
"Read",
"value",
"from",
"signal",
"or",
"interface"
] | python | test |
cloud-custodian/cloud-custodian | tools/c7n_azure/c7n_azure/tags.py | https://github.com/cloud-custodian/cloud-custodian/blob/52ef732eb3d7bc939d1579faf519314814695c08/tools/c7n_azure/c7n_azure/tags.py#L99-L108 | def get_tag_value(resource, tag, utf_8=False):
"""Get the resource's tag value."""
tags = {k.lower(): v for k, v in resource.get('tags', {}).items()}
value = tags.get(tag, False)
if value is not False:
if utf_8:
value = value.encode('utf8').decode('u... | [
"def",
"get_tag_value",
"(",
"resource",
",",
"tag",
",",
"utf_8",
"=",
"False",
")",
":",
"tags",
"=",
"{",
"k",
".",
"lower",
"(",
")",
":",
"v",
"for",
"k",
",",
"v",
"in",
"resource",
".",
"get",
"(",
"'tags'",
",",
"{",
"}",
")",
".",
"i... | Get the resource's tag value. | [
"Get",
"the",
"resource",
"s",
"tag",
"value",
"."
] | python | train |
Kortemme-Lab/klab | klab/benchmarking/analysis/ssm.py | https://github.com/Kortemme-Lab/klab/blob/6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b/klab/benchmarking/analysis/ssm.py#L482-L500 | def get_std_xy_dataset_statistics(x_values, y_values, expect_negative_correlation = False, STDev_cutoff = 1.0):
'''Calls parse_csv and returns the analysis in a format similar to get_xy_dataset_statistics in klab.stats.misc.'''
assert(len(x_values) == len(y_values))
csv_lines = ['ID,X,Y'] + [','.join(map(st... | [
"def",
"get_std_xy_dataset_statistics",
"(",
"x_values",
",",
"y_values",
",",
"expect_negative_correlation",
"=",
"False",
",",
"STDev_cutoff",
"=",
"1.0",
")",
":",
"assert",
"(",
"len",
"(",
"x_values",
")",
"==",
"len",
"(",
"y_values",
")",
")",
"csv_line... | Calls parse_csv and returns the analysis in a format similar to get_xy_dataset_statistics in klab.stats.misc. | [
"Calls",
"parse_csv",
"and",
"returns",
"the",
"analysis",
"in",
"a",
"format",
"similar",
"to",
"get_xy_dataset_statistics",
"in",
"klab",
".",
"stats",
".",
"misc",
"."
] | python | train |
materialsproject/pymatgen | pymatgen/alchemy/transmuters.py | https://github.com/materialsproject/pymatgen/blob/4ca558cf72f8d5f8a1f21dfdfc0181a971c186da/pymatgen/alchemy/transmuters.py#L206-L222 | def append_transformed_structures(self, tstructs_or_transmuter):
"""
Method is overloaded to accept either a list of transformed structures
or transmuter, it which case it appends the second transmuter"s
structures.
Args:
tstructs_or_transmuter: A list of transformed... | [
"def",
"append_transformed_structures",
"(",
"self",
",",
"tstructs_or_transmuter",
")",
":",
"if",
"isinstance",
"(",
"tstructs_or_transmuter",
",",
"self",
".",
"__class__",
")",
":",
"self",
".",
"transformed_structures",
".",
"extend",
"(",
"tstructs_or_transmuter... | Method is overloaded to accept either a list of transformed structures
or transmuter, it which case it appends the second transmuter"s
structures.
Args:
tstructs_or_transmuter: A list of transformed structures or a
transmuter. | [
"Method",
"is",
"overloaded",
"to",
"accept",
"either",
"a",
"list",
"of",
"transformed",
"structures",
"or",
"transmuter",
"it",
"which",
"case",
"it",
"appends",
"the",
"second",
"transmuter",
"s",
"structures",
"."
] | python | train |
kubernetes-client/python | kubernetes/client/apis/certificates_v1beta1_api.py | https://github.com/kubernetes-client/python/blob/5e512ff564c244c50cab780d821542ed56aa965a/kubernetes/client/apis/certificates_v1beta1_api.py#L942-L962 | def read_certificate_signing_request_status(self, name, **kwargs):
"""
read status of the specified CertificateSigningRequest
This method makes a synchronous HTTP request by default. To make an
asynchronous HTTP request, please pass async_req=True
>>> thread = api.read_certificat... | [
"def",
"read_certificate_signing_request_status",
"(",
"self",
",",
"name",
",",
"*",
"*",
"kwargs",
")",
":",
"kwargs",
"[",
"'_return_http_data_only'",
"]",
"=",
"True",
"if",
"kwargs",
".",
"get",
"(",
"'async_req'",
")",
":",
"return",
"self",
".",
"read... | read status of the specified CertificateSigningRequest
This method makes a synchronous HTTP request by default. To make an
asynchronous HTTP request, please pass async_req=True
>>> thread = api.read_certificate_signing_request_status(name, async_req=True)
>>> result = thread.get()
... | [
"read",
"status",
"of",
"the",
"specified",
"CertificateSigningRequest",
"This",
"method",
"makes",
"a",
"synchronous",
"HTTP",
"request",
"by",
"default",
".",
"To",
"make",
"an",
"asynchronous",
"HTTP",
"request",
"please",
"pass",
"async_req",
"=",
"True",
">... | python | train |
pyvisa/pyvisa | pyvisa/thirdparty/prettytable.py | https://github.com/pyvisa/pyvisa/blob/b8b2d4371e1f00782856aa9176ff1ced6bcb3798/pyvisa/thirdparty/prettytable.py#L1430-L1438 | def from_html(html_code, **kwargs):
"""
Generates a list of PrettyTables from a string of HTML code. Each <table> in
the HTML becomes one PrettyTable object.
"""
parser = TableHandler(**kwargs)
parser.feed(html_code)
return parser.tables | [
"def",
"from_html",
"(",
"html_code",
",",
"*",
"*",
"kwargs",
")",
":",
"parser",
"=",
"TableHandler",
"(",
"*",
"*",
"kwargs",
")",
"parser",
".",
"feed",
"(",
"html_code",
")",
"return",
"parser",
".",
"tables"
] | Generates a list of PrettyTables from a string of HTML code. Each <table> in
the HTML becomes one PrettyTable object. | [
"Generates",
"a",
"list",
"of",
"PrettyTables",
"from",
"a",
"string",
"of",
"HTML",
"code",
".",
"Each",
"<table",
">",
"in",
"the",
"HTML",
"becomes",
"one",
"PrettyTable",
"object",
"."
] | python | train |
textX/textX | textx/scoping/__init__.py | https://github.com/textX/textX/blob/5796ac38116ad86584392dbecdbf923ede746361/textx/scoping/__init__.py#L255-L270 | def pre_ref_resolution_callback(self, other_model):
"""
(internal: used to store a model after parsing into the repository)
Args:
other_model: the parsed model
Returns:
nothing
"""
# print("PRE-CALLBACK{}".format(filename))
filename = oth... | [
"def",
"pre_ref_resolution_callback",
"(",
"self",
",",
"other_model",
")",
":",
"# print(\"PRE-CALLBACK{}\".format(filename))",
"filename",
"=",
"other_model",
".",
"_tx_filename",
"assert",
"(",
"filename",
")",
"other_model",
".",
"_tx_model_repository",
"=",
"GlobalMo... | (internal: used to store a model after parsing into the repository)
Args:
other_model: the parsed model
Returns:
nothing | [
"(",
"internal",
":",
"used",
"to",
"store",
"a",
"model",
"after",
"parsing",
"into",
"the",
"repository",
")"
] | python | train |
jobovy/galpy | galpy/potential/FerrersPotential.py | https://github.com/jobovy/galpy/blob/9c5b9fe65d58835624dffe432be282060918ee08/galpy/potential/FerrersPotential.py#L170-L187 | def _zforce(self,R,z,phi=0.,t=0.):
"""
NAME:
_zforce
PURPOSE:
evaluate the vertical force for this potential
INPUT:
R - Galactocentric cylindrical radius
z - vertical height
phi - azimuth
t - time
OUTPUT:
... | [
"def",
"_zforce",
"(",
"self",
",",
"R",
",",
"z",
",",
"phi",
"=",
"0.",
",",
"t",
"=",
"0.",
")",
":",
"if",
"not",
"self",
".",
"isNonAxi",
":",
"phi",
"=",
"0.",
"self",
".",
"_compute_xyzforces",
"(",
"R",
",",
"z",
",",
"phi",
",",
"t",... | NAME:
_zforce
PURPOSE:
evaluate the vertical force for this potential
INPUT:
R - Galactocentric cylindrical radius
z - vertical height
phi - azimuth
t - time
OUTPUT:
the vertical force | [
"NAME",
":",
"_zforce",
"PURPOSE",
":",
"evaluate",
"the",
"vertical",
"force",
"for",
"this",
"potential",
"INPUT",
":",
"R",
"-",
"Galactocentric",
"cylindrical",
"radius",
"z",
"-",
"vertical",
"height",
"phi",
"-",
"azimuth",
"t",
"-",
"time",
"OUTPUT",
... | python | train |
coleifer/django-relationships | relationships/models.py | https://github.com/coleifer/django-relationships/blob/f15d0a186d9cc5cc2ca3fb2b6ec4b498df951805/relationships/models.py#L112-L130 | def remove(self, user, status=None, symmetrical=False):
"""
Remove a relationship from one user to another, with the same caveats
and behavior as adding a relationship.
"""
if not status:
status = RelationshipStatus.objects.following()
res = Relationship.obje... | [
"def",
"remove",
"(",
"self",
",",
"user",
",",
"status",
"=",
"None",
",",
"symmetrical",
"=",
"False",
")",
":",
"if",
"not",
"status",
":",
"status",
"=",
"RelationshipStatus",
".",
"objects",
".",
"following",
"(",
")",
"res",
"=",
"Relationship",
... | Remove a relationship from one user to another, with the same caveats
and behavior as adding a relationship. | [
"Remove",
"a",
"relationship",
"from",
"one",
"user",
"to",
"another",
"with",
"the",
"same",
"caveats",
"and",
"behavior",
"as",
"adding",
"a",
"relationship",
"."
] | python | train |
rochacbruno/flasgger | examples/custom_validation_function.py | https://github.com/rochacbruno/flasgger/blob/fef154f61d7afca548067be0c758c3dd71cc4c97/examples/custom_validation_function.py#L17-L24 | def drop_id_validate(data, schema):
"""
Custom validation function which drops parameter '_id' if present
in data
"""
jsonschema.validate(data, schema)
if data.get('_id') is not None:
del data['_id'] | [
"def",
"drop_id_validate",
"(",
"data",
",",
"schema",
")",
":",
"jsonschema",
".",
"validate",
"(",
"data",
",",
"schema",
")",
"if",
"data",
".",
"get",
"(",
"'_id'",
")",
"is",
"not",
"None",
":",
"del",
"data",
"[",
"'_id'",
"]"
] | Custom validation function which drops parameter '_id' if present
in data | [
"Custom",
"validation",
"function",
"which",
"drops",
"parameter",
"_id",
"if",
"present",
"in",
"data"
] | python | train |
manrajgrover/halo | halo/_utils.py | https://github.com/manrajgrover/halo/blob/0ac5149dea965b27b09f0776df9095ebf013fb4d/halo/_utils.py#L80-L96 | def is_text_type(text):
"""Check if given parameter is a string or not
Parameters
----------
text : *
Parameter to be checked for text type
Returns
-------
bool
Whether parameter is a string or not
"""
if isinstance(text, six.text_type) or isinstance(text, six.strin... | [
"def",
"is_text_type",
"(",
"text",
")",
":",
"if",
"isinstance",
"(",
"text",
",",
"six",
".",
"text_type",
")",
"or",
"isinstance",
"(",
"text",
",",
"six",
".",
"string_types",
")",
":",
"return",
"True",
"return",
"False"
] | Check if given parameter is a string or not
Parameters
----------
text : *
Parameter to be checked for text type
Returns
-------
bool
Whether parameter is a string or not | [
"Check",
"if",
"given",
"parameter",
"is",
"a",
"string",
"or",
"not"
] | python | train |
nfcpy/nfcpy | src/nfc/tag/tt2.py | https://github.com/nfcpy/nfcpy/blob/6649146d1afdd5e82b2b6b1ea00aa58d50785117/src/nfc/tag/tt2.py#L496-L520 | def write(self, page, data):
"""Send a WRITE command to store data on the tag.
The *page* argument specifies the offset in multiples of 4
bytes. The *data* argument must be a string or bytearray of
length 4.
Command execution errors raise :exc:`Type2TagCommandError`.
"... | [
"def",
"write",
"(",
"self",
",",
"page",
",",
"data",
")",
":",
"if",
"len",
"(",
"data",
")",
"!=",
"4",
":",
"raise",
"ValueError",
"(",
"\"data must be a four byte string or array\"",
")",
"log",
".",
"debug",
"(",
"\"write {0} to page {1}\"",
".",
"form... | Send a WRITE command to store data on the tag.
The *page* argument specifies the offset in multiples of 4
bytes. The *data* argument must be a string or bytearray of
length 4.
Command execution errors raise :exc:`Type2TagCommandError`. | [
"Send",
"a",
"WRITE",
"command",
"to",
"store",
"data",
"on",
"the",
"tag",
"."
] | python | train |
aliyun/aliyun-log-python-sdk | aliyun/log/pluralize.py | https://github.com/aliyun/aliyun-log-python-sdk/blob/ac383db0a16abf1e5ef7df36074374184b43516e/aliyun/log/pluralize.py#L37-L94 | def pluralize(singular):
"""Return plural form of given lowercase singular word (English only). Based on
ActiveState recipe http://code.activestate.com/recipes/413172/
>>> pluralize('')
''
>>> pluralize('goose')
'geese'
>>> pluralize('dolly')
'dollies'
>>> pluralize('genius')
'g... | [
"def",
"pluralize",
"(",
"singular",
")",
":",
"if",
"not",
"singular",
":",
"return",
"''",
"plural",
"=",
"ABERRANT_PLURAL_MAP",
".",
"get",
"(",
"singular",
")",
"if",
"plural",
":",
"return",
"plural",
"root",
"=",
"singular",
"try",
":",
"if",
"sing... | Return plural form of given lowercase singular word (English only). Based on
ActiveState recipe http://code.activestate.com/recipes/413172/
>>> pluralize('')
''
>>> pluralize('goose')
'geese'
>>> pluralize('dolly')
'dollies'
>>> pluralize('genius')
'genii'
>>> pluralize('jones')... | [
"Return",
"plural",
"form",
"of",
"given",
"lowercase",
"singular",
"word",
"(",
"English",
"only",
")",
".",
"Based",
"on",
"ActiveState",
"recipe",
"http",
":",
"//",
"code",
".",
"activestate",
".",
"com",
"/",
"recipes",
"/",
"413172",
"/"
] | python | train |
vtraag/leidenalg | setup.py | https://github.com/vtraag/leidenalg/blob/a9e15116973a81048edf02ef7cf800d54debe1cc/setup.py#L408-L415 | def configure(self, ext):
"""Configures the given Extension object using this build configuration."""
ext.include_dirs += self.include_dirs
ext.library_dirs += self.library_dirs
ext.libraries += self.libraries
ext.extra_compile_args += self.extra_compile_args
ext.extra_li... | [
"def",
"configure",
"(",
"self",
",",
"ext",
")",
":",
"ext",
".",
"include_dirs",
"+=",
"self",
".",
"include_dirs",
"ext",
".",
"library_dirs",
"+=",
"self",
".",
"library_dirs",
"ext",
".",
"libraries",
"+=",
"self",
".",
"libraries",
"ext",
".",
"ext... | Configures the given Extension object using this build configuration. | [
"Configures",
"the",
"given",
"Extension",
"object",
"using",
"this",
"build",
"configuration",
"."
] | python | train |
googleapis/google-cloud-python | datastore/google/cloud/datastore/transaction.py | https://github.com/googleapis/google-cloud-python/blob/85e80125a59cb10f8cb105f25ecc099e4b940b50/datastore/google/cloud/datastore/transaction.py#L196-L212 | def begin(self):
"""Begins a transaction.
This method is called automatically when entering a with
statement, however it can be called explicitly if you don't want
to use a context manager.
:raises: :class:`~exceptions.ValueError` if the transaction has
already... | [
"def",
"begin",
"(",
"self",
")",
":",
"super",
"(",
"Transaction",
",",
"self",
")",
".",
"begin",
"(",
")",
"try",
":",
"response_pb",
"=",
"self",
".",
"_client",
".",
"_datastore_api",
".",
"begin_transaction",
"(",
"self",
".",
"project",
")",
"se... | Begins a transaction.
This method is called automatically when entering a with
statement, however it can be called explicitly if you don't want
to use a context manager.
:raises: :class:`~exceptions.ValueError` if the transaction has
already begun. | [
"Begins",
"a",
"transaction",
"."
] | python | train |
AWegnerGitHub/smokeapi | smokeapi/smokeapi.py | https://github.com/AWegnerGitHub/smokeapi/blob/0ba786712e1f7377e5a83539a9ba8d5b3461b9c9/smokeapi/smokeapi.py#L186-L255 | def send_data(self, endpoint=None, **kwargs):
"""Sends data to the API.
This call is similar to ``fetch``, but **sends** data to the API instead
of retrieving it.
Returned data will appear in the ``items`` key of the resulting
dictionary.
Sending data **requires** tha... | [
"def",
"send_data",
"(",
"self",
",",
"endpoint",
"=",
"None",
",",
"*",
"*",
"kwargs",
")",
":",
"if",
"not",
"endpoint",
":",
"raise",
"ValueError",
"(",
"'No end point provided.'",
")",
"if",
"not",
"self",
".",
"token",
":",
"raise",
"ValueError",
"(... | Sends data to the API.
This call is similar to ``fetch``, but **sends** data to the API instead
of retrieving it.
Returned data will appear in the ``items`` key of the resulting
dictionary.
Sending data **requires** that the ``token`` is set.
:param endpoint: (string)... | [
"Sends",
"data",
"to",
"the",
"API",
"."
] | python | train |
coinkite/connectrum | connectrum/svr_info.py | https://github.com/coinkite/connectrum/blob/99948f92cc5c3ecb1a8a70146294014e608e50fc/connectrum/svr_info.py#L203-L211 | def add_single(self, hostname, ports, nickname=None, **kws):
'''
Explicitly add a single entry.
Hostname is a FQDN and ports is either a single int (assumed to be TCP port)
or Electrum protocol/port number specification with spaces in between.
'''
nickname = n... | [
"def",
"add_single",
"(",
"self",
",",
"hostname",
",",
"ports",
",",
"nickname",
"=",
"None",
",",
"*",
"*",
"kws",
")",
":",
"nickname",
"=",
"nickname",
"or",
"hostname",
"self",
"[",
"hostname",
".",
"lower",
"(",
")",
"]",
"=",
"ServerInfo",
"("... | Explicitly add a single entry.
Hostname is a FQDN and ports is either a single int (assumed to be TCP port)
or Electrum protocol/port number specification with spaces in between. | [
"Explicitly",
"add",
"a",
"single",
"entry",
".",
"Hostname",
"is",
"a",
"FQDN",
"and",
"ports",
"is",
"either",
"a",
"single",
"int",
"(",
"assumed",
"to",
"be",
"TCP",
"port",
")",
"or",
"Electrum",
"protocol",
"/",
"port",
"number",
"specification",
"... | python | train |
ph4r05/monero-serialize | monero_serialize/core/message_types.py | https://github.com/ph4r05/monero-serialize/blob/cebb3ba2aaf2e9211b1dcc6db2bab02946d06e42/monero_serialize/core/message_types.py#L153-L164 | def container_elem_type(container_type, params):
"""
Returns container element type
:param container_type:
:param params:
:return:
"""
elem_type = params[0] if params else None
if elem_type is None:
elem_type = container_type.ELEM_TYPE
return elem_type | [
"def",
"container_elem_type",
"(",
"container_type",
",",
"params",
")",
":",
"elem_type",
"=",
"params",
"[",
"0",
"]",
"if",
"params",
"else",
"None",
"if",
"elem_type",
"is",
"None",
":",
"elem_type",
"=",
"container_type",
".",
"ELEM_TYPE",
"return",
"el... | Returns container element type
:param container_type:
:param params:
:return: | [
"Returns",
"container",
"element",
"type"
] | python | train |
pantsbuild/pants | pants-plugins/src/python/internal_backend/utilities/register.py | https://github.com/pantsbuild/pants/blob/b72e650da0df685824ffdcc71988b8c282d0962d/pants-plugins/src/python/internal_backend/utilities/register.py#L122-L134 | def notes_for_version(self, version):
"""Given the parsed Version of pants, return its release notes.
TODO: This method should parse out the specific version from the resulting file:
see https://github.com/pantsbuild/pants/issues/1708
"""
branch_name = self._branch_name(version)
branch_notes_... | [
"def",
"notes_for_version",
"(",
"self",
",",
"version",
")",
":",
"branch_name",
"=",
"self",
".",
"_branch_name",
"(",
"version",
")",
"branch_notes_file",
"=",
"self",
".",
"_branch_notes",
".",
"get",
"(",
"branch_name",
",",
"None",
")",
"if",
"branch_n... | Given the parsed Version of pants, return its release notes.
TODO: This method should parse out the specific version from the resulting file:
see https://github.com/pantsbuild/pants/issues/1708 | [
"Given",
"the",
"parsed",
"Version",
"of",
"pants",
"return",
"its",
"release",
"notes",
"."
] | python | train |
tensorflow/probability | tensorflow_probability/python/vi/csiszar_divergence.py | https://github.com/tensorflow/probability/blob/e87fe34111d68c35db0f9eeb4935f1ece9e1a8f5/tensorflow_probability/python/vi/csiszar_divergence.py#L712-L780 | def symmetrized_csiszar_function(logu, csiszar_function, name=None):
"""Symmetrizes a Csiszar-function in log-space.
A Csiszar-function is a member of,
```none
F = { f:R_+ to R : f convex }.
```
The symmetrized Csiszar-function is defined as:
```none
f_g(u) = 0.5 g(u) + 0.5 u g (1 / u)
```
wher... | [
"def",
"symmetrized_csiszar_function",
"(",
"logu",
",",
"csiszar_function",
",",
"name",
"=",
"None",
")",
":",
"with",
"tf",
".",
"compat",
".",
"v1",
".",
"name_scope",
"(",
"name",
",",
"\"symmetrized_csiszar_function\"",
",",
"[",
"logu",
"]",
")",
":",... | Symmetrizes a Csiszar-function in log-space.
A Csiszar-function is a member of,
```none
F = { f:R_+ to R : f convex }.
```
The symmetrized Csiszar-function is defined as:
```none
f_g(u) = 0.5 g(u) + 0.5 u g (1 / u)
```
where `g` is some other Csiszar-function.
We say the function is "symmetriz... | [
"Symmetrizes",
"a",
"Csiszar",
"-",
"function",
"in",
"log",
"-",
"space",
"."
] | python | test |
blockstack/blockstack-core | blockstack/blockstackd.py | https://github.com/blockstack/blockstack-core/blob/1dcfdd39b152d29ce13e736a6a1a0981401a0505/blockstack/blockstackd.py#L1188-L1204 | def rpc_get_names_owned_by_address(self, address, **con_info):
"""
Get the list of names owned by an address.
Return {'status': True, 'names': ...} on success
Return {'error': ...} on error
"""
if not check_address(address):
return {'error': 'Invalid address',... | [
"def",
"rpc_get_names_owned_by_address",
"(",
"self",
",",
"address",
",",
"*",
"*",
"con_info",
")",
":",
"if",
"not",
"check_address",
"(",
"address",
")",
":",
"return",
"{",
"'error'",
":",
"'Invalid address'",
",",
"'http_status'",
":",
"400",
"}",
"db"... | Get the list of names owned by an address.
Return {'status': True, 'names': ...} on success
Return {'error': ...} on error | [
"Get",
"the",
"list",
"of",
"names",
"owned",
"by",
"an",
"address",
".",
"Return",
"{",
"status",
":",
"True",
"names",
":",
"...",
"}",
"on",
"success",
"Return",
"{",
"error",
":",
"...",
"}",
"on",
"error"
] | python | train |
tensorpack/tensorpack | examples/GAN/GAN.py | https://github.com/tensorpack/tensorpack/blob/d7a13cb74c9066bc791d7aafc3b744b60ee79a9f/examples/GAN/GAN.py#L27-L62 | def build_losses(self, logits_real, logits_fake):
"""
Build standard GAN loss and set `self.g_loss` and `self.d_loss`.
D and G play two-player minimax game with value function V(G,D)
min_G max _D V(D, G) = IE_{x ~ p_data} [log D(x)] + IE_{z ~ p_fake} [log (1 - D(G(z)))]
Args... | [
"def",
"build_losses",
"(",
"self",
",",
"logits_real",
",",
"logits_fake",
")",
":",
"with",
"tf",
".",
"name_scope",
"(",
"\"GAN_loss\"",
")",
":",
"score_real",
"=",
"tf",
".",
"sigmoid",
"(",
"logits_real",
")",
"score_fake",
"=",
"tf",
".",
"sigmoid",... | Build standard GAN loss and set `self.g_loss` and `self.d_loss`.
D and G play two-player minimax game with value function V(G,D)
min_G max _D V(D, G) = IE_{x ~ p_data} [log D(x)] + IE_{z ~ p_fake} [log (1 - D(G(z)))]
Args:
logits_real (tf.Tensor): discrim logits from real sample... | [
"Build",
"standard",
"GAN",
"loss",
"and",
"set",
"self",
".",
"g_loss",
"and",
"self",
".",
"d_loss",
"."
] | python | train |
omtinez/pddb | pddb/pddb.py | https://github.com/omtinez/pddb/blob/a24cee0702c8286c5c466c51ca65cf8dbc2c183c/pddb/pddb.py#L160-L253 | def load(self, table_names=None, table_schemas=None, table_rowgens=None):
'''
Initiates the tables, schemas and record generators for this database.
Parameters
----------
table_names : list of str, str or None
List of tables to load into this database. If `auto_load`... | [
"def",
"load",
"(",
"self",
",",
"table_names",
"=",
"None",
",",
"table_schemas",
"=",
"None",
",",
"table_rowgens",
"=",
"None",
")",
":",
"# Check for table schemas",
"if",
"table_schemas",
"is",
"not",
"None",
":",
"table_schemas",
"=",
"self",
".",
"_ch... | Initiates the tables, schemas and record generators for this database.
Parameters
----------
table_names : list of str, str or None
List of tables to load into this database. If `auto_load` is true, inserting a record
into a new table not provided here will automatically... | [
"Initiates",
"the",
"tables",
"schemas",
"and",
"record",
"generators",
"for",
"this",
"database",
"."
] | python | train |
ccubed/PyMoe | Pymoe/Bakatsuki/__init__.py | https://github.com/ccubed/PyMoe/blob/5b2a2591bb113bd80d838e65aaa06f3a97ff3670/Pymoe/Bakatsuki/__init__.py#L26-L55 | def active(self):
"""
Get a list of active projects.
:return list: A list of tuples containing a title and pageid in that order.
"""
projects = []
r = requests.get(self.api,
params={'action': 'query', 'list': 'categorymembers', 'cmpageid': self.a... | [
"def",
"active",
"(",
"self",
")",
":",
"projects",
"=",
"[",
"]",
"r",
"=",
"requests",
".",
"get",
"(",
"self",
".",
"api",
",",
"params",
"=",
"{",
"'action'",
":",
"'query'",
",",
"'list'",
":",
"'categorymembers'",
",",
"'cmpageid'",
":",
"self"... | Get a list of active projects.
:return list: A list of tuples containing a title and pageid in that order. | [
"Get",
"a",
"list",
"of",
"active",
"projects",
"."
] | python | train |
lmjohns3/downhill | downhill/base.py | https://github.com/lmjohns3/downhill/blob/42111ab03b5e6fa47b7bf7c7cb5caa402f10ce6d/downhill/base.py#L261-L279 | def _log(self, monitors, iteration, label='', suffix=''):
'''Log the state of the optimizer on the console.
Parameters
----------
monitors : OrderedDict
A dictionary of monitor names mapped to values. These names and
values are what is being logged.
itera... | [
"def",
"_log",
"(",
"self",
",",
"monitors",
",",
"iteration",
",",
"label",
"=",
"''",
",",
"suffix",
"=",
"''",
")",
":",
"label",
"=",
"label",
"or",
"self",
".",
"__class__",
".",
"__name__",
"fields",
"=",
"(",
"(",
"'{}={:.6f}'",
")",
".",
"f... | Log the state of the optimizer on the console.
Parameters
----------
monitors : OrderedDict
A dictionary of monitor names mapped to values. These names and
values are what is being logged.
iteration : int
Optimization iteration that we are logging.
... | [
"Log",
"the",
"state",
"of",
"the",
"optimizer",
"on",
"the",
"console",
"."
] | python | train |
materialsproject/pymatgen | pymatgen/io/babel.py | https://github.com/materialsproject/pymatgen/blob/4ca558cf72f8d5f8a1f21dfdfc0181a971c186da/pymatgen/io/babel.py#L201-L221 | def gen3d_conformer(self):
"""
A combined method to first generate 3D structures from 0D or 2D
structures and then find the minimum energy conformer:
1. Use OBBuilder to create a 3D structure using rules and ring templates
2. Do 250 steps of a steepest descent geometry optimizati... | [
"def",
"gen3d_conformer",
"(",
"self",
")",
":",
"gen3d",
"=",
"ob",
".",
"OBOp",
".",
"FindType",
"(",
"\"Gen3D\"",
")",
"gen3d",
".",
"Do",
"(",
"self",
".",
"_obmol",
")"
] | A combined method to first generate 3D structures from 0D or 2D
structures and then find the minimum energy conformer:
1. Use OBBuilder to create a 3D structure using rules and ring templates
2. Do 250 steps of a steepest descent geometry optimization with the
MMFF94 forcefield
... | [
"A",
"combined",
"method",
"to",
"first",
"generate",
"3D",
"structures",
"from",
"0D",
"or",
"2D",
"structures",
"and",
"then",
"find",
"the",
"minimum",
"energy",
"conformer",
":",
"1",
".",
"Use",
"OBBuilder",
"to",
"create",
"a",
"3D",
"structure",
"us... | python | train |
fitnr/convertdate | convertdate/gregorian.py | https://github.com/fitnr/convertdate/blob/e920f168a87f99183b0aa7290d6c3af222582d43/convertdate/gregorian.py#L43-L58 | def to_jd2(year, month, day):
'''Gregorian to Julian Day Count for years between 1801-2099'''
# http://quasar.as.utexas.edu/BillInfo/JulianDatesG.html
legal_date(year, month, day)
if month <= 2:
year = year - 1
month = month + 12
a = floor(year / 100)
b = floor(a / 4)
c = ... | [
"def",
"to_jd2",
"(",
"year",
",",
"month",
",",
"day",
")",
":",
"# http://quasar.as.utexas.edu/BillInfo/JulianDatesG.html",
"legal_date",
"(",
"year",
",",
"month",
",",
"day",
")",
"if",
"month",
"<=",
"2",
":",
"year",
"=",
"year",
"-",
"1",
"month",
"... | Gregorian to Julian Day Count for years between 1801-2099 | [
"Gregorian",
"to",
"Julian",
"Day",
"Count",
"for",
"years",
"between",
"1801",
"-",
"2099"
] | python | train |
ColtonProvias/sqlalchemy-jsonapi | sqlalchemy_jsonapi/serializer.py | https://github.com/ColtonProvias/sqlalchemy-jsonapi/blob/40f8b5970d44935b27091c2bf3224482d23311bb/sqlalchemy_jsonapi/serializer.py#L692-L713 | def get_resource(self, session, query, api_type, obj_id):
"""
Fetch a resource.
:param session: SQLAlchemy session
:param query: Dict of query args
:param api_type: Type of the resource
:param obj_id: ID of the resource
"""
resource = self._fetch_resource... | [
"def",
"get_resource",
"(",
"self",
",",
"session",
",",
"query",
",",
"api_type",
",",
"obj_id",
")",
":",
"resource",
"=",
"self",
".",
"_fetch_resource",
"(",
"session",
",",
"api_type",
",",
"obj_id",
",",
"Permissions",
".",
"VIEW",
")",
"include",
... | Fetch a resource.
:param session: SQLAlchemy session
:param query: Dict of query args
:param api_type: Type of the resource
:param obj_id: ID of the resource | [
"Fetch",
"a",
"resource",
"."
] | python | train |
edx/edx-submissions | submissions/api.py | https://github.com/edx/edx-submissions/blob/8d531ca25f7c2886dfcb1bb8febe0910e1433ca2/submissions/api.py#L307-L357 | def get_submission_and_student(uuid, read_replica=False):
"""
Retrieve a submission by its unique identifier, including the associated student item.
Args:
uuid (str): the unique identifier of the submission.
Kwargs:
read_replica (bool): If true, attempt to use the read replica database... | [
"def",
"get_submission_and_student",
"(",
"uuid",
",",
"read_replica",
"=",
"False",
")",
":",
"# This may raise API exceptions",
"submission",
"=",
"get_submission",
"(",
"uuid",
",",
"read_replica",
"=",
"read_replica",
")",
"# Retrieve the student item from the cache",
... | Retrieve a submission by its unique identifier, including the associated student item.
Args:
uuid (str): the unique identifier of the submission.
Kwargs:
read_replica (bool): If true, attempt to use the read replica database.
If no read replica is available, use the default databas... | [
"Retrieve",
"a",
"submission",
"by",
"its",
"unique",
"identifier",
"including",
"the",
"associated",
"student",
"item",
"."
] | python | train |
OpenTreeOfLife/peyotl | peyotl/phylo/compat.py | https://github.com/OpenTreeOfLife/peyotl/blob/5e4e52a0fdbd17f490aa644ad79fda6ea2eda7c0/peyotl/phylo/compat.py#L31-L38 | def sets_are_rooted_compat(one_set, other):
"""treats the 2 sets are sets of taxon IDs on the same (unstated)
universe of taxon ids.
Returns True clades implied by each are compatible and False otherwise
"""
if one_set.issubset(other) or other.issubset(one_set):
return True
return not in... | [
"def",
"sets_are_rooted_compat",
"(",
"one_set",
",",
"other",
")",
":",
"if",
"one_set",
".",
"issubset",
"(",
"other",
")",
"or",
"other",
".",
"issubset",
"(",
"one_set",
")",
":",
"return",
"True",
"return",
"not",
"intersection_not_empty",
"(",
"one_set... | treats the 2 sets are sets of taxon IDs on the same (unstated)
universe of taxon ids.
Returns True clades implied by each are compatible and False otherwise | [
"treats",
"the",
"2",
"sets",
"are",
"sets",
"of",
"taxon",
"IDs",
"on",
"the",
"same",
"(",
"unstated",
")",
"universe",
"of",
"taxon",
"ids",
".",
"Returns",
"True",
"clades",
"implied",
"by",
"each",
"are",
"compatible",
"and",
"False",
"otherwise"
] | python | train |
mrallen1/pygett | pygett/files.py | https://github.com/mrallen1/pygett/blob/1e21f8674a3634a901af054226670174b5ce2d87/pygett/files.py#L108-L130 | def upload_url(self):
"""
This method generates URLs which allow overwriting a file's content with new content. The output is suitable
for use in the ``send_data()`` method below.
Input:
* None
Output:
* A URL (string)
Example::
fil... | [
"def",
"upload_url",
"(",
"self",
")",
":",
"if",
"self",
".",
"put_upload_url",
":",
"return",
"self",
".",
"put_upload_url",
"else",
":",
"response",
"=",
"GettRequest",
"(",
")",
".",
"get",
"(",
"\"/files/%s/%s/upload?accesstoken=%s\"",
"%",
"(",
"self",
... | This method generates URLs which allow overwriting a file's content with new content. The output is suitable
for use in the ``send_data()`` method below.
Input:
* None
Output:
* A URL (string)
Example::
file = client.get_file("4ddfds", 0)
... | [
"This",
"method",
"generates",
"URLs",
"which",
"allow",
"overwriting",
"a",
"file",
"s",
"content",
"with",
"new",
"content",
".",
"The",
"output",
"is",
"suitable",
"for",
"use",
"in",
"the",
"send_data",
"()",
"method",
"below",
"."
] | python | train |
materialsproject/pymatgen | pymatgen/util/coord.py | https://github.com/materialsproject/pymatgen/blob/4ca558cf72f8d5f8a1f21dfdfc0181a971c186da/pymatgen/util/coord.py#L335-L356 | def get_angle(v1, v2, units="degrees"):
"""
Calculates the angle between two vectors.
Args:
v1: Vector 1
v2: Vector 2
units: "degrees" or "radians". Defaults to "degrees".
Returns:
Angle between them in degrees.
"""
d = np.dot(v1, v2) / np.linalg.norm(v1) / np.l... | [
"def",
"get_angle",
"(",
"v1",
",",
"v2",
",",
"units",
"=",
"\"degrees\"",
")",
":",
"d",
"=",
"np",
".",
"dot",
"(",
"v1",
",",
"v2",
")",
"/",
"np",
".",
"linalg",
".",
"norm",
"(",
"v1",
")",
"/",
"np",
".",
"linalg",
".",
"norm",
"(",
... | Calculates the angle between two vectors.
Args:
v1: Vector 1
v2: Vector 2
units: "degrees" or "radians". Defaults to "degrees".
Returns:
Angle between them in degrees. | [
"Calculates",
"the",
"angle",
"between",
"two",
"vectors",
"."
] | python | train |
consbio/ncdjango | ncdjango/geoprocessing/evaluation.py | https://github.com/consbio/ncdjango/blob/f807bfd1e4083ab29fbc3c4d4418be108383a710/ncdjango/geoprocessing/evaluation.py#L349-L357 | def fn_min(self, a, axis=None):
"""
Return the minimum of an array, ignoring any NaNs.
:param a: The array.
:return: The minimum value of the array.
"""
return numpy.nanmin(self._to_ndarray(a), axis=axis) | [
"def",
"fn_min",
"(",
"self",
",",
"a",
",",
"axis",
"=",
"None",
")",
":",
"return",
"numpy",
".",
"nanmin",
"(",
"self",
".",
"_to_ndarray",
"(",
"a",
")",
",",
"axis",
"=",
"axis",
")"
] | Return the minimum of an array, ignoring any NaNs.
:param a: The array.
:return: The minimum value of the array. | [
"Return",
"the",
"minimum",
"of",
"an",
"array",
"ignoring",
"any",
"NaNs",
"."
] | python | train |
swharden/SWHLab | doc/oldcode/swhlab/core/common.py | https://github.com/swharden/SWHLab/blob/a86c3c65323cec809a4bd4f81919644927094bf5/doc/oldcode/swhlab/core/common.py#L875-L882 | def TK_message(title,msg):
"""use the GUI to pop up a message."""
root = tkinter.Tk()
root.withdraw() #hide tk window
root.attributes("-topmost", True) #always on top
root.lift() #bring to top
tkinter.messagebox.showwarning(title, msg)
root.destroy() | [
"def",
"TK_message",
"(",
"title",
",",
"msg",
")",
":",
"root",
"=",
"tkinter",
".",
"Tk",
"(",
")",
"root",
".",
"withdraw",
"(",
")",
"#hide tk window",
"root",
".",
"attributes",
"(",
"\"-topmost\"",
",",
"True",
")",
"#always on top",
"root",
".",
... | use the GUI to pop up a message. | [
"use",
"the",
"GUI",
"to",
"pop",
"up",
"a",
"message",
"."
] | python | valid |
google-research/batch-ppo | agents/tools/batch_env.py | https://github.com/google-research/batch-ppo/blob/3d09705977bae4e7c3eb20339a3b384d2a5531e4/agents/tools/batch_env.py#L101-L118 | def reset(self, indices=None):
"""Reset the environment and convert the resulting observation.
Args:
indices: The batch indices of environments to reset; defaults to all.
Returns:
Batch of observations.
"""
if indices is None:
indices = np.arange(len(self._envs))
if self._blo... | [
"def",
"reset",
"(",
"self",
",",
"indices",
"=",
"None",
")",
":",
"if",
"indices",
"is",
"None",
":",
"indices",
"=",
"np",
".",
"arange",
"(",
"len",
"(",
"self",
".",
"_envs",
")",
")",
"if",
"self",
".",
"_blocking",
":",
"observs",
"=",
"["... | Reset the environment and convert the resulting observation.
Args:
indices: The batch indices of environments to reset; defaults to all.
Returns:
Batch of observations. | [
"Reset",
"the",
"environment",
"and",
"convert",
"the",
"resulting",
"observation",
"."
] | python | train |
numenta/htmresearch | htmresearch/algorithms/lateral_pooler.py | https://github.com/numenta/htmresearch/blob/70c096b09a577ea0432c3f3bfff4442d4871b7aa/htmresearch/algorithms/lateral_pooler.py#L270-L297 | def _adaptSynapses(self, inputVector, activeColumns, overlaps):
"""
The primary method in charge of learning. Adapts the permanence values of
the synapses based on the input vector, and the chosen columns after
inhibition round. Permanence values are increased for synapses connected to
input bits th... | [
"def",
"_adaptSynapses",
"(",
"self",
",",
"inputVector",
",",
"activeColumns",
",",
"overlaps",
")",
":",
"inputIndices",
"=",
"np",
".",
"where",
"(",
"inputVector",
">",
"0",
")",
"[",
"0",
"]",
"permChanges",
"=",
"np",
".",
"zeros",
"(",
"self",
"... | The primary method in charge of learning. Adapts the permanence values of
the synapses based on the input vector, and the chosen columns after
inhibition round. Permanence values are increased for synapses connected to
input bits that are turned on, and decreased for synapses connected to
inputs bits th... | [
"The",
"primary",
"method",
"in",
"charge",
"of",
"learning",
".",
"Adapts",
"the",
"permanence",
"values",
"of",
"the",
"synapses",
"based",
"on",
"the",
"input",
"vector",
"and",
"the",
"chosen",
"columns",
"after",
"inhibition",
"round",
".",
"Permanence",
... | python | train |
chris1610/barnum-proj | barnum/gen_data.py | https://github.com/chris1610/barnum-proj/blob/0a38f24bde66373553d02fbf67b733c1d55ada33/barnum/gen_data.py#L112-L119 | def create_nouns(max=2):
"""
Return a string of random nouns up to max number
"""
nouns = []
for noun in range(0, max):
nouns.append(random.choice(noun_list))
return " ".join(nouns) | [
"def",
"create_nouns",
"(",
"max",
"=",
"2",
")",
":",
"nouns",
"=",
"[",
"]",
"for",
"noun",
"in",
"range",
"(",
"0",
",",
"max",
")",
":",
"nouns",
".",
"append",
"(",
"random",
".",
"choice",
"(",
"noun_list",
")",
")",
"return",
"\" \"",
".",... | Return a string of random nouns up to max number | [
"Return",
"a",
"string",
"of",
"random",
"nouns",
"up",
"to",
"max",
"number"
] | python | train |
ArduPilot/MAVProxy | MAVProxy/modules/mavproxy_gasheli.py | https://github.com/ArduPilot/MAVProxy/blob/f50bdeff33064876f7dc8dc4683d278ff47f75d5/MAVProxy/modules/mavproxy_gasheli.py#L135-L148 | def cmd_gasheli(self, args):
'''gas help commands'''
usage = "Usage: gasheli <start|stop|set>"
if len(args) < 1:
print(usage)
return
if args[0] == "start":
self.start_motor()
elif args[0] == "stop":
self.stop_motor()
elif ar... | [
"def",
"cmd_gasheli",
"(",
"self",
",",
"args",
")",
":",
"usage",
"=",
"\"Usage: gasheli <start|stop|set>\"",
"if",
"len",
"(",
"args",
")",
"<",
"1",
":",
"print",
"(",
"usage",
")",
"return",
"if",
"args",
"[",
"0",
"]",
"==",
"\"start\"",
":",
"sel... | gas help commands | [
"gas",
"help",
"commands"
] | python | train |
ethereum/py-evm | eth/tools/builder/chain/builders.py | https://github.com/ethereum/py-evm/blob/58346848f076116381d3274bbcea96b9e2cfcbdf/eth/tools/builder/chain/builders.py#L453-L486 | def chain_split(*splits: Iterable[Callable[..., Any]]) -> Callable[[BaseChain], Iterable[BaseChain]]: # noqa: E501
"""
Construct and execute multiple concurrent forks of the chain.
Any number of forks may be executed. For each fork, provide an iterable of
commands.
Returns the resulting chain o... | [
"def",
"chain_split",
"(",
"*",
"splits",
":",
"Iterable",
"[",
"Callable",
"[",
"...",
",",
"Any",
"]",
"]",
")",
"->",
"Callable",
"[",
"[",
"BaseChain",
"]",
",",
"Iterable",
"[",
"BaseChain",
"]",
"]",
":",
"# noqa: E501",
"if",
"not",
"splits",
... | Construct and execute multiple concurrent forks of the chain.
Any number of forks may be executed. For each fork, provide an iterable of
commands.
Returns the resulting chain objects for each fork.
.. code-block:: python
chain_a, chain_b = build(
mining_chain,
chain... | [
"Construct",
"and",
"execute",
"multiple",
"concurrent",
"forks",
"of",
"the",
"chain",
"."
] | python | train |
pyrapt/rapt | rapt/treebrd/grammars/core_grammar.py | https://github.com/pyrapt/rapt/blob/0193a07aafff83a887fdc9e5e0f25eafa5b1b205/rapt/treebrd/grammars/core_grammar.py#L161-L166 | def parameter(self, parser):
"""
Return a parser the parses parameters.
"""
return (Suppress(self.syntax.params_start).leaveWhitespace() +
Group(parser) + Suppress(self.syntax.params_stop)) | [
"def",
"parameter",
"(",
"self",
",",
"parser",
")",
":",
"return",
"(",
"Suppress",
"(",
"self",
".",
"syntax",
".",
"params_start",
")",
".",
"leaveWhitespace",
"(",
")",
"+",
"Group",
"(",
"parser",
")",
"+",
"Suppress",
"(",
"self",
".",
"syntax",
... | Return a parser the parses parameters. | [
"Return",
"a",
"parser",
"the",
"parses",
"parameters",
"."
] | python | train |
BerkeleyAutomation/perception | perception/cnn.py | https://github.com/BerkeleyAutomation/perception/blob/03d9b37dd6b66896cdfe173905c9413c8c3c5df6/perception/cnn.py#L141-L146 | def open_session(self):
""" Open tensorflow session. Exposed for memory management. """
with self._graph.as_default():
init = tf.initialize_all_variables()
self._sess = tf.Session()
self._sess.run(init) | [
"def",
"open_session",
"(",
"self",
")",
":",
"with",
"self",
".",
"_graph",
".",
"as_default",
"(",
")",
":",
"init",
"=",
"tf",
".",
"initialize_all_variables",
"(",
")",
"self",
".",
"_sess",
"=",
"tf",
".",
"Session",
"(",
")",
"self",
".",
"_ses... | Open tensorflow session. Exposed for memory management. | [
"Open",
"tensorflow",
"session",
".",
"Exposed",
"for",
"memory",
"management",
"."
] | python | train |
IndicoDataSolutions/IndicoIo-python | indicoio/custom/custom.py | https://github.com/IndicoDataSolutions/IndicoIo-python/blob/6f262a23f09d76fede63d1ccb87f9f7cf2cfc8aa/indicoio/custom/custom.py#L81-L117 | def visualize_explanation(explanation, label=None):
"""
Given the output of the explain() endpoint, produces a terminal visual that plots response strength over a sequence
"""
if not sys.version_info[:2] >= (3, 5):
raise IndicoError("Python >= 3.5+ is required for explanation visualization")
... | [
"def",
"visualize_explanation",
"(",
"explanation",
",",
"label",
"=",
"None",
")",
":",
"if",
"not",
"sys",
".",
"version_info",
"[",
":",
"2",
"]",
">=",
"(",
"3",
",",
"5",
")",
":",
"raise",
"IndicoError",
"(",
"\"Python >= 3.5+ is required for explanati... | Given the output of the explain() endpoint, produces a terminal visual that plots response strength over a sequence | [
"Given",
"the",
"output",
"of",
"the",
"explain",
"()",
"endpoint",
"produces",
"a",
"terminal",
"visual",
"that",
"plots",
"response",
"strength",
"over",
"a",
"sequence"
] | python | train |
thespacedoctor/fundamentals | fundamentals/tools.py | https://github.com/thespacedoctor/fundamentals/blob/1d2c007ac74442ec2eabde771cfcacdb9c1ab382/fundamentals/tools.py#L389-L481 | def _setup_tunnel(
self):
"""
*setup ssh tunnel if required*
"""
from subprocess import Popen, PIPE, STDOUT
import pymysql as ms
# SETUP TUNNEL IF REQUIRED
if "ssh tunnel" in self.settings:
# TEST TUNNEL DOES NOT ALREADY EXIST
... | [
"def",
"_setup_tunnel",
"(",
"self",
")",
":",
"from",
"subprocess",
"import",
"Popen",
",",
"PIPE",
",",
"STDOUT",
"import",
"pymysql",
"as",
"ms",
"# SETUP TUNNEL IF REQUIRED",
"if",
"\"ssh tunnel\"",
"in",
"self",
".",
"settings",
":",
"# TEST TUNNEL DOES NOT A... | *setup ssh tunnel if required* | [
"*",
"setup",
"ssh",
"tunnel",
"if",
"required",
"*"
] | python | train |
openstack/networking-cisco | networking_cisco/plugins/cisco/cfg_agent/service_helpers/routing_svc_helper.py | https://github.com/openstack/networking-cisco/blob/aa58a30aec25b86f9aa5952b0863045975debfa9/networking_cisco/plugins/cisco/cfg_agent/service_helpers/routing_svc_helper.py#L1141-L1163 | def _router_added(self, router_id, router):
"""Operations when a router is added.
Create a new RouterInfo object for this router and add it to the
service helpers router_info dictionary. Then `router_added()` is
called on the device driver.
:param router_id: id of the router
... | [
"def",
"_router_added",
"(",
"self",
",",
"router_id",
",",
"router",
")",
":",
"ri",
"=",
"RouterInfo",
"(",
"router_id",
",",
"router",
")",
"driver",
"=",
"self",
".",
"driver_manager",
".",
"set_driver",
"(",
"router",
")",
"if",
"router",
"[",
"ROUT... | Operations when a router is added.
Create a new RouterInfo object for this router and add it to the
service helpers router_info dictionary. Then `router_added()` is
called on the device driver.
:param router_id: id of the router
:param router: router dict
:return: None | [
"Operations",
"when",
"a",
"router",
"is",
"added",
"."
] | python | train |
pyviz/holoviews | holoviews/core/util.py | https://github.com/pyviz/holoviews/blob/ae0dd2f3de448b0ca5e9065aabd6ef8d84c7e655/holoviews/core/util.py#L1520-L1534 | def stream_name_mapping(stream, exclude_params=['name'], reverse=False):
"""
Return a complete dictionary mapping between stream parameter names
to their applicable renames, excluding parameters listed in
exclude_params.
If reverse is True, the mapping is from the renamed strings to the
origina... | [
"def",
"stream_name_mapping",
"(",
"stream",
",",
"exclude_params",
"=",
"[",
"'name'",
"]",
",",
"reverse",
"=",
"False",
")",
":",
"filtered",
"=",
"[",
"k",
"for",
"k",
"in",
"stream",
".",
"params",
"(",
")",
".",
"keys",
"(",
")",
"if",
"k",
"... | Return a complete dictionary mapping between stream parameter names
to their applicable renames, excluding parameters listed in
exclude_params.
If reverse is True, the mapping is from the renamed strings to the
original stream parameter names. | [
"Return",
"a",
"complete",
"dictionary",
"mapping",
"between",
"stream",
"parameter",
"names",
"to",
"their",
"applicable",
"renames",
"excluding",
"parameters",
"listed",
"in",
"exclude_params",
"."
] | python | train |
romanorac/discomll | discomll/dataset.py | https://github.com/romanorac/discomll/blob/a4703daffb2ba3c9f614bc3dbe45ae55884aea00/discomll/dataset.py#L160-L194 | def generate_urls(self, first_url, last_url):
"""
Function generates URLs in split command fashion. If first_url is xaaaaa and last_url is xaaaac, it will automatically generate xaaaab.
"""
first_url = first_url.split("/")
last_url = last_url.split("/")
if first_url[0].lo... | [
"def",
"generate_urls",
"(",
"self",
",",
"first_url",
",",
"last_url",
")",
":",
"first_url",
"=",
"first_url",
".",
"split",
"(",
"\"/\"",
")",
"last_url",
"=",
"last_url",
".",
"split",
"(",
"\"/\"",
")",
"if",
"first_url",
"[",
"0",
"]",
".",
"lowe... | Function generates URLs in split command fashion. If first_url is xaaaaa and last_url is xaaaac, it will automatically generate xaaaab. | [
"Function",
"generates",
"URLs",
"in",
"split",
"command",
"fashion",
".",
"If",
"first_url",
"is",
"xaaaaa",
"and",
"last_url",
"is",
"xaaaac",
"it",
"will",
"automatically",
"generate",
"xaaaab",
"."
] | python | train |
pandas-dev/pandas | pandas/core/sparse/frame.py | https://github.com/pandas-dev/pandas/blob/9feb3ad92cc0397a04b665803a49299ee7aa1037/pandas/core/sparse/frame.py#L809-L817 | def transpose(self, *args, **kwargs):
"""
Returns a DataFrame with the rows/columns switched.
"""
nv.validate_transpose(args, kwargs)
return self._constructor(
self.values.T, index=self.columns, columns=self.index,
default_fill_value=self._default_fill_val... | [
"def",
"transpose",
"(",
"self",
",",
"*",
"args",
",",
"*",
"*",
"kwargs",
")",
":",
"nv",
".",
"validate_transpose",
"(",
"args",
",",
"kwargs",
")",
"return",
"self",
".",
"_constructor",
"(",
"self",
".",
"values",
".",
"T",
",",
"index",
"=",
... | Returns a DataFrame with the rows/columns switched. | [
"Returns",
"a",
"DataFrame",
"with",
"the",
"rows",
"/",
"columns",
"switched",
"."
] | python | train |
lorien/grab | grab/document.py | https://github.com/lorien/grab/blob/8b301db2a08c830245b61c589e58af6234f4db79/grab/document.py#L260-L279 | def copy(self, new_grab=None):
"""
Clone the Response object.
"""
obj = self.__class__()
obj.process_grab(new_grab if new_grab else self.grab)
copy_keys = ('status', 'code', 'head', 'body', 'total_time',
'connect_time', 'name_lookup_time',
... | [
"def",
"copy",
"(",
"self",
",",
"new_grab",
"=",
"None",
")",
":",
"obj",
"=",
"self",
".",
"__class__",
"(",
")",
"obj",
".",
"process_grab",
"(",
"new_grab",
"if",
"new_grab",
"else",
"self",
".",
"grab",
")",
"copy_keys",
"=",
"(",
"'status'",
",... | Clone the Response object. | [
"Clone",
"the",
"Response",
"object",
"."
] | python | train |
Cymmetria/honeycomb | honeycomb/integrationmanager/tasks.py | https://github.com/Cymmetria/honeycomb/blob/33ea91b5cf675000e4e85dd02efe580ea6e95c86/honeycomb/integrationmanager/tasks.py#L61-L66 | def send_alert_to_subscribed_integrations(alert):
"""Send Alert to relevant integrations."""
valid_configured_integrations = get_valid_configured_integrations(alert)
for configured_integration in valid_configured_integrations:
threading.Thread(target=create_integration_alert_and_call_send, args=(al... | [
"def",
"send_alert_to_subscribed_integrations",
"(",
"alert",
")",
":",
"valid_configured_integrations",
"=",
"get_valid_configured_integrations",
"(",
"alert",
")",
"for",
"configured_integration",
"in",
"valid_configured_integrations",
":",
"threading",
".",
"Thread",
"(",
... | Send Alert to relevant integrations. | [
"Send",
"Alert",
"to",
"relevant",
"integrations",
"."
] | python | train |
saltstack/salt | salt/template.py | https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/template.py#L35-L139 | def compile_template(template,
renderers,
default,
blacklist,
whitelist,
saltenv='base',
sls='',
input_data='',
**kwargs):
'''
Take the path to ... | [
"def",
"compile_template",
"(",
"template",
",",
"renderers",
",",
"default",
",",
"blacklist",
",",
"whitelist",
",",
"saltenv",
"=",
"'base'",
",",
"sls",
"=",
"''",
",",
"input_data",
"=",
"''",
",",
"*",
"*",
"kwargs",
")",
":",
"# if any error occurs,... | Take the path to a template and return the high data structure
derived from the template.
Helpers:
:param mask_value:
Mask value for debugging purposes (prevent sensitive information etc)
example: "mask_value="pass*". All "passwd", "password", "pass" will
be masked (as text). | [
"Take",
"the",
"path",
"to",
"a",
"template",
"and",
"return",
"the",
"high",
"data",
"structure",
"derived",
"from",
"the",
"template",
"."
] | python | train |
zeroSteiner/smoke-zephyr | smoke_zephyr/argparse_types.py | https://github.com/zeroSteiner/smoke-zephyr/blob/a6d2498aeacc72ee52e7806f783a4d83d537ffb2/smoke_zephyr/argparse_types.py#L127-L133 | def timespan_type(arg):
"""An argparse type representing a timespan such as 6h for 6 hours."""
try:
arg = parse_timespan(arg)
except ValueError:
raise argparse.ArgumentTypeError("{0} is not a valid time span".format(repr(arg)))
return arg | [
"def",
"timespan_type",
"(",
"arg",
")",
":",
"try",
":",
"arg",
"=",
"parse_timespan",
"(",
"arg",
")",
"except",
"ValueError",
":",
"raise",
"argparse",
".",
"ArgumentTypeError",
"(",
"\"{0} is not a valid time span\"",
".",
"format",
"(",
"repr",
"(",
"arg"... | An argparse type representing a timespan such as 6h for 6 hours. | [
"An",
"argparse",
"type",
"representing",
"a",
"timespan",
"such",
"as",
"6h",
"for",
"6",
"hours",
"."
] | python | train |
Azure/azure-sdk-for-python | azure-servicemanagement-legacy/azure/servicemanagement/servicemanagementservice.py | https://github.com/Azure/azure-sdk-for-python/blob/d7306fde32f60a293a7567678692bdad31e4b667/azure-servicemanagement-legacy/azure/servicemanagement/servicemanagementservice.py#L592-L633 | def change_deployment_configuration(self, service_name, deployment_name,
configuration,
treat_warnings_as_error=False,
mode='Auto', extended_properties=None):
'''
Initiates a change to... | [
"def",
"change_deployment_configuration",
"(",
"self",
",",
"service_name",
",",
"deployment_name",
",",
"configuration",
",",
"treat_warnings_as_error",
"=",
"False",
",",
"mode",
"=",
"'Auto'",
",",
"extended_properties",
"=",
"None",
")",
":",
"_validate_not_none",... | Initiates a change to the deployment configuration.
service_name:
Name of the hosted service.
deployment_name:
The name of the deployment.
configuration:
The base-64 encoded service configuration file for the deployment.
treat_warnings_as_error:
... | [
"Initiates",
"a",
"change",
"to",
"the",
"deployment",
"configuration",
"."
] | python | test |
cltk/cltk | cltk/corpus/readers.py | https://github.com/cltk/cltk/blob/ed9c025b7ec43c949481173251b70e05e4dffd27/cltk/corpus/readers.py#L444-L452 | def lines(self: object, fileids: str, plaintext: bool = True):
"""
Tokenizes documents in the corpus by line
"""
for text in self.texts(fileids, plaintext):
text = re.sub(r'\n\s*\n', '\n', text, re.MULTILINE) # Remove blank lines
for line in text.split('\n'):
... | [
"def",
"lines",
"(",
"self",
":",
"object",
",",
"fileids",
":",
"str",
",",
"plaintext",
":",
"bool",
"=",
"True",
")",
":",
"for",
"text",
"in",
"self",
".",
"texts",
"(",
"fileids",
",",
"plaintext",
")",
":",
"text",
"=",
"re",
".",
"sub",
"(... | Tokenizes documents in the corpus by line | [
"Tokenizes",
"documents",
"in",
"the",
"corpus",
"by",
"line"
] | python | train |
iterative/dvc | dvc/remote/ssh/connection.py | https://github.com/iterative/dvc/blob/8bb21261e34c9632453e09090de7ebe50e38d341/dvc/remote/ssh/connection.py#L31-L38 | def percent_cb(name, complete, total):
""" Callback for updating target progress """
logger.debug(
"{}: {} transferred out of {}".format(
name, sizeof_fmt(complete), sizeof_fmt(total)
)
)
progress.update_target(name, complete, total) | [
"def",
"percent_cb",
"(",
"name",
",",
"complete",
",",
"total",
")",
":",
"logger",
".",
"debug",
"(",
"\"{}: {} transferred out of {}\"",
".",
"format",
"(",
"name",
",",
"sizeof_fmt",
"(",
"complete",
")",
",",
"sizeof_fmt",
"(",
"total",
")",
")",
")",... | Callback for updating target progress | [
"Callback",
"for",
"updating",
"target",
"progress"
] | python | train |
marcinmiklitz/pywindow | pywindow/trajectory.py | https://github.com/marcinmiklitz/pywindow/blob/e5264812157224f22a691741ca2e0aefdc9bd2eb/pywindow/trajectory.py#L943-L1034 | def analysis(self, frames='all', ncpus=1, override=False, **kwargs):
"""
Perform structural analysis on a frame/ set of frames.
Depending on the passed parameters a frame, a list of particular
frames, a range of frames (from, to), or all frames can be analysed
with this function... | [
"def",
"analysis",
"(",
"self",
",",
"frames",
"=",
"'all'",
",",
"ncpus",
"=",
"1",
",",
"override",
"=",
"False",
",",
"*",
"*",
"kwargs",
")",
":",
"if",
"override",
"is",
"True",
":",
"self",
".",
"analysis_output",
"=",
"{",
"}",
"if",
"isinst... | Perform structural analysis on a frame/ set of frames.
Depending on the passed parameters a frame, a list of particular
frames, a range of frames (from, to), or all frames can be analysed
with this function.
The analysis is performed on each frame and each discrete molecule in
... | [
"Perform",
"structural",
"analysis",
"on",
"a",
"frame",
"/",
"set",
"of",
"frames",
"."
] | python | train |
Laufire/ec | ec/modules/helpers.py | https://github.com/Laufire/ec/blob/63e84a1daef9234487d7de538e5da233a7d13071/ec/modules/helpers.py#L164-L179 | def reconfigArg(ArgConfig):
r"""Reconfigures an argument based on its configuration.
"""
_type = ArgConfig.get('type')
if _type:
if hasattr(_type, '__ec_config__'): # pass the ArgConfig to the CustomType:
_type.__ec_config__(ArgConfig)
if not 'type_str' in ArgConfig:
ArgConfig['type_str'] = (_... | [
"def",
"reconfigArg",
"(",
"ArgConfig",
")",
":",
"_type",
"=",
"ArgConfig",
".",
"get",
"(",
"'type'",
")",
"if",
"_type",
":",
"if",
"hasattr",
"(",
"_type",
",",
"'__ec_config__'",
")",
":",
"# pass the ArgConfig to the CustomType:",
"_type",
".",
"__ec_con... | r"""Reconfigures an argument based on its configuration. | [
"r",
"Reconfigures",
"an",
"argument",
"based",
"on",
"its",
"configuration",
"."
] | python | train |
costastf/locationsharinglib | _CI/library/patch.py | https://github.com/costastf/locationsharinglib/blob/dcd74b0cdb59b951345df84987238763e50ef282/_CI/library/patch.py#L804-L821 | def findfile(self, old, new):
""" return name of file to be patched or None """
if exists(old):
return old
elif exists(new):
return new
else:
# [w] Google Code generates broken patches with its online editor
debug("broken patch from Google Code, stripping prefixes..")
if ol... | [
"def",
"findfile",
"(",
"self",
",",
"old",
",",
"new",
")",
":",
"if",
"exists",
"(",
"old",
")",
":",
"return",
"old",
"elif",
"exists",
"(",
"new",
")",
":",
"return",
"new",
"else",
":",
"# [w] Google Code generates broken patches with its online editor",
... | return name of file to be patched or None | [
"return",
"name",
"of",
"file",
"to",
"be",
"patched",
"or",
"None"
] | python | train |
spdx/tools-python | spdx/parsers/tagvalue.py | https://github.com/spdx/tools-python/blob/301d72f6ae57c832c1da7f6402fa49b192de6810/spdx/parsers/tagvalue.py#L1126-L1141 | def p_annotation_type_1(self, p):
"""annotation_type : ANNOTATION_TYPE LINE"""
try:
if six.PY2:
value = p[2].decode(encoding='utf-8')
else:
value = p[2]
self.builder.add_annotation_type(self.document, value)
except CardinalityEr... | [
"def",
"p_annotation_type_1",
"(",
"self",
",",
"p",
")",
":",
"try",
":",
"if",
"six",
".",
"PY2",
":",
"value",
"=",
"p",
"[",
"2",
"]",
".",
"decode",
"(",
"encoding",
"=",
"'utf-8'",
")",
"else",
":",
"value",
"=",
"p",
"[",
"2",
"]",
"self... | annotation_type : ANNOTATION_TYPE LINE | [
"annotation_type",
":",
"ANNOTATION_TYPE",
"LINE"
] | python | valid |
TUNE-Archive/freight_forwarder | freight_forwarder/container/host_config.py | https://github.com/TUNE-Archive/freight_forwarder/blob/6ea4a49f474ec04abb8bb81b175c774a16b5312f/freight_forwarder/container/host_config.py#L525-L548 | def extra_hosts(self, value):
"""
:param value:
:return None:
"""
if value is None:
self._extra_hosts = value
elif isinstance(value, list):
# TODO: better validation
self._extra_hosts = value
elif isinstance(value, dict):
... | [
"def",
"extra_hosts",
"(",
"self",
",",
"value",
")",
":",
"if",
"value",
"is",
"None",
":",
"self",
".",
"_extra_hosts",
"=",
"value",
"elif",
"isinstance",
"(",
"value",
",",
"list",
")",
":",
"# TODO: better validation",
"self",
".",
"_extra_hosts",
"="... | :param value:
:return None: | [
":",
"param",
"value",
":",
":",
"return",
"None",
":"
] | python | train |
pyca/pyopenssl | src/OpenSSL/crypto.py | https://github.com/pyca/pyopenssl/blob/1fbe064c50fd030948141d7d630673761525b0d0/src/OpenSSL/crypto.py#L2677-L2707 | def load_publickey(type, buffer):
"""
Load a public key from a buffer.
:param type: The file type (one of :data:`FILETYPE_PEM`,
:data:`FILETYPE_ASN1`).
:param buffer: The buffer the key is stored in.
:type buffer: A Python string object, either unicode or bytestring.
:return: The PKey o... | [
"def",
"load_publickey",
"(",
"type",
",",
"buffer",
")",
":",
"if",
"isinstance",
"(",
"buffer",
",",
"_text_type",
")",
":",
"buffer",
"=",
"buffer",
".",
"encode",
"(",
"\"ascii\"",
")",
"bio",
"=",
"_new_mem_buf",
"(",
"buffer",
")",
"if",
"type",
... | Load a public key from a buffer.
:param type: The file type (one of :data:`FILETYPE_PEM`,
:data:`FILETYPE_ASN1`).
:param buffer: The buffer the key is stored in.
:type buffer: A Python string object, either unicode or bytestring.
:return: The PKey object.
:rtype: :class:`PKey` | [
"Load",
"a",
"public",
"key",
"from",
"a",
"buffer",
"."
] | python | test |
BDNYC/astrodbkit | astrodbkit/astrodb.py | https://github.com/BDNYC/astrodbkit/blob/02c03c5e91aa7c7b0f3b5fa95bcf71e33ffcee09/astrodbkit/astrodb.py#L660-L683 | def close(self, silent=False):
"""
Close the database and ask to save and delete the file
Parameters
----------
silent: bool
Close quietly without saving or deleting (Default: False).
"""
if not silent:
saveme = get_input("Save database co... | [
"def",
"close",
"(",
"self",
",",
"silent",
"=",
"False",
")",
":",
"if",
"not",
"silent",
":",
"saveme",
"=",
"get_input",
"(",
"\"Save database contents to '{}/'? (y, [n]) \\n\"",
"\"To save elsewhere, run db.save() before closing. \"",
".",
"format",
"(",
"self",
"... | Close the database and ask to save and delete the file
Parameters
----------
silent: bool
Close quietly without saving or deleting (Default: False). | [
"Close",
"the",
"database",
"and",
"ask",
"to",
"save",
"and",
"delete",
"the",
"file"
] | python | train |
ska-sa/montblanc | montblanc/impl/rime/tensorflow/sources/fits_beam_source_provider.py | https://github.com/ska-sa/montblanc/blob/8a2e742e7500bcc6196489b735f87b233075dd2d/montblanc/impl/rime/tensorflow/sources/fits_beam_source_provider.py#L237-L261 | def _create_axes(filenames, file_dict):
""" Create a FitsAxes object """
try:
# Loop through the file_dictionary, finding the
# first open FITS file.
f = iter(f for tup in file_dict.itervalues()
for f in tup if f is not None).next()
except StopIteration as e:
rai... | [
"def",
"_create_axes",
"(",
"filenames",
",",
"file_dict",
")",
":",
"try",
":",
"# Loop through the file_dictionary, finding the",
"# first open FITS file.",
"f",
"=",
"iter",
"(",
"f",
"for",
"tup",
"in",
"file_dict",
".",
"itervalues",
"(",
")",
"for",
"f",
"... | Create a FitsAxes object | [
"Create",
"a",
"FitsAxes",
"object"
] | python | train |
rene-aguirre/pywinusb | pywinusb/hid/core.py | https://github.com/rene-aguirre/pywinusb/blob/954c4b2105d9f01cb0c50e24500bb747d4ecdc43/pywinusb/hid/core.py#L1571-L1609 | def show_hids(target_vid = 0, target_pid = 0, output = None):
"""Check all HID devices conected to PC hosts."""
# first be kind with local encodings
if not output:
# beware your script should manage encodings
output = sys.stdout
# then the big cheese...
from . import tools
... | [
"def",
"show_hids",
"(",
"target_vid",
"=",
"0",
",",
"target_pid",
"=",
"0",
",",
"output",
"=",
"None",
")",
":",
"# first be kind with local encodings\r",
"if",
"not",
"output",
":",
"# beware your script should manage encodings\r",
"output",
"=",
"sys",
".",
"... | Check all HID devices conected to PC hosts. | [
"Check",
"all",
"HID",
"devices",
"conected",
"to",
"PC",
"hosts",
"."
] | python | train |
Erotemic/utool | utool/util_inspect.py | https://github.com/Erotemic/utool/blob/3b27e1f4e6e6fb23cd8744af7b7195b57d99e03a/utool/util_inspect.py#L2270-L2423 | def get_func_sourcecode(func, stripdef=False, stripret=False,
strip_docstr=False, strip_comments=False,
remove_linenums=None):
"""
wrapper around inspect.getsource but takes into account utool decorators
strip flags are very hacky as of now
Args:
... | [
"def",
"get_func_sourcecode",
"(",
"func",
",",
"stripdef",
"=",
"False",
",",
"stripret",
"=",
"False",
",",
"strip_docstr",
"=",
"False",
",",
"strip_comments",
"=",
"False",
",",
"remove_linenums",
"=",
"None",
")",
":",
"import",
"utool",
"as",
"ut",
"... | wrapper around inspect.getsource but takes into account utool decorators
strip flags are very hacky as of now
Args:
func (function):
stripdef (bool):
stripret (bool): (default = False)
strip_docstr (bool): (default = False)
strip_comments (bool): (default = False)
... | [
"wrapper",
"around",
"inspect",
".",
"getsource",
"but",
"takes",
"into",
"account",
"utool",
"decorators",
"strip",
"flags",
"are",
"very",
"hacky",
"as",
"of",
"now"
] | python | train |
stevearc/dql | dql/cli.py | https://github.com/stevearc/dql/blob/e9d3aa22873076dae5ebd02e35318aa996b1e56a/dql/cli.py#L165-L204 | def initialize(
self, region="us-west-1", host=None, port=8000, config_dir=None, session=None
):
""" Set up the repl for execution. """
try:
import readline
import rlcompleter
except ImportError:
# Windows doesn't have readline, so gracefully ignor... | [
"def",
"initialize",
"(",
"self",
",",
"region",
"=",
"\"us-west-1\"",
",",
"host",
"=",
"None",
",",
"port",
"=",
"8000",
",",
"config_dir",
"=",
"None",
",",
"session",
"=",
"None",
")",
":",
"try",
":",
"import",
"readline",
"import",
"rlcompleter",
... | Set up the repl for execution. | [
"Set",
"up",
"the",
"repl",
"for",
"execution",
"."
] | python | train |
csirtgadgets/csirtgsdk-py | csirtgsdk/indicator.py | https://github.com/csirtgadgets/csirtgsdk-py/blob/5a7ed9c5e6fa27170366ecbdef710dc80d537dc2/csirtgsdk/indicator.py#L116-L146 | def create(self):
"""
Submit action on the Indicator object
:return: Indicator Object
"""
uri = '/users/{0}/feeds/{1}/indicators'\
.format(self.user, self.feed)
data = {
"indicator": json.loads(str(self.indicator)),
"comment": self.co... | [
"def",
"create",
"(",
"self",
")",
":",
"uri",
"=",
"'/users/{0}/feeds/{1}/indicators'",
".",
"format",
"(",
"self",
".",
"user",
",",
"self",
".",
"feed",
")",
"data",
"=",
"{",
"\"indicator\"",
":",
"json",
".",
"loads",
"(",
"str",
"(",
"self",
".",... | Submit action on the Indicator object
:return: Indicator Object | [
"Submit",
"action",
"on",
"the",
"Indicator",
"object"
] | python | train |
bcbio/bcbio-nextgen | bcbio/variation/sentieon.py | https://github.com/bcbio/bcbio-nextgen/blob/6a9348c0054ccd5baffd22f1bb7d0422f6978b20/bcbio/variation/sentieon.py#L137-L149 | def run_gvcftyper(vrn_files, out_file, region, data):
"""Produce joint called variants from input gVCF files.
"""
if not utils.file_exists(out_file):
with file_transaction(data, out_file) as tx_out_file:
license = license_export(data)
ref_file = dd.get_ref_file(data)
... | [
"def",
"run_gvcftyper",
"(",
"vrn_files",
",",
"out_file",
",",
"region",
",",
"data",
")",
":",
"if",
"not",
"utils",
".",
"file_exists",
"(",
"out_file",
")",
":",
"with",
"file_transaction",
"(",
"data",
",",
"out_file",
")",
"as",
"tx_out_file",
":",
... | Produce joint called variants from input gVCF files. | [
"Produce",
"joint",
"called",
"variants",
"from",
"input",
"gVCF",
"files",
"."
] | python | train |
pandas-dev/pandas | pandas/io/pytables.py | https://github.com/pandas-dev/pandas/blob/9feb3ad92cc0397a04b665803a49299ee7aa1037/pandas/io/pytables.py#L3872-L3880 | def read(self, where=None, columns=None, **kwargs):
"""we have n indexable columns, with an arbitrary number of data
axes
"""
if not self.read_axes(where=where, **kwargs):
return None
raise NotImplementedError("Panel is removed in pandas 0.25.0") | [
"def",
"read",
"(",
"self",
",",
"where",
"=",
"None",
",",
"columns",
"=",
"None",
",",
"*",
"*",
"kwargs",
")",
":",
"if",
"not",
"self",
".",
"read_axes",
"(",
"where",
"=",
"where",
",",
"*",
"*",
"kwargs",
")",
":",
"return",
"None",
"raise"... | we have n indexable columns, with an arbitrary number of data
axes | [
"we",
"have",
"n",
"indexable",
"columns",
"with",
"an",
"arbitrary",
"number",
"of",
"data",
"axes"
] | python | train |
pgjones/quart | quart/config.py | https://github.com/pgjones/quart/blob/7cb2d3bd98e8746025764f2b933abc12041fa175/quart/config.py#L181-L203 | def from_json(self, filename: str, silent: bool=False) -> None:
"""Load the configuration values from a JSON formatted file.
This allows configuration to be loaded as so
.. code-block:: python
app.config.from_json('config.json')
Arguments:
filename: The filena... | [
"def",
"from_json",
"(",
"self",
",",
"filename",
":",
"str",
",",
"silent",
":",
"bool",
"=",
"False",
")",
"->",
"None",
":",
"file_path",
"=",
"self",
".",
"root_path",
"/",
"filename",
"try",
":",
"with",
"open",
"(",
"file_path",
")",
"as",
"fil... | Load the configuration values from a JSON formatted file.
This allows configuration to be loaded as so
.. code-block:: python
app.config.from_json('config.json')
Arguments:
filename: The filename which when appended to
:attr:`root_path` gives the path ... | [
"Load",
"the",
"configuration",
"values",
"from",
"a",
"JSON",
"formatted",
"file",
"."
] | python | train |
lionheart/django-pyodbc | django_pyodbc/introspection.py | https://github.com/lionheart/django-pyodbc/blob/46adda7b0bfabfa2640f72592c6f6f407f78b363/django_pyodbc/introspection.py#L221-L260 | def get_key_columns(self, cursor, table_name):
"""
Backends can override this to return a list of (column_name, referenced_table_name,
referenced_column_name) for all key columns in given table.
"""
source_field_dict = self._name_to_index(cursor, table_name)
sql = """
se... | [
"def",
"get_key_columns",
"(",
"self",
",",
"cursor",
",",
"table_name",
")",
":",
"source_field_dict",
"=",
"self",
".",
"_name_to_index",
"(",
"cursor",
",",
"table_name",
")",
"sql",
"=",
"\"\"\"\nselect\n COLUMN_NAME = fk_cols.COLUMN_NAME,\n REFERENCED_TABLE_NAM... | Backends can override this to return a list of (column_name, referenced_table_name,
referenced_column_name) for all key columns in given table. | [
"Backends",
"can",
"override",
"this",
"to",
"return",
"a",
"list",
"of",
"(",
"column_name",
"referenced_table_name",
"referenced_column_name",
")",
"for",
"all",
"key",
"columns",
"in",
"given",
"table",
"."
] | python | train |
sveetch/py-css-styleguide | py_css_styleguide/model.py | https://github.com/sveetch/py-css-styleguide/blob/5acc693f71b2fa7d944d7fed561ae0a7699ccd0f/py_css_styleguide/model.py#L89-L98 | def set_rule(self, name, properties):
"""
Set a rules as object attribute.
Arguments:
name (string): Rule name to set as attribute name.
properties (dict): Dictionnary of properties.
"""
self._rule_attrs.append(name)
setattr(self, name, properties... | [
"def",
"set_rule",
"(",
"self",
",",
"name",
",",
"properties",
")",
":",
"self",
".",
"_rule_attrs",
".",
"append",
"(",
"name",
")",
"setattr",
"(",
"self",
",",
"name",
",",
"properties",
")"
] | Set a rules as object attribute.
Arguments:
name (string): Rule name to set as attribute name.
properties (dict): Dictionnary of properties. | [
"Set",
"a",
"rules",
"as",
"object",
"attribute",
"."
] | python | train |
mushkevych/scheduler | synergy/scheduler/tree_node.py | https://github.com/mushkevych/scheduler/blob/6740331360f49083c208085fb5a60ce80ebf418b/synergy/scheduler/tree_node.py#L51-L66 | def is_finalizable(self):
"""method checks whether:
- all counterpart of this node in dependent_on trees are finished
- all direct children of the node are finished
- the node itself is in active state"""
composite_state = self.dependent_on_composite_state()
if not co... | [
"def",
"is_finalizable",
"(",
"self",
")",
":",
"composite_state",
"=",
"self",
".",
"dependent_on_composite_state",
"(",
")",
"if",
"not",
"composite_state",
".",
"all_finished",
":",
"return",
"False",
"if",
"self",
".",
"job_record",
"is",
"None",
":",
"sel... | method checks whether:
- all counterpart of this node in dependent_on trees are finished
- all direct children of the node are finished
- the node itself is in active state | [
"method",
"checks",
"whether",
":",
"-",
"all",
"counterpart",
"of",
"this",
"node",
"in",
"dependent_on",
"trees",
"are",
"finished",
"-",
"all",
"direct",
"children",
"of",
"the",
"node",
"are",
"finished",
"-",
"the",
"node",
"itself",
"is",
"in",
"acti... | python | train |
i3visio/osrframework | osrframework/thirdparties/pipl_com/lib/fields.py | https://github.com/i3visio/osrframework/blob/83437f4c14c9c08cb80a896bd9834c77f6567871/osrframework/thirdparties/pipl_com/lib/fields.py#L345-L350 | def to_dict(self):
"""Extend Field.to_dict, take the display_international attribute."""
d = Field.to_dict(self)
if self.display_international:
d['display_international'] = self.display_international
return d | [
"def",
"to_dict",
"(",
"self",
")",
":",
"d",
"=",
"Field",
".",
"to_dict",
"(",
"self",
")",
"if",
"self",
".",
"display_international",
":",
"d",
"[",
"'display_international'",
"]",
"=",
"self",
".",
"display_international",
"return",
"d"
] | Extend Field.to_dict, take the display_international attribute. | [
"Extend",
"Field",
".",
"to_dict",
"take",
"the",
"display_international",
"attribute",
"."
] | python | train |
spyder-ide/spyder | spyder/plugins/help/utils/sphinxify.py | https://github.com/spyder-ide/spyder/blob/f76836ce1b924bcc4efd3f74f2960d26a4e528e0/spyder/plugins/help/utils/sphinxify.py#L77-L82 | def warning(message, css_path=CSS_PATH):
"""Print a warning message on the rich text view"""
env = Environment()
env.loader = FileSystemLoader(osp.join(CONFDIR_PATH, 'templates'))
warning = env.get_template("warning.html")
return warning.render(css_path=css_path, text=message) | [
"def",
"warning",
"(",
"message",
",",
"css_path",
"=",
"CSS_PATH",
")",
":",
"env",
"=",
"Environment",
"(",
")",
"env",
".",
"loader",
"=",
"FileSystemLoader",
"(",
"osp",
".",
"join",
"(",
"CONFDIR_PATH",
",",
"'templates'",
")",
")",
"warning",
"=",
... | Print a warning message on the rich text view | [
"Print",
"a",
"warning",
"message",
"on",
"the",
"rich",
"text",
"view"
] | python | train |
hannes-brt/hebel | hebel/pycuda_ops/cudart.py | https://github.com/hannes-brt/hebel/blob/1e2c3a9309c2646103901b26a55be4e312dd5005/hebel/pycuda_ops/cudart.py#L686-L703 | def cudaDriverGetVersion():
"""
Get installed CUDA driver version.
Return the version of the installed CUDA driver as an integer. If
no driver is detected, 0 is returned.
Returns
-------
version : int
Driver version.
"""
version = ctypes.c_int()
status = _libcudart.cu... | [
"def",
"cudaDriverGetVersion",
"(",
")",
":",
"version",
"=",
"ctypes",
".",
"c_int",
"(",
")",
"status",
"=",
"_libcudart",
".",
"cudaDriverGetVersion",
"(",
"ctypes",
".",
"byref",
"(",
"version",
")",
")",
"cudaCheckStatus",
"(",
"status",
")",
"return",
... | Get installed CUDA driver version.
Return the version of the installed CUDA driver as an integer. If
no driver is detected, 0 is returned.
Returns
-------
version : int
Driver version. | [
"Get",
"installed",
"CUDA",
"driver",
"version",
"."
] | python | train |
tensorflow/probability | tensorflow_probability/python/internal/distribution_util.py | https://github.com/tensorflow/probability/blob/e87fe34111d68c35db0f9eeb4935f1ece9e1a8f5/tensorflow_probability/python/internal/distribution_util.py#L1415-L1561 | def fill_triangular(x, upper=False, name=None):
r"""Creates a (batch of) triangular matrix from a vector of inputs.
Created matrix can be lower- or upper-triangular. (It is more efficient to
create the matrix as upper or lower, rather than transpose.)
Triangular matrix elements are filled in a clockwise spira... | [
"def",
"fill_triangular",
"(",
"x",
",",
"upper",
"=",
"False",
",",
"name",
"=",
"None",
")",
":",
"with",
"tf",
".",
"name_scope",
"(",
"name",
"or",
"\"fill_triangular\"",
")",
":",
"x",
"=",
"tf",
".",
"convert_to_tensor",
"(",
"value",
"=",
"x",
... | r"""Creates a (batch of) triangular matrix from a vector of inputs.
Created matrix can be lower- or upper-triangular. (It is more efficient to
create the matrix as upper or lower, rather than transpose.)
Triangular matrix elements are filled in a clockwise spiral. See example,
below.
If `x.shape` is `[b1, ... | [
"r",
"Creates",
"a",
"(",
"batch",
"of",
")",
"triangular",
"matrix",
"from",
"a",
"vector",
"of",
"inputs",
"."
] | python | test |
Robin8Put/pmes | balance/handler.py | https://github.com/Robin8Put/pmes/blob/338bec94162098f05b75bad035417317e1252fd2/balance/handler.py#L794-L836 | async def get_wallets(self, *args, **kwargs):
"""
Get users wallets by uid
Accepts:
- uid [integer] (users id)
Returns a list:
- [
{
"address": [string],
"uid": [integer],
"amount_active": [integer],
"amount_frozen": [integer]
},
]
"""
logging.debug("\n [+] -- G... | [
"async",
"def",
"get_wallets",
"(",
"self",
",",
"*",
"args",
",",
"*",
"*",
"kwargs",
")",
":",
"logging",
".",
"debug",
"(",
"\"\\n [+] -- Get wallets debugging.\"",
")",
"if",
"kwargs",
".",
"get",
"(",
"\"message\"",
")",
":",
"kwargs",
"=",
"json",
... | Get users wallets by uid
Accepts:
- uid [integer] (users id)
Returns a list:
- [
{
"address": [string],
"uid": [integer],
"amount_active": [integer],
"amount_frozen": [integer]
},
] | [
"Get",
"users",
"wallets",
"by",
"uid"
] | python | train |
rigetti/pyquil | pyquil/api/_base_connection.py | https://github.com/rigetti/pyquil/blob/ec98e453084b0037d69d8c3245f6822a5422593d/pyquil/api/_base_connection.py#L52-L59 | def post_json(session, url, json):
"""
Post JSON to the Forest endpoint.
"""
res = session.post(url, json=json)
if res.status_code >= 400:
raise parse_error(res)
return res | [
"def",
"post_json",
"(",
"session",
",",
"url",
",",
"json",
")",
":",
"res",
"=",
"session",
".",
"post",
"(",
"url",
",",
"json",
"=",
"json",
")",
"if",
"res",
".",
"status_code",
">=",
"400",
":",
"raise",
"parse_error",
"(",
"res",
")",
"retur... | Post JSON to the Forest endpoint. | [
"Post",
"JSON",
"to",
"the",
"Forest",
"endpoint",
"."
] | python | train |
bitesofcode/projexui | projexui/widgets/xorbbrowserwidget/xorbquerywidget.py | https://github.com/bitesofcode/projexui/blob/f18a73bec84df90b034ca69b9deea118dbedfc4d/projexui/widgets/xorbbrowserwidget/xorbquerywidget.py#L172-L186 | def setModelData( self, editor, model, index ):
"""
Sets the data for the given index from the editor's value.
:param editor | <QWidget>
model | <QAbstractItemModel>
index | <QModelIndex>
"""
tree = self.paren... | [
"def",
"setModelData",
"(",
"self",
",",
"editor",
",",
"model",
",",
"index",
")",
":",
"tree",
"=",
"self",
".",
"parent",
"(",
")",
"querywidget",
"=",
"tree",
".",
"parent",
"(",
")",
"factory",
"=",
"querywidget",
".",
"factory",
"(",
")",
"item... | Sets the data for the given index from the editor's value.
:param editor | <QWidget>
model | <QAbstractItemModel>
index | <QModelIndex> | [
"Sets",
"the",
"data",
"for",
"the",
"given",
"index",
"from",
"the",
"editor",
"s",
"value",
".",
":",
"param",
"editor",
"|",
"<QWidget",
">",
"model",
"|",
"<QAbstractItemModel",
">",
"index",
"|",
"<QModelIndex",
">"
] | python | train |
romana/vpc-router | vpcrouter/monitor/plugins/multi.py | https://github.com/romana/vpc-router/blob/d696c2e023f1111ceb61f9c6fbabfafed8e14040/vpcrouter/monitor/plugins/multi.py#L187-L203 | def get_info(self):
"""
Return plugin information.
"""
plugin_infos = {}
for pc in self.plugins:
plugin_infos.update(pc.get_info())
return {
self.get_plugin_name() : {
"version" : self.get_version(),
"sub-plugin... | [
"def",
"get_info",
"(",
"self",
")",
":",
"plugin_infos",
"=",
"{",
"}",
"for",
"pc",
"in",
"self",
".",
"plugins",
":",
"plugin_infos",
".",
"update",
"(",
"pc",
".",
"get_info",
"(",
")",
")",
"return",
"{",
"self",
".",
"get_plugin_name",
"(",
")"... | Return plugin information. | [
"Return",
"plugin",
"information",
"."
] | python | train |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.