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titusjan/argos
argos/qt/registrytable.py
https://github.com/titusjan/argos/blob/20d0a3cae26c36ea789a5d219c02ca7df21279dd/argos/qt/registrytable.py#L184-L188
def itemFromIndex(self, index): """ Gets the item given the model index """ sourceIndex = self.mapToSource(index) return self.sourceModel().itemFromIndex(sourceIndex)
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Gets the item given the model index
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python
train
Mollom/mollom_python
mollom/mollom.py
https://github.com/Mollom/mollom_python/blob/dfacb63fd79f82c0eabde76b511116df5b51d6f1/mollom/mollom.py#L211-L246
def check_captcha(self, captcha_id, solution, author_name=None, author_url=None, author_mail=None, author_ip=None, author_id=None, author_o...
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Checks a CAPTCHA that was solved by the end-user. Keyword arguments: captcha_id -- Unique identifier of the CAPTCHA solved. solution -- Solution provided by the end-user for the CAPTCHA. author_name -- The name of the content author. author_url -- The homepage/website URL of the...
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python
train
kakwa/ldapcherry
ldapcherry/backend/backendLdap.py
https://github.com/kakwa/ldapcherry/blob/b5e7cb6a44065abc30d164e72981b3713a172dda/ldapcherry/backend/backendLdap.py#L194-L238
def _connect(self): """Initialize an ldap client""" ldap_client = ldap.initialize(self.uri) ldap.set_option(ldap.OPT_REFERRALS, 0) ldap.set_option(ldap.OPT_TIMEOUT, self.timeout) if self.starttls == 'on': ldap.set_option(ldap.OPT_X_TLS_DEMAND, True) else: ...
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Initialize an ldap client
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python
train
pypa/pipenv
pipenv/vendor/jinja2/ext.py
https://github.com/pypa/pipenv/blob/cae8d76c210b9777e90aab76e9c4b0e53bb19cde/pipenv/vendor/jinja2/ext.py#L119-L129
def call_method(self, name, args=None, kwargs=None, dyn_args=None, dyn_kwargs=None, lineno=None): """Call a method of the extension. This is a shortcut for :meth:`attr` + :class:`jinja2.nodes.Call`. """ if args is None: args = [] if kwargs is None...
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Call a method of the extension. This is a shortcut for :meth:`attr` + :class:`jinja2.nodes.Call`.
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python
train
fossasia/AYABInterface
AYABInterface/interaction.py
https://github.com/fossasia/AYABInterface/blob/e2065eed8daf17b2936f6ca5e488c9bfb850914e/AYABInterface/interaction.py#L47-L59
def communicate_through(self, file): """Setup communication through a file. :rtype: AYABInterface.communication.Communication """ if self._communication is not None: raise ValueError("Already communicating.") self._communication = communication = Communication( ...
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Setup communication through a file. :rtype: AYABInterface.communication.Communication
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python
train
hsolbrig/pyjsg
pyjsg/jsglib/jsg_object.py
https://github.com/hsolbrig/pyjsg/blob/9b2b8fa8e3b8448abe70b09f804a79f0f31b32b7/pyjsg/jsglib/jsg_object.py#L133-L140
def _default(self, obj: object): """ Return a serializable version of obj. Overrides JsonObj _default method :param obj: Object to be serialized :return: Serialized version of obj """ return None if obj is JSGNull else obj.val if type(obj) is AnyType else \ JSGObject....
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Return a serializable version of obj. Overrides JsonObj _default method :param obj: Object to be serialized :return: Serialized version of obj
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python
train
rocky/python3-trepan
trepan/processor/command/base_submgr.py
https://github.com/rocky/python3-trepan/blob/14e91bc0acce090d67be145b1ac040cab92ac5f3/trepan/processor/command/base_submgr.py#L107-L162
def help(self, args): """Give help for a command which has subcommands. This can be called in several ways: help cmd help cmd subcmd help cmd commands Our shtick is to give help for the overall command only if subcommand or 'commands' is not given. If...
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Give help for a command which has subcommands. This can be called in several ways: help cmd help cmd subcmd help cmd commands Our shtick is to give help for the overall command only if subcommand or 'commands' is not given. If a subcommand is given and ...
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python
test
inspirehep/harvesting-kit
harvestingkit/oup_package.py
https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/oup_package.py#L79-L101
def connect(self): """Logs into the specified ftp server and returns connector.""" for tried_connection_count in range(CFG_FTP_CONNECTION_ATTEMPTS): try: self.ftp = FtpHandler(self.config.OXFORD.URL, self.config.OXFORD.LOGIN, ...
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Logs into the specified ftp server and returns connector.
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python
valid
twilio/twilio-python
twilio/rest/autopilot/v1/assistant/__init__.py
https://github.com/twilio/twilio-python/blob/c867895f55dcc29f522e6e8b8868d0d18483132f/twilio/rest/autopilot/v1/assistant/__init__.py#L388-L397
def defaults(self): """ Access the defaults :returns: twilio.rest.autopilot.v1.assistant.defaults.DefaultsList :rtype: twilio.rest.autopilot.v1.assistant.defaults.DefaultsList """ if self._defaults is None: self._defaults = DefaultsList(self._version, assista...
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Access the defaults :returns: twilio.rest.autopilot.v1.assistant.defaults.DefaultsList :rtype: twilio.rest.autopilot.v1.assistant.defaults.DefaultsList
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python
train
blockstack-packages/blockstack-gpg
blockstack_gpg/gpg.py
https://github.com/blockstack-packages/blockstack-gpg/blob/e4d51e4e51678d9b946596ca9dec53e2d78c8710/blockstack_gpg/gpg.py#L703-L759
def gpg_app_put_key( blockchain_id, appname, keyname, key_data, txid=None, immutable=False, proxy=None, wallet_keys=None, config_dir=None ): """ Put an application GPG key. Stash the private key locally to an app-specific keyring. Return {'status': True, 'key_url': ..., 'key_data': ...} on success ...
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Put an application GPG key. Stash the private key locally to an app-specific keyring. Return {'status': True, 'key_url': ..., 'key_data': ...} on success Return {'error': ...} on error If immutable is True, then store the data as an immutable entry (e.g. update the zonefile with the key hash) ...
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python
train
jupyter-widgets/ipywidgets
ipywidgets/widgets/interaction.py
https://github.com/jupyter-widgets/ipywidgets/blob/36fe37594cd5a268def228709ca27e37b99ac606/ipywidgets/widgets/interaction.py#L341-L354
def widget_from_single_value(o): """Make widgets from single values, which can be used as parameter defaults.""" if isinstance(o, string_types): return Text(value=unicode_type(o)) elif isinstance(o, bool): return Checkbox(value=o) elif isinstance(o, Integral): ...
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Make widgets from single values, which can be used as parameter defaults.
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python
train
WZBSocialScienceCenter/tmtoolkit
tmtoolkit/topicmod/model_stats.py
https://github.com/WZBSocialScienceCenter/tmtoolkit/blob/ca8b9d072e37ccc82b533f47d48bd9755722305b/tmtoolkit/topicmod/model_stats.py#L84-L91
def get_most_salient_words(vocab, topic_word_distrib, doc_topic_distrib, doc_lengths, n=None): """ Order the words from `vocab` by "saliency score" (Chuang et al. 2012) from most to least salient. Optionally only return the `n` most salient words. J. Chuang, C. Manning, J. Heer 2012: "Termite: Visualiz...
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Order the words from `vocab` by "saliency score" (Chuang et al. 2012) from most to least salient. Optionally only return the `n` most salient words. J. Chuang, C. Manning, J. Heer 2012: "Termite: Visualization Techniques for Assessing Textual Topic Models"
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python
train
RiotGames/cloud-inquisitor
plugins/public/cinq-auditor-cloudtrail/cinq_auditor_cloudtrail/__init__.py
https://github.com/RiotGames/cloud-inquisitor/blob/181dc2566ca59fc855f695b7fcc2c3b934e6ee9f/plugins/public/cinq-auditor-cloudtrail/cinq_auditor_cloudtrail/__init__.py#L272-L302
def create_sns_topic(self, region): """Creates an SNS topic if needed. Returns the ARN if the created SNS topic Args: region (str): Region name Returns: `str` """ sns = self.session.client('sns', region_name=region) self.log.info('Creating SNS t...
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Creates an SNS topic if needed. Returns the ARN if the created SNS topic Args: region (str): Region name Returns: `str`
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python
train
SwissDataScienceCenter/renku-python
renku/cli/runner.py
https://github.com/SwissDataScienceCenter/renku-python/blob/691644d695b055a01e0ca22b2620e55bbd928c0d/renku/cli/runner.py#L77-L101
def rerun(client, run, job): """Re-run existing workflow or tool using CWL runner.""" from renku.models.provenance import ProcessRun activity = client.process_commmit() if not isinstance(activity, ProcessRun): click.secho('No tool was found.', fg='red', file=sys.stderr) return try:...
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Re-run existing workflow or tool using CWL runner.
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python
train
biocore/burrito-fillings
bfillings/cd_hit.py
https://github.com/biocore/burrito-fillings/blob/02ab71a46119b40793bd56a4ae00ca15f6dc3329/bfillings/cd_hit.py#L203-L208
def _get_result_paths(self, data): """Return dict of {key: ResultPath}""" result = {} result['FASTA'] = ResultPath(Path=self._get_seqs_outfile()) result['CLSTR'] = ResultPath(Path=self._get_clstr_outfile()) return result
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Return dict of {key: ResultPath}
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python
train
belbio/bel
bel/db/arangodb.py
https://github.com/belbio/bel/blob/60333e8815625b942b4836903f3b618cf44b3771/bel/db/arangodb.py#L62-L87
def get_client(host=None, port=None, username=None, password=None, enable_logging=True): """Get arango client and edgestore db handle""" host = utils.first_true( [host, config["bel_api"]["servers"]["arangodb_host"], "localhost"] ) port = utils.first_true([port, config["bel_api"]["servers"]["ara...
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Get arango client and edgestore db handle
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python
train
watson-developer-cloud/python-sdk
ibm_watson/discovery_v1.py
https://github.com/watson-developer-cloud/python-sdk/blob/4c2c9df4466fcde88975da9ecd834e6ba95eb353/ibm_watson/discovery_v1.py#L6509-L6530
def _to_dict(self): """Return a json dictionary representing this model.""" _dict = {} if hasattr(self, 'exclude_tags_completely' ) and self.exclude_tags_completely is not None: _dict['exclude_tags_completely'] = self.exclude_tags_completely if hasattr(self,...
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Return a json dictionary representing this model.
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python
train
AustralianSynchrotron/lightflow
lightflow/models/dag.py
https://github.com/AustralianSynchrotron/lightflow/blob/dc53dbc1d961e20fb144273baca258060705c03e/lightflow/models/dag.py#L77-L100
def define(self, schema, *, validate=True): """ Store the task graph definition (schema). The schema has to adhere to the following rules: A key in the schema dict represents a parent task and the value one or more children: {parent: [child]} or {parent: [child1, child2]} ...
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Store the task graph definition (schema). The schema has to adhere to the following rules: A key in the schema dict represents a parent task and the value one or more children: {parent: [child]} or {parent: [child1, child2]} The data output of one task can be routed to a l...
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python
train
python/performance
performance/compare.py
https://github.com/python/performance/blob/2a9524c0a5714e85106671bc61d750e800fe17db/performance/compare.py#L89-L103
def tscore(sample1, sample2): """Calculate a t-test score for the difference between two samples. Args: sample1: one sample. sample2: the other sample. Returns: The t-test score, as a float. """ if len(sample1) != len(sample2): raise ValueError("different number of ...
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Calculate a t-test score for the difference between two samples. Args: sample1: one sample. sample2: the other sample. Returns: The t-test score, as a float.
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python
test
oscarlazoarjona/fast
fast/angular_momentum.py
https://github.com/oscarlazoarjona/fast/blob/3e5400672af2a7b7cc616e7f4aa10d7672720222/fast/angular_momentum.py#L365-L416
def spherical_tensor(Ji, Jj, K, Q): ur"""Return a matrix representation of the spherical tensor with quantum numbers $J_i, J_j, K, Q$. >>> from sympy import pprint >>> pprint(spherical_tensor(1, 1, 1, 0)) ⎡-√2 ⎤ ⎢──── 0 0 ⎥ ⎢ 2 ⎥ ⎢ ⎥ ⎢ 0 0 0 ⎥ ⎢ ...
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ur"""Return a matrix representation of the spherical tensor with quantum numbers $J_i, J_j, K, Q$. >>> from sympy import pprint >>> pprint(spherical_tensor(1, 1, 1, 0)) ⎡-√2 ⎤ ⎢──── 0 0 ⎥ ⎢ 2 ⎥ ⎢ ⎥ ⎢ 0 0 0 ⎥ ⎢ ⎥ ⎢ √2⎥ ⎢ 0 0...
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python
train
CellProfiler/centrosome
centrosome/cpmorphology.py
https://github.com/CellProfiler/centrosome/blob/7bd9350a2d4ae1b215b81eabcecfe560bbb1f32a/centrosome/cpmorphology.py#L2479-L2592
def euler_number(labels, indexes=None): """Calculate the Euler number of each label labels - a label matrix indexes - the indexes of the labels to measure or None to treat the labels matrix as a binary matrix """ if indexes is None: labels = labels != 0 indexes = n...
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Calculate the Euler number of each label labels - a label matrix indexes - the indexes of the labels to measure or None to treat the labels matrix as a binary matrix
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python
train
shoebot/shoebot
lib/web/BeautifulSoup.py
https://github.com/shoebot/shoebot/blob/d554c1765c1899fa25727c9fc6805d221585562b/lib/web/BeautifulSoup.py#L278-L282
def findPreviousSibling(self, name=None, attrs={}, text=None, **kwargs): """Returns the closest sibling to this Tag that matches the given criteria and appears before this Tag in the document.""" return self._findOne(self.findPreviousSiblings, name, attrs, text, **kw...
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Returns the closest sibling to this Tag that matches the given criteria and appears before this Tag in the document.
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python
valid
DataONEorg/d1_python
client_cli/src/d1_cli/impl/command_parser.py
https://github.com/DataONEorg/d1_python/blob/3ac4d4f3ca052d3e8641a6a329cab526c8ddcb0d/client_cli/src/d1_cli/impl/command_parser.py#L419-L428
def do_archive(self, line): """archive <identifier> [identifier ...] Mark one or more existing Science Objects as archived.""" pids = self._split_args(line, 1, -1) self._command_processor.science_object_archive(pids) self._print_info_if_verbose( "Added archive operati...
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archive <identifier> [identifier ...] Mark one or more existing Science Objects as archived.
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python
train
GNS3/gns3-server
gns3server/compute/base_node.py
https://github.com/GNS3/gns3-server/blob/a221678448fb5d24e977ef562f81d56aacc89ab1/gns3server/compute/base_node.py#L643-L689
def _add_ubridge_ethernet_connection(self, bridge_name, ethernet_interface, block_host_traffic=False): """ Creates a connection with an Ethernet interface in uBridge. :param bridge_name: bridge name in uBridge :param ethernet_interface: Ethernet interface name :param block_host_...
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Creates a connection with an Ethernet interface in uBridge. :param bridge_name: bridge name in uBridge :param ethernet_interface: Ethernet interface name :param block_host_traffic: block network traffic originating from the host OS (Windows only)
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python
train
jssimporter/python-jss
jss/contrib/mount_shares_better.py
https://github.com/jssimporter/python-jss/blob/b95185d74e0c0531b0b563f280d4129e21d5fe5d/jss/contrib/mount_shares_better.py#L67-L94
def mount_share_at_path(share_path, mount_path): """Mounts a share at the specified path Args: share_path: String URL with all auth info to connect to file share. mount_path: Path to mount share on. Returns: The mount point or raises an error """ sh_url = CFURLCreateWithStr...
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Mounts a share at the specified path Args: share_path: String URL with all auth info to connect to file share. mount_path: Path to mount share on. Returns: The mount point or raises an error
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python
train
linuxsoftware/ls.joyous
ls/joyous/models/events.py
https://github.com/linuxsoftware/ls.joyous/blob/316283140ca5171a68ad3170a5964fdc89be0b56/ls/joyous/models/events.py#L972-L979
def prev_date(self): """ Date when this event last occurred in the local time zone (Does not include postponements, but does exclude cancellations) """ prevDt = self.__localBefore(timezone.localtime(), dt.time.min) if prevDt is not None: return prevDt.date()
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Date when this event last occurred in the local time zone (Does not include postponements, but does exclude cancellations)
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python
train
e-dard/postcodes
postcodes.py
https://github.com/e-dard/postcodes/blob/d63c47b4ecd765bc2e4e6ba34bc0b8a796f44005/postcodes.py#L22-L34
def get(postcode): """ Request data associated with `postcode`. :param postcode: the postcode to search for. The postcode may contain spaces (they will be removed). :returns: a dict of the nearest postcode's data or None if no postcode data is found. """ po...
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Request data associated with `postcode`. :param postcode: the postcode to search for. The postcode may contain spaces (they will be removed). :returns: a dict of the nearest postcode's data or None if no postcode data is found.
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python
train
note35/sinon
sinon/lib/stub.py
https://github.com/note35/sinon/blob/f1d551b679b393d64d926a8a279320904c38d0f5/sinon/lib/stub.py#L187-L204
def withArgs(self, *args, **kwargs): #pylint: disable=invalid-name """ Adds a condition for when the stub is called. When the condition is met, a special return value can be returned. Adds the specified argument(s) into the condition list. For example, when the stub function is called w...
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Adds a condition for when the stub is called. When the condition is met, a special return value can be returned. Adds the specified argument(s) into the condition list. For example, when the stub function is called with argument 1, it will return "#": stub.withArgs(1).returns("#") ...
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python
train
Unidata/MetPy
metpy/interpolate/grid.py
https://github.com/Unidata/MetPy/blob/16f68a94919b9a82dcf9cada2169cf039129e67b/metpy/interpolate/grid.py#L258-L335
def interpolate_to_grid(x, y, z, interp_type='linear', hres=50000, minimum_neighbors=3, gamma=0.25, kappa_star=5.052, search_radius=None, rbf_func='linear', rbf_smooth=0, boundary_coords=None): r"""Interpolate given (x,y), observation (z) pairs...
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r"""Interpolate given (x,y), observation (z) pairs to a grid based on given parameters. Parameters ---------- x: array_like x coordinate y: array_like y coordinate z: array_like observation value interp_type: str What type of interpolation to use. Available optio...
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python
train
subdownloader/subdownloader
subdownloader/video2.py
https://github.com/subdownloader/subdownloader/blob/bbccedd11b18d925ad4c062b5eb65981e24d0433/subdownloader/video2.py#L131-L138
def get_osdb_hash(self): """ Get the hash of this local videofile :return: hash as string """ if self._osdb_hash is None: self._osdb_hash = self._calculate_osdb_hash() return self._osdb_hash
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Get the hash of this local videofile :return: hash as string
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python
train
lltk/lltk
lltk/nl/scrapers/uitmuntend.py
https://github.com/lltk/lltk/blob/d171de55c1b97695fddedf4b02401ae27bf1d634/lltk/nl/scrapers/uitmuntend.py#L60-L79
def articles(self): ''' Tries to scrape the correct articles for singular and plural from uitmuntend.nl. ''' result = [None, None] element = self._first('NN') if element: element = element.split('\r\n')[0] if ' | ' in element: # This means there is a plural singular, plural = element.split(' | ')...
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Tries to scrape the correct articles for singular and plural from uitmuntend.nl.
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python
train
dagster-io/dagster
python_modules/dagster/dagster/core/types/field_utils.py
https://github.com/dagster-io/dagster/blob/4119f8c773089de64831b1dfb9e168e353d401dc/python_modules/dagster/dagster/core/types/field_utils.py#L284-L308
def PermissiveDict(fields=None): '''A permissive dict will permit the user to partially specify the permitted fields. Any fields that are specified and passed in will be type checked. Other fields will be allowed, but will be ignored by the type checker. ''' if fields: check_user_facing_fie...
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A permissive dict will permit the user to partially specify the permitted fields. Any fields that are specified and passed in will be type checked. Other fields will be allowed, but will be ignored by the type checker.
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python
test
4degrees/riffle
source/riffle/model.py
https://github.com/4degrees/riffle/blob/e5a0d908df8c93ff1ee7abdda8875fd1667df53d/source/riffle/model.py#L191-L216
def _fetchChildren(self): '''Fetch and return new child items.''' children = [] # List paths under this directory. paths = [] for name in os.listdir(self.path): paths.append(os.path.normpath(os.path.join(self.path, name))) # Handle collections. colle...
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Fetch and return new child items.
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python
test
night-crawler/django-docker-helpers
django_docker_helpers/utils.py
https://github.com/night-crawler/django-docker-helpers/blob/b64f8009101a8eb61d3841124ba19e3ab881aa2f/django_docker_helpers/utils.py#L97-L140
def dot_path(obj: t.Union[t.Dict, object], path: str, default: t.Any = None, separator: str = '.'): """ Provides an access to elements of a mixed dict/object type by a delimiter-separated path. :: class O1: my_dict = {'a': {'b': 1}} class ...
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Provides an access to elements of a mixed dict/object type by a delimiter-separated path. :: class O1: my_dict = {'a': {'b': 1}} class O2: def __init__(self): self.nested = O1() class O3: final = O2() o = O3() assert uti...
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python
train
CameronLonsdale/lantern
lantern/modules/shift.py
https://github.com/CameronLonsdale/lantern/blob/235e163e96bf0719d49c54204ee576b2ca93abb6/lantern/modules/shift.py#L48-L80
def crack(ciphertext, *fitness_functions, min_key=0, max_key=26, shift_function=shift_case_english): """Break ``ciphertext`` by enumerating keys between ``min_key`` and ``max_key``. Example: >>> decryptions = crack("KHOOR", fitness.english.quadgrams) >>> print(''.join(decryptions[0].plaintext))...
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Break ``ciphertext`` by enumerating keys between ``min_key`` and ``max_key``. Example: >>> decryptions = crack("KHOOR", fitness.english.quadgrams) >>> print(''.join(decryptions[0].plaintext)) HELLO Args: ciphertext (iterable): The symbols to decrypt *fitness_functions (...
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python
train
msoulier/tftpy
tftpy/TftpStates.py
https://github.com/msoulier/tftpy/blob/af2f2fe89a3bf45748b78703820efb0986a8207a/tftpy/TftpStates.py#L39-L53
def handleOACK(self, pkt): """This method handles an OACK from the server, syncing any accepted options.""" if len(pkt.options.keys()) > 0: if pkt.match_options(self.context.options): log.info("Successful negotiation of options") # Set options to OACK ...
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This method handles an OACK from the server, syncing any accepted options.
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python
train
wbond/asn1crypto
asn1crypto/core.py
https://github.com/wbond/asn1crypto/blob/ecda20176f55d37021cbca1f6da9083a8e491197/asn1crypto/core.py#L2857-L2905
def set(self, value): """ Sets the value of the object :param value: A unicode string. May be a dotted integer string, or if _map is provided, one of the mapped values. :raises: ValueError - when an invalid value is passed """ if not...
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Sets the value of the object :param value: A unicode string. May be a dotted integer string, or if _map is provided, one of the mapped values. :raises: ValueError - when an invalid value is passed
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python
train
brocade/pynos
pynos/versions/ver_6/ver_6_0_1/yang/brocade_ras_ext.py
https://github.com/brocade/pynos/blob/bd8a34e98f322de3fc06750827d8bbc3a0c00380/pynos/versions/ver_6/ver_6_0_1/yang/brocade_ras_ext.py#L96-L109
def show_raslog_output_show_all_raslog_raslog_entries_date_and_time_info(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") show_raslog = ET.Element("show_raslog") config = show_raslog output = ET.SubElement(show_raslog, "output") show_all_r...
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Auto Generated Code
[ "Auto", "Generated", "Code" ]
python
train
ANTsX/ANTsPy
ants/core/ants_transform_io.py
https://github.com/ANTsX/ANTsPy/blob/638020af2cdfc5ff4bdb9809ffe67aa505727a3b/ants/core/ants_transform_io.py#L16-L35
def new_ants_transform(precision='float', dimension=3, transform_type='AffineTransform', parameters=None): """ Create a new ANTsTransform ANTsR function: None Example ------- >>> import ants >>> tx = ants.new_ants_transform() """ libfn = utils.get_lib_fn('newAntsTransform%s%i' % (u...
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Create a new ANTsTransform ANTsR function: None Example ------- >>> import ants >>> tx = ants.new_ants_transform()
[ "Create", "a", "new", "ANTsTransform" ]
python
train
sorgerlab/indra
indra/sources/bel/rdf_processor.py
https://github.com/sorgerlab/indra/blob/79a70415832c5702d7a820c7c9ccc8e25010124b/indra/sources/bel/rdf_processor.py#L526-L652
def get_transcription(self): """Extract Increase/DecreaseAmount INDRA Statements from BEL. Three distinct SPARQL patterns are used to extract amount regulations from BEL. - q_tscript1 searches for a subject which is a Transcription ActivityType of a ProteinAbundance and an ob...
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Extract Increase/DecreaseAmount INDRA Statements from BEL. Three distinct SPARQL patterns are used to extract amount regulations from BEL. - q_tscript1 searches for a subject which is a Transcription ActivityType of a ProteinAbundance and an object which is an RNAAbundance ...
[ "Extract", "Increase", "/", "DecreaseAmount", "INDRA", "Statements", "from", "BEL", "." ]
python
train
deep-compute/logagg
logagg/collector.py
https://github.com/deep-compute/logagg/blob/7863bc1b5ddf3e67c4d4b55746799304180589a0/logagg/collector.py#L184-L221
def assign_default_log_values(self, fpath, line, formatter): ''' >>> lc = LogCollector('file=/path/to/log_file.log:formatter=logagg.formatters.basescript', 30) >>> from pprint import pprint >>> formatter = 'logagg.formatters.mongodb' >>> fpath = '/var/log/mongodb/mongodb.log' ...
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>>> lc = LogCollector('file=/path/to/log_file.log:formatter=logagg.formatters.basescript', 30) >>> from pprint import pprint >>> formatter = 'logagg.formatters.mongodb' >>> fpath = '/var/log/mongodb/mongodb.log' >>> line = 'some log line here' >>> default_log = lc.assign_defaul...
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python
train
Akay7/nosql2django
nosql2django/parser_mapper.py
https://github.com/Akay7/nosql2django/blob/f33af832d4d0d652bd730471d1ce6a717700d1e7/nosql2django/parser_mapper.py#L27-L53
def save_to_db(model_text_id, parsed_values): """save to db and return saved object""" Model = apps.get_model(model_text_id) # normalise values and separate to m2m, simple simple_fields = {} many2many_fields = {} for field, value in parsed_values.items(): if ...
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save to db and return saved object
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python
train
RaRe-Technologies/gensim-simserver
simserver/simserver.py
https://github.com/RaRe-Technologies/gensim-simserver/blob/e7e59e836ef6d9da019a8c6b218ef0bdd998b2da/simserver/simserver.py#L556-L583
def train(self, corpus=None, method='auto', clear_buffer=True, params=None): """ Create an indexing model. Will overwrite the model if it already exists. All indexes become invalid, because documents in them use a now-obsolete representation. The model is trained on documents pr...
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Create an indexing model. Will overwrite the model if it already exists. All indexes become invalid, because documents in them use a now-obsolete representation. The model is trained on documents previously entered via `buffer`, or directly on `corpus`, if specified.
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python
train
facetoe/zenpy
zenpy/lib/api.py
https://github.com/facetoe/zenpy/blob/34c54c7e408b9ed01604ddf8b3422204c8bf31ea/zenpy/lib/api.py#L834-L838
def skips(self, user): """ Skips for user. Zendesk API `Reference <https://developer.zendesk.com/rest_api/docs/core/ticket_skips>`__. """ return self._get(self._build_url(self.endpoint.skips(id=user)))
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Skips for user. Zendesk API `Reference <https://developer.zendesk.com/rest_api/docs/core/ticket_skips>`__.
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python
train
raiden-network/raiden
raiden/network/proxies/payment_channel.py
https://github.com/raiden-network/raiden/blob/407ba15c72074e9de88771d6b9661ff4dc36bef5/raiden/network/proxies/payment_channel.py#L178-L195
def close( self, nonce: Nonce, balance_hash: BalanceHash, additional_hash: AdditionalHash, signature: Signature, block_identifier: BlockSpecification, ): """ Closes the channel using the provided balance proof. """ self.token_ne...
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Closes the channel using the provided balance proof.
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python
train
marshallward/f90nml
f90nml/parser.py
https://github.com/marshallward/f90nml/blob/4932cabc5221afc844ee6a5b4a05ceb8bd4a2711/f90nml/parser.py#L639-L647
def _parse_indices(self): """Parse a sequence of Fortran vector indices as a list of tuples.""" v_name = self.prior_token v_indices = [] while self.token in (',', '('): v_indices.append(self._parse_index(v_name)) return v_indices
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Parse a sequence of Fortran vector indices as a list of tuples.
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python
train
craigahobbs/chisel
src/chisel/app.py
https://github.com/craigahobbs/chisel/blob/d306a9eae2ff757647c6ca1c933bc944efa5c326/src/chisel/app.py#L224-L241
def response_json(self, status, response, content_type='application/json', encoding='utf-8', headers=None, jsonp=None): """ Send a JSON response """ encoder = JSONEncoder( check_circular=self.app.validate_output, allow_nan=False, sort_keys=True, ...
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Send a JSON response
[ "Send", "a", "JSON", "response" ]
python
train
crate/crash
src/crate/crash/tabulate.py
https://github.com/crate/crash/blob/32d3ddc78fd2f7848ed2b99d9cd8889e322528d9/src/crate/crash/tabulate.py#L468-L478
def _visible_width(s): """Visible width of a printed string. ANSI color codes are removed. >>> _visible_width('\x1b[31mhello\x1b[0m'), _visible_width("world") (5, 5) """ if isinstance(s, _text_type) or isinstance(s, _binary_type): return _max_line_width(_strip_invisible(s)) else: ...
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Visible width of a printed string. ANSI color codes are removed. >>> _visible_width('\x1b[31mhello\x1b[0m'), _visible_width("world") (5, 5)
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python
train
moonso/loqusdb
loqusdb/utils/vcf.py
https://github.com/moonso/loqusdb/blob/792dcd0d461aff5adc703c49eebf58964913a513/loqusdb/utils/vcf.py#L89-L180
def check_vcf(vcf_path, expected_type='snv'): """Check if there are any problems with the vcf file Args: vcf_path(str) expected_type(str): 'sv' or 'snv' Returns: vcf_info(dict): dict like { 'nr_variants':<INT>, 'variant_type': <STR> in ['snv', 'sv'],...
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Check if there are any problems with the vcf file Args: vcf_path(str) expected_type(str): 'sv' or 'snv' Returns: vcf_info(dict): dict like { 'nr_variants':<INT>, 'variant_type': <STR> in ['snv', 'sv'], 'individuals': <LIST> individual positio...
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python
train
log2timeline/plaso
plaso/engine/zeromq_queue.py
https://github.com/log2timeline/plaso/blob/9c564698d2da3ffbe23607a3c54c0582ea18a6cc/plaso/engine/zeromq_queue.py#L181-L219
def _CreateZMQSocket(self): """Creates a ZeroMQ socket.""" logger.debug('Creating socket for {0:s}'.format(self.name)) if not self._zmq_context: self._zmq_context = zmq.Context() # The terminate and close threading events need to be created when the # socket is opened. Threading events are u...
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Creates a ZeroMQ socket.
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python
train
secdev/scapy
scapy/layers/tls/cert.py
https://github.com/secdev/scapy/blob/3ffe757c184017dd46464593a8f80f85abc1e79a/scapy/layers/tls/cert.py#L959-L984
def verifyChainFromCAPath(self, capath, untrusted_file=None): """ Does the same job as .verifyChainFromCAFile() but using the list of anchors in capath directory. The directory should (only) contain certificates files in PEM format. As for .verifyChainFromCAFile(), a list of untr...
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Does the same job as .verifyChainFromCAFile() but using the list of anchors in capath directory. The directory should (only) contain certificates files in PEM format. As for .verifyChainFromCAFile(), a list of untrusted certificates can be passed as a file (concatenation of the certifica...
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python
train
alexhayes/django-toolkit
django_toolkit/date_util.py
https://github.com/alexhayes/django-toolkit/blob/b64106392fad596defc915b8235fe6e1d0013b5b/django_toolkit/date_util.py#L50-L63
def days(start, stop): """ Return days between start & stop (inclusive) Note that start must be less than stop or else 0 is returned. @param start: Start date @param stop: Stop date @return int """ dates=rrule.rruleset() # Get dates between start/stop (which are inclusive) ...
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Return days between start & stop (inclusive) Note that start must be less than stop or else 0 is returned. @param start: Start date @param stop: Stop date @return int
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python
train
datajoint/datajoint-python
datajoint/external.py
https://github.com/datajoint/datajoint-python/blob/4f29bb154a7ed2b8b64b4d3a9c8be4c16b39621c/datajoint/external.py#L121-L129
def references(self): """ :return: generator of referencing table names and their referencing columns """ return self.connection.query(""" SELECT concat('`', table_schema, '`.`', table_name, '`') as referencing_table, column_name FROM information_schema.key_column_usage ...
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:return: generator of referencing table names and their referencing columns
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python
train
Parsl/parsl
parsl/dataflow/dflow.py
https://github.com/Parsl/parsl/blob/d7afb3bc37f50dcf224ae78637944172edb35dac/parsl/dataflow/dflow.py#L1033-L1050
def load(cls, config: Optional[Config] = None): """Load a DataFlowKernel. Args: - config (Config) : Configuration to load. This config will be passed to a new DataFlowKernel instantiation which will be set as the active DataFlowKernel. Returns: - DataFlowKe...
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Load a DataFlowKernel. Args: - config (Config) : Configuration to load. This config will be passed to a new DataFlowKernel instantiation which will be set as the active DataFlowKernel. Returns: - DataFlowKernel : The loaded DataFlowKernel object.
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python
valid
Groundworkstech/pybfd
pybfd/bfd.py
https://github.com/Groundworkstech/pybfd/blob/9e722435929b4ad52212043a6f1e9e9ce60b5d72/pybfd/bfd.py#L516-L521
def file_flags(self, _file_flags): """Set the new file flags attribute of the BFD file being processed.""" if not self._ptr: raise BfdException("BFD not initialized") return _bfd.set_file_flags(self._ptr, _file_flags)
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Set the new file flags attribute of the BFD file being processed.
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python
train
IdentityPython/pysaml2
src/saml2/attribute_converter.py
https://github.com/IdentityPython/pysaml2/blob/d3aa78eeb7d37c12688f783cb4db1c7263a14ad6/src/saml2/attribute_converter.py#L104-L148
def list_to_local(acs, attrlist, allow_unknown_attributes=False): """ Replaces the attribute names in a attribute value assertion with the equivalent name from a local name format. :param acs: List of Attribute Converters :param attrlist: List of Attributes :param allow_unknown_attributes: If unkno...
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Replaces the attribute names in a attribute value assertion with the equivalent name from a local name format. :param acs: List of Attribute Converters :param attrlist: List of Attributes :param allow_unknown_attributes: If unknown attributes are allowed :return: A key,values dictionary
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python
train
saltstack/salt
salt/cloud/clouds/xen.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/cloud/clouds/xen.py#L370-L411
def vdi_list(call=None, kwargs=None): ''' Return available Xen VDI images If this function is called with the ``-f`` or ``--function`` then it can return a list with minimal deatil using the ``terse=True`` keyword argument. .. code-block:: bash salt-cloud -f vdi_list myxen terse=True ...
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Return available Xen VDI images If this function is called with the ``-f`` or ``--function`` then it can return a list with minimal deatil using the ``terse=True`` keyword argument. .. code-block:: bash salt-cloud -f vdi_list myxen terse=True
[ "Return", "available", "Xen", "VDI", "images" ]
python
train
tnkteja/myhelp
virtualEnvironment/lib/python2.7/site-packages/coverage/config.py
https://github.com/tnkteja/myhelp/blob/fb3a4809d448ad14d5b2e6ddf2e7e89ad52b71cb/virtualEnvironment/lib/python2.7/site-packages/coverage/config.py#L16-L21
def read(self, filename): """Read a filename as UTF-8 configuration data.""" kwargs = {} if sys.version_info >= (3, 2): kwargs['encoding'] = "utf-8" return configparser.RawConfigParser.read(self, filename, **kwargs)
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Read a filename as UTF-8 configuration data.
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python
test
mar10/wsgidav
wsgidav/util.py
https://github.com/mar10/wsgidav/blob/cec0d84222fc24bea01be1cea91729001963f172/wsgidav/util.py#L91-L118
def _parse_gmt_time(timestring): """Return a standard time tuple (see time and calendar), for a date/time string.""" # Sun, 06 Nov 1994 08:49:37 GMT ; RFC 822, updated by RFC 1123 try: return time.strptime(timestring, "%a, %d %b %Y %H:%M:%S GMT") except Exception: pass # Sunday, 06...
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Return a standard time tuple (see time and calendar), for a date/time string.
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python
valid
MisterY/pydatum
pydatum/datum.py
https://github.com/MisterY/pydatum/blob/4b39f43040e31a95bcf219603b6429078a9ba3c2/pydatum/datum.py#L172-L175
def subtract_months(self, months: int) -> datetime: """ Subtracts a number of months from the current value """ self.value = self.value - relativedelta(months=months) return self.value
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Subtracts a number of months from the current value
[ "Subtracts", "a", "number", "of", "months", "from", "the", "current", "value" ]
python
train
CityOfZion/neo-python
neo/Implementations/Notifications/LevelDB/NotificationDB.py
https://github.com/CityOfZion/neo-python/blob/fe90f62e123d720d4281c79af0598d9df9e776fb/neo/Implementations/Notifications/LevelDB/NotificationDB.py#L233-L259
def get_by_addr(self, address): """ Lookup a set of notifications by address Args: address (UInt160 or str): hash of address for notifications Returns: list: a list of notifications """ addr = address if isinstance(address, str) and len(ad...
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Lookup a set of notifications by address Args: address (UInt160 or str): hash of address for notifications Returns: list: a list of notifications
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python
train
rytilahti/python-songpal
songpal/discovery.py
https://github.com/rytilahti/python-songpal/blob/0443de6b3d960b9067a851d82261ca00e46b4618/songpal/discovery.py#L21-L68
async def discover(timeout, debug=0, callback=None): """Discover supported devices.""" ST = "urn:schemas-sony-com:service:ScalarWebAPI:1" _LOGGER.info("Discovering for %s seconds" % timeout) from async_upnp_client import UpnpFactory from async_upnp_client.aiohttp import AiohttpR...
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Discover supported devices.
[ "Discover", "supported", "devices", "." ]
python
train
noxdafox/clipspy
clips/classes.py
https://github.com/noxdafox/clipspy/blob/b22d71a6da821c1715d8fa00d7d75cabc09ed364/clips/classes.py#L187-L202
def save_instances(self, path, binary=False, mode=SaveMode.LOCAL_SAVE): """Save the instances in the system to the specified file. If binary is True, the instances will be saved in binary format. The Python equivalent of the CLIPS save-instances command. """ if binary: ...
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Save the instances in the system to the specified file. If binary is True, the instances will be saved in binary format. The Python equivalent of the CLIPS save-instances command.
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python
train
PythonCharmers/python-future
src/future/backports/http/client.py
https://github.com/PythonCharmers/python-future/blob/c423752879acc05eebc29b0bb9909327bd5c7308/src/future/backports/http/client.py#L771-L782
def set_tunnel(self, host, port=None, headers=None): """ Sets up the host and the port for the HTTP CONNECT Tunnelling. The headers argument should be a mapping of extra HTTP headers to send with the CONNECT request. """ self._tunnel_host = host self._tunnel_port = port ...
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Sets up the host and the port for the HTTP CONNECT Tunnelling. The headers argument should be a mapping of extra HTTP headers to send with the CONNECT request.
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python
train
google/grr
grr/core/grr_response_core/lib/parsers/wmi_parser.py
https://github.com/google/grr/blob/5cef4e8e2f0d5df43ea4877e9c798e0bf60bfe74/grr/core/grr_response_core/lib/parsers/wmi_parser.py#L99-L138
def ParseMultiple(self, result_dicts): """Parse WMI Event Consumers.""" for result_dict in result_dicts: wmi_dict = result_dict.ToDict() try: creator_sid_bytes = bytes(wmi_dict["CreatorSID"]) wmi_dict["CreatorSID"] = BinarySIDtoStringSID(creator_sid_bytes) except ValueError: ...
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Parse WMI Event Consumers.
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python
train
mitsei/dlkit
dlkit/json_/assessment/sessions.py
https://github.com/mitsei/dlkit/blob/445f968a175d61c8d92c0f617a3c17dc1dc7c584/dlkit/json_/assessment/sessions.py#L9138-L9155
def has_child_banks(self, bank_id): """Tests if a bank has any children. arg: bank_id (osid.id.Id): a ``bank_id`` return: (boolean) - ``true`` if the ``bank_id`` has children, ``false`` otherwise raise: NotFound - ``bank_id`` is not found raise: NullArgument...
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Tests if a bank has any children. arg: bank_id (osid.id.Id): a ``bank_id`` return: (boolean) - ``true`` if the ``bank_id`` has children, ``false`` otherwise raise: NotFound - ``bank_id`` is not found raise: NullArgument - ``bank_id`` is ``null`` raise: Oper...
[ "Tests", "if", "a", "bank", "has", "any", "children", "." ]
python
train
guaix-ucm/numina
numina/array/wavecalib/crosscorrelation.py
https://github.com/guaix-ucm/numina/blob/6c829495df8937f77c2de9383c1038ffb3e713e3/numina/array/wavecalib/crosscorrelation.py#L150-L370
def periodic_corr1d(sp_reference, sp_offset, fminmax=None, naround_zero=None, norm_spectra=False, plottitle=None, pdf=None, debugplot=0): """Periodic correlation between two spectra, implemented u...
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Periodic correlation between two spectra, implemented using FFT. Parameters ---------- sp_reference : numpy array Reference spectrum. sp_offset : numpy array Spectrum which offset is going to be measured relative to the reference spectrum. fminmax : tuple of floats or None ...
[ "Periodic", "correlation", "between", "two", "spectra", "implemented", "using", "FFT", "." ]
python
train
shoebot/shoebot
lib/graph/__init__.py
https://github.com/shoebot/shoebot/blob/d554c1765c1899fa25727c9fc6805d221585562b/lib/graph/__init__.py#L381-L411
def update(self, iterations=10): """ Iterates the graph layout and updates node positions. """ # The graph fades in when initially constructed. self.alpha += 0.05 self.alpha = min(self.alpha, 1.0) # Iterates over the graph's layout. # Each s...
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Iterates the graph layout and updates node positions.
[ "Iterates", "the", "graph", "layout", "and", "updates", "node", "positions", "." ]
python
valid
SiLab-Bonn/pyBAR
pybar/fei4/register_utils.py
https://github.com/SiLab-Bonn/pyBAR/blob/5ad95bbcd41cd358825823fb78f396cfce23593e/pybar/fei4/register_utils.py#L913-L1252
def scan_loop(self, command, repeat_command=100, use_delay=True, additional_delay=0, mask_steps=3, enable_mask_steps=None, enable_double_columns=None, same_mask_for_all_dc=False, fast_dc_loop=True, bol_function=None, eol_function=None, digital_injection=False, enable_shift_masks=None, disable_shift_masks=None, restore_...
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Implementation of the scan loops (mask shifting, loop over double columns, repeatedly sending any arbitrary command). Parameters ---------- command : BitVector (FEI4) command that will be sent out serially. repeat_command : int The number of repetitions command will be sent out e...
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python
train
LionelAuroux/pyrser
pyrser/parsing/base.py
https://github.com/LionelAuroux/pyrser/blob/f153a97ef2b6bf915a1ed468c0252a9a59b754d5/pyrser/parsing/base.py#L543-L556
def read_cstring(self) -> bool: """ read a double quoted string Read following BNF rule else return False:: '"' -> ['\\' #char | ~'\\'] '"' """ self._stream.save_context() idx = self._stream.index if self.read_char("\"") and self.read_until("\"", "\\"): txt = self._stream[i...
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read a double quoted string Read following BNF rule else return False:: '"' -> ['\\' #char | ~'\\'] '"'
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python
test
kyuupichan/aiorpcX
aiorpcx/jsonrpc.py
https://github.com/kyuupichan/aiorpcX/blob/707c989ed1c67ac9a40cd20b0161b1ce1f4d7db0/aiorpcx/jsonrpc.py#L247-L280
def message_to_item(cls, message): '''Translate an unframed received message and return an (item, request_id) pair. The item can be a Request, Notification, Response or a list. A JSON RPC error response is returned as an RPCError inside a Response object. If a Batch is...
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Translate an unframed received message and return an (item, request_id) pair. The item can be a Request, Notification, Response or a list. A JSON RPC error response is returned as an RPCError inside a Response object. If a Batch is returned, request_id is an iterable of reques...
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python
train
gem/oq-engine
openquake/baselib/node.py
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/baselib/node.py#L160-L172
def floatformat(fmt_string): """ Context manager to change the default format string for the function :func:`openquake.commonlib.writers.scientificformat`. :param fmt_string: the format to use; for instance '%13.9E' """ fmt_defaults = scientificformat.__defaults__ scientificformat.__default...
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Context manager to change the default format string for the function :func:`openquake.commonlib.writers.scientificformat`. :param fmt_string: the format to use; for instance '%13.9E'
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python
train
tensorflow/tensor2tensor
tensor2tensor/bin/t2t_distill.py
https://github.com/tensorflow/tensor2tensor/blob/272500b6efe353aeb638d2745ed56e519462ca31/tensor2tensor/bin/t2t_distill.py#L91-L114
def create_teacher_experiment(run_config, hparams, argv): """Creates experiment function.""" tf.logging.info("training teacher") tf.logging.set_verbosity(tf.logging.INFO) trainer_lib.set_random_seed(FLAGS.random_seed) usr_dir.import_usr_dir(FLAGS.t2t_usr_dir) t2t_trainer.maybe_log_registry_and_exit() if ...
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Creates experiment function.
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python
train
numenta/nupic
src/nupic/algorithms/backtracking_tm.py
https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/algorithms/backtracking_tm.py#L1479-L1523
def _computeOutput(self): """ Computes output for both learning and inference. In both cases, the output is the boolean OR of ``activeState`` and ``predictedState`` at ``t``. Stores ``currentOutput`` for ``checkPrediction``. :returns: TODO: document """ # TODO: This operation can be spe...
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Computes output for both learning and inference. In both cases, the output is the boolean OR of ``activeState`` and ``predictedState`` at ``t``. Stores ``currentOutput`` for ``checkPrediction``. :returns: TODO: document
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python
valid
limix/glimix-core
glimix_core/lmm/_lmm_scan.py
https://github.com/limix/glimix-core/blob/cddd0994591d100499cc41c1f480ddd575e7a980/glimix_core/lmm/_lmm_scan.py#L267-L315
def scan(self, M): """ LML, fixed-effect sizes, and scale of the candidate set. Parameters ---------- M : array_like Fixed-effects set. Returns ------- lml : float Log of the marginal likelihood. effsizes0 : ndarray ...
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LML, fixed-effect sizes, and scale of the candidate set. Parameters ---------- M : array_like Fixed-effects set. Returns ------- lml : float Log of the marginal likelihood. effsizes0 : ndarray Covariates fixed-effect sizes. ...
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python
valid
GNS3/gns3-server
gns3server/compute/notification_manager.py
https://github.com/GNS3/gns3-server/blob/a221678448fb5d24e977ef562f81d56aacc89ab1/gns3server/compute/notification_manager.py#L60-L68
def instance(): """ Singleton to return only on instance of NotificationManager. :returns: instance of NotificationManager """ if not hasattr(NotificationManager, '_instance') or NotificationManager._instance is None: NotificationManager._instance = NotificationManag...
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Singleton to return only on instance of NotificationManager. :returns: instance of NotificationManager
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python
train
RiotGames/cloud-inquisitor
plugins/public/cinq-auditor-cloudtrail/cinq_auditor_cloudtrail/__init__.py
https://github.com/RiotGames/cloud-inquisitor/blob/181dc2566ca59fc855f695b7fcc2c3b934e6ee9f/plugins/public/cinq-auditor-cloudtrail/cinq_auditor_cloudtrail/__init__.py#L338-L361
def subscribe_sns_topic_to_sqs(self, region): """Subscribe SQS to the SNS topic. Returns the ARN of the SNS Topic subscribed Args: region (`str`): Name of the AWS region Returns: `str` """ sns = self.session.resource('sns', region_name=region) to...
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Subscribe SQS to the SNS topic. Returns the ARN of the SNS Topic subscribed Args: region (`str`): Name of the AWS region Returns: `str`
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python
train
bachya/pyairvisual
pyairvisual/api.py
https://github.com/bachya/pyairvisual/blob/1d4809998d87f85d53bb281e1eb54d43acee06fa/pyairvisual/api.py#L28-L38
async def city(self, city: str, state: str, country: str) -> dict: """Return data for the specified city.""" data = await self._request( 'get', 'city', params={ 'city': city, 'state': state, 'country': country ...
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Return data for the specified city.
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python
train
googleapis/google-cloud-python
logging/google/cloud/logging/_http.py
https://github.com/googleapis/google-cloud-python/blob/85e80125a59cb10f8cb105f25ecc099e4b940b50/logging/google/cloud/logging/_http.py#L163-L176
def logger_delete(self, project, logger_name): """API call: delete all entries in a logger via a DELETE request See https://cloud.google.com/logging/docs/reference/v2/rest/v2/projects.logs/delete :type project: str :param project: ID of project containing the log entries to de...
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API call: delete all entries in a logger via a DELETE request See https://cloud.google.com/logging/docs/reference/v2/rest/v2/projects.logs/delete :type project: str :param project: ID of project containing the log entries to delete :type logger_name: str :param logger...
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python
train
Chilipp/sphinx-nbexamples
sphinx_nbexamples/__init__.py
https://github.com/Chilipp/sphinx-nbexamples/blob/08e0319ff3c70f8a931dfa8890caf48add4d0470/sphinx_nbexamples/__init__.py#L509-L548
def get_description(self): """Get summary and description of this notebook""" def split_header(s, get_header=True): s = s.lstrip().rstrip() parts = s.splitlines() if parts[0].startswith('#'): if get_header: header = re.sub('#+\s*', ...
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Get summary and description of this notebook
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python
test
christian-oudard/htmltreediff
htmltreediff/diff_core.py
https://github.com/christian-oudard/htmltreediff/blob/0e28f56492ae7e69bb0f74f9a79a8909a5ad588d/htmltreediff/diff_core.py#L268-L285
def merge_blocks(a_blocks, b_blocks): """Given two lists of blocks, combine them, in the proper order. Ensure that there are no overlaps, and that they are for sequences of the same length. """ # Check sentinels for sequence length. assert a_blocks[-1][2] == b_blocks[-1][2] == 0 # sentinel size...
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Given two lists of blocks, combine them, in the proper order. Ensure that there are no overlaps, and that they are for sequences of the same length.
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python
train
cyrus-/cypy
cypy/np/__init__.py
https://github.com/cyrus-/cypy/blob/04bb59e91fa314e8cf987743189c77a9b6bc371d/cypy/np/__init__.py#L60-L78
def packed(self): """ each row is placed side-by-side with the length of the row interlaced the head of the packed matrix contains offsets to this length e.g. [[11, 22, 33], [44, 55], []] => [3, 7, 10, 3, 11, 22, 33, 2, 44, 55, 0] """ # not the most efficient implementati...
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each row is placed side-by-side with the length of the row interlaced the head of the packed matrix contains offsets to this length e.g. [[11, 22, 33], [44, 55], []] => [3, 7, 10, 3, 11, 22, 33, 2, 44, 55, 0]
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python
train
log2timeline/dfvfs
dfvfs/lib/gzipfile.py
https://github.com/log2timeline/dfvfs/blob/2b3ccd115f9901d89f383397d4a1376a873c83c4/dfvfs/lib/gzipfile.py#L288-L333
def ReadAtOffset(self, offset, size=None): """Reads a byte string from the gzip member at the specified offset. The function will read a byte string of the specified size or all of the remaining data if no size was specified. Args: offset (int): offset within the uncompressed data in this member...
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Reads a byte string from the gzip member at the specified offset. The function will read a byte string of the specified size or all of the remaining data if no size was specified. Args: offset (int): offset within the uncompressed data in this member to read from. size (Optional[int]):...
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python
train
saltstack/salt
salt/runners/vault.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/runners/vault.py#L262-L269
def _get_token_create_url(config): ''' Create Vault url for token creation ''' role_name = config.get('role_name', None) auth_path = '/v1/auth/token/create' base_url = config['url'] return '/'.join(x.strip('/') for x in (base_url, auth_path, role_name) if x)
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Create Vault url for token creation
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python
train
JdeRobot/base
src/drivers/MAVLinkServer/MAVProxy/pymavlink/dialects/v10/matrixpilot.py
https://github.com/JdeRobot/base/blob/303b18992785b2fe802212f2d758a60873007f1f/src/drivers/MAVLinkServer/MAVProxy/pymavlink/dialects/v10/matrixpilot.py#L11661-L11672
def log_request_data_encode(self, target_system, target_component, id, ofs, count): ''' Request a chunk of a log target_system : System ID (uint8_t) target_component : Component ID (uint8_t) id :...
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Request a chunk of a log target_system : System ID (uint8_t) target_component : Component ID (uint8_t) id : Log id (from LOG_ENTRY reply) (uint16_t) ofs : Offset into the log (uint32_t) ...
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python
train
RRZE-HPC/kerncraft
kerncraft/kernel.py
https://github.com/RRZE-HPC/kerncraft/blob/c60baf8043e4da8d8d66da7575021c2f4c6c78af/kerncraft/kernel.py#L1075-L1103
def _build_const_declartions(self, with_init=True): """ Generate constants declarations :return: list of declarations """ decls = [] # Use type as provided by user in loop indices index_type = self.get_index_type() i = 2 # subscript for cli input, 1 is...
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Generate constants declarations :return: list of declarations
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python
test
chrisspen/burlap
burlap/supervisor.py
https://github.com/chrisspen/burlap/blob/a92b0a8e5206850bb777c74af8421ea8b33779bd/burlap/supervisor.py#L237-L297
def deploy_services(self, site=None): """ Collects the configurations for all registered services and writes the appropriate supervisord.conf file. """ verbose = self.verbose r = self.local_renderer if not r.env.manage_configs: return # # tar...
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Collects the configurations for all registered services and writes the appropriate supervisord.conf file.
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python
valid
vektorlab/slacksocket
slacksocket/webclient.py
https://github.com/vektorlab/slacksocket/blob/8eb8b0f14fe80740217ea0aaf6feb7f736bdf57f/slacksocket/webclient.py#L155-L163
def match(self, attr, val): """ lookup object in directory with attribute matching value """ self._lock.acquire() try: for x in self: if getattr(x, attr) == val: return x finally: self._lock.release()
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lookup object in directory with attribute matching value
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python
train
pybel/pybel
src/pybel/struct/filters/node_predicates.py
https://github.com/pybel/pybel/blob/c8a7a1bdae4c475fa2a8c77f3a9a5f6d79556ca0/src/pybel/struct/filters/node_predicates.py#L152-L174
def _node_has_modifier(graph: BELGraph, node: BaseEntity, modifier: str) -> bool: """Return true if over any of a nodes edges, it has a given modifier. Modifier can be one of: - :data:`pybel.constants.ACTIVITY`, - :data:`pybel.constants.DEGRADATION` - :data:`pybel.constants.TRANSLOCATION`. ...
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Return true if over any of a nodes edges, it has a given modifier. Modifier can be one of: - :data:`pybel.constants.ACTIVITY`, - :data:`pybel.constants.DEGRADATION` - :data:`pybel.constants.TRANSLOCATION`. :param modifier: One of :data:`pybel.constants.ACTIVITY`, :data:`pybel.constants.DEGRAD...
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python
train
jonbretman/jinja-to-js
jinja_to_js/__init__.py
https://github.com/jonbretman/jinja-to-js/blob/0a784b10a83d37a3171c5797547e9fc460c51289/jinja_to_js/__init__.py#L405-L422
def _process_name(self, node, **kwargs): """ Processes a `Name` node. Some examples of `Name` nodes: {{ foo }} -> 'foo' is a Name {% if foo }} -> 'foo' is a Name """ with self._interpolation(): with self._python_bool_wrapper(**kwargs): ...
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Processes a `Name` node. Some examples of `Name` nodes: {{ foo }} -> 'foo' is a Name {% if foo }} -> 'foo' is a Name
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python
train
7sDream/zhihu-py3
zhihu/question.py
https://github.com/7sDream/zhihu-py3/blob/bcb4aa8325f8b54d3b44bd0bdc959edd9761fcfc/zhihu/question.py#L176-L273
def answers(self): """获取问题的所有答案. :return: 问题的所有答案,返回生成器 :rtype: Answer.Iterable """ from .author import Author from .answer import Answer self._make_soup() # TODO: 统一逻辑. 完全可以都用 _parse_answer_html 的逻辑替换 if self._url.endswith('sort=created'): ...
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获取问题的所有答案. :return: 问题的所有答案,返回生成器 :rtype: Answer.Iterable
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python
train
SystemRDL/systemrdl-compiler
systemrdl/rdltypes.py
https://github.com/SystemRDL/systemrdl-compiler/blob/6ae64f2bb6ecbbe9db356e20e8ac94e85bdeed3a/systemrdl/rdltypes.py#L188-L211
def get_scope_path(cls, scope_separator="::"): """ Generate a string that represents this enum's declaration namespace scope. Parameters ---------- scope_separator: str Override the separator between namespace scopes """ if cls.get_parent_scop...
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Generate a string that represents this enum's declaration namespace scope. Parameters ---------- scope_separator: str Override the separator between namespace scopes
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python
train
juju/charm-helpers
charmhelpers/contrib/peerstorage/__init__.py
https://github.com/juju/charm-helpers/blob/aa785c40c3b7a8c69dbfbc7921d6b9f30142e171/charmhelpers/contrib/peerstorage/__init__.py#L143-L157
def relation_get(attribute=None, unit=None, rid=None): """Attempt to use leader-get if supported in the current version of Juju, otherwise falls back on relation-get. Note that we only attempt to use leader-get if the provided rid is a peer relation id or no relation id is provided (in which case we as...
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Attempt to use leader-get if supported in the current version of Juju, otherwise falls back on relation-get. Note that we only attempt to use leader-get if the provided rid is a peer relation id or no relation id is provided (in which case we assume we are within the peer relation context).
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python
train
nnseva/django-access
access/admin.py
https://github.com/nnseva/django-access/blob/2e8b72830b1092652ca63125a8309189d70ad584/access/admin.py#L279-L286
def delete_view(self, request, object_id, extra_context=None): "The 'delete' admin view for this model." queryset = self.model._default_manager.filter(pk=object_id) response = self.delete_selected(request, queryset) if response: return response url = reverse('admin:%s...
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The 'delete' admin view for this model.
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python
train
uw-it-aca/uw-restclients
restclients/bookstore.py
https://github.com/uw-it-aca/uw-restclients/blob/e12dcd32bf5296b6ebdf71798031594afb7852cb/restclients/bookstore.py#L56-L74
def get_books_for_schedule(self, schedule): """ Returns a dictionary of data. SLNs are the keys, an array of Book objects are the values. """ slns = self._get_slns(schedule) books = {} for sln in slns: try: section_books = self.get_b...
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Returns a dictionary of data. SLNs are the keys, an array of Book objects are the values.
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python
train
jaywink/federation
federation/protocols/diaspora/protocol.py
https://github.com/jaywink/federation/blob/59d31bb37e662891dbea72c1dee05dc53146c78b/federation/protocols/diaspora/protocol.py#L71-L83
def store_magic_envelope_doc(self, payload): """Get the Magic Envelope, trying JSON first.""" try: json_payload = json.loads(decode_if_bytes(payload)) except ValueError: # XML payload xml = unquote(decode_if_bytes(payload)) xml = xml.lstrip().encod...
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Get the Magic Envelope, trying JSON first.
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python
train
django-auth-ldap/django-auth-ldap
django_auth_ldap/config.py
https://github.com/django-auth-ldap/django-auth-ldap/blob/9ce3c2825527f8faa1793958b041816e63d839af/django_auth_ldap/config.py#L105-L122
def search_with_additional_terms(self, term_dict, escape=True): """ Returns a new search object with additional search terms and-ed to the filter string. term_dict maps attribute names to assertion values. If you don't want the values escaped, pass escape=False. """ term_...
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Returns a new search object with additional search terms and-ed to the filter string. term_dict maps attribute names to assertion values. If you don't want the values escaped, pass escape=False.
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python
train
bcbio/bcbio-nextgen
bcbio/qc/qualimap.py
https://github.com/bcbio/bcbio-nextgen/blob/6a9348c0054ccd5baffd22f1bb7d0422f6978b20/bcbio/qc/qualimap.py#L131-L139
def _parse_qualimap_globals_inregion(table): """Retrieve metrics from the global targeted region table. """ out = {} for row in table.find_all("tr"): col, val = [x.text for x in row.find_all("td")] if col == "Mapped reads": out.update(_parse_num_pct("%s (in regions)" % col, v...
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Retrieve metrics from the global targeted region table.
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python
train
gdestuynder/simple_bugzilla
bugzilla.py
https://github.com/gdestuynder/simple_bugzilla/blob/c69766a81fa7960a8f2b22287968fa4787f1bcfe/bugzilla.py#L77-L84
def put_bug(self, bugid, bug_update): '''http://bugzilla.readthedocs.org/en/latest/api/core/v1/bug.html#update-bug''' assert type(bug_update) is DotDict if (not 'ids' in bug_update): bug_update.ids = [bugid] return self._put('bug/{bugid}'.format(bugid=bugid), ...
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http://bugzilla.readthedocs.org/en/latest/api/core/v1/bug.html#update-bug
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python
train
openpaperwork/paperwork-backend
paperwork_backend/shell.py
https://github.com/openpaperwork/paperwork-backend/blob/114b831e94e039e68b339751fd18250877abad76/paperwork_backend/shell.py#L327-L401
def cmd_guess_labels(*args): """ Arguments: <document id> [-- [--apply]] Guess the labels that should be set on the document. Example: paperwork-shell guess_labels -- 20161207_1144_00_8 --apply Possible JSON replies: -- { "status": "error", "exception": "yyy", ...
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Arguments: <document id> [-- [--apply]] Guess the labels that should be set on the document. Example: paperwork-shell guess_labels -- 20161207_1144_00_8 --apply Possible JSON replies: -- { "status": "error", "exception": "yyy", "reason": "xxxx", "args": "(xxxx, )" ...
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python
train