kejian/codesearchnet-python-rebalanced · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def bschoi(value, ndim, array, order): """ Do a binary search for a given value within an integer array, accompanied by an order vector. Return the index of the matching array entry, or -1 if the key value is not found. http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/bschoi_c.html :pa...	[ "def", "bschoi", "(", "value", ",", "ndim", ",", "array", ",", "order", ")", ":", "value", "=", "ctypes", ".", "c_int", "(", "value", ")", "ndim", "=", "ctypes", ".", "c_int", "(", "ndim", ")", "array", "=", "stypes", ".", "toIntVector", "(", "arra...	32.958333	0.001229
def dvdot(s1, s2): """ Compute the derivative of the dot product of two double precision position vectors. http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/dvdot_c.html :param s1: First state vector in the dot product. :type s1: 6-Element Array of floats :param s2: Second state vect...	[ "def", "dvdot", "(", "s1", ",", "s2", ")", ":", "assert", "len", "(", "s1", ")", "is", "6", "and", "len", "(", "s2", ")", "is", "6", "s1", "=", "stypes", ".", "toDoubleVector", "(", "s1", ")", "s2", "=", "stypes", ".", "toDoubleVector", "(", "s...	32.555556	0.001658
def FromPublicKey(cls, public_key): """An alternate constructor which generates a new client id.""" # Our CN will be the first 64 bits of the hash of the public key # in MPI format - the length of the key in 4 bytes + the key # prefixed with a 0. This weird format is an artifact from the way # M2Cry...	[ "def", "FromPublicKey", "(", "cls", ",", "public_key", ")", ":", "# Our CN will be the first 64 bits of the hash of the public key", "# in MPI format - the length of the key in 4 bytes + the key", "# prefixed with a 0. This weird format is an artifact from the way", "# M2Crypto handled this, w...	47.769231	0.00158
def _delete_subtree(self, nodes): """ Delete subtree private method. No argument validation and usage of getter/setter private methods is used for speed """ nodes = nodes if isinstance(nodes, list) else [nodes] iobj = [ (self._db[node]["parent"], node...	[ "def", "_delete_subtree", "(", "self", ",", "nodes", ")", ":", "nodes", "=", "nodes", "if", "isinstance", "(", "nodes", ",", "list", ")", "else", "[", "nodes", "]", "iobj", "=", "[", "(", "self", ".", "_db", "[", "node", "]", "[", "\"parent\"", "]"...	34.666667	0.002339
def finalize(self): """ Called at clean up, when the editor is closed. Can be used to disconnect signals. This is often called after the client (e.g. the inspector) is updated. If you want to take action before the update, override prepareCommit instead. Be sure to call the f...	[ "def", "finalize", "(", "self", ")", ":", "for", "subEditor", "in", "self", ".", "_subEditors", ":", "self", ".", "removeSubEditor", "(", "subEditor", ")", "self", ".", "cti", ".", "model", ".", "sigItemChanged", ".", "disconnect", "(", "self", ".", "mod...	53.692308	0.008451
def send(self, content): """Sends a JavaScript command to PS :param content: Script content :type content: str :yields: :class:`.Message` """ LOGGER.debug('Sending: %s', content) all_bytes = struct.pack('>i', Connection.PROTOCOL_VERSION) all_bytes += stru...	[ "def", "send", "(", "self", ",", "content", ")", ":", "LOGGER", ".", "debug", "(", "'Sending: %s'", ",", "content", ")", "all_bytes", "=", "struct", ".", "pack", "(", "'>i'", ",", "Connection", ".", "PROTOCOL_VERSION", ")", "all_bytes", "+=", "struct", "...	31.7	0.002041
def get_version(): "Returns a PEP 386-compliant version number from VERSION." assert len(VERSION) == 5 assert VERSION[3] in ('alpha', 'beta', 'rc', 'final') # Now build the two parts of the version number: # main = X.Y[.Z] # sub = .devN - for pre-alpha releases # \| {a\|b\|c}N - for alpha,...	[ "def", "get_version", "(", ")", ":", "assert", "len", "(", "VERSION", ")", "==", "5", "assert", "VERSION", "[", "3", "]", "in", "(", "'alpha'", ",", "'beta'", ",", "'rc'", ",", "'final'", ")", "# Now build the two parts of the version number:", "# main = X.Y[....	31.473684	0.001623
def replace(obj, **changes): """Return a new object replacing specified fields with new values. This is especially useful for frozen classes. Example usage: @dataclass(frozen=True) class C: x: int y: int c = C(1, 2) c1 = replace(c, x=3) assert c1.x == 3 and ...	[ "def", "replace", "(", "obj", ",", "", "", "changes", ")", ":", "# We're going to mutate 'changes', but that's okay because it's a", "# new dict, even if called with 'replace(obj, **my_changes)'.", "if", "not", "_is_dataclass_instance", "(", "obj", ")", ":", "raise", "TypeE...	34.857143	0.000664
def cyclone( adata, marker_pairs, gene_names, sample_names, iterations=1000, min_iter=100, min_pairs=50): """Assigns scores and predicted class to observations [Scialdone15]_ [Fechtner18]_. Calculates scores for each observation and each phase and assigns...	[ "def", "cyclone", "(", "adata", ",", "marker_pairs", ",", "gene_names", ",", "sample_names", ",", "iterations", "=", "1000", ",", "min_iter", "=", "100", ",", "min_pairs", "=", "50", ")", ":", "try", ":", "from", "pypairs", "import", "__version__", "as", ...	34.662162	0.00834
def _onPrevBookmark(self): """Previous Bookmark action triggered. Move cursor """ for block in qutepart.iterateBlocksBackFrom(self._qpart.textCursor().block().previous()): if self.isBlockMarked(block): self._qpart.setTextCursor(QTextCursor(block)) retu...	[ "def", "_onPrevBookmark", "(", "self", ")", ":", "for", "block", "in", "qutepart", ".", "iterateBlocksBackFrom", "(", "self", ".", "_qpart", ".", "textCursor", "(", ")", ".", "block", "(", ")", ".", "previous", "(", ")", ")", ":", "if", "self", ".", ...	45.142857	0.009317
def _search_url(search_term:str, size:str='>400*300', format:str='jpg') -> str: "Return a Google Images Search URL for a given search term." return ('https://www.google.com/search?q=' + quote(search_term) + '&espv=2&biw=1366&bih=667&site=webhp&source=lnms&tbm=isch' + _url_params(size, fo...	[ "def", "_search_url", "(", "search_term", ":", "str", ",", "size", ":", "str", "=", "'>400*300'", ",", "format", ":", "str", "=", "'jpg'", ")", "->", "str", ":", "return", "(", "'https://www.google.com/search?q='", "+", "quote", "(", "search_term", ")", "+...	74.2	0.024
def get_from_relations(self, query,aliases): ''' Returns list of the names of all positive relations in the query ''' return [aliases[rel.get_name()] for rel in query.get_relations() if not rel.is_negated()]	[ "def", "get_from_relations", "(", "self", ",", "query", ",", "aliases", ")", ":", "return", "[", "aliases", "[", "rel", ".", "get_name", "(", ")", "]", "for", "rel", "in", "query", ".", "get_relations", "(", ")", "if", "not", "rel", ".", "is_negated", ...	47	0.016736
def best_item_from_list(item,options,fuzzy=90,fname_match=True,fuzzy_fragment=None,guess=False): '''Returns just the best item, or ``None``''' match = best_match_from_list(item,options,fuzzy,fname_match,fuzzy_fragment,guess) if match: return match[0] return None	[ "def", "best_item_from_list", "(", "item", ",", "options", ",", "fuzzy", "=", "90", ",", "fname_match", "=", "True", ",", "fuzzy_fragment", "=", "None", ",", "guess", "=", "False", ")", ":", "match", "=", "best_match_from_list", "(", "item", ",", "options"...	46.833333	0.045455
def getModelData(self,name): """ Gets the model data associated with the given name. If it was loaded, a cached copy will be returned. It it was not loaded, it will be loaded and cached. """ if name in self.modelcache: return self.modelcache[name] ...	[ "def", "getModelData", "(", "self", ",", "name", ")", ":", "if", "name", "in", "self", ".", "modelcache", ":", "return", "self", ".", "modelcache", "[", "name", "]", "return", "self", ".", "loadModelData", "(", "name", ")" ]	34.7	0.011236
def add(self, pattern, method=None, call=None, name=None): """Add a url pattern. Args: pattern (:obj:`str`): URL pattern to add. This is usually '/' separated path. Parts of the URL can be parameterised using curly braces. Examples: "/", "/pat...	[ "def", "add", "(", "self", ",", "pattern", ",", "method", "=", "None", ",", "call", "=", "None", ",", "name", "=", "None", ")", ":", "if", "not", "pattern", ".", "endswith", "(", "'/'", ")", ":", "pattern", "+=", "'/'", "parts", "=", "tuple", "("...	39.666667	0.001367
def default_table(self, layout, table_content, cols_width): """format a table""" cols_width = [size + 1 for size in cols_width] format_strings = " ".join(["%%-%ss"] * len(cols_width)) format_strings = format_strings % tuple(cols_width) format_strings = format_strings.split(" ") ...	[ "def", "default_table", "(", "self", ",", "layout", ",", "table_content", ",", "cols_width", ")", ":", "cols_width", "=", "[", "size", "+", "1", "for", "size", "in", "cols_width", "]", "format_strings", "=", "\" \"", ".", "join", "(", "[", "\"%%-%ss\"", ...	47.368421	0.002179
def find_goodness_of_fit_csv(observed_simulated_file, out_file=None): """ Finds the goodness of fit comparing observed and simulated flows In the file, the first column is the observed flows and the second column is the simulated flows. Example:: 33.5, 77.2 34.7, 73.0 Paramete...	[ "def", "find_goodness_of_fit_csv", "(", "observed_simulated_file", ",", "out_file", "=", "None", ")", ":", "observed_simulated_table", "=", "np", ".", "loadtxt", "(", "observed_simulated_file", ",", "ndmin", "=", "2", ",", "delimiter", "=", "\",\"", ",", "usecols"...	34.426471	0.000415
def remapScipy(im, coords): """ Remap an image using SciPy. See :func:`remap` for parameters. """ height, width = im.shape[0], im.shape[1] # switch to y,x order coords = coords[:,:,::-1] # make it (h, w, 3, 3) coords_channels = np.empty((height, width, 3, 3)) coords_channel = n...	[ "def", "remapScipy", "(", "im", ",", "coords", ")", ":", "height", ",", "width", "=", "im", ".", "shape", "[", "0", "]", ",", "im", ".", "shape", "[", "1", "]", "# switch to y,x order", "coords", "=", "coords", "[", ":", ",", ":", ",", ":", ":", ...	29.333333	0.02751
def clustered_sortind(x, k=10, scorefunc=None): """ Uses MiniBatch k-means clustering to cluster matrix into groups. Each cluster of rows is then sorted by `scorefunc` -- by default, the max peak height when all rows in a cluster are averaged, or cluster.mean(axis=0).max(). Returns the index t...	[ "def", "clustered_sortind", "(", "x", ",", "k", "=", "10", ",", "scorefunc", "=", "None", ")", ":", "try", ":", "from", "sklearn", ".", "cluster", "import", "MiniBatchKMeans", "except", "ImportError", ":", "raise", "ImportError", "(", "'please install scikits....	32.825397	0.000469
def scaled_dimensions(self, width=None, height=None): """ Return a (cx, cy) 2-tuple representing the native dimensions of this image scaled by applying the following rules to width and height. If both width and height are specified, the return value is (width, height)...	[ "def", "scaled_dimensions", "(", "self", ",", "width", "=", "None", ",", "height", "=", "None", ")", ":", "if", "width", "is", "None", "and", "height", "is", "None", ":", "return", "self", ".", "width", ",", "self", ".", "height", "if", "width", "is"...	48.346154	0.00156
def get_events(self): """Get event list from satellite :return: A copy of the events list :rtype: list """ res = copy.copy(self.events) del self.events[:] return res	[ "def", "get_events", "(", "self", ")", ":", "res", "=", "copy", ".", "copy", "(", "self", ".", "events", ")", "del", "self", ".", "events", "[", ":", "]", "return", "res" ]	23.777778	0.009009
def _bounds_from_array(arr, dim_name, bounds_name): """Get the bounds of an array given its center values. E.g. if lat-lon grid center lat/lon values are known, but not the bounds of each grid box. The algorithm assumes that the bounds are simply halfway between each pair of center values. """ ...	[ "def", "_bounds_from_array", "(", "arr", ",", "dim_name", ",", "bounds_name", ")", ":", "# TODO: don't assume needed dimension is in axis=0", "# TODO: refactor to get rid of repetitive code", "spacing", "=", "arr", ".", "diff", "(", "dim_name", ")", ".", "values", "lower"...	47.2	0.001038
def _query(queue_name=None, build_id=None, release_id=None, run_id=None, count=None): """Queries for work items based on their criteria. Args: queue_name: Optional queue name to restrict to. build_id: Optional build ID to restrict to. release_id: Optional release ID to restri...	[ "def", "_query", "(", "queue_name", "=", "None", ",", "build_id", "=", "None", ",", "release_id", "=", "None", ",", "run_id", "=", "None", ",", "count", "=", "None", ")", ":", "assert", "queue_name", "or", "build_id", "or", "release_id", "or", "run_id", ...	29.393939	0.000998
def get_bounds(self, R): """Calculate lower and upper bounds for centers and widths Parameters ---------- R : 2D array, with shape [n_voxel, n_dim] The coordinate matrix of fMRI data from one subject Returns ------- bounds : 2-tuple of array_like,...	[ "def", "get_bounds", "(", "self", ",", "R", ")", ":", "max_sigma", "=", "self", ".", "_get_max_sigma", "(", "R", ")", "final_lower", "=", "np", ".", "zeros", "(", "self", ".", "K", "*", "(", "self", ".", "n_dim", "+", "1", ")", ")", "final_lower", ...	32.774194	0.001912
def postprocess(x, n_bits_x=8): """Converts x from [-0.5, 0.5], to [0, 255]. Args: x: 3-D or 4-D Tensor normalized between [-0.5, 0.5] n_bits_x: Number of bits representing each pixel of the output. Defaults to 8, to default to 256 possible values. Returns: x: 3-D or 4-D Tensor represen...	[ "def", "postprocess", "(", "x", ",", "n_bits_x", "=", "8", ")", ":", "x", "=", "tf", ".", "where", "(", "tf", ".", "is_finite", "(", "x", ")", ",", "x", ",", "tf", ".", "ones_like", "(", "x", ")", ")", "x", "=", "tf", ".", "clip_by_value", "(...	34.533333	0.013158
def fetch_cluster_se(data, samfile, chrom, rstart, rend): """ Builds a single end cluster from the refmapped data. """ ## If SE then we enforce the minimum overlap distance to avoid the ## staircase syndrome of multiple reads overlapping just a little. overlap_buffer = data._hackersonly["min_SE...	[ "def", "fetch_cluster_se", "(", "data", ",", "samfile", ",", "chrom", ",", "rstart", ",", "rend", ")", ":", "## If SE then we enforce the minimum overlap distance to avoid the", "## staircase syndrome of multiple reads overlapping just a little.", "overlap_buffer", "=", "data", ...	35.979798	0.009016
def set_properties(obj, values): """ Recursively sets values of some (all) object and its subobjects properties. The object can be a user defined object, map or array. Property values correspondently are object properties, map key-pairs or array elements with their indexes. If ...	[ "def", "set_properties", "(", "obj", ",", "values", ")", ":", "if", "values", "==", "None", "or", "len", "(", "values", ")", "==", "0", ":", "return", "for", "(", "key", ",", "value", ")", "in", "values", ".", "items", "(", ")", ":", "RecursiveObje...	40.666667	0.009346
def discover(app, module_name=None): """ Automatically apply the permission logics written in the specified module. Examples -------- Assume if you have a ``perms.py`` in ``your_app`` as:: from permission.logics import AuthorPermissionLogic PERMISSION_LOGICS = ( ('y...	[ "def", "discover", "(", "app", ",", "module_name", "=", "None", ")", ":", "from", "permission", ".", "compat", "import", "import_module", "from", "permission", ".", "compat", "import", "get_model", "from", "permission", ".", "conf", "import", "settings", "from...	35.487179	0.000703
def namedb_delete_prepare( cur, primary_key, primary_key_value, table_name ): """ Prepare to delete a record, but make sure the fields in record correspond to actual columns. Return a DELETE FROM ... WHERE statement on success. Raise an Exception if not. DO NOT CALL THIS METHOD DIRETLY ...	[ "def", "namedb_delete_prepare", "(", "cur", ",", "primary_key", ",", "primary_key_value", ",", "table_name", ")", ":", "# primary key corresponds to a real column ", "namedb_assert_fields_match", "(", "cur", ",", "{", "primary_key", ":", "primary_key_value", "}", ",", "...	37.625	0.012966
def fmt_datetime(d, fmt='', local=True): """ format date with local support ``d``: datetime to format ``fmt``: format, default is '%Y-%m-%d %H-%M' ``local``: format as local time """ if not d: return '' if local: from django.templatetags.tz import localtime d = lo...	[ "def", "fmt_datetime", "(", "d", ",", "fmt", "=", "''", ",", "local", "=", "True", ")", ":", "if", "not", "d", ":", "return", "''", "if", "local", ":", "from", "django", ".", "templatetags", ".", "tz", "import", "localtime", "d", "=", "localtime", ...	26	0.002475
def plot_world_with_plotly(world, species_list=None, max_count=1000): """ Plot a World on IPython Notebook """ if isinstance(world, str): from .simulation import load_world world = load_world(world) if species_list is None: species_list = [sp.serial() for sp in world.list_sp...	[ "def", "plot_world_with_plotly", "(", "world", ",", "species_list", "=", "None", ",", "max_count", "=", "1000", ")", ":", "if", "isinstance", "(", "world", ",", "str", ")", ":", "from", ".", "simulation", "import", "load_world", "world", "=", "load_world", ...	29.446809	0.000699
def get_open_func(fn, return_fmt=False): """Get the opening function. Args: fn (str): the name of the file. return_fmt (bool): if the file format needs to be returned. Returns: tuple: either a tuple containing two elements: a boolean telling if the format is bgzip, and the ...	[ "def", "get_open_func", "(", "fn", ",", "return_fmt", "=", "False", ")", ":", "# The file might be compressed using bgzip", "bgzip", "=", "None", "with", "open", "(", "fn", ",", "\"rb\"", ")", "as", "i_file", ":", "bgzip", "=", "i_file", ".", "read", "(", ...	25.358974	0.000974
def create_asymmetric_key_pair(self, algorithm, length): """ Create an asymmetric key pair. Args: algorithm(CryptographicAlgorithm): An enumeration specifying the algorithm for which the created keys will be compliant. length(int): The length of the keys ...	[ "def", "create_asymmetric_key_pair", "(", "self", ",", "algorithm", ",", "length", ")", ":", "if", "algorithm", "not", "in", "self", ".", "_asymmetric_key_algorithms", ".", "keys", "(", ")", ":", "raise", "exceptions", ".", "InvalidField", "(", "\"The cryptograp...	42.540541	0.001242
def split_writable_text(encoder, text, encoding): """Splits off as many characters from the begnning of text as are writable with "encoding". Returns a 2-tuple (writable, rest). """ if not encoding: return None, text for idx, char in enumerate(text): if encoder.can_encode(encoding, ...	[ "def", "split_writable_text", "(", "encoder", ",", "text", ",", "encoding", ")", ":", "if", "not", "encoding", ":", "return", "None", ",", "text", "for", "idx", ",", "char", "in", "enumerate", "(", "text", ")", ":", "if", "encoder", ".", "can_encode", ...	30.461538	0.002451
def create_data_file_attachment(self, identifier, resource_id, filename, mime_type=None): """Attach a given data file with a model run. The attached file is identified by the resource identifier. If a resource with the given identifier already exists it will be overwritten. This operati...	[ "def", "create_data_file_attachment", "(", "self", ",", "identifier", ",", "resource_id", ",", "filename", ",", "mime_type", "=", "None", ")", ":", "# Get model run to ensure that it exists", "model_run", "=", "self", ".", "get_object", "(", "identifier", ")", "if",...	43.945946	0.001203
def parse_method_configs(interface_config): """Creates default retry and timeout objects for each method in a gapic interface config. Args: interface_config (Mapping): The interface config section of the full gapic library config. For example, If the full configuration has a...	[ "def", "parse_method_configs", "(", "interface_config", ")", ":", "# Grab all the retry codes", "retry_codes_map", "=", "{", "name", ":", "retry_codes", "for", "name", ",", "retry_codes", "in", "six", ".", "iteritems", "(", "interface_config", ".", "get", "(", "\"...	35.272727	0.002006
def _get_gecos(name): ''' Retrieve GECOS field info and return it in dictionary form ''' gecos_field = pwd.getpwnam(name).pw_gecos.split(',', 3) if not gecos_field: return {} else: # Assign empty strings for any unspecified trailing GECOS fields while len(gecos_field) < 4...	[ "def", "_get_gecos", "(", "name", ")", ":", "gecos_field", "=", "pwd", ".", "getpwnam", "(", "name", ")", ".", "pw_gecos", ".", "split", "(", "','", ",", "3", ")", "if", "not", "gecos_field", ":", "return", "{", "}", "else", ":", "# Assign empty string...	38.8	0.001678
def _determine_outliers_index(hist: Hist, moving_average_threshold: float = 1.0, number_of_values_to_search_ahead: int = 5, limit_of_number_of_values_below_threshold: int = None) -> int: """ Determine the location of where out...	[ "def", "_determine_outliers_index", "(", "hist", ":", "Hist", ",", "moving_average_threshold", ":", "float", "=", "1.0", ",", "number_of_values_to_search_ahead", ":", "int", "=", "5", ",", "limit_of_number_of_values_below_threshold", ":", "int", "=", "None", ")", "-...	49.728571	0.009014
def ecef2geodetic(x: float, y: float, z: float, ell: Ellipsoid = None, deg: bool = True) -> Tuple[float, float, float]: """ convert ECEF (meters) to geodetic coordinates Parameters ---------- x : float or numpy.ndarray of float target x ECEF coordinate (meters) y : flo...	[ "def", "ecef2geodetic", "(", "x", ":", "float", ",", "y", ":", "float", ",", "z", ":", "float", ",", "ell", ":", "Ellipsoid", "=", "None", ",", "deg", ":", "bool", "=", "True", ")", "->", "Tuple", "[", "float", ",", "float", ",", "float", "]", ...	26.468354	0.002305
def _write_move_counts(self, sess, h): """Add move counts from the given histogram to the table. Used to update the move counts in an existing table. Should not be needed except for backfill or repair. Args: sess: TF session to use for doing a Bigtable write. tf_t...	[ "def", "_write_move_counts", "(", "self", ",", "sess", ",", "h", ")", ":", "def", "gen", "(", ")", ":", "for", "k", ",", "v", "in", "h", ".", "items", "(", ")", ":", "# The keys in the histogram may be of type 'bytes'", "k", "=", "str", "(", "k", ",", ...	42.833333	0.001903
def update_sg(self, context, sg, rule_id, action): """Begins the async update process.""" db_sg = db_api.security_group_find(context, id=sg, scope=db_api.ONE) if not db_sg: return None with context.session.begin(): job_body = dict(action="%s sg rule %s" % (action,...	[ "def", "update_sg", "(", "self", ",", "context", ",", "sg", ",", "rule_id", ",", "action", ")", ":", "db_sg", "=", "db_api", ".", "security_group_find", "(", "context", ",", "id", "=", "sg", ",", "scope", "=", "db_api", ".", "ONE", ")", "if", "not", ...	47.222222	0.002307
def get_raw(self): """ Get the reconstructed code as bytearray :rtype: bytearray """ code_raw = self.code.get_raw() self.insns_size = (len(code_raw) // 2) + (len(code_raw) % 2) buff = bytearray() buff += pack("<H", self.registers_size) + \ ...	[ "def", "get_raw", "(", "self", ")", ":", "code_raw", "=", "self", ".", "code", ".", "get_raw", "(", ")", "self", ".", "insns_size", "=", "(", "len", "(", "code_raw", ")", "//", "2", ")", "+", "(", "len", "(", "code_raw", ")", "%", "2", ")", "bu...	29.814815	0.009627
def _get_collection(self, collection_uri, request_headers=None): """Generator function that returns collection members.""" # get the collection status, headers, thecollection = self._rest_get(collection_uri) if status != 200: msg = self._get_extended_error(thecollection) ...	[ "def", "_get_collection", "(", "self", ",", "collection_uri", ",", "request_headers", "=", "None", ")", ":", "# get the collection", "status", ",", "headers", ",", "thecollection", "=", "self", ".", "_rest_get", "(", "collection_uri", ")", "if", "status", "!=", ...	47.465517	0.000712
def cli(env, identifier, enabled, port, weight, healthcheck_type, ip_address): """Edit the properties of a service group.""" mgr = SoftLayer.LoadBalancerManager(env.client) loadbal_id, service_id = loadbal.parse_id(identifier) # check if any input is provided if ((not any([ip_address, weight, por...	[ "def", "cli", "(", "env", ",", "identifier", ",", "enabled", ",", "port", ",", "weight", ",", "healthcheck_type", ",", "ip_address", ")", ":", "mgr", "=", "SoftLayer", ".", "LoadBalancerManager", "(", "env", ".", "client", ")", "loadbal_id", ",", "service_...	36.607143	0.000951
def next(self, Class=True, scope=True, reverse=False): """Returns the next element, if it is of the specified type and if it does not cross the boundary of the defined scope. Returns None if no next element is found. Non-authoritative elements are never returned. Arguments: * ``Class``: The...	[ "def", "next", "(", "self", ",", "Class", "=", "True", ",", "scope", "=", "True", ",", "reverse", "=", "False", ")", ":", "if", "Class", "is", "True", ":", "Class", "=", "self", ".", "__class__", "if", "scope", "is", "True", ":", "scope", "=", "S...	56.551724	0.012886
def get_html(self, url, params=None, cache_cb=None, decoder_encoding=None, decoder_errors=url_specified_decoder.ErrorsHandle.strict, **kwargs): """ Get html of an url. """ response = sel...	[ "def", "get_html", "(", "self", ",", "url", ",", "params", "=", "None", ",", "cache_cb", "=", "None", ",", "decoder_encoding", "=", "None", ",", "decoder_errors", "=", "url_specified_decoder", ".", "ErrorsHandle", ".", "strict", ",", "", "", "kwargs", ")...	27.772727	0.012658
def write(self, output_buffer, kmip_version=enums.KMIPVersion.KMIP_1_0): """ Write the data encoding the Create response payload to a buffer. Args: output_buffer (stream): A data buffer in which to encode object data, supporting a write method. kmip_versi...	[ "def", "write", "(", "self", ",", "output_buffer", ",", "kmip_version", "=", "enums", ".", "KMIPVersion", ".", "KMIP_1_0", ")", ":", "local_buffer", "=", "utils", ".", "BytearrayStream", "(", ")", "if", "self", ".", "_object_type", ":", "self", ".", "_obje...	35.145833	0.001153
def init_c_overturn(step): """Initial concentration. This compute the resulting composition profile if fractional crystallization of a SMO is assumed. Args: step (:class:`~stagpy.stagyydata._Step`): a step of a StagyyData instance. Returns: tuple of :class:`numpy.array`...	[ "def", "init_c_overturn", "(", "step", ")", ":", "rbot", ",", "rtop", "=", "misc", ".", "get_rbounds", "(", "step", ")", "xieut", "=", "step", ".", "sdat", ".", "par", "[", "'tracersin'", "]", "[", "'fe_eut'", "]", "k_fe", "=", "step", ".", "sdat", ...	32	0.000948
def download_url_to_path(self, url, path, force=False): """ Download a file from url via http, and put it at path Parameters ---------- url : str URL of file to download path : str local path to put file in """ path_exists = isf...	[ "def", "download_url_to_path", "(", "self", ",", "url", ",", "path", ",", "force", "=", "False", ")", ":", "path_exists", "=", "isfile", "(", "path", ")", "if", "not", "path_exists", "or", "force", ":", "dir", "=", "dirname", "(", "path", ")", "if", ...	31.931034	0.002095
def bytes_from_readable_size(C, size, suffix='B'): """given a readable_size (as produced by File.readable_size()), return the number of bytes.""" s = re.split("^([0-9\.]+)\s*([%s]?)%s?" % (''.join(C.SIZE_UNITS), suffix), size, flags=re.I) bytes, unit = round(float(s[1])), s[2].upper() wh...	[ "def", "bytes_from_readable_size", "(", "C", ",", "size", ",", "suffix", "=", "'B'", ")", ":", "s", "=", "re", ".", "split", "(", "\"^([0-9\\.]+)\\s*([%s]?)%s?\"", "%", "(", "''", ".", "join", "(", "C", ".", "SIZE_UNITS", ")", ",", "suffix", ")", ",", ...	60	0.01232
def delete(self): " Delete the address." response = self.dyn.delete(self.delete_url) return response.content['job_id']	[ "def", "delete", "(", "self", ")", ":", "response", "=", "self", ".", "dyn", ".", "delete", "(", "self", ".", "delete_url", ")", "return", "response", ".", "content", "[", "'job_id'", "]" ]	34.75	0.014085
def multiifo_noise_coinc_rate(rates, slop): """ Calculate the expected rate of noise coincidences for multiple detectors Parameters ---------- rates: dict Dictionary keyed on ifo string Value is a sequence of single-detector trigger rates, units assumed to be Hz slop: fl...	[ "def", "multiifo_noise_coinc_rate", "(", "rates", ",", "slop", ")", ":", "ifos", "=", "numpy", ".", "array", "(", "sorted", "(", "rates", ".", "keys", "(", ")", ")", ")", "rates_raw", "=", "list", "(", "rates", "[", "ifo", "]", "for", "ifo", "in", ...	37.804348	0.000561
def load(self): """ Load the stream definition from the database :return: None """ with switch_db(StreamDefinitionModel, 'hyperstream'): self.mongo_model = StreamDefinitionModel.objects.get(__raw__=self.stream_id.as_raw()) self._calculated_intervals = sel...	[ "def", "load", "(", "self", ")", ":", "with", "switch_db", "(", "StreamDefinitionModel", ",", "'hyperstream'", ")", ":", "self", ".", "mongo_model", "=", "StreamDefinitionModel", ".", "objects", ".", "get", "(", "__raw__", "=", "self", ".", "stream_id", ".",...	39.111111	0.011111
def export_chat_invite_link(self, args, kwargs): """See :func:`export_chat_invite_link`""" return export_chat_invite_link(args, self._merge_overrides(kwargs)).run()	[ "def", "export_chat_invite_link", "(", "self", ",", "", "args", ",", "", "", "kwargs", ")", ":", "return", "export_chat_invite_link", "(", "", "args", ",", "", "", "self", ".", "_merge_overrides", "(", "", "", "kwargs", ")", ")", ".", "run", "(...	62	0.015957
def map(self, fn, iterables, *kwargs): """Returns an iterator equivalent to map(fn, iter). Args: fn: A callable that will take as many arguments as there are passed iterables. timeout: The maximum number of seconds to wait. If None, then there i...	[ "def", "map", "(", "self", ",", "fn", ",", "", "iterables", ",", "", "*", "kwargs", ")", ":", "timeout", "=", "kwargs", ".", "get", "(", "'timeout'", ",", "None", ")", "chunksize", "=", "kwargs", ".", "get", "(", "'chunksize'", ",", "1", ")", "...	42.16129	0.001496
def get_words(data): """ Extracts the words from given string. Usage:: >>> get_words("Users are: John Doe, Jane Doe, Z6PO.") [u'Users', u'are', u'John', u'Doe', u'Jane', u'Doe', u'Z6PO'] :param data: Data to extract words from. :type data: unicode :return: Words. :rtype: l...	[ "def", "get_words", "(", "data", ")", ":", "words", "=", "re", ".", "findall", "(", "r\"\\w+\"", ",", "data", ")", "LOGGER", ".", "debug", "(", "\"> Words: '{0}'\"", ".", "format", "(", "\", \"", ".", "join", "(", "words", ")", ")", ")", "return", "w...	23.833333	0.002242
def invert(image): """Return an inverted image of the same dtype. Assumes the full range of the input dtype is in use and that no negative values are present in the input image. :param image: :class:`jicbioimage.core.image.Image` :returns: inverted image of the same dtype as the input """ ...	[ "def", "invert", "(", "image", ")", ":", "if", "image", ".", "dtype", "==", "bool", ":", "return", "np", ".", "logical_not", "(", "image", ")", "maximum", "=", "np", ".", "iinfo", "(", "image", ".", "dtype", ")", ".", "max", "maximum_array", "=", "...	36.428571	0.001912
def parser(description=None, usage=None): """Parse out command line arguments""" class ArgNamespace(object): def __init__(self, result): self._result = result def __getattr__(self, name): try: super(ArgNamespace, self).__getattr__(name) excep...	[ "def", "parser", "(", "description", "=", "None", ",", "usage", "=", "None", ")", ":", "class", "ArgNamespace", "(", "object", ")", ":", "def", "__init__", "(", "self", ",", "result", ")", ":", "self", ".", "_result", "=", "result", "def", "__getattr__...	31.857143	0.000544
def filter_service_by_host_tag_name(tpl): """Filter for service Filter on tag :param tpl: tag to filter :type tpl: str :return: Filter :rtype: bool """ def inner_filter(items): """Inner filter for service. Accept if tpl in service.host.tags""" service = items["service"]...	[ "def", "filter_service_by_host_tag_name", "(", "tpl", ")", ":", "def", "inner_filter", "(", "items", ")", ":", "\"\"\"Inner filter for service. Accept if tpl in service.host.tags\"\"\"", "service", "=", "items", "[", "\"service\"", "]", "host", "=", "items", "[", "\"hos...	25.947368	0.001957
def job_data(job_id): '''Get the raw data that the job returned. The mimetype will be the value provided in the metdata for the key ``mimetype``. Results: :rtype: string :statuscode 200: no error :statuscode 403: not authorized to view the job's data :statuscode 404: job id not found ...	[ "def", "job_data", "(", "job_id", ")", ":", "job_dict", "=", "db", ".", "get_job", "(", "job_id", ")", "if", "not", "job_dict", ":", "return", "json", ".", "dumps", "(", "{", "'error'", ":", "'job_id not found'", "}", ")", ",", "404", ",", "headers", ...	36.136364	0.001225
def seasons(ephemeris): """Build a function of time that returns the quarter of the year. The function that this returns will expect a single argument that is a :class:`~skyfield.timelib.Time` and will return 0 through 3 for the seasons Spring, Summer, Autumn, and Winter. """ earth = ephemeris...	[ "def", "seasons", "(", "ephemeris", ")", ":", "earth", "=", "ephemeris", "[", "'earth'", "]", "sun", "=", "ephemeris", "[", "'sun'", "]", "def", "season_at", "(", "t", ")", ":", "\"\"\"Return season 0 (Spring) through 3 (Winter) at time `t`.\"\"\"", "t", ".", "_...	34.25	0.00142
def create(self, key, args, kwargs): """ Creates and inserts an identified object with the passed params using the specified class. """ instance = self._class(key, args, **kwargs) self._events.create.trigger(list=self, instance=instance, key=key, args=args, kwargs...	[ "def", "create", "(", "self", ",", "key", ",", "", "args", ",", "", "", "kwargs", ")", ":", "instance", "=", "self", ".", "_class", "(", "key", ",", "", "args", ",", "", "", "kwargs", ")", "self", ".", "_events", ".", "create", ".", "trig...	44.75	0.008219
def update(self, params, path, kwargs): """ Test Update :param params: :param path: :param random: """ self.client.request('POST', params, path, kwargs)	[ "def", "update", "(", "self", ",", "params", ",", "path", ",", "", "", "kwargs", ")", ":", "self", ".", "client", ".", "request", "(", "'POST'", ",", "params", ",", "path", ",", "", "", "kwargs", ")" ]	25.625	0.009434
def check_for_old_config(ipython_dir=None): """Check for old config files, and present a warning if they exist. A link to the docs of the new config is included in the message. This should mitigate confusion with the transition to the new config system in 0.11. """ if ipython_dir is None: ...	[ "def", "check_for_old_config", "(", "ipython_dir", "=", "None", ")", ":", "if", "ipython_dir", "is", "None", ":", "ipython_dir", "=", "get_ipython_dir", "(", ")", "old_configs", "=", "[", "'ipy_user_conf.py'", ",", "'ipythonrc'", ",", "'ipython_config.py'", "]", ...	40.6875	0.002251
def setup_installed_apps(cls): """ To import 3rd party applications along with associated properties It is a list of dict or string. When a dict, it contains the `app` key and the configuration, if it's a string, it is just the app name If you require dependencies from...	[ "def", "setup_installed_apps", "(", "cls", ")", ":", "cls", ".", "_installed_apps", "=", "cls", ".", "_app", ".", "config", ".", "get", "(", "\"INSTALLED_APPS\"", ",", "[", "]", ")", "if", "cls", ".", "_installed_apps", ":", "def", "import_app", "(", "mo...	36.166667	0.001923
def qplane(qplane_tile_dict, fseries, return_complex=False): """Performs q-transform on each tile for each q-plane and selects tile with the maximum energy. Q-transform can then be interpolated to a desired frequency and time resolution. Parameters ---------- qplane_tile_dict: Dic...	[ "def", "qplane", "(", "qplane_tile_dict", ",", "fseries", ",", "return_complex", "=", "False", ")", ":", "# store q-transforms for each q in a dict", "qplanes", "=", "{", "}", "max_energy", ",", "max_key", "=", "None", ",", "None", "for", "i", ",", "q", "in", ...	34.617021	0.000598
def get_data(name, train_batch_size, test_batch_size): """Gets training and testing dataset iterators. Args: name: String. Name of dataset, either 'mnist' or 'cifar10'. train_batch_size: Integer. Batch size for training. test_batch_size: Integer. Batch size for testing. Returns: Dict containing:...	[ "def", "get_data", "(", "name", ",", "train_batch_size", ",", "test_batch_size", ")", ":", "if", "name", "not", "in", "[", "'mnist'", ",", "'cifar10'", "]", ":", "raise", "ValueError", "(", "'Expected dataset \\'mnist\\' or \\'cifar10\\', but got %s'", "%", "name", ...	36.185185	0.011958
def check_exists(self): ''' Check if resource exists, update self.exists, returns Returns: None: sets self.exists ''' response = self.repo.api.http_request('HEAD', self.uri) self.status_code = response.status_code # resource exists if self.status_code == 200: self.exists = True # resource no ...	[ "def", "check_exists", "(", "self", ")", ":", "response", "=", "self", ".", "repo", ".", "api", ".", "http_request", "(", "'HEAD'", ",", "self", ".", "uri", ")", "self", ".", "status_code", "=", "response", ".", "status_code", "# resource exists", "if", ...	22.142857	0.039175
def with_pivot(self, *columns): """ Set the columns on the pivot table to retrieve. """ columns = list(columns) self._pivot_columns += columns return self	[ "def", "with_pivot", "(", "self", ",", "*", "columns", ")", ":", "columns", "=", "list", "(", "columns", ")", "self", ".", "_pivot_columns", "+=", "columns", "return", "self" ]	21.777778	0.009804
def readSAM(SAMfile,header=False): """ Reads and parses a sam file. :param SAMfile: /path/to/file.sam :param header: logical, if True, reads the header information :returns: a pandas dataframe with the respective SAM columns: 'QNAME','FLAG','RNAME','POS','MAPQ','CIGAR','RNEXT','PNEXT','TLEN','SEQ'...	[ "def", "readSAM", "(", "SAMfile", ",", "header", "=", "False", ")", ":", "if", "header", "==", "True", ":", "f", "=", "open", "(", "SAMfile", ",", "\"r+\"", ")", "head", "=", "[", "]", "for", "line", "in", "f", ".", "readlines", "(", ")", ":", ...	31.179487	0.038278
def timestamp_YmdHMS(value): """Convert timestamp string to time in seconds since epoch. Timestamps strings like '20130618120000' are able to be converted by this function. Args: value: A timestamp string in the format '%Y%m%d%H%M%S'. Returns: The time in seconds since epoch as an...	[ "def", "timestamp_YmdHMS", "(", "value", ")", ":", "i", "=", "int", "(", "value", ")", "S", "=", "i", "M", "=", "S", "//", "100", "H", "=", "M", "//", "100", "d", "=", "H", "//", "100", "m", "=", "d", "//", "100", "Y", "=", "m", "//", "10...	23.555556	0.001511
def setattr(self, key, value): """ This method sets attribute of a Managed Object. """ if (UcsUtils.FindClassIdInMoMetaIgnoreCase(self.classId) != None): if (key in _ManagedObjectMeta[self.classId]): propMeta = UcsUtils.GetUcsPropertyMeta(self.classId, key) if (propMeta.ValidatePropertyValue(value) == F...	[ "def", "setattr", "(", "self", ",", "key", ",", "value", ")", ":", "if", "(", "UcsUtils", ".", "FindClassIdInMoMetaIgnoreCase", "(", "self", ".", "classId", ")", "!=", "None", ")", ":", "if", "(", "key", "in", "_ManagedObjectMeta", "[", "self", ".", "c...	32.421053	0.031546
def mimf_ferrario(mi): ''' Curvature MiMf from Ferrario etal. 2005MNRAS.361.1131.''' mf=-0.00012336mi6+0.003160mi*5-0.02960mi*4+\ 0.12350mi*3-0.21550mi*2+0.19022mi+0.46575 return mf	[ "def", "mimf_ferrario", "(", "mi", ")", ":", "mf", "=", "-", "0.00012336", "", "mi", "", "6", "+", "0.003160", "", "mi", "*", "5", "-", "0.02960", "", "mi", "*", "4", "+", "0.12350", "", "mi", "*", "3", "-", "0.21550", "", "mi", "**",...	35.166667	0.023148
def _get_result_constructor(self): """ Returns a function that will be used to instantiate query results """ if not self._values_list: # we want models return lambda rows: self.model._construct_instance(rows) elif self._flat_values_list: # the user has requested flattened list (1 val...	[ "def", "_get_result_constructor", "(", "self", ")", ":", "if", "not", "self", ".", "_values_list", ":", "# we want models", "return", "lambda", "rows", ":", "self", ".", "model", ".", "_construct_instance", "(", "rows", ")", "elif", "self", ".", "_flat_values_...	58.25	0.012685
def request(self, method, url, access_token=None, **kwargs): """ 向微信服务器发送请求 :param method: 请求方法 :param url: 请求地址 :param access_token: access token 值, 如果初始化时传入 conf 会自动获取, 如果没有传入则请提供此值 :param kwargs: 附加数据 :return: 微信服务器响应的 JSON 数据 """ access_token =...	[ "def", "request", "(", "self", ",", "method", ",", "url", ",", "access_token", "=", "None", ",", "", "", "kwargs", ")", ":", "access_token", "=", "self", ".", "__conf", ".", "access_token", "if", "self", ".", "__conf", "is", "not", "None", "else", ...	32.692308	0.002285
def Freqs(self,jr,jphi,jz,**kwargs): """ NAME: Freqs PURPOSE: return the frequencies corresponding to a torus INPUT: jr - radial action (scalar) jphi - azimuthal action (scalar) jz - vertical action (scalar) tol= (...	[ "def", "Freqs", "(", "self", ",", "jr", ",", "jphi", ",", "jz", ",", "", "", "kwargs", ")", ":", "out", "=", "actionAngleTorus_c", ".", "actionAngleTorus_Freqs_c", "(", "self", ".", "_pot", ",", "jr", ",", "jphi", ",", "jz", ",", "tol", "=", "kwa...	22.567568	0.014925
def put_group_policy(group_name, policy_name, policy_json, region=None, key=None, keyid=None, profile=None): ''' Adds or updates the specified policy document for the specified group. .. versionadded:: 2015.8.0 CLI Example: .. code-block:: bash salt myminion boto_iam...	[ "def", "put_group_policy", "(", "group_name", ",", "policy_name", ",", "policy_json", ",", "region", "=", "None", ",", "key", "=", "None", ",", "keyid", "=", "None", ",", "profile", "=", "None", ")", ":", "group", "=", "get_group", "(", "group_name", ","...	38.09375	0.0016
def min_weighted_vertex_cover(G, weight=None, sampler=None, **sampler_args): """Returns an approximate minimum weighted vertex cover. Defines a QUBO with ground states corresponding to a minimum weighted vertex cover and uses the sampler to sample from it. A vertex cover is a set of vertices such that...	[ "def", "min_weighted_vertex_cover", "(", "G", ",", "weight", "=", "None", ",", "sampler", "=", "None", ",", "", "", "sampler_args", ")", ":", "indep_nodes", "=", "set", "(", "maximum_weighted_independent_set", "(", "G", ",", "weight", ",", "sampler", ",", ...	36.527273	0.000969
def _to_json_type(obj, classkey=None): """ Recursively convert the object instance into a valid JSON type. """ if isinstance(obj, dict): data = {} for (k, v) in obj.items(): data[k] = _to_json_type(v, classkey) return data elif hasattr(obj, "_ast"): return _to...	[ "def", "_to_json_type", "(", "obj", ",", "classkey", "=", "None", ")", ":", "if", "isinstance", "(", "obj", ",", "dict", ")", ":", "data", "=", "{", "}", "for", "(", "k", ",", "v", ")", "in", "obj", ".", "items", "(", ")", ":", "data", "[", "...	35.304348	0.001199
def validateOneElement(self, ctxt, elem): """Try to validate a single element and it's attributes, basically it does the following checks as described by the XML-1.0 recommendation: - [ VC: Element Valid ] - [ VC: Required Attribute ] Then call xmlValidateOneAttribute() f...	[ "def", "validateOneElement", "(", "self", ",", "ctxt", ",", "elem", ")", ":", "if", "ctxt", "is", "None", ":", "ctxt__o", "=", "None", "else", ":", "ctxt__o", "=", "ctxt", ".", "_o", "if", "elem", "is", "None", ":", "elem__o", "=", "None", "else", ...	48.461538	0.009346
def run(self, stdout_func = None, stdin_func = None, stderr_func = None): """Runs the process, using the provided functions for I/O. The function stdin_func should return strings whenever a character or characters become available. The functions stdout_func and stderr_func are called wh...	[ "def", "run", "(", "self", ",", "stdout_func", "=", "None", ",", "stdin_func", "=", "None", ",", "stderr_func", "=", "None", ")", ":", "if", "stdout_func", "==", "None", "and", "stdin_func", "==", "None", "and", "stderr_func", "==", "None", ":", "return"...	44.68	0.00876
def p_let_arr_substr_in_args2(p): """ statement : LET ARRAY_ID LP arguments COMMA TO expr RP EQ expr \| ARRAY_ID LP arguments COMMA TO expr RP EQ expr """ i = 2 if p[1].upper() == 'LET' else 1 id_ = p[i] arg_list = p[i + 2] top_ = p[i + 5] substr = (make_number(0, lineno=p....	[ "def", "p_let_arr_substr_in_args2", "(", "p", ")", ":", "i", "=", "2", "if", "p", "[", "1", "]", ".", "upper", "(", ")", "==", "'LET'", "else", "1", "id_", "=", "p", "[", "i", "]", "arg_list", "=", "p", "[", "i", "+", "2", "]", "top_", "=", ...	35.833333	0.002268
def read_crn(filename): """ Read NOAA USCRN [1]_ [2]_ fixed-width file into pandas dataframe. Parameters ---------- filename: str filepath or url to read for the fixed-width file. Returns ------- data: Dataframe A dataframe with DatetimeIndex and all of the variables in...	[ "def", "read_crn", "(", "filename", ")", ":", "# read in data", "data", "=", "pd", ".", "read_fwf", "(", "filename", ",", "header", "=", "None", ",", "names", "=", "HEADERS", ".", "split", "(", "' '", ")", ",", "widths", "=", "WIDTHS", ")", "# loop her...	33.203125	0.000457
def independent_data(self): """ Read-only Property :return: Data belonging to each independent variable as a dict with variable names as key, data as value. :rtype: collections.OrderedDict """ return OrderedDict((var, self.data[var]) for var in self.mode...	[ "def", "independent_data", "(", "self", ")", ":", "return", "OrderedDict", "(", "(", "var", ",", "self", ".", "data", "[", "var", "]", ")", "for", "var", "in", "self", ".", "model", ".", "independent_vars", ")" ]	36.777778	0.00885
def imagej_metadata_tag(metadata, byteorder): """Return IJMetadata and IJMetadataByteCounts tags from metadata dict. The tags can be passed to the TiffWriter.save function as extratags. The metadata dict may contain the following keys and values: Info : str Human-readable information ...	[ "def", "imagej_metadata_tag", "(", "metadata", ",", "byteorder", ")", ":", "header", "=", "[", "{", "'>'", ":", "b'IJIJ'", ",", "'<'", ":", "b'JIJI'", "}", "[", "byteorder", "]", "]", "bytecounts", "=", "[", "0", "]", "body", "=", "[", "]", "def", ...	32.12	0.000403
def add(self, field, val): "Add a sample" if engine.FieldDefinition.FIELDS[field]._matcher is matching.TimeFilter: val = self._basetime - val try: self.total[field] += val self.min[field] = min(self.min[field], val) if field in self.min else val s...	[ "def", "add", "(", "self", ",", "field", ",", "val", ")", ":", "if", "engine", ".", "FieldDefinition", ".", "FIELDS", "[", "field", "]", ".", "_matcher", "is", "matching", ".", "TimeFilter", ":", "val", "=", "self", ".", "_basetime", "-", "val", "try...	38.909091	0.009132
def check_archs(copied_libs, require_archs=(), stop_fast=False): """ Check compatibility of archs in `copied_libs` dict Parameters ---------- copied_libs : dict dict containing the (key, value) pairs of (``copied_lib_path``, ``dependings_dict``), where ``copied_lib_path`` is a library r...	[ "def", "check_archs", "(", "copied_libs", ",", "require_archs", "=", "(", ")", ",", "stop_fast", "=", "False", ")", ":", "if", "isinstance", "(", "require_archs", ",", "string_types", ")", ":", "require_archs", "=", "(", "[", "'i386'", ",", "'x86_64'", "]"...	50.05	0.000327
def _place_order(self, side, product_id='BTC-USD', client_oid=None, type=None, stp=None, price=None, size=None, funds=None, time_in_force=None, ...	[ "def", "_place_order", "(", "self", ",", "side", ",", "product_id", "=", "'BTC-USD'", ",", "client_oid", "=", "None", ",", "type", "=", "None", ",", "stp", "=", "None", ",", "price", "=", "None", ",", "size", "=", "None", ",", "funds", "=", "None", ...	28.148148	0.029262
def fast_comp(seq1, seq2, transpositions=False): """Compute the distance between the two sequences `seq1` and `seq2` up to a maximum of 2 included, and return it. If the edit distance between the two sequences is higher than that, -1 is returned. If `transpositions` is `True`, transpositions will be taken into ac...	[ "def", "fast_comp", "(", "seq1", ",", "seq2", ",", "transpositions", "=", "False", ")", ":", "replace", ",", "insert", ",", "delete", "=", "\"r\"", ",", "\"i\"", ",", "\"d\"", "L1", ",", "L2", "=", "len", "(", "seq1", ")", ",", "len", "(", "seq2", ...	22.775	0.044187
def _format_envvar(param): """Format the envvars of a `click.Option` or `click.Argument`.""" yield '.. envvar:: {}'.format(param.envvar) yield ' :noindex:' yield '' if isinstance(param, click.Argument): param_ref = param.human_readable_name else: # if a user has defined an opt ...	[ "def", "_format_envvar", "(", "param", ")", ":", "yield", "'.. envvar:: {}'", ".", "format", "(", "param", ".", "envvar", ")", "yield", "' :noindex:'", "yield", "''", "if", "isinstance", "(", "param", ",", "click", ".", "Argument", ")", ":", "param_ref", ...	40.923077	0.001838
def uid(self, p_todo): """ Returns the unique text-based ID for a todo item. """ try: return self._todo_id_map[p_todo] except KeyError as ex: raise InvalidTodoException from ex	[ "def", "uid", "(", "self", ",", "p_todo", ")", ":", "try", ":", "return", "self", ".", "_todo_id_map", "[", "p_todo", "]", "except", "KeyError", "as", "ex", ":", "raise", "InvalidTodoException", "from", "ex" ]	29.125	0.008333
def _make_zipfile(base_name, base_dir, verbose=0, dry_run=0, logger=None): """Create a zip file from all the files under 'base_dir'. The output zip file will be named 'base_name' + ".zip". Uses either the "zipfile" Python module (if available) or the InfoZIP "zip" utility (if installed and found on th...	[ "def", "_make_zipfile", "(", "base_name", ",", "base_dir", ",", "verbose", "=", "0", ",", "dry_run", "=", "0", ",", "logger", "=", "None", ")", ":", "zip_filename", "=", "base_name", "+", "\".zip\"", "archive_dir", "=", "os", ".", "path", ".", "dirname",...	36.108696	0.000586
def _parse_pet_record(self, root): """ Given a <pet> Element from a pet.get or pet.getRandom response, pluck out the pet record. :param lxml.etree._Element root: A <pet> tag Element. :rtype: dict :returns: An assembled pet record. """ record = { ...	[ "def", "_parse_pet_record", "(", "self", ",", "root", ")", ":", "record", "=", "{", "\"breeds\"", ":", "[", "]", ",", "\"photos\"", ":", "[", "]", ",", "\"options\"", ":", "[", "]", ",", "\"contact\"", ":", "{", "}", ",", "}", "# These fields can just ...	35.901639	0.000889
def get(self, obj, cls): """ Using the lowercase name of the class as node_type, returns `obj.visit_{node_type}`, or `obj.visit_default` if the type-specific method is not found. """ method = self._cache.get(cls) if not method: name = "visit_" + cls.__name__.lower() method = getattr(...	[ "def", "get", "(", "self", ",", "obj", ",", "cls", ")", ":", "method", "=", "self", ".", "_cache", ".", "get", "(", "cls", ")", "if", "not", "method", ":", "name", "=", "\"visit_\"", "+", "cls", ".", "__name__", ".", "lower", "(", ")", "method", ...	35.363636	0.012531
def _get_raw_objects(self): """ Helper function to populate the first page of raw objects for this tag. This has the side effect of creating the ``_raw_objects`` attribute of this object. """ if not hasattr(self, '_raw_objects'): result = self._client.get(type...	[ "def", "_get_raw_objects", "(", "self", ")", ":", "if", "not", "hasattr", "(", "self", ",", "'_raw_objects'", ")", ":", "result", "=", "self", ".", "_client", ".", "get", "(", "type", "(", "self", ")", ".", "api_endpoint", ",", "model", "=", "self", ...	41.642857	0.008389
def account_block(self, id): """ Block a user. Returns a `relationship dict`_ containing the updated relationship to the user. """ id = self.__unpack_id(id) url = '/api/v1/accounts/{0}/block'.format(str(id)) return self.__api_request('POST', url)	[ "def", "account_block", "(", "self", ",", "id", ")", ":", "id", "=", "self", ".", "__unpack_id", "(", "id", ")", "url", "=", "'/api/v1/accounts/{0}/block'", ".", "format", "(", "str", "(", "id", ")", ")", "return", "self", ".", "__api_request", "(", "'...	32.777778	0.009901
def fingerprints(self, keyhalf='any', keytype='any'): """ List loaded fingerprints with some optional filtering. :param str keyhalf: Can be 'any', 'public', or 'private'. If 'public', or 'private', the fingerprints of keys of the the other type will not be included i...	[ "def", "fingerprints", "(", "self", ",", "keyhalf", "=", "'any'", ",", "keytype", "=", "'any'", ")", ":", "return", "{", "pk", ".", "fingerprint", "for", "pk", "in", "self", ".", "_keys", ".", "values", "(", ")", "if", "pk", ".", "is_primary", "in", ...	67.666667	0.008746
def deleteAttachment(self, oid, attachment_id): """ removes an attachment from a feature service feature Input: oid - integer or string - id of feature attachment_id - integer - id of attachment to erase Output: JSON response """ ...	[ "def", "deleteAttachment", "(", "self", ",", "oid", ",", "attachment_id", ")", ":", "url", "=", "self", ".", "_url", "+", "\"/%s/deleteAttachments\"", "%", "oid", "params", "=", "{", "\"f\"", ":", "\"json\"", ",", "\"attachmentIds\"", ":", "\"%s\"", "%", "...	39.823529	0.010101
def _parse_line_entry(self, line, type): """ Parse a section entry line into its components. In case of a 'vars' section, the first field will be None. Otherwise, the first field will be the unexpanded host or group name the variables apply to. For example: [producti...	[ "def", "_parse_line_entry", "(", "self", ",", "line", ",", "type", ")", ":", "name", "=", "None", "key_values", "=", "{", "}", "if", "type", "==", "'vars'", ":", "key_values", "=", "self", ".", "_parse_line_vars", "(", "line", ")", "else", ":", "tokens...	32.153846	0.002322
def append_transformation(self, transformation, extend_collection=False, clear_redo=True): """ Appends a transformation to all TransformedStructures. Args: transformation: Transformation to append extend_collection: Whether to use more than ...	[ "def", "append_transformation", "(", "self", ",", "transformation", ",", "extend_collection", "=", "False", ",", "clear_redo", "=", "True", ")", ":", "if", "self", ".", "ncores", "and", "transformation", ".", "use_multiprocessing", ":", "p", "=", "Pool", "(", ...	47.609756	0.001506

def bschoi(value, ndim, array, order): """ Do a binary search for a given value within an integer array, accompanied by an order vector. Return the index of the matching array entry, or -1 if the key value is not found. http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/bschoi_c.html :pa...

[ "def", "bschoi", "(", "value", ",", "ndim", ",", "array", ",", "order", ")", ":", "value", "=", "ctypes", ".", "c_int", "(", "value", ")", "ndim", "=", "ctypes", ".", "c_int", "(", "ndim", ")", "array", "=", "stypes", ".", "toIntVector", "(", "arra...

32.958333

0.001229

def dvdot(s1, s2): """ Compute the derivative of the dot product of two double precision position vectors. http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/dvdot_c.html :param s1: First state vector in the dot product. :type s1: 6-Element Array of floats :param s2: Second state vect...

[ "def", "dvdot", "(", "s1", ",", "s2", ")", ":", "assert", "len", "(", "s1", ")", "is", "6", "and", "len", "(", "s2", ")", "is", "6", "s1", "=", "stypes", ".", "toDoubleVector", "(", "s1", ")", "s2", "=", "stypes", ".", "toDoubleVector", "(", "s...

32.555556

0.001658

def FromPublicKey(cls, public_key): """An alternate constructor which generates a new client id.""" # Our CN will be the first 64 bits of the hash of the public key # in MPI format - the length of the key in 4 bytes + the key # prefixed with a 0. This weird format is an artifact from the way # M2Cry...

[ "def", "FromPublicKey", "(", "cls", ",", "public_key", ")", ":", "# Our CN will be the first 64 bits of the hash of the public key", "# in MPI format - the length of the key in 4 bytes + the key", "# prefixed with a 0. This weird format is an artifact from the way", "# M2Crypto handled this, w...

47.769231

0.00158

def _delete_subtree(self, nodes): """ Delete subtree private method. No argument validation and usage of getter/setter private methods is used for speed """ nodes = nodes if isinstance(nodes, list) else [nodes] iobj = [ (self._db[node]["parent"], node...

[ "def", "_delete_subtree", "(", "self", ",", "nodes", ")", ":", "nodes", "=", "nodes", "if", "isinstance", "(", "nodes", ",", "list", ")", "else", "[", "nodes", "]", "iobj", "=", "[", "(", "self", ".", "_db", "[", "node", "]", "[", "\"parent\"", "]"...

34.666667

0.002339

def finalize(self): """ Called at clean up, when the editor is closed. Can be used to disconnect signals. This is often called after the client (e.g. the inspector) is updated. If you want to take action before the update, override prepareCommit instead. Be sure to call the f...

[ "def", "finalize", "(", "self", ")", ":", "for", "subEditor", "in", "self", ".", "_subEditors", ":", "self", ".", "removeSubEditor", "(", "subEditor", ")", "self", ".", "cti", ".", "model", ".", "sigItemChanged", ".", "disconnect", "(", "self", ".", "mod...

53.692308

0.008451

def send(self, content): """Sends a JavaScript command to PS :param content: Script content :type content: str :yields: :class:`.Message` """ LOGGER.debug('Sending: %s', content) all_bytes = struct.pack('>i', Connection.PROTOCOL_VERSION) all_bytes += stru...

[ "def", "send", "(", "self", ",", "content", ")", ":", "LOGGER", ".", "debug", "(", "'Sending: %s'", ",", "content", ")", "all_bytes", "=", "struct", ".", "pack", "(", "'>i'", ",", "Connection", ".", "PROTOCOL_VERSION", ")", "all_bytes", "+=", "struct", "...

31.7

0.002041

def get_version(): "Returns a PEP 386-compliant version number from VERSION." assert len(VERSION) == 5 assert VERSION[3] in ('alpha', 'beta', 'rc', 'final') # Now build the two parts of the version number: # main = X.Y[.Z] # sub = .devN - for pre-alpha releases # | {a|b|c}N - for alpha,...

[ "def", "get_version", "(", ")", ":", "assert", "len", "(", "VERSION", ")", "==", "5", "assert", "VERSION", "[", "3", "]", "in", "(", "'alpha'", ",", "'beta'", ",", "'rc'", ",", "'final'", ")", "# Now build the two parts of the version number:", "# main = X.Y[....

31.473684

0.001623

def replace(obj, **changes): """Return a new object replacing specified fields with new values. This is especially useful for frozen classes. Example usage: @dataclass(frozen=True) class C: x: int y: int c = C(1, 2) c1 = replace(c, x=3) assert c1.x == 3 and ...

[ "def", "replace", "(", "obj", ",", "*", "*", "changes", ")", ":", "# We're going to mutate 'changes', but that's okay because it's a", "# new dict, even if called with 'replace(obj, **my_changes)'.", "if", "not", "_is_dataclass_instance", "(", "obj", ")", ":", "raise", "TypeE...

34.857143

0.000664

def cyclone( adata, marker_pairs, gene_names, sample_names, iterations=1000, min_iter=100, min_pairs=50): """Assigns scores and predicted class to observations [Scialdone15]_ [Fechtner18]_. Calculates scores for each observation and each phase and assigns...

[ "def", "cyclone", "(", "adata", ",", "marker_pairs", ",", "gene_names", ",", "sample_names", ",", "iterations", "=", "1000", ",", "min_iter", "=", "100", ",", "min_pairs", "=", "50", ")", ":", "try", ":", "from", "pypairs", "import", "__version__", "as", ...

34.662162

0.00834

def _onPrevBookmark(self): """Previous Bookmark action triggered. Move cursor """ for block in qutepart.iterateBlocksBackFrom(self._qpart.textCursor().block().previous()): if self.isBlockMarked(block): self._qpart.setTextCursor(QTextCursor(block)) retu...

[ "def", "_onPrevBookmark", "(", "self", ")", ":", "for", "block", "in", "qutepart", ".", "iterateBlocksBackFrom", "(", "self", ".", "_qpart", ".", "textCursor", "(", ")", ".", "block", "(", ")", ".", "previous", "(", ")", ")", ":", "if", "self", ".", ...

45.142857

0.009317

def _search_url(search_term:str, size:str='>400*300', format:str='jpg') -> str: "Return a Google Images Search URL for a given search term." return ('https://www.google.com/search?q=' + quote(search_term) + '&espv=2&biw=1366&bih=667&site=webhp&source=lnms&tbm=isch' + _url_params(size, fo...

[ "def", "_search_url", "(", "search_term", ":", "str", ",", "size", ":", "str", "=", "'>400*300'", ",", "format", ":", "str", "=", "'jpg'", ")", "->", "str", ":", "return", "(", "'https://www.google.com/search?q='", "+", "quote", "(", "search_term", ")", "+...

74.2

0.024

def get_from_relations(self, query,aliases): ''' Returns list of the names of all positive relations in the query ''' return [aliases[rel.get_name()] for rel in query.get_relations() if not rel.is_negated()]

[ "def", "get_from_relations", "(", "self", ",", "query", ",", "aliases", ")", ":", "return", "[", "aliases", "[", "rel", ".", "get_name", "(", ")", "]", "for", "rel", "in", "query", ".", "get_relations", "(", ")", "if", "not", "rel", ".", "is_negated", ...

47

0.016736

def best_item_from_list(item,options,fuzzy=90,fname_match=True,fuzzy_fragment=None,guess=False): '''Returns just the best item, or ``None``''' match = best_match_from_list(item,options,fuzzy,fname_match,fuzzy_fragment,guess) if match: return match[0] return None

[ "def", "best_item_from_list", "(", "item", ",", "options", ",", "fuzzy", "=", "90", ",", "fname_match", "=", "True", ",", "fuzzy_fragment", "=", "None", ",", "guess", "=", "False", ")", ":", "match", "=", "best_match_from_list", "(", "item", ",", "options"...

46.833333

0.045455

def getModelData(self,name): """ Gets the model data associated with the given name. If it was loaded, a cached copy will be returned. It it was not loaded, it will be loaded and cached. """ if name in self.modelcache: return self.modelcache[name] ...

[ "def", "getModelData", "(", "self", ",", "name", ")", ":", "if", "name", "in", "self", ".", "modelcache", ":", "return", "self", ".", "modelcache", "[", "name", "]", "return", "self", ".", "loadModelData", "(", "name", ")" ]

34.7

0.011236

def add(self, pattern, method=None, call=None, name=None): """Add a url pattern. Args: pattern (:obj:`str`): URL pattern to add. This is usually '/' separated path. Parts of the URL can be parameterised using curly braces. Examples: "/", "/pat...

[ "def", "add", "(", "self", ",", "pattern", ",", "method", "=", "None", ",", "call", "=", "None", ",", "name", "=", "None", ")", ":", "if", "not", "pattern", ".", "endswith", "(", "'/'", ")", ":", "pattern", "+=", "'/'", "parts", "=", "tuple", "("...

39.666667

0.001367

def default_table(self, layout, table_content, cols_width): """format a table""" cols_width = [size + 1 for size in cols_width] format_strings = " ".join(["%%-%ss"] * len(cols_width)) format_strings = format_strings % tuple(cols_width) format_strings = format_strings.split(" ") ...

[ "def", "default_table", "(", "self", ",", "layout", ",", "table_content", ",", "cols_width", ")", ":", "cols_width", "=", "[", "size", "+", "1", "for", "size", "in", "cols_width", "]", "format_strings", "=", "\" \"", ".", "join", "(", "[", "\"%%-%ss\"", ...

47.368421

0.002179

def find_goodness_of_fit_csv(observed_simulated_file, out_file=None): """ Finds the goodness of fit comparing observed and simulated flows In the file, the first column is the observed flows and the second column is the simulated flows. Example:: 33.5, 77.2 34.7, 73.0 Paramete...

[ "def", "find_goodness_of_fit_csv", "(", "observed_simulated_file", ",", "out_file", "=", "None", ")", ":", "observed_simulated_table", "=", "np", ".", "loadtxt", "(", "observed_simulated_file", ",", "ndmin", "=", "2", ",", "delimiter", "=", "\",\"", ",", "usecols"...

34.426471

0.000415

def remapScipy(im, coords): """ Remap an image using SciPy. See :func:`remap` for parameters. """ height, width = im.shape[0], im.shape[1] # switch to y,x order coords = coords[:,:,::-1] # make it (h, w, 3, 3) coords_channels = np.empty((height, width, 3, 3)) coords_channel = n...

[ "def", "remapScipy", "(", "im", ",", "coords", ")", ":", "height", ",", "width", "=", "im", ".", "shape", "[", "0", "]", ",", "im", ".", "shape", "[", "1", "]", "# switch to y,x order", "coords", "=", "coords", "[", ":", ",", ":", ",", ":", ":", ...

29.333333

0.02751

def clustered_sortind(x, k=10, scorefunc=None): """ Uses MiniBatch k-means clustering to cluster matrix into groups. Each cluster of rows is then sorted by `scorefunc` -- by default, the max peak height when all rows in a cluster are averaged, or cluster.mean(axis=0).max(). Returns the index t...

[ "def", "clustered_sortind", "(", "x", ",", "k", "=", "10", ",", "scorefunc", "=", "None", ")", ":", "try", ":", "from", "sklearn", ".", "cluster", "import", "MiniBatchKMeans", "except", "ImportError", ":", "raise", "ImportError", "(", "'please install scikits....

32.825397

0.000469

def scaled_dimensions(self, width=None, height=None): """ Return a (cx, cy) 2-tuple representing the native dimensions of this image scaled by applying the following rules to *width* and *height*. If both *width* and *height* are specified, the return value is (*width*, *height*)...

[ "def", "scaled_dimensions", "(", "self", ",", "width", "=", "None", ",", "height", "=", "None", ")", ":", "if", "width", "is", "None", "and", "height", "is", "None", ":", "return", "self", ".", "width", ",", "self", ".", "height", "if", "width", "is"...

48.346154

0.00156

def get_events(self): """Get event list from satellite :return: A copy of the events list :rtype: list """ res = copy.copy(self.events) del self.events[:] return res

[ "def", "get_events", "(", "self", ")", ":", "res", "=", "copy", ".", "copy", "(", "self", ".", "events", ")", "del", "self", ".", "events", "[", ":", "]", "return", "res" ]

23.777778

0.009009

def _bounds_from_array(arr, dim_name, bounds_name): """Get the bounds of an array given its center values. E.g. if lat-lon grid center lat/lon values are known, but not the bounds of each grid box. The algorithm assumes that the bounds are simply halfway between each pair of center values. """ ...

[ "def", "_bounds_from_array", "(", "arr", ",", "dim_name", ",", "bounds_name", ")", ":", "# TODO: don't assume needed dimension is in axis=0", "# TODO: refactor to get rid of repetitive code", "spacing", "=", "arr", ".", "diff", "(", "dim_name", ")", ".", "values", "lower"...

47.2

0.001038

def _query(queue_name=None, build_id=None, release_id=None, run_id=None, count=None): """Queries for work items based on their criteria. Args: queue_name: Optional queue name to restrict to. build_id: Optional build ID to restrict to. release_id: Optional release ID to restri...

[ "def", "_query", "(", "queue_name", "=", "None", ",", "build_id", "=", "None", ",", "release_id", "=", "None", ",", "run_id", "=", "None", ",", "count", "=", "None", ")", ":", "assert", "queue_name", "or", "build_id", "or", "release_id", "or", "run_id", ...

29.393939

0.000998

def get_bounds(self, R): """Calculate lower and upper bounds for centers and widths Parameters ---------- R : 2D array, with shape [n_voxel, n_dim] The coordinate matrix of fMRI data from one subject Returns ------- bounds : 2-tuple of array_like,...

[ "def", "get_bounds", "(", "self", ",", "R", ")", ":", "max_sigma", "=", "self", ".", "_get_max_sigma", "(", "R", ")", "final_lower", "=", "np", ".", "zeros", "(", "self", ".", "K", "*", "(", "self", ".", "n_dim", "+", "1", ")", ")", "final_lower", ...

32.774194

0.001912

def postprocess(x, n_bits_x=8): """Converts x from [-0.5, 0.5], to [0, 255]. Args: x: 3-D or 4-D Tensor normalized between [-0.5, 0.5] n_bits_x: Number of bits representing each pixel of the output. Defaults to 8, to default to 256 possible values. Returns: x: 3-D or 4-D Tensor represen...

[ "def", "postprocess", "(", "x", ",", "n_bits_x", "=", "8", ")", ":", "x", "=", "tf", ".", "where", "(", "tf", ".", "is_finite", "(", "x", ")", ",", "x", ",", "tf", ".", "ones_like", "(", "x", ")", ")", "x", "=", "tf", ".", "clip_by_value", "(...

34.533333

0.013158

def fetch_cluster_se(data, samfile, chrom, rstart, rend): """ Builds a single end cluster from the refmapped data. """ ## If SE then we enforce the minimum overlap distance to avoid the ## staircase syndrome of multiple reads overlapping just a little. overlap_buffer = data._hackersonly["min_SE...

[ "def", "fetch_cluster_se", "(", "data", ",", "samfile", ",", "chrom", ",", "rstart", ",", "rend", ")", ":", "## If SE then we enforce the minimum overlap distance to avoid the", "## staircase syndrome of multiple reads overlapping just a little.", "overlap_buffer", "=", "data", ...

35.979798

0.009016

def set_properties(obj, values): """ Recursively sets values of some (all) object and its subobjects properties. The object can be a user defined object, map or array. Property values correspondently are object properties, map key-pairs or array elements with their indexes. If ...

[ "def", "set_properties", "(", "obj", ",", "values", ")", ":", "if", "values", "==", "None", "or", "len", "(", "values", ")", "==", "0", ":", "return", "for", "(", "key", ",", "value", ")", "in", "values", ".", "items", "(", ")", ":", "RecursiveObje...

40.666667

0.009346

def discover(app, module_name=None): """ Automatically apply the permission logics written in the specified module. Examples -------- Assume if you have a ``perms.py`` in ``your_app`` as:: from permission.logics import AuthorPermissionLogic PERMISSION_LOGICS = ( ('y...

[ "def", "discover", "(", "app", ",", "module_name", "=", "None", ")", ":", "from", "permission", ".", "compat", "import", "import_module", "from", "permission", ".", "compat", "import", "get_model", "from", "permission", ".", "conf", "import", "settings", "from...

35.487179

0.000703

def namedb_delete_prepare( cur, primary_key, primary_key_value, table_name ): """ Prepare to delete a record, but make sure the fields in record correspond to actual columns. Return a DELETE FROM ... WHERE statement on success. Raise an Exception if not. DO NOT CALL THIS METHOD DIRETLY ...

[ "def", "namedb_delete_prepare", "(", "cur", ",", "primary_key", ",", "primary_key_value", ",", "table_name", ")", ":", "# primary key corresponds to a real column ", "namedb_assert_fields_match", "(", "cur", ",", "{", "primary_key", ":", "primary_key_value", "}", ",", "...

37.625

0.012966

def fmt_datetime(d, fmt='', local=True): """ format date with local support ``d``: datetime to format ``fmt``: format, default is '%Y-%m-%d %H-%M' ``local``: format as local time """ if not d: return '' if local: from django.templatetags.tz import localtime d = lo...

[ "def", "fmt_datetime", "(", "d", ",", "fmt", "=", "''", ",", "local", "=", "True", ")", ":", "if", "not", "d", ":", "return", "''", "if", "local", ":", "from", "django", ".", "templatetags", ".", "tz", "import", "localtime", "d", "=", "localtime", ...

26

0.002475

def plot_world_with_plotly(world, species_list=None, max_count=1000): """ Plot a World on IPython Notebook """ if isinstance(world, str): from .simulation import load_world world = load_world(world) if species_list is None: species_list = [sp.serial() for sp in world.list_sp...

[ "def", "plot_world_with_plotly", "(", "world", ",", "species_list", "=", "None", ",", "max_count", "=", "1000", ")", ":", "if", "isinstance", "(", "world", ",", "str", ")", ":", "from", ".", "simulation", "import", "load_world", "world", "=", "load_world", ...

29.446809

0.000699

def get_open_func(fn, return_fmt=False): """Get the opening function. Args: fn (str): the name of the file. return_fmt (bool): if the file format needs to be returned. Returns: tuple: either a tuple containing two elements: a boolean telling if the format is bgzip, and the ...

[ "def", "get_open_func", "(", "fn", ",", "return_fmt", "=", "False", ")", ":", "# The file might be compressed using bgzip", "bgzip", "=", "None", "with", "open", "(", "fn", ",", "\"rb\"", ")", "as", "i_file", ":", "bgzip", "=", "i_file", ".", "read", "(", ...

25.358974

0.000974

def create_asymmetric_key_pair(self, algorithm, length): """ Create an asymmetric key pair. Args: algorithm(CryptographicAlgorithm): An enumeration specifying the algorithm for which the created keys will be compliant. length(int): The length of the keys ...

[ "def", "create_asymmetric_key_pair", "(", "self", ",", "algorithm", ",", "length", ")", ":", "if", "algorithm", "not", "in", "self", ".", "_asymmetric_key_algorithms", ".", "keys", "(", ")", ":", "raise", "exceptions", ".", "InvalidField", "(", "\"The cryptograp...

42.540541

0.001242

def split_writable_text(encoder, text, encoding): """Splits off as many characters from the begnning of text as are writable with "encoding". Returns a 2-tuple (writable, rest). """ if not encoding: return None, text for idx, char in enumerate(text): if encoder.can_encode(encoding, ...

[ "def", "split_writable_text", "(", "encoder", ",", "text", ",", "encoding", ")", ":", "if", "not", "encoding", ":", "return", "None", ",", "text", "for", "idx", ",", "char", "in", "enumerate", "(", "text", ")", ":", "if", "encoder", ".", "can_encode", ...

30.461538

0.002451

def create_data_file_attachment(self, identifier, resource_id, filename, mime_type=None): """Attach a given data file with a model run. The attached file is identified by the resource identifier. If a resource with the given identifier already exists it will be overwritten. This operati...

[ "def", "create_data_file_attachment", "(", "self", ",", "identifier", ",", "resource_id", ",", "filename", ",", "mime_type", "=", "None", ")", ":", "# Get model run to ensure that it exists", "model_run", "=", "self", ".", "get_object", "(", "identifier", ")", "if",...

43.945946

0.001203

def parse_method_configs(interface_config): """Creates default retry and timeout objects for each method in a gapic interface config. Args: interface_config (Mapping): The interface config section of the full gapic library config. For example, If the full configuration has a...

[ "def", "parse_method_configs", "(", "interface_config", ")", ":", "# Grab all the retry codes", "retry_codes_map", "=", "{", "name", ":", "retry_codes", "for", "name", ",", "retry_codes", "in", "six", ".", "iteritems", "(", "interface_config", ".", "get", "(", "\"...

35.272727

0.002006

def _get_gecos(name): ''' Retrieve GECOS field info and return it in dictionary form ''' gecos_field = pwd.getpwnam(name).pw_gecos.split(',', 3) if not gecos_field: return {} else: # Assign empty strings for any unspecified trailing GECOS fields while len(gecos_field) < 4...

[ "def", "_get_gecos", "(", "name", ")", ":", "gecos_field", "=", "pwd", ".", "getpwnam", "(", "name", ")", ".", "pw_gecos", ".", "split", "(", "','", ",", "3", ")", "if", "not", "gecos_field", ":", "return", "{", "}", "else", ":", "# Assign empty string...

38.8

0.001678

def _determine_outliers_index(hist: Hist, moving_average_threshold: float = 1.0, number_of_values_to_search_ahead: int = 5, limit_of_number_of_values_below_threshold: int = None) -> int: """ Determine the location of where out...

[ "def", "_determine_outliers_index", "(", "hist", ":", "Hist", ",", "moving_average_threshold", ":", "float", "=", "1.0", ",", "number_of_values_to_search_ahead", ":", "int", "=", "5", ",", "limit_of_number_of_values_below_threshold", ":", "int", "=", "None", ")", "-...

49.728571

0.009014

def ecef2geodetic(x: float, y: float, z: float, ell: Ellipsoid = None, deg: bool = True) -> Tuple[float, float, float]: """ convert ECEF (meters) to geodetic coordinates Parameters ---------- x : float or numpy.ndarray of float target x ECEF coordinate (meters) y : flo...

[ "def", "ecef2geodetic", "(", "x", ":", "float", ",", "y", ":", "float", ",", "z", ":", "float", ",", "ell", ":", "Ellipsoid", "=", "None", ",", "deg", ":", "bool", "=", "True", ")", "->", "Tuple", "[", "float", ",", "float", ",", "float", "]", ...

26.468354

0.002305

def _write_move_counts(self, sess, h): """Add move counts from the given histogram to the table. Used to update the move counts in an existing table. Should not be needed except for backfill or repair. Args: sess: TF session to use for doing a Bigtable write. tf_t...

[ "def", "_write_move_counts", "(", "self", ",", "sess", ",", "h", ")", ":", "def", "gen", "(", ")", ":", "for", "k", ",", "v", "in", "h", ".", "items", "(", ")", ":", "# The keys in the histogram may be of type 'bytes'", "k", "=", "str", "(", "k", ",", ...

42.833333

0.001903

def update_sg(self, context, sg, rule_id, action): """Begins the async update process.""" db_sg = db_api.security_group_find(context, id=sg, scope=db_api.ONE) if not db_sg: return None with context.session.begin(): job_body = dict(action="%s sg rule %s" % (action,...

[ "def", "update_sg", "(", "self", ",", "context", ",", "sg", ",", "rule_id", ",", "action", ")", ":", "db_sg", "=", "db_api", ".", "security_group_find", "(", "context", ",", "id", "=", "sg", ",", "scope", "=", "db_api", ".", "ONE", ")", "if", "not", ...

47.222222

0.002307

def get_raw(self): """ Get the reconstructed code as bytearray :rtype: bytearray """ code_raw = self.code.get_raw() self.insns_size = (len(code_raw) // 2) + (len(code_raw) % 2) buff = bytearray() buff += pack("<H", self.registers_size) + \ ...

[ "def", "get_raw", "(", "self", ")", ":", "code_raw", "=", "self", ".", "code", ".", "get_raw", "(", ")", "self", ".", "insns_size", "=", "(", "len", "(", "code_raw", ")", "//", "2", ")", "+", "(", "len", "(", "code_raw", ")", "%", "2", ")", "bu...

29.814815

0.009627

def _get_collection(self, collection_uri, request_headers=None): """Generator function that returns collection members.""" # get the collection status, headers, thecollection = self._rest_get(collection_uri) if status != 200: msg = self._get_extended_error(thecollection) ...

[ "def", "_get_collection", "(", "self", ",", "collection_uri", ",", "request_headers", "=", "None", ")", ":", "# get the collection", "status", ",", "headers", ",", "thecollection", "=", "self", ".", "_rest_get", "(", "collection_uri", ")", "if", "status", "!=", ...

47.465517

0.000712

def cli(env, identifier, enabled, port, weight, healthcheck_type, ip_address): """Edit the properties of a service group.""" mgr = SoftLayer.LoadBalancerManager(env.client) loadbal_id, service_id = loadbal.parse_id(identifier) # check if any input is provided if ((not any([ip_address, weight, por...

[ "def", "cli", "(", "env", ",", "identifier", ",", "enabled", ",", "port", ",", "weight", ",", "healthcheck_type", ",", "ip_address", ")", ":", "mgr", "=", "SoftLayer", ".", "LoadBalancerManager", "(", "env", ".", "client", ")", "loadbal_id", ",", "service_...

36.607143

0.000951

def next(self, Class=True, scope=True, reverse=False): """Returns the next element, if it is of the specified type and if it does not cross the boundary of the defined scope. Returns None if no next element is found. Non-authoritative elements are never returned. Arguments: * ``Class``: The...

[ "def", "next", "(", "self", ",", "Class", "=", "True", ",", "scope", "=", "True", ",", "reverse", "=", "False", ")", ":", "if", "Class", "is", "True", ":", "Class", "=", "self", ".", "__class__", "if", "scope", "is", "True", ":", "scope", "=", "S...

56.551724

0.012886

def get_html(self, url, params=None, cache_cb=None, decoder_encoding=None, decoder_errors=url_specified_decoder.ErrorsHandle.strict, **kwargs): """ Get html of an url. """ response = sel...

[ "def", "get_html", "(", "self", ",", "url", ",", "params", "=", "None", ",", "cache_cb", "=", "None", ",", "decoder_encoding", "=", "None", ",", "decoder_errors", "=", "url_specified_decoder", ".", "ErrorsHandle", ".", "strict", ",", "*", "*", "kwargs", ")...

27.772727

0.012658

def write(self, output_buffer, kmip_version=enums.KMIPVersion.KMIP_1_0): """ Write the data encoding the Create response payload to a buffer. Args: output_buffer (stream): A data buffer in which to encode object data, supporting a write method. kmip_versi...

[ "def", "write", "(", "self", ",", "output_buffer", ",", "kmip_version", "=", "enums", ".", "KMIPVersion", ".", "KMIP_1_0", ")", ":", "local_buffer", "=", "utils", ".", "BytearrayStream", "(", ")", "if", "self", ".", "_object_type", ":", "self", ".", "_obje...

35.145833

0.001153

def init_c_overturn(step): """Initial concentration. This compute the resulting composition profile if fractional crystallization of a SMO is assumed. Args: step (:class:`~stagpy.stagyydata._Step`): a step of a StagyyData instance. Returns: tuple of :class:`numpy.array`...

[ "def", "init_c_overturn", "(", "step", ")", ":", "rbot", ",", "rtop", "=", "misc", ".", "get_rbounds", "(", "step", ")", "xieut", "=", "step", ".", "sdat", ".", "par", "[", "'tracersin'", "]", "[", "'fe_eut'", "]", "k_fe", "=", "step", ".", "sdat", ...

32

0.000948

def download_url_to_path(self, url, path, force=False): """ Download a file from url via http, and put it at path Parameters ---------- url : str URL of file to download path : str local path to put file in """ path_exists = isf...

[ "def", "download_url_to_path", "(", "self", ",", "url", ",", "path", ",", "force", "=", "False", ")", ":", "path_exists", "=", "isfile", "(", "path", ")", "if", "not", "path_exists", "or", "force", ":", "dir", "=", "dirname", "(", "path", ")", "if", ...

31.931034

0.002095

def bytes_from_readable_size(C, size, suffix='B'): """given a readable_size (as produced by File.readable_size()), return the number of bytes.""" s = re.split("^([0-9\.]+)\s*([%s]?)%s?" % (''.join(C.SIZE_UNITS), suffix), size, flags=re.I) bytes, unit = round(float(s[1])), s[2].upper() wh...

[ "def", "bytes_from_readable_size", "(", "C", ",", "size", ",", "suffix", "=", "'B'", ")", ":", "s", "=", "re", ".", "split", "(", "\"^([0-9\\.]+)\\s*([%s]?)%s?\"", "%", "(", "''", ".", "join", "(", "C", ".", "SIZE_UNITS", ")", ",", "suffix", ")", ",", ...

60

0.01232

def delete(self): " Delete the address." response = self.dyn.delete(self.delete_url) return response.content['job_id']

[ "def", "delete", "(", "self", ")", ":", "response", "=", "self", ".", "dyn", ".", "delete", "(", "self", ".", "delete_url", ")", "return", "response", ".", "content", "[", "'job_id'", "]" ]

34.75

0.014085

def multiifo_noise_coinc_rate(rates, slop): """ Calculate the expected rate of noise coincidences for multiple detectors Parameters ---------- rates: dict Dictionary keyed on ifo string Value is a sequence of single-detector trigger rates, units assumed to be Hz slop: fl...

[ "def", "multiifo_noise_coinc_rate", "(", "rates", ",", "slop", ")", ":", "ifos", "=", "numpy", ".", "array", "(", "sorted", "(", "rates", ".", "keys", "(", ")", ")", ")", "rates_raw", "=", "list", "(", "rates", "[", "ifo", "]", "for", "ifo", "in", ...

37.804348

0.000561

def load(self): """ Load the stream definition from the database :return: None """ with switch_db(StreamDefinitionModel, 'hyperstream'): self.mongo_model = StreamDefinitionModel.objects.get(__raw__=self.stream_id.as_raw()) self._calculated_intervals = sel...

[ "def", "load", "(", "self", ")", ":", "with", "switch_db", "(", "StreamDefinitionModel", ",", "'hyperstream'", ")", ":", "self", ".", "mongo_model", "=", "StreamDefinitionModel", ".", "objects", ".", "get", "(", "__raw__", "=", "self", ".", "stream_id", ".",...

39.111111

0.011111

def export_chat_invite_link(self, *args, **kwargs): """See :func:`export_chat_invite_link`""" return export_chat_invite_link(*args, **self._merge_overrides(**kwargs)).run()

[ "def", "export_chat_invite_link", "(", "self", ",", "*", "args", ",", "*", "*", "kwargs", ")", ":", "return", "export_chat_invite_link", "(", "*", "args", ",", "*", "*", "self", ".", "_merge_overrides", "(", "*", "*", "kwargs", ")", ")", ".", "run", "(...

62

0.015957

def map(self, fn, *iterables, **kwargs): """Returns an iterator equivalent to map(fn, iter). Args: fn: A callable that will take as many arguments as there are passed iterables. timeout: The maximum number of seconds to wait. If None, then there i...

[ "def", "map", "(", "self", ",", "fn", ",", "*", "iterables", ",", "*", "*", "kwargs", ")", ":", "timeout", "=", "kwargs", ".", "get", "(", "'timeout'", ",", "None", ")", "chunksize", "=", "kwargs", ".", "get", "(", "'chunksize'", ",", "1", ")", "...

42.16129

0.001496

def get_words(data): """ Extracts the words from given string. Usage:: >>> get_words("Users are: John Doe, Jane Doe, Z6PO.") [u'Users', u'are', u'John', u'Doe', u'Jane', u'Doe', u'Z6PO'] :param data: Data to extract words from. :type data: unicode :return: Words. :rtype: l...

[ "def", "get_words", "(", "data", ")", ":", "words", "=", "re", ".", "findall", "(", "r\"\\w+\"", ",", "data", ")", "LOGGER", ".", "debug", "(", "\"> Words: '{0}'\"", ".", "format", "(", "\", \"", ".", "join", "(", "words", ")", ")", ")", "return", "w...

23.833333

0.002242

def invert(image): """Return an inverted image of the same dtype. Assumes the full range of the input dtype is in use and that no negative values are present in the input image. :param image: :class:`jicbioimage.core.image.Image` :returns: inverted image of the same dtype as the input """ ...

[ "def", "invert", "(", "image", ")", ":", "if", "image", ".", "dtype", "==", "bool", ":", "return", "np", ".", "logical_not", "(", "image", ")", "maximum", "=", "np", ".", "iinfo", "(", "image", ".", "dtype", ")", ".", "max", "maximum_array", "=", "...

36.428571

0.001912

def parser(description=None, usage=None): """Parse out command line arguments""" class ArgNamespace(object): def __init__(self, result): self._result = result def __getattr__(self, name): try: super(ArgNamespace, self).__getattr__(name) excep...

[ "def", "parser", "(", "description", "=", "None", ",", "usage", "=", "None", ")", ":", "class", "ArgNamespace", "(", "object", ")", ":", "def", "__init__", "(", "self", ",", "result", ")", ":", "self", ".", "_result", "=", "result", "def", "__getattr__...

31.857143

0.000544

def filter_service_by_host_tag_name(tpl): """Filter for service Filter on tag :param tpl: tag to filter :type tpl: str :return: Filter :rtype: bool """ def inner_filter(items): """Inner filter for service. Accept if tpl in service.host.tags""" service = items["service"]...

[ "def", "filter_service_by_host_tag_name", "(", "tpl", ")", ":", "def", "inner_filter", "(", "items", ")", ":", "\"\"\"Inner filter for service. Accept if tpl in service.host.tags\"\"\"", "service", "=", "items", "[", "\"service\"", "]", "host", "=", "items", "[", "\"hos...

25.947368

0.001957

def job_data(job_id): '''Get the raw data that the job returned. The mimetype will be the value provided in the metdata for the key ``mimetype``. **Results:** :rtype: string :statuscode 200: no error :statuscode 403: not authorized to view the job's data :statuscode 404: job id not found ...

[ "def", "job_data", "(", "job_id", ")", ":", "job_dict", "=", "db", ".", "get_job", "(", "job_id", ")", "if", "not", "job_dict", ":", "return", "json", ".", "dumps", "(", "{", "'error'", ":", "'job_id not found'", "}", ")", ",", "404", ",", "headers", ...

36.136364

0.001225

def seasons(ephemeris): """Build a function of time that returns the quarter of the year. The function that this returns will expect a single argument that is a :class:`~skyfield.timelib.Time` and will return 0 through 3 for the seasons Spring, Summer, Autumn, and Winter. """ earth = ephemeris...

[ "def", "seasons", "(", "ephemeris", ")", ":", "earth", "=", "ephemeris", "[", "'earth'", "]", "sun", "=", "ephemeris", "[", "'sun'", "]", "def", "season_at", "(", "t", ")", ":", "\"\"\"Return season 0 (Spring) through 3 (Winter) at time `t`.\"\"\"", "t", ".", "_...

34.25

0.00142

def create(self, key, *args, **kwargs): """ Creates and inserts an identified object with the passed params using the specified class. """ instance = self._class(key, *args, **kwargs) self._events.create.trigger(list=self, instance=instance, key=key, args=args, kwargs...

[ "def", "create", "(", "self", ",", "key", ",", "*", "args", ",", "*", "*", "kwargs", ")", ":", "instance", "=", "self", ".", "_class", "(", "key", ",", "*", "args", ",", "*", "*", "kwargs", ")", "self", ".", "_events", ".", "create", ".", "trig...

44.75

0.008219

def update(self, params, path, **kwargs): """ Test Update :param params: :param path: :param random: """ self.client.request('POST', params, path, **kwargs)

[ "def", "update", "(", "self", ",", "params", ",", "path", ",", "*", "*", "kwargs", ")", ":", "self", ".", "client", ".", "request", "(", "'POST'", ",", "params", ",", "path", ",", "*", "*", "kwargs", ")" ]

25.625

0.009434

def check_for_old_config(ipython_dir=None): """Check for old config files, and present a warning if they exist. A link to the docs of the new config is included in the message. This should mitigate confusion with the transition to the new config system in 0.11. """ if ipython_dir is None: ...

[ "def", "check_for_old_config", "(", "ipython_dir", "=", "None", ")", ":", "if", "ipython_dir", "is", "None", ":", "ipython_dir", "=", "get_ipython_dir", "(", ")", "old_configs", "=", "[", "'ipy_user_conf.py'", ",", "'ipythonrc'", ",", "'ipython_config.py'", "]", ...

40.6875

0.002251

def setup_installed_apps(cls): """ To import 3rd party applications along with associated properties It is a list of dict or string. When a dict, it contains the `app` key and the configuration, if it's a string, it is just the app name If you require dependencies from...

[ "def", "setup_installed_apps", "(", "cls", ")", ":", "cls", ".", "_installed_apps", "=", "cls", ".", "_app", ".", "config", ".", "get", "(", "\"INSTALLED_APPS\"", ",", "[", "]", ")", "if", "cls", ".", "_installed_apps", ":", "def", "import_app", "(", "mo...

36.166667

0.001923

def qplane(qplane_tile_dict, fseries, return_complex=False): """Performs q-transform on each tile for each q-plane and selects tile with the maximum energy. Q-transform can then be interpolated to a desired frequency and time resolution. Parameters ---------- qplane_tile_dict: Dic...

[ "def", "qplane", "(", "qplane_tile_dict", ",", "fseries", ",", "return_complex", "=", "False", ")", ":", "# store q-transforms for each q in a dict", "qplanes", "=", "{", "}", "max_energy", ",", "max_key", "=", "None", ",", "None", "for", "i", ",", "q", "in", ...

34.617021

0.000598

def get_data(name, train_batch_size, test_batch_size): """Gets training and testing dataset iterators. Args: name: String. Name of dataset, either 'mnist' or 'cifar10'. train_batch_size: Integer. Batch size for training. test_batch_size: Integer. Batch size for testing. Returns: Dict containing:...

[ "def", "get_data", "(", "name", ",", "train_batch_size", ",", "test_batch_size", ")", ":", "if", "name", "not", "in", "[", "'mnist'", ",", "'cifar10'", "]", ":", "raise", "ValueError", "(", "'Expected dataset \\'mnist\\' or \\'cifar10\\', but got %s'", "%", "name", ...

36.185185

0.011958

def check_exists(self): ''' Check if resource exists, update self.exists, returns Returns: None: sets self.exists ''' response = self.repo.api.http_request('HEAD', self.uri) self.status_code = response.status_code # resource exists if self.status_code == 200: self.exists = True # resource no ...

[ "def", "check_exists", "(", "self", ")", ":", "response", "=", "self", ".", "repo", ".", "api", ".", "http_request", "(", "'HEAD'", ",", "self", ".", "uri", ")", "self", ".", "status_code", "=", "response", ".", "status_code", "# resource exists", "if", ...

22.142857

0.039175

def with_pivot(self, *columns): """ Set the columns on the pivot table to retrieve. """ columns = list(columns) self._pivot_columns += columns return self

[ "def", "with_pivot", "(", "self", ",", "*", "columns", ")", ":", "columns", "=", "list", "(", "columns", ")", "self", ".", "_pivot_columns", "+=", "columns", "return", "self" ]

21.777778

0.009804

def readSAM(SAMfile,header=False): """ Reads and parses a sam file. :param SAMfile: /path/to/file.sam :param header: logical, if True, reads the header information :returns: a pandas dataframe with the respective SAM columns: 'QNAME','FLAG','RNAME','POS','MAPQ','CIGAR','RNEXT','PNEXT','TLEN','SEQ'...

[ "def", "readSAM", "(", "SAMfile", ",", "header", "=", "False", ")", ":", "if", "header", "==", "True", ":", "f", "=", "open", "(", "SAMfile", ",", "\"r+\"", ")", "head", "=", "[", "]", "for", "line", "in", "f", ".", "readlines", "(", ")", ":", ...

31.179487

0.038278

def timestamp_YmdHMS(value): """Convert timestamp string to time in seconds since epoch. Timestamps strings like '20130618120000' are able to be converted by this function. Args: value: A timestamp string in the format '%Y%m%d%H%M%S'. Returns: The time in seconds since epoch as an...

[ "def", "timestamp_YmdHMS", "(", "value", ")", ":", "i", "=", "int", "(", "value", ")", "S", "=", "i", "M", "=", "S", "//", "100", "H", "=", "M", "//", "100", "d", "=", "H", "//", "100", "m", "=", "d", "//", "100", "Y", "=", "m", "//", "10...

23.555556

0.001511

def setattr(self, key, value): """ This method sets attribute of a Managed Object. """ if (UcsUtils.FindClassIdInMoMetaIgnoreCase(self.classId) != None): if (key in _ManagedObjectMeta[self.classId]): propMeta = UcsUtils.GetUcsPropertyMeta(self.classId, key) if (propMeta.ValidatePropertyValue(value) == F...

[ "def", "setattr", "(", "self", ",", "key", ",", "value", ")", ":", "if", "(", "UcsUtils", ".", "FindClassIdInMoMetaIgnoreCase", "(", "self", ".", "classId", ")", "!=", "None", ")", ":", "if", "(", "key", "in", "_ManagedObjectMeta", "[", "self", ".", "c...

32.421053

0.031546

def mimf_ferrario(mi): ''' Curvature MiMf from Ferrario etal. 2005MNRAS.361.1131.''' mf=-0.00012336*mi**6+0.003160*mi**5-0.02960*mi**4+\ 0.12350*mi**3-0.21550*mi**2+0.19022*mi+0.46575 return mf

[ "def", "mimf_ferrario", "(", "mi", ")", ":", "mf", "=", "-", "0.00012336", "*", "mi", "**", "6", "+", "0.003160", "*", "mi", "**", "5", "-", "0.02960", "*", "mi", "**", "4", "+", "0.12350", "*", "mi", "**", "3", "-", "0.21550", "*", "mi", "**",...

35.166667

0.023148

def _get_result_constructor(self): """ Returns a function that will be used to instantiate query results """ if not self._values_list: # we want models return lambda rows: self.model._construct_instance(rows) elif self._flat_values_list: # the user has requested flattened list (1 val...

[ "def", "_get_result_constructor", "(", "self", ")", ":", "if", "not", "self", ".", "_values_list", ":", "# we want models", "return", "lambda", "rows", ":", "self", ".", "model", ".", "_construct_instance", "(", "rows", ")", "elif", "self", ".", "_flat_values_...

58.25

0.012685

def request(self, method, url, access_token=None, **kwargs): """ 向微信服务器发送请求 :param method: 请求方法 :param url: 请求地址 :param access_token: access token 值, 如果初始化时传入 conf 会自动获取, 如果没有传入则请提供此值 :param kwargs: 附加数据 :return: 微信服务器响应的 JSON 数据 """ access_token =...

[ "def", "request", "(", "self", ",", "method", ",", "url", ",", "access_token", "=", "None", ",", "*", "*", "kwargs", ")", ":", "access_token", "=", "self", ".", "__conf", ".", "access_token", "if", "self", ".", "__conf", "is", "not", "None", "else", ...

32.692308

0.002285

def Freqs(self,jr,jphi,jz,**kwargs): """ NAME: Freqs PURPOSE: return the frequencies corresponding to a torus INPUT: jr - radial action (scalar) jphi - azimuthal action (scalar) jz - vertical action (scalar) tol= (...

[ "def", "Freqs", "(", "self", ",", "jr", ",", "jphi", ",", "jz", ",", "*", "*", "kwargs", ")", ":", "out", "=", "actionAngleTorus_c", ".", "actionAngleTorus_Freqs_c", "(", "self", ".", "_pot", ",", "jr", ",", "jphi", ",", "jz", ",", "tol", "=", "kwa...

22.567568

0.014925

def put_group_policy(group_name, policy_name, policy_json, region=None, key=None, keyid=None, profile=None): ''' Adds or updates the specified policy document for the specified group. .. versionadded:: 2015.8.0 CLI Example: .. code-block:: bash salt myminion boto_iam...

[ "def", "put_group_policy", "(", "group_name", ",", "policy_name", ",", "policy_json", ",", "region", "=", "None", ",", "key", "=", "None", ",", "keyid", "=", "None", ",", "profile", "=", "None", ")", ":", "group", "=", "get_group", "(", "group_name", ","...

38.09375

0.0016

def min_weighted_vertex_cover(G, weight=None, sampler=None, **sampler_args): """Returns an approximate minimum weighted vertex cover. Defines a QUBO with ground states corresponding to a minimum weighted vertex cover and uses the sampler to sample from it. A vertex cover is a set of vertices such that...

[ "def", "min_weighted_vertex_cover", "(", "G", ",", "weight", "=", "None", ",", "sampler", "=", "None", ",", "*", "*", "sampler_args", ")", ":", "indep_nodes", "=", "set", "(", "maximum_weighted_independent_set", "(", "G", ",", "weight", ",", "sampler", ",", ...

36.527273

0.000969

def _to_json_type(obj, classkey=None): """ Recursively convert the object instance into a valid JSON type. """ if isinstance(obj, dict): data = {} for (k, v) in obj.items(): data[k] = _to_json_type(v, classkey) return data elif hasattr(obj, "_ast"): return _to...

[ "def", "_to_json_type", "(", "obj", ",", "classkey", "=", "None", ")", ":", "if", "isinstance", "(", "obj", ",", "dict", ")", ":", "data", "=", "{", "}", "for", "(", "k", ",", "v", ")", "in", "obj", ".", "items", "(", ")", ":", "data", "[", "...

35.304348

0.001199

def validateOneElement(self, ctxt, elem): """Try to validate a single element and it's attributes, basically it does the following checks as described by the XML-1.0 recommendation: - [ VC: Element Valid ] - [ VC: Required Attribute ] Then call xmlValidateOneAttribute() f...

[ "def", "validateOneElement", "(", "self", ",", "ctxt", ",", "elem", ")", ":", "if", "ctxt", "is", "None", ":", "ctxt__o", "=", "None", "else", ":", "ctxt__o", "=", "ctxt", ".", "_o", "if", "elem", "is", "None", ":", "elem__o", "=", "None", "else", ...

48.461538

0.009346

def run(self, stdout_func = None, stdin_func = None, stderr_func = None): """Runs the process, using the provided functions for I/O. The function stdin_func should return strings whenever a character or characters become available. The functions stdout_func and stderr_func are called wh...

[ "def", "run", "(", "self", ",", "stdout_func", "=", "None", ",", "stdin_func", "=", "None", ",", "stderr_func", "=", "None", ")", ":", "if", "stdout_func", "==", "None", "and", "stdin_func", "==", "None", "and", "stderr_func", "==", "None", ":", "return"...

44.68

0.00876

def p_let_arr_substr_in_args2(p): """ statement : LET ARRAY_ID LP arguments COMMA TO expr RP EQ expr | ARRAY_ID LP arguments COMMA TO expr RP EQ expr """ i = 2 if p[1].upper() == 'LET' else 1 id_ = p[i] arg_list = p[i + 2] top_ = p[i + 5] substr = (make_number(0, lineno=p....

[ "def", "p_let_arr_substr_in_args2", "(", "p", ")", ":", "i", "=", "2", "if", "p", "[", "1", "]", ".", "upper", "(", ")", "==", "'LET'", "else", "1", "id_", "=", "p", "[", "i", "]", "arg_list", "=", "p", "[", "i", "+", "2", "]", "top_", "=", ...

35.833333

0.002268

def read_crn(filename): """ Read NOAA USCRN [1]_ [2]_ fixed-width file into pandas dataframe. Parameters ---------- filename: str filepath or url to read for the fixed-width file. Returns ------- data: Dataframe A dataframe with DatetimeIndex and all of the variables in...

[ "def", "read_crn", "(", "filename", ")", ":", "# read in data", "data", "=", "pd", ".", "read_fwf", "(", "filename", ",", "header", "=", "None", ",", "names", "=", "HEADERS", ".", "split", "(", "' '", ")", ",", "widths", "=", "WIDTHS", ")", "# loop her...

33.203125

0.000457

def independent_data(self): """ Read-only Property :return: Data belonging to each independent variable as a dict with variable names as key, data as value. :rtype: collections.OrderedDict """ return OrderedDict((var, self.data[var]) for var in self.mode...

[ "def", "independent_data", "(", "self", ")", ":", "return", "OrderedDict", "(", "(", "var", ",", "self", ".", "data", "[", "var", "]", ")", "for", "var", "in", "self", ".", "model", ".", "independent_vars", ")" ]

36.777778

0.00885

def imagej_metadata_tag(metadata, byteorder): """Return IJMetadata and IJMetadataByteCounts tags from metadata dict. The tags can be passed to the TiffWriter.save function as extratags. The metadata dict may contain the following keys and values: Info : str Human-readable information ...

[ "def", "imagej_metadata_tag", "(", "metadata", ",", "byteorder", ")", ":", "header", "=", "[", "{", "'>'", ":", "b'IJIJ'", ",", "'<'", ":", "b'JIJI'", "}", "[", "byteorder", "]", "]", "bytecounts", "=", "[", "0", "]", "body", "=", "[", "]", "def", ...

32.12

0.000403

def add(self, field, val): "Add a sample" if engine.FieldDefinition.FIELDS[field]._matcher is matching.TimeFilter: val = self._basetime - val try: self.total[field] += val self.min[field] = min(self.min[field], val) if field in self.min else val s...

[ "def", "add", "(", "self", ",", "field", ",", "val", ")", ":", "if", "engine", ".", "FieldDefinition", ".", "FIELDS", "[", "field", "]", ".", "_matcher", "is", "matching", ".", "TimeFilter", ":", "val", "=", "self", ".", "_basetime", "-", "val", "try...

38.909091

0.009132

def check_archs(copied_libs, require_archs=(), stop_fast=False): """ Check compatibility of archs in `copied_libs` dict Parameters ---------- copied_libs : dict dict containing the (key, value) pairs of (``copied_lib_path``, ``dependings_dict``), where ``copied_lib_path`` is a library r...

[ "def", "check_archs", "(", "copied_libs", ",", "require_archs", "=", "(", ")", ",", "stop_fast", "=", "False", ")", ":", "if", "isinstance", "(", "require_archs", ",", "string_types", ")", ":", "require_archs", "=", "(", "[", "'i386'", ",", "'x86_64'", "]"...

50.05

0.000327

def _place_order(self, side, product_id='BTC-USD', client_oid=None, type=None, stp=None, price=None, size=None, funds=None, time_in_force=None, ...

[ "def", "_place_order", "(", "self", ",", "side", ",", "product_id", "=", "'BTC-USD'", ",", "client_oid", "=", "None", ",", "type", "=", "None", ",", "stp", "=", "None", ",", "price", "=", "None", ",", "size", "=", "None", ",", "funds", "=", "None", ...

28.148148

0.029262

def fast_comp(seq1, seq2, transpositions=False): """Compute the distance between the two sequences `seq1` and `seq2` up to a maximum of 2 included, and return it. If the edit distance between the two sequences is higher than that, -1 is returned. If `transpositions` is `True`, transpositions will be taken into ac...

[ "def", "fast_comp", "(", "seq1", ",", "seq2", ",", "transpositions", "=", "False", ")", ":", "replace", ",", "insert", ",", "delete", "=", "\"r\"", ",", "\"i\"", ",", "\"d\"", "L1", ",", "L2", "=", "len", "(", "seq1", ")", ",", "len", "(", "seq2", ...

22.775

0.044187

def _format_envvar(param): """Format the envvars of a `click.Option` or `click.Argument`.""" yield '.. envvar:: {}'.format(param.envvar) yield ' :noindex:' yield '' if isinstance(param, click.Argument): param_ref = param.human_readable_name else: # if a user has defined an opt ...

[ "def", "_format_envvar", "(", "param", ")", ":", "yield", "'.. envvar:: {}'", ".", "format", "(", "param", ".", "envvar", ")", "yield", "' :noindex:'", "yield", "''", "if", "isinstance", "(", "param", ",", "click", ".", "Argument", ")", ":", "param_ref", ...

40.923077

0.001838

def uid(self, p_todo): """ Returns the unique text-based ID for a todo item. """ try: return self._todo_id_map[p_todo] except KeyError as ex: raise InvalidTodoException from ex

[ "def", "uid", "(", "self", ",", "p_todo", ")", ":", "try", ":", "return", "self", ".", "_todo_id_map", "[", "p_todo", "]", "except", "KeyError", "as", "ex", ":", "raise", "InvalidTodoException", "from", "ex" ]

29.125

0.008333

def _make_zipfile(base_name, base_dir, verbose=0, dry_run=0, logger=None): """Create a zip file from all the files under 'base_dir'. The output zip file will be named 'base_name' + ".zip". Uses either the "zipfile" Python module (if available) or the InfoZIP "zip" utility (if installed and found on th...

[ "def", "_make_zipfile", "(", "base_name", ",", "base_dir", ",", "verbose", "=", "0", ",", "dry_run", "=", "0", ",", "logger", "=", "None", ")", ":", "zip_filename", "=", "base_name", "+", "\".zip\"", "archive_dir", "=", "os", ".", "path", ".", "dirname",...

36.108696

0.000586

def _parse_pet_record(self, root): """ Given a <pet> Element from a pet.get or pet.getRandom response, pluck out the pet record. :param lxml.etree._Element root: A <pet> tag Element. :rtype: dict :returns: An assembled pet record. """ record = { ...

[ "def", "_parse_pet_record", "(", "self", ",", "root", ")", ":", "record", "=", "{", "\"breeds\"", ":", "[", "]", ",", "\"photos\"", ":", "[", "]", ",", "\"options\"", ":", "[", "]", ",", "\"contact\"", ":", "{", "}", ",", "}", "# These fields can just ...

35.901639

0.000889

def get(self, obj, cls): """ Using the lowercase name of the class as node_type, returns `obj.visit_{node_type}`, or `obj.visit_default` if the type-specific method is not found. """ method = self._cache.get(cls) if not method: name = "visit_" + cls.__name__.lower() method = getattr(...

[ "def", "get", "(", "self", ",", "obj", ",", "cls", ")", ":", "method", "=", "self", ".", "_cache", ".", "get", "(", "cls", ")", "if", "not", "method", ":", "name", "=", "\"visit_\"", "+", "cls", ".", "__name__", ".", "lower", "(", ")", "method", ...

35.363636

0.012531

def _get_raw_objects(self): """ Helper function to populate the first page of raw objects for this tag. This has the side effect of creating the ``_raw_objects`` attribute of this object. """ if not hasattr(self, '_raw_objects'): result = self._client.get(type...

[ "def", "_get_raw_objects", "(", "self", ")", ":", "if", "not", "hasattr", "(", "self", ",", "'_raw_objects'", ")", ":", "result", "=", "self", ".", "_client", ".", "get", "(", "type", "(", "self", ")", ".", "api_endpoint", ",", "model", "=", "self", ...

41.642857

0.008389

def account_block(self, id): """ Block a user. Returns a `relationship dict`_ containing the updated relationship to the user. """ id = self.__unpack_id(id) url = '/api/v1/accounts/{0}/block'.format(str(id)) return self.__api_request('POST', url)

[ "def", "account_block", "(", "self", ",", "id", ")", ":", "id", "=", "self", ".", "__unpack_id", "(", "id", ")", "url", "=", "'/api/v1/accounts/{0}/block'", ".", "format", "(", "str", "(", "id", ")", ")", "return", "self", ".", "__api_request", "(", "'...

32.777778

0.009901

def fingerprints(self, keyhalf='any', keytype='any'): """ List loaded fingerprints with some optional filtering. :param str keyhalf: Can be 'any', 'public', or 'private'. If 'public', or 'private', the fingerprints of keys of the the other type will not be included i...

[ "def", "fingerprints", "(", "self", ",", "keyhalf", "=", "'any'", ",", "keytype", "=", "'any'", ")", ":", "return", "{", "pk", ".", "fingerprint", "for", "pk", "in", "self", ".", "_keys", ".", "values", "(", ")", "if", "pk", ".", "is_primary", "in", ...

67.666667

0.008746

def deleteAttachment(self, oid, attachment_id): """ removes an attachment from a feature service feature Input: oid - integer or string - id of feature attachment_id - integer - id of attachment to erase Output: JSON response """ ...

[ "def", "deleteAttachment", "(", "self", ",", "oid", ",", "attachment_id", ")", ":", "url", "=", "self", ".", "_url", "+", "\"/%s/deleteAttachments\"", "%", "oid", "params", "=", "{", "\"f\"", ":", "\"json\"", ",", "\"attachmentIds\"", ":", "\"%s\"", "%", "...

39.823529

0.010101

def _parse_line_entry(self, line, type): """ Parse a section entry line into its components. In case of a 'vars' section, the first field will be None. Otherwise, the first field will be the unexpanded host or group name the variables apply to. For example: [producti...

[ "def", "_parse_line_entry", "(", "self", ",", "line", ",", "type", ")", ":", "name", "=", "None", "key_values", "=", "{", "}", "if", "type", "==", "'vars'", ":", "key_values", "=", "self", ".", "_parse_line_vars", "(", "line", ")", "else", ":", "tokens...

32.153846

0.002322

def append_transformation(self, transformation, extend_collection=False, clear_redo=True): """ Appends a transformation to all TransformedStructures. Args: transformation: Transformation to append extend_collection: Whether to use more than ...

[ "def", "append_transformation", "(", "self", ",", "transformation", ",", "extend_collection", "=", "False", ",", "clear_redo", "=", "True", ")", ":", "if", "self", ".", "ncores", "and", "transformation", ".", "use_multiprocessing", ":", "p", "=", "Pool", "(", ...

47.609756

0.001506