kejian/codesearchnet-python-rebalanced · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def is_tone(char, strict=True): """ Check whether the character is a tone or word accent symbol. In strict mode return True only for the symbols listed in the last group of the chart. If strict=False, also accept symbols that belong to the Modifier Tone Letters Unicode block [1]. [1]: http://www.unicode.org/char...	[ "def", "is_tone", "(", "char", ",", "strict", "=", "True", ")", ":", "if", "char", "in", "chart", ".", "tones", ":", "return", "True", "if", "not", "strict", ":", "return", "0xA700", "<=", "ord", "(", "char", ")", "<=", "0xA71F", "return", "False" ]	27.25	0.028825
def _listen(self): """Listen for messages passed from parent This method distributes messages received via stdin to their corresponding channel. Based on the format of the incoming message, the message is forwarded to its corresponding channel to be processed by its correspondin...	[ "def", "_listen", "(", "self", ")", ":", "def", "_listen", "(", ")", ":", "\"\"\"This runs in a thread\"\"\"", "for", "line", "in", "iter", "(", "sys", ".", "stdin", ".", "readline", ",", "b\"\"", ")", ":", "try", ":", "response", "=", "json", ".", "lo...	38.534884	0.001177
def sum(context, key, value, multiplier=1): """ Adds the given value to the total value currently held in ``key``. Use the multiplier if you want to turn a positive value into a negative and actually substract from the current total sum. Usage:: {% sum "MY_TOTAL" 42 -1 %} {{ MY_TO...	[ "def", "sum", "(", "context", ",", "key", ",", "value", ",", "multiplier", "=", "1", ")", ":", "if", "key", "not", "in", "context", ".", "dicts", "[", "0", "]", ":", "context", ".", "dicts", "[", "0", "]", "[", "key", "]", "=", "0", "context", ...	26.529412	0.002141
def date_line_to_text(self, date_line): """ Return the textual representation of the given :class:`~taxi.timesheet.lines.DateLine` instance. The date format is set by the `date_format` parameter given when instanciating the parser instance. """ # Changing the date in a dateline i...	[ "def", "date_line_to_text", "(", "self", ",", "date_line", ")", ":", "# Changing the date in a dateline is not supported yet, but if it gets implemented someday this will need to be", "# changed", "if", "date_line", ".", "_text", "is", "not", "None", ":", "return", "date_line",...	52.181818	0.010274
def view_graph(graph_str, parent=None, prune_to=None): """View a graph.""" from rezgui.dialogs.ImageViewerDialog import ImageViewerDialog from rez.config import config # check for already written tempfile h = hash((graph_str, prune_to)) filepath = graph_file_lookup.get(h) if filepath and no...	[ "def", "view_graph", "(", "graph_str", ",", "parent", "=", "None", ",", "prune_to", "=", "None", ")", ":", "from", "rezgui", ".", "dialogs", ".", "ImageViewerDialog", "import", "ImageViewerDialog", "from", "rez", ".", "config", "import", "config", "# check for...	32.04	0.001212
def Stat(self, device_filename): """Get a file's stat() information.""" connection = self.protocol_handler.Open(self._handle, destination=b'sync:') mode, size, mtime = self.filesync_handler.Stat( connection, device_filename) connection.Close() return mode, size, mtime	[ "def", "Stat", "(", "self", ",", "device_filename", ")", ":", "connection", "=", "self", ".", "protocol_handler", ".", "Open", "(", "self", ".", "_handle", ",", "destination", "=", "b'sync:'", ")", "mode", ",", "size", ",", "mtime", "=", "self", ".", "...	44.857143	0.009375
def persist(name, value, config=None): ''' Assign and persist a simple sysctl parameter for this minion. If ``config`` is not specified, a sensible default will be chosen using :mod:`sysctl.default_config <salt.modules.linux_sysctl.default_config>`. CLI Example: .. code-block:: bash s...	[ "def", "persist", "(", "name", ",", "value", ",", "config", "=", "None", ")", ":", "if", "config", "is", "None", ":", "config", "=", "default_config", "(", ")", "edited", "=", "False", "# If the sysctl.conf is not present, add it", "if", "not", "os", ".", ...	36.444444	0.000297
def normalize_parameters(params): """ Normalize parameters """ params = params or {} normalized_parameters = OrderedDict() def get_value_like_as_php(val): """ Prepare value for quote """ try: base = basestring except NameError: ...	[ "def", "normalize_parameters", "(", "params", ")", ":", "params", "=", "params", "or", "{", "}", "normalized_parameters", "=", "OrderedDict", "(", ")", "def", "get_value_like_as_php", "(", "val", ")", ":", "\"\"\" Prepare value for quote \"\"\"", "try", ":", "base...	33.233333	0.001949
def set(self, value): """ Sets the value of the object :param value: A unicode string containing an IPv4 address, IPv4 address with CIDR, an IPv6 address or IPv6 address with CIDR """ if not isinstance(value, str_cls): raise TypeError(unwrap(...	[ "def", "set", "(", "self", ",", "value", ")", ":", "if", "not", "isinstance", "(", "value", ",", "str_cls", ")", ":", "raise", "TypeError", "(", "unwrap", "(", "'''\n %s value must be a unicode string, not %s\n '''", ",", "type_name", "...	30.928571	0.001791
def _send_broker_unaware_request(self, payloads, encoder_fn, decoder_fn): """ Attempt to send a broker-agnostic request to one of the available brokers. Keep trying until you succeed. """ hosts = set() for broker in self.brokers.values(): host, port, afi = get...	[ "def", "_send_broker_unaware_request", "(", "self", ",", "payloads", ",", "encoder_fn", ",", "decoder_fn", ")", ":", "hosts", "=", "set", "(", ")", "for", "broker", "in", "self", ".", "brokers", ".", "values", "(", ")", ":", "host", ",", "port", ",", "...	34.444444	0.002353
def get_dump_names(self, names, dumps=None): """ Find and return all dump names required (by dependancies) for a given dump names list Beware, the returned name list does not respect order, you should only use it when walking throught the "original" dict builded by OrderedDict ...	[ "def", "get_dump_names", "(", "self", ",", "names", ",", "dumps", "=", "None", ")", ":", "# Default value for dumps argument is an empty set (setting directly", "# as a python argument would result as a shared value between", "# instances)", "if", "dumps", "is", "None", ":", ...	36.823529	0.001556
def get_or_guess_labels(self, x, kwargs): """ Get the label to use in generating an adversarial example for x. The kwargs are fed directly from the kwargs of the attack. If 'y' is in kwargs, then assume it's an untargeted attack and use that as the label. If 'y_target' is in kwargs and is not no...	[ "def", "get_or_guess_labels", "(", "self", ",", "x", ",", "kwargs", ")", ":", "if", "'y'", "in", "kwargs", "and", "'y_target'", "in", "kwargs", ":", "raise", "ValueError", "(", "\"Can not set both 'y' and 'y_target'.\"", ")", "elif", "'y'", "in", "kwargs", ":"...	40.357143	0.009507
def format_as_html(explanation, # type: Explanation include_styles=True, # type: bool force_weights=True, # type: bool show=fields.ALL, preserve_density=None, # type: Optional[bool] highlight_spaces=None, # type: Optiona...	[ "def", "format_as_html", "(", "explanation", ",", "# type: Explanation", "include_styles", "=", "True", ",", "# type: bool", "force_weights", "=", "True", ",", "# type: bool", "show", "=", "fields", ".", "ALL", ",", "preserve_density", "=", "None", ",", "# type: O...	48.536585	0.002216
def _add_non_batch(self, TX_nodes, PmtInf_nodes): """ Method to add a transaction as non batch, will fold the transaction together with the payment info node and append to the main xml. """ PmtInf_nodes['PmtInfNode'].append(PmtInf_nodes['PmtInfIdNode']) PmtInf_nodes['PmtI...	[ "def", "_add_non_batch", "(", "self", ",", "TX_nodes", ",", "PmtInf_nodes", ")", ":", "PmtInf_nodes", "[", "'PmtInfNode'", "]", ".", "append", "(", "PmtInf_nodes", "[", "'PmtInfIdNode'", "]", ")", "PmtInf_nodes", "[", "'PmtInfNode'", "]", ".", "append", "(", ...	52.592593	0.001728
def as_xml(self,parent): """ Create XML representation of `self`. :Parameters: - `parent`: the element to which the created node should be linked to. :Types: - `parent`: `libxml2.xmlNode` :return: an XML node. :returntype: `libxml2.xmlNode` ...	[ "def", "as_xml", "(", "self", ",", "parent", ")", ":", "n", "=", "parent", ".", "newChild", "(", "None", ",", "\"status\"", ",", "None", ")", "n", ".", "setProp", "(", "\"code\"", ",", "\"%03i\"", "%", "(", "self", ".", "code", ",", ")", ")", "re...	28.2	0.018307
def parse_headers(self, req: Request, name: str, field: Field) -> typing.Any: """Pull a value from the header data.""" return core.get_value(req.headers, name, field)	[ "def", "parse_headers", "(", "self", ",", "req", ":", "Request", ",", "name", ":", "str", ",", "field", ":", "Field", ")", "->", "typing", ".", "Any", ":", "return", "core", ".", "get_value", "(", "req", ".", "headers", ",", "name", ",", "field", "...	60	0.010989
def debug_text_simple(self, text: str): """ Draws a text in the top left corner of the screen (up to a max of 6 messages it seems). Don't forget to add 'await self._client.send_debug'. """ self._debug_texts.append(self.to_debug_message(text))	[ "def", "debug_text_simple", "(", "self", ",", "text", ":", "str", ")", ":", "self", ".", "_debug_texts", ".", "append", "(", "self", ".", "to_debug_message", "(", "text", ")", ")" ]	85.333333	0.011628
def get_read_buffers(self, size): """Get buffer(s) from which we can read data. When done reading, use :meth:`advance_read_index` to make the memory available for writing again. :param size: The number of elements desired. :type size: int :returns: * The nu...	[ "def", "get_read_buffers", "(", "self", ",", "size", ")", ":", "ptr1", "=", "self", ".", "_ffi", ".", "new", "(", "'void'", ")", "ptr2", "=", "self", ".", "_ffi", ".", "new", "(", "'void'", ")", "size1", "=", "self", ".", "_ffi", ".", "new", ...	38.56	0.002024
def total_size(obj): """Returns the approximate total memory footprint an object.""" seen = set() def sizeof(current_obj): try: return _sizeof(current_obj) except Exception: # pylint: disable=broad-except # Not sure what just happened, but let's assume it's a reference. return struct.ca...	[ "def", "total_size", "(", "obj", ")", ":", "seen", "=", "set", "(", ")", "def", "sizeof", "(", "current_obj", ")", ":", "try", ":", "return", "_sizeof", "(", "current_obj", ")", "except", "Exception", ":", "# pylint: disable=broad-except", "# Not sure what jus...	37.466667	0.01301
def RetryOnUnavailable(func): """Function decorator to retry on a service unavailable exception.""" @functools.wraps(func) def Wrapper(args, kwargs): while True: try: response = func(args, **kwargs) except (httpclient.HTTPException, socket.error, urlerror.URLError) as e: time....	[ "def", "RetryOnUnavailable", "(", "func", ")", ":", "@", "functools", ".", "wraps", "(", "func", ")", "def", "Wrapper", "(", "", "args", ",", "", "", "kwargs", ")", ":", "while", "True", ":", "try", ":", "response", "=", "func", "(", "", "args"...	30.545455	0.018759
def _execute_callback(self, status, message, job, res, err, stacktrace): """Execute the callback. :param status: Job status. Possible values are "invalid" (job could not be deserialized or was malformed), "failure" (job raised an error), "timeout" (job timed out), or "success" (...	[ "def", "_execute_callback", "(", "self", ",", "status", ",", "message", ",", "job", ",", "res", ",", "err", ",", "stacktrace", ")", ":", "if", "self", ".", "_callback", "is", "not", "None", ":", "try", ":", "self", ".", "_logger", ".", "info", "(", ...	47.384615	0.001591
def without(seq1, seq2): r"""Return a list with all elements in `seq2` removed from `seq1`, order preserved. Examples: >>> without([1,2,3,1,2], [1]) [2, 3, 2] """ if isSet(seq2): d2 = seq2 else: d2 = set(seq2) return [elt for elt in seq1 if elt not in d2]	[ "def", "without", "(", "seq1", ",", "seq2", ")", ":", "if", "isSet", "(", "seq2", ")", ":", "d2", "=", "seq2", "else", ":", "d2", "=", "set", "(", "seq2", ")", "return", "[", "elt", "for", "elt", "in", "seq1", "if", "elt", "not", "in", "d2", ...	23.5	0.010239
def add_arguments(self, parser): """Adds the arguments for the emulator command. Args: self (EmulatorCommand): the ``EmulatorCommand`` instance parser (argparse.ArgumentParser): parser to add the commands to Returns: ``None`` """ group = parser.add...	[ "def", "add_arguments", "(", "self", ",", "parser", ")", ":", "group", "=", "parser", ".", "add_mutually_exclusive_group", "(", "required", "=", "True", ")", "group", ".", "add_argument", "(", "'-l'", ",", "'--list'", ",", "nargs", "=", "'?'", ",", "type",...	41.8	0.002339
def _validate(self): """ The purpose of this method is to verify that the user has set sensible values for the training program before rendering. The user will still be able to render, but error messages will be printed. This method: * Validates that the average ...	[ "def", "_validate", "(", "self", ")", ":", "# Validate the intensity", "if", "max", "(", "[", "s", "*", "self", ".", "intensity", "for", "s", "in", "self", ".", "_intensity_scalers", "]", ")", ">", "85", ":", "warnings", ".", "warn", "(", "'\\nWARNING: A...	49.156863	0.001955
def _init_sys_auto_lookup(self): """Return a list of tuples of available init systems on the current machine. Note that in some situations (Ubuntu 14.04 for instance) more than one init system can be found. """ # TODO: Instead, check for executables for systemd and upsta...	[ "def", "_init_sys_auto_lookup", "(", "self", ")", ":", "# TODO: Instead, check for executables for systemd and upstart", "# systemctl for systemd and initctl for upstart.", "# An alternative might be to check the second answer here:", "# http://unix.stackexchange.com/questions/196166/how-to-find-o...	48.55	0.00202
def set_status(self, value): """ Set the status of the motor to the specified value if not already set. """ if not self._status == value: old = self._status self._status = value logger.info("{} changing status from {} to {}".format(self, old.name, valu...	[ "def", "set_status", "(", "self", ",", "value", ")", ":", "if", "not", "self", ".", "_status", "==", "value", ":", "old", "=", "self", ".", "_status", "self", ".", "_status", "=", "value", "logger", ".", "info", "(", "\"{} changing status from {} to {}\"",...	40.444444	0.008065
def get(self, orig_key): """Get cache entry for key, or return None.""" resp = requests.Response() key = self._clean_key(orig_key) path = os.path.join(self.cache_dir, key) try: with open(path, 'rb') as f: # read lines one at a time wh...	[ "def", "get", "(", "self", ",", "orig_key", ")", ":", "resp", "=", "requests", ".", "Response", "(", ")", "key", "=", "self", ".", "_clean_key", "(", "orig_key", ")", "path", "=", "os", ".", "path", ".", "join", "(", "self", ".", "cache_dir", ",", ...	42.444444	0.002047
def store(self, key, pk, value): """Store the value/pk in the sorted set index For the parameters, see BaseRangeIndex.store We simple store the pk as a member of the sorted set with the value being the score """ self.connection.zadd(key, value, pk)	[ "def", "store", "(", "self", ",", "key", ",", "pk", ",", "value", ")", ":", "self", ".", "connection", ".", "zadd", "(", "key", ",", "value", ",", "pk", ")" ]	31.444444	0.010309
def from_xarray(da, crs=None, apply_transform=False, nan_nodata=False, **kwargs): """ Returns an RGB or Image element given an xarray DataArray loaded using xr.open_rasterio. If a crs attribute is present on the loaded data it will attempt to decode it into a cartopy projection otherwise it wil...	[ "def", "from_xarray", "(", "da", ",", "crs", "=", "None", ",", "apply_transform", "=", "False", ",", "nan_nodata", "=", "False", ",", "", "", "kwargs", ")", ":", "if", "crs", ":", "kwargs", "[", "'crs'", "]", "=", "crs", "elif", "hasattr", "(", "...	33.159091	0.001997
def post_document(self, data): """ Create and analyze a new document data -- A Dictionary representing the new document """ data.update({ 'client' : CLIENT }) return self._call('POST', self._generate_url_path('documents'), data)	[ "def", "post_document", "(", "self", ",", "data", ")", ":", "data", ".", "update", "(", "{", "'client'", ":", "CLIENT", "}", ")", "return", "self", ".", "_call", "(", "'POST'", ",", "self", ".", "_generate_url_path", "(", "'documents'", ")", ",", "data...	35.142857	0.015873
def start(self): """ Start animation thread. """ self.thread = threading.Thread(target=self._animate) self.thread.start() return	[ "def", "start", "(", "self", ")", ":", "self", ".", "thread", "=", "threading", ".", "Thread", "(", "target", "=", "self", ".", "_animate", ")", "self", ".", "thread", ".", "start", "(", ")", "return" ]	24.285714	0.011364
def _request(self, req_and_resp, **kwargs): """ Take a request_and_response object from pyswagger.App and check auth, token, headers, prepare the actual request and fill the response Note on performance : if you need more performance (because you are using this in a batch)...	[ "def", "_request", "(", "self", ",", "req_and_resp", ",", "", "", "kwargs", ")", ":", "opt", "=", "kwargs", ".", "pop", "(", "'opt'", ",", "{", "}", ")", "# reset the request and response to reuse existing req_and_resp\r", "req_and_resp", "[", "0", "]", ".",...	38.891892	0.000678
def node(self, parent=None, tag='g', attrib=None, **extras): """Make a new svg node""" if parent is None: parent = self.root attrib = attrib or {} attrib.update(extras) def in_attrib_and_number(key): return key in attrib and isinstance(attrib[key], Number...	[ "def", "node", "(", "self", ",", "parent", "=", "None", ",", "tag", "=", "'g'", ",", "attrib", "=", "None", ",", "", "", "extras", ")", ":", "if", "parent", "is", "None", ":", "parent", "=", "self", ".", "root", "attrib", "=", "attrib", "or", ...	37.068966	0.001813
def predict_variant_effect_on_transcript(variant, transcript): """Return the transcript effect (such as FrameShift) that results from applying this genomic variant to a particular transcript. Parameters ---------- transcript : Transcript Transcript we're going to ap...	[ "def", "predict_variant_effect_on_transcript", "(", "variant", ",", "transcript", ")", ":", "if", "transcript", ".", "__class__", "is", "not", "Transcript", ":", "raise", "TypeError", "(", "\"Expected %s : %s to have type Transcript\"", "%", "(", "transcript", ",", "t...	40.242991	0.001133
async def print_what_is_playing(loop): """Connect to device and print what is playing.""" details = conf.AppleTV(ADDRESS, NAME) details.add_service(conf.DmapService(HSGID)) print('Connecting to {}'.format(details.address)) atv = pyatv.connect_to_apple_tv(details, loop) try: print((awai...	[ "async", "def", "print_what_is_playing", "(", "loop", ")", ":", "details", "=", "conf", ".", "AppleTV", "(", "ADDRESS", ",", "NAME", ")", "details", ".", "add_service", "(", "conf", ".", "DmapService", "(", "HSGID", ")", ")", "print", "(", "'Connecting to ...	31.384615	0.002381
def generate_fileattr_metadata(local_path, metadata): # type: (blobxfer.models.upload.LocalPath, dict) -> dict """Generate file attribute metadata dict :param blobxfer.models.upload.LocalPath local_path: local path :param dict metadata: existing metadata dict :rtype: dict :return: merged metadat...	[ "def", "generate_fileattr_metadata", "(", "local_path", ",", "metadata", ")", ":", "# type: (blobxfer.models.upload.LocalPath, dict) -> dict", "if", "blobxfer", ".", "util", ".", "on_windows", "(", ")", ":", "global", "_FILEATTR_WARNED_ON_WINDOWS", "if", "not", "_FILEATTR...	38.777778	0.000932
def is_docstring(tokens, previous_logical): """Return found docstring 'A docstring is a string literal that occurs as the first statement in a module, function, class,' http://www.python.org/dev/peps/pep-0257/#what-is-a-docstring """ for token_type, text, start, _, _ in tokens: if token...	[ "def", "is_docstring", "(", "tokens", ",", "previous_logical", ")", ":", "for", "token_type", ",", "text", ",", "start", ",", "_", ",", "_", "in", "tokens", ":", "if", "token_type", "==", "tokenize", ".", "STRING", ":", "break", "elif", "token_type", "!=...	34.3	0.001418
def _unpack_msg(self, *msg): """ Convert all message elements to string """ l = [] for m in msg: l.append(str(m)) return " ".join(l)	[ "def", "_unpack_msg", "(", "self", ",", "*", "msg", ")", ":", "l", "=", "[", "]", "for", "m", "in", "msg", ":", "l", ".", "append", "(", "str", "(", "m", ")", ")", "return", "\" \"", ".", "join", "(", "l", ")" ]	23.125	0.015625
def write(self, chunk: Union[str, bytes, dict]) -> None: """Writes the given chunk to the output buffer. To write the output to the network, use the `flush()` method below. If the given chunk is a dictionary, we write it as JSON and set the Content-Type of the response to be ``applicat...	[ "def", "write", "(", "self", ",", "chunk", ":", "Union", "[", "str", ",", "bytes", ",", "dict", "]", ")", "->", "None", ":", "if", "self", ".", "_finished", ":", "raise", "RuntimeError", "(", "\"Cannot write() after finish()\"", ")", "if", "not", "isinst...	49.387097	0.001281
def DateTimeField(formatter=types.DEFAULT_DATETIME_FORMAT, default=NOTHING, required=True, repr=True, cmp=True, key=None): """ Create new datetime field on a model. :param formatter: datetime formatter string (default: "ISO_FORMAT") :param default: any datetime or string that can be c...	[ "def", "DateTimeField", "(", "formatter", "=", "types", ".", "DEFAULT_DATETIME_FORMAT", ",", "default", "=", "NOTHING", ",", "required", "=", "True", ",", "repr", "=", "True", ",", "cmp", "=", "True", ",", "key", "=", "None", ")", ":", "default", "=", ...	54.888889	0.000995
def createStyle(self, body, verbose=None): """ Creates a new Visual Style using the message body. Returns the title of the new Visual Style. If the title of the Visual Style already existed in the session, a new one will be automatically generated and returned. :param body: The...	[ "def", "createStyle", "(", "self", ",", "body", ",", "verbose", "=", "None", ")", ":", "PARAMS", "=", "set_param", "(", "[", "'body'", "]", ",", "[", "body", "]", ")", "response", "=", "api", "(", "url", "=", "self", ".", "___url", "+", "'styles'",...	40.4	0.012903
def obfn_reg(self): r"""Compute regularisation term, :math:`\\| x \\|_1`, and contribution to objective function. """ l1 = np.sum(mp_wl1np.abs(self.obfn_gvar())) return (self.lmbdal1, l1)	[ "def", "obfn_reg", "(", "self", ")", ":", "l1", "=", "np", ".", "sum", "(", "mp_wl1", "", "np", ".", "abs", "(", "self", ".", "obfn_gvar", "(", ")", ")", ")", "return", "(", "self", ".", "lmbda", "", "l1", ",", "l1", ")" ]	37	0.008811
def scaled_pressure2_encode(self, time_boot_ms, press_abs, press_diff, temperature): ''' Barometer readings for 2nd barometer time_boot_ms : Timestamp (milliseconds since system boot) (uint32_t) press_abs : Absolute pressure (...	[ "def", "scaled_pressure2_encode", "(", "self", ",", "time_boot_ms", ",", "press_abs", ",", "press_diff", ",", "temperature", ")", ":", "return", "MAVLink_scaled_pressure2_message", "(", "time_boot_ms", ",", "press_abs", ",", "press_diff", ",", "temperature", ")" ]	58.909091	0.012158
def tob32(val): """Return provided 32 bit value as a string of four bytes.""" ret = bytearray(4) ret[0] = (val>>24)&M8 ret[1] = (val>>16)&M8 ret[2] = (val>>8)&M8 ret[3] = val&M8 return ret	[ "def", "tob32", "(", "val", ")", ":", "ret", "=", "bytearray", "(", "4", ")", "ret", "[", "0", "]", "=", "(", "val", ">>", "24", ")", "&", "M8", "ret", "[", "1", "]", "=", "(", "val", ">>", "16", ")", "&", "M8", "ret", "[", "2", "]", "=...	26.125	0.037037
def html_table_from_query(rows: Iterable[Iterable[Optional[str]]], descriptions: Iterable[Optional[str]]) -> str: """ Converts rows from an SQL query result to an HTML table. Suitable for processing output from the defunct function ``rnc_db.fetchall_with_fieldnames(sql)``. ...	[ "def", "html_table_from_query", "(", "rows", ":", "Iterable", "[", "Iterable", "[", "Optional", "[", "str", "]", "]", "]", ",", "descriptions", ":", "Iterable", "[", "Optional", "[", "str", "]", "]", ")", "->", "str", ":", "html", "=", "u\"<table>\\n\"",...	26.964286	0.001279
def squared_error(y, y_pred): """Calculates the sum of the squared differences between target and prediction. Parameters: ----------- y : vector, shape (n_samples,) The target values. y_pred : vector, shape (n_samples,) The predicted values. Returns: -------- error...	[ "def", "squared_error", "(", "y", ",", "y_pred", ")", ":", "y", ",", "y_pred", "=", "convert_assert", "(", "y", ",", "y_pred", ")", "return", "np", ".", "sum", "(", "(", "y", "-", "y_pred", ")", "**", "2", ")" ]	22.761905	0.008032
def eigenvalues(T, k=None, reversible=False, mu=None): r"""Compute eigenvalues of given transition matrix. Parameters ---------- T : (d, d) ndarray Transition matrix (stochastic matrix) k : int or tuple of ints, optional Compute the first k eigenvalues of T reversible : bool, op...	[ "def", "eigenvalues", "(", "T", ",", "k", "=", "None", ",", "reversible", "=", "False", ",", "mu", "=", "None", ")", ":", "if", "reversible", ":", "try", ":", "evals", "=", "eigenvalues_rev", "(", "T", ",", "k", "=", "k", ",", "mu", "=", "mu", ...	29.592593	0.001211
def stage_pywbem_args(self, method, **kwargs): """ Log request method and all args. Normally called before the cmd is executed to record request parameters. This method does not support the summary detail_level because that seems to add little info to the log that is not ...	[ "def", "stage_pywbem_args", "(", "self", ",", "method", ",", "", "", "kwargs", ")", ":", "# pylint: disable=attribute-defined-outside-init", "self", ".", "_pywbem_method", "=", "method", "if", "self", ".", "enabled", "and", "self", ".", "api_detail_level", "is",...	46.151515	0.001286
def weather_at_places(self, pattern, searchtype, limit=None): """ Queries the OWM Weather API for the currently observed weather in all the locations whose name is matching the specified text search parameters. A twofold search can be issued: 'accurate' (exact matching) and *'l...	[ "def", "weather_at_places", "(", "self", ",", "pattern", ",", "searchtype", ",", "limit", "=", "None", ")", ":", "assert", "isinstance", "(", "pattern", ",", "str", ")", ",", "\"'pattern' must be a str\"", "assert", "isinstance", "(", "searchtype", ",", "str",...	56.780488	0.001689
def hover(self): """ Hovers the element """ def do_hover(): """ Perform hover """ ActionChains(self.driver_wrapper.driver).move_to_element(self.element).perform() return self.execute_and_handle_webelement_exceptions(do_hover, 'hover...	[ "def", "hover", "(", "self", ")", ":", "def", "do_hover", "(", ")", ":", "\"\"\"\n Perform hover\n \"\"\"", "ActionChains", "(", "self", ".", "driver_wrapper", ".", "driver", ")", ".", "move_to_element", "(", "self", ".", "element", ")", "....	31.3	0.009317
def new_mountpoint(self, name): """Create a new mountpoint""" url = posixpath.join(self.path, name) r = self._jfs.post(url, extra_headers={'content-type': 'application/x-www-form-urlencoded'}) return r	[ "def", "new_mountpoint", "(", "self", ",", "name", ")", ":", "url", "=", "posixpath", ".", "join", "(", "self", ".", "path", ",", "name", ")", "r", "=", "self", ".", "_jfs", ".", "post", "(", "url", ",", "extra_headers", "=", "{", "'content-type'", ...	45.8	0.012876
def have_same_structure(d1, d2): """ Given two dictionaries (possibly with other nested dictionaries as values), this function checks whether they have the same key structure. >>> from sem import DatabaseManager >>> d1 = {'a': 1, 'b': 2} >>> d2 = {'a': [], 'b': 3} ...	[ "def", "have_same_structure", "(", "d1", ",", "d2", ")", ":", "# Keys of this level are the same", "if", "set", "(", "d1", ".", "keys", "(", ")", ")", "!=", "set", "(", "d2", ".", "keys", "(", ")", ")", ":", "return", "False", "# Check nested dictionaries"...	36.74359	0.00136
def _ord2ymd(n): "ordinal -> (year, month, day), considering 01-Jan-0001 as day 1." # n is a 1-based index, starting at 1-Jan-1. The pattern of leap years # repeats exactly every 400 years. The basic strategy is to find the # closest 400-year boundary at or before n, then work with the offset # f...	[ "def", "_ord2ymd", "(", "n", ")", ":", "# n is a 1-based index, starting at 1-Jan-1. The pattern of leap years", "# repeats exactly every 400 years. The basic strategy is to find the", "# closest 400-year boundary at or before n, then work with the offset", "# from that boundary to n. Life is m...	43.344262	0.00037
def is_rigid(matrix): """ Check to make sure a homogeonous transformation matrix is a rigid body transform. Parameters ----------- matrix: possibly a transformation matrix Returns ----------- check: bool, True if matrix is a valid (4,4) rigid body transform. """ matrix = n...	[ "def", "is_rigid", "(", "matrix", ")", ":", "matrix", "=", "np", ".", "asanyarray", "(", "matrix", ",", "dtype", "=", "np", ".", "float64", ")", "if", "matrix", ".", "shape", "!=", "(", "4", ",", "4", ")", ":", "return", "False", "if", "not", "np...	22.038462	0.001672
def get_os_codename_install_source(src): '''Derive OpenStack release codename from a given installation source.''' ubuntu_rel = lsb_release()['DISTRIB_CODENAME'] rel = '' if src is None: return rel if src in ['distro', 'distro-proposed', 'proposed']: try: rel = UBUNTU_OPE...	[ "def", "get_os_codename_install_source", "(", "src", ")", ":", "ubuntu_rel", "=", "lsb_release", "(", ")", "[", "'DISTRIB_CODENAME'", "]", "rel", "=", "''", "if", "src", "is", "None", ":", "return", "rel", "if", "src", "in", "[", "'distro'", ",", "'distro-...	33.444444	0.001076
def join(self, glue=" "): """ Javascript's join implementation """ j = glue.join([str(x) for x in self.obj]) return self._wrap(j)	[ "def", "join", "(", "self", ",", "glue", "=", "\" \"", ")", ":", "j", "=", "glue", ".", "join", "(", "[", "str", "(", "x", ")", "for", "x", "in", "self", ".", "obj", "]", ")", "return", "self", ".", "_wrap", "(", "j", ")" ]	31.4	0.012422
def handle_input(self, input_hdr): """ This method tries to ensure that the input data has the correct dimensions. INPUTS: input_hdr (no default) Header from which data shape is to be extracted. """ input_slice = input_hdr['NAXIS']*[0] for i in range(input...	[ "def", "handle_input", "(", "self", ",", "input_hdr", ")", ":", "input_slice", "=", "input_hdr", "[", "'NAXIS'", "]", "*", "[", "0", "]", "for", "i", "in", "range", "(", "input_hdr", "[", "'NAXIS'", "]", ")", ":", "if", "input_hdr", "[", "'CTYPE%d'", ...	32.941176	0.010417
def _auth(profile=None): ''' Set up neutron credentials ''' credentials = __salt__['config.option'](profile) kwargs = { 'username': credentials['keystone.user'], 'password': credentials['keystone.password'], 'tenant_name': credentials['keystone.tenant'], 'auth_url': c...	[ "def", "_auth", "(", "profile", "=", "None", ")", ":", "credentials", "=", "__salt__", "[", "'config.option'", "]", "(", "profile", ")", "kwargs", "=", "{", "'username'", ":", "credentials", "[", "'keystone.user'", "]", ",", "'password'", ":", "credentials",...	34.466667	0.001883
def LL(n): """constructs the LL context""" if (n<=0):return Context('0') else: LL1=LL(n-1) r1 = C1(3(n-1),2(n-1)) - LL1 - LL1 r2 = LL1 - LL1 - LL1 return r1 + r2	[ "def", "LL", "(", "n", ")", ":", "if", "(", "n", "<=", "0", ")", ":", "return", "Context", "(", "'0'", ")", "else", ":", "LL1", "=", "LL", "(", "n", "-", "1", ")", "r1", "=", "C1", "(", "3", "*", "(", "n", "-", "1", ")", ",", "2", "...	25.25	0.028708
def decrypt(receiver_prvhex: str, msg: bytes) -> bytes: """ Decrypt with eth private key Parameters ---------- receiver_pubhex: str Receiver's ethereum private key hex string msg: bytes Data to decrypt Returns ------- bytes Plain text """ pubkey = ms...	[ "def", "decrypt", "(", "receiver_prvhex", ":", "str", ",", "msg", ":", "bytes", ")", "->", "bytes", ":", "pubkey", "=", "msg", "[", "0", ":", "65", "]", "# pubkey's length is 65 bytes", "encrypted", "=", "msg", "[", "65", ":", "]", "sender_public_key", "...	24.863636	0.001761
def reset (self): """ Initialize FTP url data. """ super(FtpUrl, self).reset() # list of files for recursion self.files = [] # last part of URL filename self.filename = None self.filename_encoding = 'iso-8859-1'	[ "def", "reset", "(", "self", ")", ":", "super", "(", "FtpUrl", ",", "self", ")", ".", "reset", "(", ")", "# list of files for recursion", "self", ".", "files", "=", "[", "]", "# last part of URL filename", "self", ".", "filename", "=", "None", "self", ".",...	27.4	0.010601
def get_all(jail=None): ''' Return a list of all available services .. versionchanged:: 2016.3.4 jail: optional jid or jail name CLI Example: .. code-block:: bash salt '*' service.get_all ''' ret = [] service = _cmd(jail) for srv in __salt__['cmd.run']('{0} -l'.forma...	[ "def", "get_all", "(", "jail", "=", "None", ")", ":", "ret", "=", "[", "]", "service", "=", "_cmd", "(", "jail", ")", "for", "srv", "in", "__salt__", "[", "'cmd.run'", "]", "(", "'{0} -l'", ".", "format", "(", "service", ")", ")", ".", "splitlines"...	20.35	0.002347
def computePCsPlink(plink_path,k,out_dir,bfile,ffile): """ computing the covariance matrix via plink """ print("Using plink to compute principal components") cmd = '%s --bfile %s --pca %d '%(plink_path,bfile,k) cmd+= '--out %s'%(os.path.join(out_dir,'plink')) subprocess.call(cmd,shell=True) ...	[ "def", "computePCsPlink", "(", "plink_path", ",", "k", ",", "out_dir", ",", "bfile", ",", "ffile", ")", ":", "print", "(", "\"Using plink to compute principal components\"", ")", "cmd", "=", "'%s --bfile %s --pca %d '", "%", "(", "plink_path", ",", "bfile", ",", ...	35.5	0.035294
def detect(self, G): """Detect a single core-periphery pair using the Borgatti-Everett algorithm. Parameters ---------- G : NetworkX graph object Examples -------- >>> import networkx as nx >>> import cpalgorithm as cpa >>> G = nx.karate_club_graph() # load the karate club network. >>> be = c...	[ "def", "detect", "(", "self", ",", "G", ")", ":", "node_pairs", ",", "w", ",", "node2id", ",", "id2node", "=", "self", ".", "_to_edge_list", "(", "G", ")", "cppairs", "=", "_cp", ".", "detect_be", "(", "edges", "=", "node_pairs", ",", "ws", "=", "w...	26.730769	0.045833
def display_event(div, attributes=[]): """ Function to build a suitable CustomJS to display the current event in the div model. """ style = 'float: left; clear: left; font-size: 10pt' return CustomJS(args=dict(div=div), code=""" var attrs = %s; var args = []; for (var i =...	[ "def", "display_event", "(", "div", ",", "attributes", "=", "[", "]", ")", ":", "style", "=", "'float: left; clear: left; font-size: 10pt'", "return", "CustomJS", "(", "args", "=", "dict", "(", "div", "=", "div", ")", ",", "code", "=", "\"\"\"\n var att...	38.636364	0.002296
def add_server(self,address,port=default_port,password=None,speed=None,valid_times=None,invalid_times=None): ''' :address: remote address of server, or special string ``local`` to run the command locally :valid_times: times when this server is availabl...	[ "def", "add_server", "(", "self", ",", "address", ",", "port", "=", "default_port", ",", "password", "=", "None", ",", "speed", "=", "None", ",", "valid_times", "=", "None", ",", "invalid_times", "=", "None", ")", ":", "for", "t", "in", "[", "valid_tim...	48.351351	0.014247
def get(self, jid=None): # pylint: disable=W0221 ''' A convenience URL for getting lists of previously run jobs or getting the return from a single job .. http:get:: /jobs/(jid) List jobs or show a single job from the job cache. :status 200: \|200\| ...	[ "def", "get", "(", "self", ",", "jid", "=", "None", ")", ":", "# pylint: disable=W0221", "# if you aren't authenticated, redirect to login", "if", "not", "self", ".", "_verify_auth", "(", ")", ":", "self", ".", "redirect", "(", "'/login'", ")", "return", "if", ...	24	0.000808
def train_transform(self, images, surpress_mapping_check = False): r""" See also -------- train, transform """ ret = self.train(images) outputs = [self.transform(i, surpress_mapping_check) for i in images] return ret, outputs	[ "def", "train_transform", "(", "self", ",", "images", ",", "surpress_mapping_check", "=", "False", ")", ":", "ret", "=", "self", ".", "train", "(", "images", ")", "outputs", "=", "[", "self", ".", "transform", "(", "i", ",", "surpress_mapping_check", ")", ...	31.222222	0.013841
def queriessam2dalignbed(cfg): """ Processes SAM file to get the genomic coordinates in BED format step#2 :param cfg: configuration dict """ datatmpd=cfg['datatmpd'] alignmentbedp=cfg['alignmentbedp'] dalignbedp=cfg['dalignbedp'] logging.info(basename(dalignbedp)) if not exists(...	[ "def", "queriessam2dalignbed", "(", "cfg", ")", ":", "datatmpd", "=", "cfg", "[", "'datatmpd'", "]", "alignmentbedp", "=", "cfg", "[", "'alignmentbedp'", "]", "dalignbedp", "=", "cfg", "[", "'dalignbedp'", "]", "logging", ".", "info", "(", "basename", "(", ...	46.851852	0.016258
def is_prune(self): """ Return True, if `git fetch --prune` is allowed. Because of possible incompatibilities, this requires special treatment. """ required_version = "1.6.6" config_value = self.settings['fetch.prune'] if self.git.is_version_mi...	[ "def", "is_prune", "(", "self", ")", ":", "required_version", "=", "\"1.6.6\"", "config_value", "=", "self", ".", "settings", "[", "'fetch.prune'", "]", "if", "self", ".", "git", ".", "is_version_min", "(", "required_version", ")", ":", "return", "config_value...	38.619048	0.002407
def __we_c(cls, calib, tc, temp, we_v, ae_v): """ Compute weC from sensor temperature compensation of weV, aeV """ we_t = we_v - (calib.we_elc_mv / 1000.0) # remove electronic we zero ae_t = ae_v - (calib.ae_elc_mv / 1000.0) # remove electronic ae zero we_c...	[ "def", "__we_c", "(", "cls", ",", "calib", ",", "tc", ",", "temp", ",", "we_v", ",", "ae_v", ")", ":", "we_t", "=", "we_v", "-", "(", "calib", ".", "we_elc_mv", "/", "1000.0", ")", "# remove electronic we zero", "ae_t", "=", "ae_v", "-", "(", "calib"...	38.75	0.010504
def _parse_args(func, variables, annotations=None): """Return a list of arguments with the variable it reads. NOTE: Multiple arguments may read the same variable. """ arg_read_var = [] for arg_name, anno in (annotations or func.__annotations__).items(): if arg_name == 'return': ...	[ "def", "_parse_args", "(", "func", ",", "variables", ",", "annotations", "=", "None", ")", ":", "arg_read_var", "=", "[", "]", "for", "arg_name", ",", "anno", "in", "(", "annotations", "or", "func", ".", "__annotations__", ")", ".", "items", "(", ")", ...	37.923077	0.00198
def get_response(self, url, timeout=None): """Return http request response. """ if not timeout: timeout = self.default_timeout if self.default_sleeptime: time.sleep(self.default_sleeptime) try: return self.auth.get(url, headers=self.default_h...	[ "def", "get_response", "(", "self", ",", "url", ",", "timeout", "=", "None", ")", ":", "if", "not", "timeout", ":", "timeout", "=", "self", ".", "default_timeout", "if", "self", ".", "default_sleeptime", ":", "time", ".", "sleep", "(", "self", ".", "de...	29.538462	0.010101
def popleft(self): """Removes and returns the oldest read pulse.""" self._mq.send("^", True, type=1) message = self._wait_receive_msg() reply = int(message[0].decode('utf-8')) #print(reply) if reply == -1: raise IndexError("pop from empty list") return...	[ "def", "popleft", "(", "self", ")", ":", "self", ".", "_mq", ".", "send", "(", "\"^\"", ",", "True", ",", "type", "=", "1", ")", "message", "=", "self", ".", "_wait_receive_msg", "(", ")", "reply", "=", "int", "(", "message", "[", "0", "]", ".", ...	35.333333	0.009202
def _sort_layers(self): """Sort the layers by depth.""" self._layers = OrderedDict(sorted(self._layers.items(), key=lambda t: t[0]))	[ "def", "_sort_layers", "(", "self", ")", ":", "self", ".", "_layers", "=", "OrderedDict", "(", "sorted", "(", "self", ".", "_layers", ".", "items", "(", ")", ",", "key", "=", "lambda", "t", ":", "t", "[", "0", "]", ")", ")" ]	48.666667	0.02027
def is_ambiguous(self, dt, idx=None): """ Whether or not the "wall time" of a given datetime is ambiguous in this zone. :param dt: A :py:class:`datetime.datetime`, naive or time zone aware. :return: Returns ``True`` if ambiguous, ``False`` otherwise. ...	[ "def", "is_ambiguous", "(", "self", ",", "dt", ",", "idx", "=", "None", ")", ":", "if", "idx", "is", "None", ":", "idx", "=", "self", ".", "_find_last_transition", "(", "dt", ")", "# Calculate the difference in offsets from current to previous", "timestamp", "="...	27.964286	0.002469
def validatefeatures(self,features): """Returns features in validated form, or raises an Exception. Mostly for internal use""" validatedfeatures = [] for feature in features: if isinstance(feature, int) or isinstance(feature, float): validatedfeatures.append( str(feat...	[ "def", "validatefeatures", "(", "self", ",", "features", ")", ":", "validatedfeatures", "=", "[", "]", "for", "feature", "in", "features", ":", "if", "isinstance", "(", "feature", ",", "int", ")", "or", "isinstance", "(", "feature", ",", "float", ")", ":...	53.538462	0.012712
def average_neighbor_distance(points, num_neigh): """! @brief Returns average distance for establish links between specified number of nearest neighbors. @param[in] points (list): Input data, list of points where each point represented by list. @param[in] num_neigh (uint): Number of neighbors ...	[ "def", "average_neighbor_distance", "(", "points", ",", "num_neigh", ")", ":", "if", "num_neigh", ">", "len", "(", "points", ")", "-", "1", ":", "raise", "NameError", "(", "'Impossible to calculate average distance to neighbors when number of object is less than number of n...	44.6	0.021214
def convert_to_shape(x): """Converts input to a Shape. Args: x: Shape, str, or None. Returns: Shape or None. Raises: ValueError: If x cannot be converted to a Shape. """ if x is None: return None if isinstance(x, Shape): return x if isinstance(x, str): x = _parse_string_to_lis...	[ "def", "convert_to_shape", "(", "x", ")", ":", "if", "x", "is", "None", ":", "return", "None", "if", "isinstance", "(", "x", ",", "Shape", ")", ":", "return", "x", "if", "isinstance", "(", "x", ",", "str", ")", ":", "x", "=", "_parse_string_to_list_o...	18.631579	0.016129
def image_update(id=None, name=None, profile=None, *kwargs): # pylint: disable=C0103 ''' Update properties of given image. Known to work for: - min_ram (in MB) - protected (bool) - visibility ('public' or 'private') CLI Example: .. code-block:: bash salt '' glance.image_upd...	[ "def", "image_update", "(", "id", "=", "None", ",", "name", "=", "None", ",", "profile", "=", "None", ",", "", "", "kwargs", ")", ":", "# pylint: disable=C0103", "if", "id", ":", "image", "=", "image_show", "(", "id", "=", "id", ",", "profile", "="...	31.3	0.001239
def notify_barriers(self, slot_key, cursor, use_barrier_indexes, max_to_notify=_MAX_BARRIERS_TO_NOTIFY): """Searches for barriers affected by a slot and triggers completed ones. Args: slot_key: db.Key or stringified k...	[ "def", "notify_barriers", "(", "self", ",", "slot_key", ",", "cursor", ",", "use_barrier_indexes", ",", "max_to_notify", "=", "_MAX_BARRIERS_TO_NOTIFY", ")", ":", "if", "not", "isinstance", "(", "slot_key", ",", "db", ".", "Key", ")", ":", "slot_key", "=", "...	42.275862	0.009563
def dict_to_nvlist(dict): '''Convert a dictionary into a CORBA namevalue list.''' result = [] for item in list(dict.keys()): result.append(SDOPackage.NameValue(item, omniORB.any.to_any(dict[item]))) return result	[ "def", "dict_to_nvlist", "(", "dict", ")", ":", "result", "=", "[", "]", "for", "item", "in", "list", "(", "dict", ".", "keys", "(", ")", ")", ":", "result", ".", "append", "(", "SDOPackage", ".", "NameValue", "(", "item", ",", "omniORB", ".", "any...	39.333333	0.008299
def tcp_server(tcp_addr, settings): """Start up the tcp server, send the settings.""" family = socket.AF_INET6 if ":" in tcp_addr.ip else socket.AF_INET sock = socket.socket(family, socket.SOCK_STREAM, socket.IPPROTO_TCP) sock.bind(tcp_addr) sock.listen(1) logging.info("Waiting for connection on %s", tcp_ad...	[ "def", "tcp_server", "(", "tcp_addr", ",", "settings", ")", ":", "family", "=", "socket", ".", "AF_INET6", "if", "\":\"", "in", "tcp_addr", ".", "ip", "else", "socket", ".", "AF_INET", "sock", "=", "socket", ".", "socket", "(", "family", ",", "socket", ...	43.375	0.021157
def split_unescaped(char, string, include_empty_strings=False): ''' :param char: The character on which to split the string :type char: string :param string: The string to split :type string: string :returns: List of substrings of string :rtype: list of strings Splits string wheneve...	[ "def", "split_unescaped", "(", "char", ",", "string", ",", "include_empty_strings", "=", "False", ")", ":", "words", "=", "[", "]", "pos", "=", "len", "(", "string", ")", "lastpos", "=", "pos", "while", "pos", ">=", "0", ":", "pos", "=", "get_last_pos_...	31.148148	0.001153
def _elimination_trees(theta, decision_variables): """From Theta and the decision variables, determine the elimination order and the induced trees. """ # auxiliary variables are any variables that are not decision auxiliary_variables = set(n for n in theta.linear if n not in decision_variables) ...	[ "def", "_elimination_trees", "(", "theta", ",", "decision_variables", ")", ":", "# auxiliary variables are any variables that are not decision", "auxiliary_variables", "=", "set", "(", "n", "for", "n", "in", "theta", ".", "linear", "if", "n", "not", "in", "decision_va...	32.930233	0.002058
def unset_value(self, key): # type: (str) -> None """Unset a value in the configuration. """ self._ensure_have_load_only() if key not in self._config[self.load_only]: raise ConfigurationError("No such key - {}".format(key)) fname, parser = self._get_parser_t...	[ "def", "unset_value", "(", "self", ",", "key", ")", ":", "# type: (str) -> None", "self", ".", "_ensure_have_load_only", "(", ")", "if", "key", "not", "in", "self", ".", "_config", "[", "self", ".", "load_only", "]", ":", "raise", "ConfigurationError", "(", ...	33.710526	0.002276
def wrap_as_node(self, func): 'wrap a function as a node' name = self.get_name(func) @wraps(func) def wrapped(args, kwargs): 'wrapped version of func' message = self.get_message_from_call(args, **kwargs) self.logger.info('calling "%s" with %r', na...	[ "def", "wrap_as_node", "(", "self", ",", "func", ")", ":", "name", "=", "self", ".", "get_name", "(", "func", ")", "@", "wraps", "(", "func", ")", "def", "wrapped", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "'wrapped version of func'", "me...	38.4	0.001693
def add_to_typedef(typedef_curr, obo_line): """Add new fields to the current typedef.""" if obo_line[:4] == "id: ": assert not typedef_curr.item_id item_id = obo_line[4:] typedef_curr.item_id = item_id elif obo_line[:6] == "name: ": assert not typedef_curr.name typede...	[ "def", "add_to_typedef", "(", "typedef_curr", ",", "obo_line", ")", ":", "if", "obo_line", "[", ":", "4", "]", "==", "\"id: \"", ":", "assert", "not", "typedef_curr", ".", "item_id", "item_id", "=", "obo_line", "[", "4", ":", "]", "typedef_curr", ".", "i...	42.578947	0.001209
def _import_module(module_name, warn=True, prefix='_py_', ignore='_'): """Try import all public attributes from module into global namespace. Existing attributes with name clashes are renamed with prefix. Attributes starting with underscore are ignored by default. Return True on successful import. ...	[ "def", "_import_module", "(", "module_name", ",", "warn", "=", "True", ",", "prefix", "=", "'_py_'", ",", "ignore", "=", "'_'", ")", ":", "try", ":", "module", "=", "__import__", "(", "module_name", ")", "except", "ImportError", ":", "if", "warn", ":", ...	35	0.001112
def setMinimumPixmapSize(self, size): """ Sets the minimum pixmap size that will be displayed to the user for the dock widget. :param size \| <int> """ self._minimumPixmapSize = size position = self.position() self._position = None ...	[ "def", "setMinimumPixmapSize", "(", "self", ",", "size", ")", ":", "self", ".", "_minimumPixmapSize", "=", "size", "position", "=", "self", ".", "position", "(", ")", "self", ".", "_position", "=", "None", "self", ".", "setPosition", "(", "position", ")" ]	31.090909	0.008523
def set_dword_at_offset(self, offset, dword): """Set the double word value at the given file offset.""" return self.set_bytes_at_offset(offset, self.get_data_from_dword(dword))	[ "def", "set_dword_at_offset", "(", "self", ",", "offset", ",", "dword", ")", ":", "return", "self", ".", "set_bytes_at_offset", "(", "offset", ",", "self", ".", "get_data_from_dword", "(", "dword", ")", ")" ]	63.333333	0.015625
def collect(self, dataset_readers_list): """collect results Returns: a list of results """ ret = [ ] for i, collector in enumerate(self.components): report = ProgressReport(name='collecting results', done=(i + 1), total=len(self.components)) ...	[ "def", "collect", "(", "self", ",", "dataset_readers_list", ")", ":", "ret", "=", "[", "]", "for", "i", ",", "collector", "in", "enumerate", "(", "self", ".", "components", ")", ":", "report", "=", "ProgressReport", "(", "name", "=", "'collecting results'"...	35.625	0.010256
def createSynapses(self): """Add an exponentially decaying synapse """ synsoma = h.ExpSyn(self.soma(0.5)) synsoma.tau = 2 synsoma.e = 0 syndend = h.ExpSyn(self.dend(0.5)) syndend.tau = 2 syndend.e = 0 self.synlist.append(synsoma) # synlist is defined in Ce...	[ "def", "createSynapses", "(", "self", ")", ":", "synsoma", "=", "h", ".", "ExpSyn", "(", "self", ".", "soma", "(", "0.5", ")", ")", "synsoma", ".", "tau", "=", "2", "synsoma", ".", "e", "=", "0", "syndend", "=", "h", ".", "ExpSyn", "(", "self", ...	35	0.008357
def run_conditional_decorators(self, context): """Evaluate the step decorators to decide whether to run step or not. Use pypyr.dsl.Step.run_step if you intend on executing the step the same way pypyr does. Args: context: (pypyr.context.Context) The pypyr context. This arg w...	[ "def", "run_conditional_decorators", "(", "self", ",", "context", ")", ":", "logger", ".", "debug", "(", "\"starting\"", ")", "# The decorator attributes might contain formatting expressions that", "# change whether they evaluate True or False, thus apply formatting at", "# last poss...	41.27907	0.001101
def save_function_tuple(self, func): """ Pickles an actual func object. A func comprises: code, globals, defaults, closure, and dict. We extract and save these, injecting reducing functions at certain points to recreate the func object. Keep in mind that some of these pieces ...	[ "def", "save_function_tuple", "(", "self", ",", "func", ")", ":", "if", "is_tornado_coroutine", "(", "func", ")", ":", "self", ".", "save_reduce", "(", "_rebuild_tornado_coroutine", ",", "(", "func", ".", "__wrapped__", ",", ")", ",", "obj", "=", "func", "...	38.175439	0.001344
def get_parent_tag(mention): """Return the HTML tag of the Mention's parent. These may be tags such as 'p', 'h2', 'table', 'div', etc. If a candidate is passed in, only the tag of its first Mention is returned. :param mention: The Mention to evaluate :rtype: string """ span = _to_span(ment...	[ "def", "get_parent_tag", "(", "mention", ")", ":", "span", "=", "_to_span", "(", "mention", ")", "i", "=", "_get_node", "(", "span", ".", "sentence", ")", "return", "str", "(", "i", ".", "getparent", "(", ")", ".", "tag", ")", "if", "i", ".", "getp...	34.916667	0.002326
def constrain_centers(self): """ Constrain the centers of linked `EPSFStar` objects (i.e. the same physical star) to have the same sky coordinate. Only `EPSFStar` objects that have not been excluded during the ePSF build process will be used to constrain the centers. Th...	[ "def", "constrain_centers", "(", "self", ")", ":", "if", "len", "(", "self", ".", "_data", ")", "<", "2", ":", "# no linked stars", "return", "idx", "=", "np", ".", "logical_not", "(", "self", ".", "_excluded_from_fit", ")", ".", "nonzero", "(", ")", "...	37.102041	0.001072
def _get_type(points, soma_class): '''get the type of the soma Args: points: Soma points soma_class(str): one of 'contour' or 'cylinder' to specify the type ''' assert soma_class in (SOMA_CONTOUR, SOMA_CYLINDER) npoints = len(points) if soma_class == SOMA_CONTOUR: retur...	[ "def", "_get_type", "(", "points", ",", "soma_class", ")", ":", "assert", "soma_class", "in", "(", "SOMA_CONTOUR", ",", "SOMA_CYLINDER", ")", "npoints", "=", "len", "(", "points", ")", "if", "soma_class", "==", "SOMA_CONTOUR", ":", "return", "{", "0", ":",...	34.366667	0.000943
def restore_catalog_to_ckan(catalog, origin_portal_url, destination_portal_url, apikey, download_strategy=None, generate_new_access_url=None): """Restaura los datasets de un catálogo original al portal pasado por parámetro. Si hay temas presentes en el ...	[ "def", "restore_catalog_to_ckan", "(", "catalog", ",", "origin_portal_url", ",", "destination_portal_url", ",", "apikey", ",", "download_strategy", "=", "None", ",", "generate_new_access_url", "=", "None", ")", ":", "catalog", "[", "'homepage'", "]", "=", "catalog",...	45.218182	0.000394
def howPlotArgs(goodFormat): '''plots using argparse if can, if not uses howPlotask() Arguments: goodFormat {dict} -- module : [results for module] ''' if args.exportplots is not None: exportPlotsPath = pathlib.Path(args.exportplots) if args.showplots: plotter(expor...	[ "def", "howPlotArgs", "(", "goodFormat", ")", ":", "if", "args", ".", "exportplots", "is", "not", "None", ":", "exportPlotsPath", "=", "pathlib", ".", "Path", "(", "args", ".", "exportplots", ")", "if", "args", ".", "showplots", ":", "plotter", "(", "exp...	29.941176	0.001905

def is_tone(char, strict=True): """ Check whether the character is a tone or word accent symbol. In strict mode return True only for the symbols listed in the last group of the chart. If strict=False, also accept symbols that belong to the Modifier Tone Letters Unicode block [1]. [1]: http://www.unicode.org/char...

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def _listen(self): """Listen for messages passed from parent This method distributes messages received via stdin to their corresponding channel. Based on the format of the incoming message, the message is forwarded to its corresponding channel to be processed by its correspondin...

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38.534884

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def sum(context, key, value, multiplier=1): """ Adds the given value to the total value currently held in ``key``. Use the multiplier if you want to turn a positive value into a negative and actually substract from the current total sum. Usage:: {% sum "MY_TOTAL" 42 -1 %} {{ MY_TO...

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def date_line_to_text(self, date_line): """ Return the textual representation of the given :class:`~taxi.timesheet.lines.DateLine` instance. The date format is set by the `date_format` parameter given when instanciating the parser instance. """ # Changing the date in a dateline i...

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def view_graph(graph_str, parent=None, prune_to=None): """View a graph.""" from rezgui.dialogs.ImageViewerDialog import ImageViewerDialog from rez.config import config # check for already written tempfile h = hash((graph_str, prune_to)) filepath = graph_file_lookup.get(h) if filepath and no...

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32.04

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def Stat(self, device_filename): """Get a file's stat() information.""" connection = self.protocol_handler.Open(self._handle, destination=b'sync:') mode, size, mtime = self.filesync_handler.Stat( connection, device_filename) connection.Close() return mode, size, mtime

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44.857143

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def persist(name, value, config=None): ''' Assign and persist a simple sysctl parameter for this minion. If ``config`` is not specified, a sensible default will be chosen using :mod:`sysctl.default_config <salt.modules.linux_sysctl.default_config>`. CLI Example: .. code-block:: bash s...

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36.444444

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def normalize_parameters(params): """ Normalize parameters """ params = params or {} normalized_parameters = OrderedDict() def get_value_like_as_php(val): """ Prepare value for quote """ try: base = basestring except NameError: ...

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def set(self, value): """ Sets the value of the object :param value: A unicode string containing an IPv4 address, IPv4 address with CIDR, an IPv6 address or IPv6 address with CIDR """ if not isinstance(value, str_cls): raise TypeError(unwrap(...

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def _send_broker_unaware_request(self, payloads, encoder_fn, decoder_fn): """ Attempt to send a broker-agnostic request to one of the available brokers. Keep trying until you succeed. """ hosts = set() for broker in self.brokers.values(): host, port, afi = get...

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34.444444

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def get_dump_names(self, names, dumps=None): """ Find and return all dump names required (by dependancies) for a given dump names list Beware, the returned name list does not respect order, you should only use it when walking throught the "original" dict builded by OrderedDict ...

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36.823529

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def get_or_guess_labels(self, x, kwargs): """ Get the label to use in generating an adversarial example for x. The kwargs are fed directly from the kwargs of the attack. If 'y' is in kwargs, then assume it's an untargeted attack and use that as the label. If 'y_target' is in kwargs and is not no...

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40.357143

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def format_as_html(explanation, # type: Explanation include_styles=True, # type: bool force_weights=True, # type: bool show=fields.ALL, preserve_density=None, # type: Optional[bool] highlight_spaces=None, # type: Optiona...

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48.536585

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def _add_non_batch(self, TX_nodes, PmtInf_nodes): """ Method to add a transaction as non batch, will fold the transaction together with the payment info node and append to the main xml. """ PmtInf_nodes['PmtInfNode'].append(PmtInf_nodes['PmtInfIdNode']) PmtInf_nodes['PmtI...

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52.592593

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def as_xml(self,parent): """ Create XML representation of `self`. :Parameters: - `parent`: the element to which the created node should be linked to. :Types: - `parent`: `libxml2.xmlNode` :return: an XML node. :returntype: `libxml2.xmlNode` ...

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def parse_headers(self, req: Request, name: str, field: Field) -> typing.Any: """Pull a value from the header data.""" return core.get_value(req.headers, name, field)

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60

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def debug_text_simple(self, text: str): """ Draws a text in the top left corner of the screen (up to a max of 6 messages it seems). Don't forget to add 'await self._client.send_debug'. """ self._debug_texts.append(self.to_debug_message(text))

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85.333333

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def get_read_buffers(self, size): """Get buffer(s) from which we can read data. When done reading, use :meth:`advance_read_index` to make the memory available for writing again. :param size: The number of elements desired. :type size: int :returns: * The nu...

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38.56

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def total_size(obj): """Returns the approximate total memory footprint an object.""" seen = set() def sizeof(current_obj): try: return _sizeof(current_obj) except Exception: # pylint: disable=broad-except # Not sure what just happened, but let's assume it's a reference. return struct.ca...

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37.466667

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def RetryOnUnavailable(func): """Function decorator to retry on a service unavailable exception.""" @functools.wraps(func) def Wrapper(*args, **kwargs): while True: try: response = func(*args, **kwargs) except (httpclient.HTTPException, socket.error, urlerror.URLError) as e: time....

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30.545455

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def _execute_callback(self, status, message, job, res, err, stacktrace): """Execute the callback. :param status: Job status. Possible values are "invalid" (job could not be deserialized or was malformed), "failure" (job raised an error), "timeout" (job timed out), or "success" (...

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47.384615

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def without(seq1, seq2): r"""Return a list with all elements in `seq2` removed from `seq1`, order preserved. Examples: >>> without([1,2,3,1,2], [1]) [2, 3, 2] """ if isSet(seq2): d2 = seq2 else: d2 = set(seq2) return [elt for elt in seq1 if elt not in d2]

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def add_arguments(self, parser): """Adds the arguments for the emulator command. Args: self (EmulatorCommand): the ``EmulatorCommand`` instance parser (argparse.ArgumentParser): parser to add the commands to Returns: ``None`` """ group = parser.add...

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41.8

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def _validate(self): """ The purpose of this method is to verify that the user has set sensible values for the training program before rendering. The user will still be able to render, but error messages will be printed. This method: * Validates that the average ...

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49.156863

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def _init_sys_auto_lookup(self): """Return a list of tuples of available init systems on the current machine. Note that in some situations (Ubuntu 14.04 for instance) more than one init system can be found. """ # TODO: Instead, check for executables for systemd and upsta...

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48.55

0.00202

def set_status(self, value): """ Set the status of the motor to the specified value if not already set. """ if not self._status == value: old = self._status self._status = value logger.info("{} changing status from {} to {}".format(self, old.name, valu...

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40.444444

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def get(self, orig_key): """Get cache entry for key, or return None.""" resp = requests.Response() key = self._clean_key(orig_key) path = os.path.join(self.cache_dir, key) try: with open(path, 'rb') as f: # read lines one at a time wh...

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42.444444

0.002047

def store(self, key, pk, value): """Store the value/pk in the sorted set index For the parameters, see BaseRangeIndex.store We simple store the pk as a member of the sorted set with the value being the score """ self.connection.zadd(key, value, pk)

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31.444444

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def from_xarray(da, crs=None, apply_transform=False, nan_nodata=False, **kwargs): """ Returns an RGB or Image element given an xarray DataArray loaded using xr.open_rasterio. If a crs attribute is present on the loaded data it will attempt to decode it into a cartopy projection otherwise it wil...

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33.159091

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def post_document(self, data): """ Create and analyze a new document data -- A Dictionary representing the new document """ data.update({ 'client' : CLIENT }) return self._call('POST', self._generate_url_path('documents'), data)

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def start(self): """ Start animation thread. """ self.thread = threading.Thread(target=self._animate) self.thread.start() return

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def _request(self, req_and_resp, **kwargs): """ Take a request_and_response object from pyswagger.App and check auth, token, headers, prepare the actual request and fill the response Note on performance : if you need more performance (because you are using this in a batch)...

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def node(self, parent=None, tag='g', attrib=None, **extras): """Make a new svg node""" if parent is None: parent = self.root attrib = attrib or {} attrib.update(extras) def in_attrib_and_number(key): return key in attrib and isinstance(attrib[key], Number...

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def predict_variant_effect_on_transcript(variant, transcript): """Return the transcript effect (such as FrameShift) that results from applying this genomic variant to a particular transcript. Parameters ---------- transcript : Transcript Transcript we're going to ap...

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async def print_what_is_playing(loop): """Connect to device and print what is playing.""" details = conf.AppleTV(ADDRESS, NAME) details.add_service(conf.DmapService(HSGID)) print('Connecting to {}'.format(details.address)) atv = pyatv.connect_to_apple_tv(details, loop) try: print((awai...

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def generate_fileattr_metadata(local_path, metadata): # type: (blobxfer.models.upload.LocalPath, dict) -> dict """Generate file attribute metadata dict :param blobxfer.models.upload.LocalPath local_path: local path :param dict metadata: existing metadata dict :rtype: dict :return: merged metadat...

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def is_docstring(tokens, previous_logical): """Return found docstring 'A docstring is a string literal that occurs as the first statement in a module, function, class,' http://www.python.org/dev/peps/pep-0257/#what-is-a-docstring """ for token_type, text, start, _, _ in tokens: if token...

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def _unpack_msg(self, *msg): """ Convert all message elements to string """ l = [] for m in msg: l.append(str(m)) return " ".join(l)

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def write(self, chunk: Union[str, bytes, dict]) -> None: """Writes the given chunk to the output buffer. To write the output to the network, use the `flush()` method below. If the given chunk is a dictionary, we write it as JSON and set the Content-Type of the response to be ``applicat...

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def DateTimeField(formatter=types.DEFAULT_DATETIME_FORMAT, default=NOTHING, required=True, repr=True, cmp=True, key=None): """ Create new datetime field on a model. :param formatter: datetime formatter string (default: "ISO_FORMAT") :param default: any datetime or string that can be c...

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def createStyle(self, body, verbose=None): """ Creates a new Visual Style using the message body. Returns the title of the new Visual Style. If the title of the Visual Style already existed in the session, a new one will be automatically generated and returned. :param body: The...

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def obfn_reg(self): r"""Compute regularisation term, :math:`\| x \|_1`, and contribution to objective function. """ l1 = np.sum(mp_wl1*np.abs(self.obfn_gvar())) return (self.lmbda*l1, l1)

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37

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def scaled_pressure2_encode(self, time_boot_ms, press_abs, press_diff, temperature): ''' Barometer readings for 2nd barometer time_boot_ms : Timestamp (milliseconds since system boot) (uint32_t) press_abs : Absolute pressure (...

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def tob32(val): """Return provided 32 bit value as a string of four bytes.""" ret = bytearray(4) ret[0] = (val>>24)&M8 ret[1] = (val>>16)&M8 ret[2] = (val>>8)&M8 ret[3] = val&M8 return ret

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def html_table_from_query(rows: Iterable[Iterable[Optional[str]]], descriptions: Iterable[Optional[str]]) -> str: """ Converts rows from an SQL query result to an HTML table. Suitable for processing output from the defunct function ``rnc_db.fetchall_with_fieldnames(sql)``. ...

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def squared_error(y, y_pred): """Calculates the sum of the squared differences between target and prediction. Parameters: ----------- y : vector, shape (n_samples,) The target values. y_pred : vector, shape (n_samples,) The predicted values. Returns: -------- error...

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def eigenvalues(T, k=None, reversible=False, mu=None): r"""Compute eigenvalues of given transition matrix. Parameters ---------- T : (d, d) ndarray Transition matrix (stochastic matrix) k : int or tuple of ints, optional Compute the first k eigenvalues of T reversible : bool, op...

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def stage_pywbem_args(self, method, **kwargs): """ Log request method and all args. Normally called before the cmd is executed to record request parameters. This method does not support the summary detail_level because that seems to add little info to the log that is not ...

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def weather_at_places(self, pattern, searchtype, limit=None): """ Queries the OWM Weather API for the currently observed weather in all the locations whose name is matching the specified text search parameters. A twofold search can be issued: *'accurate'* (exact matching) and *'l...

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def hover(self): """ Hovers the element """ def do_hover(): """ Perform hover """ ActionChains(self.driver_wrapper.driver).move_to_element(self.element).perform() return self.execute_and_handle_webelement_exceptions(do_hover, 'hover...

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def new_mountpoint(self, name): """Create a new mountpoint""" url = posixpath.join(self.path, name) r = self._jfs.post(url, extra_headers={'content-type': 'application/x-www-form-urlencoded'}) return r

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def have_same_structure(d1, d2): """ Given two dictionaries (possibly with other nested dictionaries as values), this function checks whether they have the same key structure. >>> from sem import DatabaseManager >>> d1 = {'a': 1, 'b': 2} >>> d2 = {'a': [], 'b': 3} ...

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def _ord2ymd(n): "ordinal -> (year, month, day), considering 01-Jan-0001 as day 1." # n is a 1-based index, starting at 1-Jan-1. The pattern of leap years # repeats exactly every 400 years. The basic strategy is to find the # closest 400-year boundary at or before n, then work with the offset # f...

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def is_rigid(matrix): """ Check to make sure a homogeonous transformation matrix is a rigid body transform. Parameters ----------- matrix: possibly a transformation matrix Returns ----------- check: bool, True if matrix is a valid (4,4) rigid body transform. """ matrix = n...

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def get_os_codename_install_source(src): '''Derive OpenStack release codename from a given installation source.''' ubuntu_rel = lsb_release()['DISTRIB_CODENAME'] rel = '' if src is None: return rel if src in ['distro', 'distro-proposed', 'proposed']: try: rel = UBUNTU_OPE...

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def join(self, glue=" "): """ Javascript's join implementation """ j = glue.join([str(x) for x in self.obj]) return self._wrap(j)

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def handle_input(self, input_hdr): """ This method tries to ensure that the input data has the correct dimensions. INPUTS: input_hdr (no default) Header from which data shape is to be extracted. """ input_slice = input_hdr['NAXIS']*[0] for i in range(input...

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def _auth(profile=None): ''' Set up neutron credentials ''' credentials = __salt__['config.option'](profile) kwargs = { 'username': credentials['keystone.user'], 'password': credentials['keystone.password'], 'tenant_name': credentials['keystone.tenant'], 'auth_url': c...

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def LL(n): """constructs the LL context""" if (n<=0):return Context('0') else: LL1=LL(n-1) r1 = C1(3**(n-1),2**(n-1)) - LL1 - LL1 r2 = LL1 - LL1 - LL1 return r1 + r2

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def decrypt(receiver_prvhex: str, msg: bytes) -> bytes: """ Decrypt with eth private key Parameters ---------- receiver_pubhex: str Receiver's ethereum private key hex string msg: bytes Data to decrypt Returns ------- bytes Plain text """ pubkey = ms...

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def reset (self): """ Initialize FTP url data. """ super(FtpUrl, self).reset() # list of files for recursion self.files = [] # last part of URL filename self.filename = None self.filename_encoding = 'iso-8859-1'

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def get_all(jail=None): ''' Return a list of all available services .. versionchanged:: 2016.3.4 jail: optional jid or jail name CLI Example: .. code-block:: bash salt '*' service.get_all ''' ret = [] service = _cmd(jail) for srv in __salt__['cmd.run']('{0} -l'.forma...

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def computePCsPlink(plink_path,k,out_dir,bfile,ffile): """ computing the covariance matrix via plink """ print("Using plink to compute principal components") cmd = '%s --bfile %s --pca %d '%(plink_path,bfile,k) cmd+= '--out %s'%(os.path.join(out_dir,'plink')) subprocess.call(cmd,shell=True) ...

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def detect(self, G): """Detect a single core-periphery pair using the Borgatti-Everett algorithm. Parameters ---------- G : NetworkX graph object Examples -------- >>> import networkx as nx >>> import cpalgorithm as cpa >>> G = nx.karate_club_graph() # load the karate club network. >>> be = c...

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def display_event(div, attributes=[]): """ Function to build a suitable CustomJS to display the current event in the div model. """ style = 'float: left; clear: left; font-size: 10pt' return CustomJS(args=dict(div=div), code=""" var attrs = %s; var args = []; for (var i =...

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def add_server(self,address,port=default_port,password=None,speed=None,valid_times=None,invalid_times=None): ''' :address: remote address of server, or special string ``local`` to run the command locally :valid_times: times when this server is availabl...

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def get(self, jid=None): # pylint: disable=W0221 ''' A convenience URL for getting lists of previously run jobs or getting the return from a single job .. http:get:: /jobs/(jid) List jobs or show a single job from the job cache. :status 200: |200| ...

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24

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def train_transform(self, images, surpress_mapping_check = False): r""" See also -------- train, transform """ ret = self.train(images) outputs = [self.transform(i, surpress_mapping_check) for i in images] return ret, outputs

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def queriessam2dalignbed(cfg): """ Processes SAM file to get the genomic coordinates in BED format step#2 :param cfg: configuration dict """ datatmpd=cfg['datatmpd'] alignmentbedp=cfg['alignmentbedp'] dalignbedp=cfg['dalignbedp'] logging.info(basename(dalignbedp)) if not exists(...

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def is_prune(self): """ Return True, if `git fetch --prune` is allowed. Because of possible incompatibilities, this requires special treatment. """ required_version = "1.6.6" config_value = self.settings['fetch.prune'] if self.git.is_version_mi...

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def __we_c(cls, calib, tc, temp, we_v, ae_v): """ Compute weC from sensor temperature compensation of weV, aeV """ we_t = we_v - (calib.we_elc_mv / 1000.0) # remove electronic we zero ae_t = ae_v - (calib.ae_elc_mv / 1000.0) # remove electronic ae zero we_c...

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38.75

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def _parse_args(func, variables, annotations=None): """Return a list of arguments with the variable it reads. NOTE: Multiple arguments may read the same variable. """ arg_read_var = [] for arg_name, anno in (annotations or func.__annotations__).items(): if arg_name == 'return': ...

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37.923077

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def get_response(self, url, timeout=None): """Return http request response. """ if not timeout: timeout = self.default_timeout if self.default_sleeptime: time.sleep(self.default_sleeptime) try: return self.auth.get(url, headers=self.default_h...

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def popleft(self): """Removes and returns the oldest read pulse.""" self._mq.send("^", True, type=1) message = self._wait_receive_msg() reply = int(message[0].decode('utf-8')) #print(reply) if reply == -1: raise IndexError("pop from empty list") return...

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def _sort_layers(self): """Sort the layers by depth.""" self._layers = OrderedDict(sorted(self._layers.items(), key=lambda t: t[0]))

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def is_ambiguous(self, dt, idx=None): """ Whether or not the "wall time" of a given datetime is ambiguous in this zone. :param dt: A :py:class:`datetime.datetime`, naive or time zone aware. :return: Returns ``True`` if ambiguous, ``False`` otherwise. ...

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def validatefeatures(self,features): """Returns features in validated form, or raises an Exception. Mostly for internal use""" validatedfeatures = [] for feature in features: if isinstance(feature, int) or isinstance(feature, float): validatedfeatures.append( str(feat...

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def average_neighbor_distance(points, num_neigh): """! @brief Returns average distance for establish links between specified number of nearest neighbors. @param[in] points (list): Input data, list of points where each point represented by list. @param[in] num_neigh (uint): Number of neighbors ...

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def convert_to_shape(x): """Converts input to a Shape. Args: x: Shape, str, or None. Returns: Shape or None. Raises: ValueError: If x cannot be converted to a Shape. """ if x is None: return None if isinstance(x, Shape): return x if isinstance(x, str): x = _parse_string_to_lis...

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def image_update(id=None, name=None, profile=None, **kwargs): # pylint: disable=C0103 ''' Update properties of given image. Known to work for: - min_ram (in MB) - protected (bool) - visibility ('public' or 'private') CLI Example: .. code-block:: bash salt '*' glance.image_upd...

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def notify_barriers(self, slot_key, cursor, use_barrier_indexes, max_to_notify=_MAX_BARRIERS_TO_NOTIFY): """Searches for barriers affected by a slot and triggers completed ones. Args: slot_key: db.Key or stringified k...

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def dict_to_nvlist(dict): '''Convert a dictionary into a CORBA namevalue list.''' result = [] for item in list(dict.keys()): result.append(SDOPackage.NameValue(item, omniORB.any.to_any(dict[item]))) return result

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def tcp_server(tcp_addr, settings): """Start up the tcp server, send the settings.""" family = socket.AF_INET6 if ":" in tcp_addr.ip else socket.AF_INET sock = socket.socket(family, socket.SOCK_STREAM, socket.IPPROTO_TCP) sock.bind(tcp_addr) sock.listen(1) logging.info("Waiting for connection on %s", tcp_ad...

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def split_unescaped(char, string, include_empty_strings=False): ''' :param char: The character on which to split the string :type char: string :param string: The string to split :type string: string :returns: List of substrings of *string* :rtype: list of strings Splits *string* wheneve...

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def _elimination_trees(theta, decision_variables): """From Theta and the decision variables, determine the elimination order and the induced trees. """ # auxiliary variables are any variables that are not decision auxiliary_variables = set(n for n in theta.linear if n not in decision_variables) ...

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def unset_value(self, key): # type: (str) -> None """Unset a value in the configuration. """ self._ensure_have_load_only() if key not in self._config[self.load_only]: raise ConfigurationError("No such key - {}".format(key)) fname, parser = self._get_parser_t...

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def wrap_as_node(self, func): 'wrap a function as a node' name = self.get_name(func) @wraps(func) def wrapped(*args, **kwargs): 'wrapped version of func' message = self.get_message_from_call(*args, **kwargs) self.logger.info('calling "%s" with %r', na...

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def add_to_typedef(typedef_curr, obo_line): """Add new fields to the current typedef.""" if obo_line[:4] == "id: ": assert not typedef_curr.item_id item_id = obo_line[4:] typedef_curr.item_id = item_id elif obo_line[:6] == "name: ": assert not typedef_curr.name typede...

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def _import_module(module_name, warn=True, prefix='_py_', ignore='_'): """Try import all public attributes from module into global namespace. Existing attributes with name clashes are renamed with prefix. Attributes starting with underscore are ignored by default. Return True on successful import. ...

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def setMinimumPixmapSize(self, size): """ Sets the minimum pixmap size that will be displayed to the user for the dock widget. :param size | <int> """ self._minimumPixmapSize = size position = self.position() self._position = None ...

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def set_dword_at_offset(self, offset, dword): """Set the double word value at the given file offset.""" return self.set_bytes_at_offset(offset, self.get_data_from_dword(dword))

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def collect(self, dataset_readers_list): """collect results Returns: a list of results """ ret = [ ] for i, collector in enumerate(self.components): report = ProgressReport(name='collecting results', done=(i + 1), total=len(self.components)) ...

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def createSynapses(self): """Add an exponentially decaying synapse """ synsoma = h.ExpSyn(self.soma(0.5)) synsoma.tau = 2 synsoma.e = 0 syndend = h.ExpSyn(self.dend(0.5)) syndend.tau = 2 syndend.e = 0 self.synlist.append(synsoma) # synlist is defined in Ce...

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def run_conditional_decorators(self, context): """Evaluate the step decorators to decide whether to run step or not. Use pypyr.dsl.Step.run_step if you intend on executing the step the same way pypyr does. Args: context: (pypyr.context.Context) The pypyr context. This arg w...

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def save_function_tuple(self, func): """ Pickles an actual func object. A func comprises: code, globals, defaults, closure, and dict. We extract and save these, injecting reducing functions at certain points to recreate the func object. Keep in mind that some of these pieces ...

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def get_parent_tag(mention): """Return the HTML tag of the Mention's parent. These may be tags such as 'p', 'h2', 'table', 'div', etc. If a candidate is passed in, only the tag of its first Mention is returned. :param mention: The Mention to evaluate :rtype: string """ span = _to_span(ment...

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def constrain_centers(self): """ Constrain the centers of linked `EPSFStar` objects (i.e. the same physical star) to have the same sky coordinate. Only `EPSFStar` objects that have not been excluded during the ePSF build process will be used to constrain the centers. Th...

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def _get_type(points, soma_class): '''get the type of the soma Args: points: Soma points soma_class(str): one of 'contour' or 'cylinder' to specify the type ''' assert soma_class in (SOMA_CONTOUR, SOMA_CYLINDER) npoints = len(points) if soma_class == SOMA_CONTOUR: retur...

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def restore_catalog_to_ckan(catalog, origin_portal_url, destination_portal_url, apikey, download_strategy=None, generate_new_access_url=None): """Restaura los datasets de un catálogo original al portal pasado por parámetro. Si hay temas presentes en el ...

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def howPlotArgs(goodFormat): '''plots using argparse if can, if not uses howPlotask() Arguments: goodFormat {dict} -- module : [results for module] ''' if args.exportplots is not None: exportPlotsPath = pathlib.Path(args.exportplots) if args.showplots: plotter(expor...

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