kejian/codesearchnet-python-rebalanced · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def merge(self, other, reference_seq): '''Tries to merge this VcfRecord with other VcfRecord. Simple example (working in 0-based coords): ref = ACGT var1 = SNP at position 1, C->G var2 = SNP at position 3, T->A then this returns new variant, position=1, REF=CGT, ALT=GGA. ...	[ "def", "merge", "(", "self", ",", "other", ",", "reference_seq", ")", ":", "if", "self", ".", "CHROM", "!=", "other", ".", "CHROM", "or", "self", ".", "intersects", "(", "other", ")", "or", "len", "(", "self", ".", "ALT", ")", "!=", "1", "or", "l...	37.234043	0.00167
def rstrip(self, chars=None): """ Like str.rstrip, except it returns the Colr instance. """ return self.__class__( self._str_strip('rstrip', chars), no_closing=chars and (closing_code in chars), )	[ "def", "rstrip", "(", "self", ",", "chars", "=", "None", ")", ":", "return", "self", ".", "__class__", "(", "self", ".", "_str_strip", "(", "'rstrip'", ",", "chars", ")", ",", "no_closing", "=", "chars", "and", "(", "closing_code", "in", "chars", ")", ...	39.833333	0.008197
def suppress_keyboard_interrupt_message(): """Register a new excepthook to suppress KeyboardInterrupt exception messages, and exit with status code 130. """ old_excepthook = sys.excepthook def new_hook(type, value, traceback): if type != KeyboardInterrupt: old_excepthook(type, ...	[ "def", "suppress_keyboard_interrupt_message", "(", ")", ":", "old_excepthook", "=", "sys", ".", "excepthook", "def", "new_hook", "(", "type", ",", "value", ",", "traceback", ")", ":", "if", "type", "!=", "KeyboardInterrupt", ":", "old_excepthook", "(", "type", ...	28.214286	0.002451
def _align_method_FRAME(left, right, axis): """ convert rhs to meet lhs dims if input is list, tuple or np.ndarray """ def to_series(right): msg = ('Unable to coerce to Series, length must be {req_len}: ' 'given {given_len}') if axis is not None and left._get_axis_name(axis) == '...	[ "def", "_align_method_FRAME", "(", "left", ",", "right", ",", "axis", ")", ":", "def", "to_series", "(", "right", ")", ":", "msg", "=", "(", "'Unable to coerce to Series, length must be {req_len}: '", "'given {given_len}'", ")", "if", "axis", "is", "not", "None", ...	41.472727	0.000428
def clean(self): """Routine to return C/NOFS IVM data cleaned to the specified level Parameters ----------- inst : (pysat.Instrument) Instrument class object, whose attribute clean_level is used to return the desired level of data selectivity. Returns -------- Void : (NoneT...	[ "def", "clean", "(", "self", ")", ":", "# cleans cindi data", "if", "self", ".", "clean_level", "==", "'clean'", ":", "# choose areas below 550km", "# self.data = self.data[self.data.alt <= 550]", "idx", ",", "=", "np", ".", "where", "(", "self", ".", "data", ".",...	32.75	0.010653
def elapsed(self): """ Elapsed time [µs] between start and stop timestamps. If stop is empty then returned time is difference between start and current timestamp. """ if self._stop is None: return timer() - self._start return self._stop - self._start	[ "def", "elapsed", "(", "self", ")", ":", "if", "self", ".", "_stop", "is", "None", ":", "return", "timer", "(", ")", "-", "self", ".", "_start", "return", "self", ".", "_stop", "-", "self", ".", "_start" ]	37.875	0.009677
def convert_to_G(self, word): """ Given a size such as '2333M', return the converted value in G """ value = 0.0 if word[-1] == 'G' or word[-1] == 'g': value = float(word[:-1]) elif word[-1] == 'M' or word[-1] == 'm': value = float(word[:-1]) / 1000.0 elif word[-1] == 'K' or word[...	[ "def", "convert_to_G", "(", "self", ",", "word", ")", ":", "value", "=", "0.0", "if", "word", "[", "-", "1", "]", "==", "'G'", "or", "word", "[", "-", "1", "]", "==", "'g'", ":", "value", "=", "float", "(", "word", "[", ":", "-", "1", "]", ...	33.071429	0.010504
def argmin(input_, key=None): """ Returns index / key of the item with the smallest value. Args: input_ (dict or list): Note: a[argmin(a, key=key)] == min(a, key=key) """ # if isinstance(input_, dict): # return list(input_.keys())[argmin(list(input_.values()))] # el...	[ "def", "argmin", "(", "input_", ",", "key", "=", "None", ")", ":", "# if isinstance(input_, dict):", "# return list(input_.keys())[argmin(list(input_.values()))]", "# elif hasattr(input_, 'index'):", "# return input_.index(min(input_))", "# else:", "# return min(enumerate(i...	29.807692	0.00125
def isBool(self, type): """ is the type a boolean value? :param type: PKCS#11 type like `CKA_ALWAYS_SENSITIVE` :rtype: bool """ if type in (CKA_ALWAYS_SENSITIVE, CKA_DECRYPT, CKA_DERIVE, CKA_ENCRYPT, ...	[ "def", "isBool", "(", "self", ",", "type", ")", ":", "if", "type", "in", "(", "CKA_ALWAYS_SENSITIVE", ",", "CKA_DECRYPT", ",", "CKA_DERIVE", ",", "CKA_ENCRYPT", ",", "CKA_EXTRACTABLE", ",", "CKA_HAS_RESET", ",", "CKA_LOCAL", ",", "CKA_MODIFIABLE", ",", "CKA_NE...	31.032258	0.002016
def then(self, success=None, failure=None): """ This method takes two optional arguments. The first argument is used if the "self promise" is fulfilled and the other is used if the "self promise" is rejected. In either case, this method returns another promise that effectively ...	[ "def", "then", "(", "self", ",", "success", "=", "None", ",", "failure", "=", "None", ")", ":", "ret", "=", "self", ".", "create_next", "(", ")", "def", "callAndFulfill", "(", "v", ")", ":", "\"\"\"\n A callback to be invoked if the \"self promise\"\n...	37.640625	0.000809
def get_reports(): """ Returns energy data from 1960 to 2014 across various factors. """ if False: # If there was a Test version of this method, it would go here. But alas. pass else: rows = _Constants._DATABASE.execute("SELECT data FROM energy".format( hardw...	[ "def", "get_reports", "(", ")", ":", "if", "False", ":", "# If there was a Test version of this method, it would go here. But alas.", "pass", "else", ":", "rows", "=", "_Constants", ".", "_DATABASE", ".", "execute", "(", "\"SELECT data FROM energy\"", ".", "format", "("...	32.333333	0.008016
def get_local_file_dist(self): """ Handle importing from a source archive; this also uses setup_requires but points easy_install directly to the source archive. """ if not os.path.isfile(self.path): return log.info('Attempting to unpack and import astropy_he...	[ "def", "get_local_file_dist", "(", "self", ")", ":", "if", "not", "os", ".", "path", ".", "isfile", "(", "self", ".", "path", ")", ":", "return", "log", ".", "info", "(", "'Attempting to unpack and import astropy_helpers from '", "'{0!r}'", ".", "format", "(",...	32.677419	0.001918
def get_definition_location(self): """Returns a (module, lineno) tuple""" if self.lineno is None and self.assignments: self.lineno = self.assignments[0].get_lineno() return (self.module, self.lineno)	[ "def", "get_definition_location", "(", "self", ")", ":", "if", "self", ".", "lineno", "is", "None", "and", "self", ".", "assignments", ":", "self", ".", "lineno", "=", "self", ".", "assignments", "[", "0", "]", ".", "get_lineno", "(", ")", "return", "(...	46.2	0.008511
def _evaluate(self,x,return_indices = False): ''' Returns the level of the interpolated function at each value in x. Only called internally by HARKinterpolator1D.__call__ (etc). ''' return self._evalOrDer(x,True,False)[0]	[ "def", "_evaluate", "(", "self", ",", "x", ",", "return_indices", "=", "False", ")", ":", "return", "self", ".", "_evalOrDer", "(", "x", ",", "True", ",", "False", ")", "[", "0", "]" ]	42.833333	0.034351
def render_query(dataset, tables, select=None, conditions=None, groupings=None, having=None, order_by=None, limit=None): """Render a query that will run over the given tables using the specified parameters. Parameters ---------- dataset : str The BigQuery dataset to query d...	[ "def", "render_query", "(", "dataset", ",", "tables", ",", "select", "=", "None", ",", "conditions", "=", "None", ",", "groupings", "=", "None", ",", "having", "=", "None", ",", "order_by", "=", "None", ",", "limit", "=", "None", ")", ":", "if", "Non...	38.339623	0.00048
def set_up_phase(self, training_info, model, source: Source): """ Prepare the phase for learning """ self._optimizer_instance = self.optimizer_factory.instantiate(model) self._source = source	[ "def", "set_up_phase", "(", "self", ",", "training_info", ",", "model", ",", "source", ":", "Source", ")", ":", "self", ".", "_optimizer_instance", "=", "self", ".", "optimizer_factory", ".", "instantiate", "(", "model", ")", "self", ".", "_source", "=", "...	53	0.009302
def del_password(name, root=None): ''' .. versionadded:: 2014.7.0 Delete the password from name user name User to delete root Directory to chroot into CLI Example: .. code-block:: bash salt '*' shadow.del_password username ''' cmd = ['passwd'] if roo...	[ "def", "del_password", "(", "name", ",", "root", "=", "None", ")", ":", "cmd", "=", "[", "'passwd'", "]", "if", "root", "is", "not", "None", ":", "cmd", ".", "extend", "(", "(", "'-R'", ",", "root", ")", ")", "cmd", ".", "extend", "(", "(", "'-...	20.653846	0.001779
def tau_from_final_mass_spin(final_mass, final_spin, l=2, m=2, nmodes=1): """Returns QNM damping time for the given mass and spin and mode. Parameters ---------- final_mass : float or array Mass of the black hole (in solar masses). final_spin : float or array Dimensionless spin of t...	[ "def", "tau_from_final_mass_spin", "(", "final_mass", ",", "final_spin", ",", "l", "=", "2", ",", "m", "=", "2", ",", "nmodes", "=", "1", ")", ":", "return", "get_lm_f0tau", "(", "final_mass", ",", "final_spin", ",", "l", ",", "m", ",", "nmodes", ")", ...	38.653846	0.001942
def get_requests_for_local_unit(relation_name=None): """Extract any certificates data targeted at this unit down relation_name. :param relation_name: str Name of relation to check for data. :returns: List of bundles of certificates. :rtype: List of dicts """ local_name = local_unit().replace('/...	[ "def", "get_requests_for_local_unit", "(", "relation_name", "=", "None", ")", ":", "local_name", "=", "local_unit", "(", ")", ".", "replace", "(", "'/'", ",", "'_'", ")", "raw_certs_key", "=", "'{}.processed_requests'", ".", "format", "(", "local_name", ")", "...	40.85	0.001196
def status(ctx): """Print a status of this Lambda function""" status = ctx.status() click.echo(click.style('Policy', bold=True)) if status['policy']: line = ' {} ({})'.format( status['policy']['PolicyName'], status['policy']['Arn']) click.echo(click.style(line,...	[ "def", "status", "(", "ctx", ")", ":", "status", "=", "ctx", ".", "status", "(", ")", "click", ".", "echo", "(", "click", ".", "style", "(", "'Policy'", ",", "bold", "=", "True", ")", ")", "if", "status", "[", "'policy'", "]", ":", "line", "=", ...	41.69697	0.00071
def assemble_all(asmcode, pc=0, fork=DEFAULT_FORK): """ Assemble a sequence of textual representation of EVM instructions :param asmcode: assembly code for any number of instructions :type asmcode: str :param pc: program counter of the first instruction(optional) :type pc: int ...	[ "def", "assemble_all", "(", "asmcode", ",", "pc", "=", "0", ",", "fork", "=", "DEFAULT_FORK", ")", ":", "asmcode", "=", "asmcode", ".", "split", "(", "'\\n'", ")", "asmcode", "=", "iter", "(", "asmcode", ")", "for", "line", "in", "asmcode", ":", "if"...	32.942857	0.000842
def lookup(self, pathogenName, sampleName): """ Look up a pathogen name, sample name combination and get its FASTA/FASTQ file name and unique read count. This method should be used instead of C{add} in situations where you want an exception to be raised if a pathogen/sample comb...	[ "def", "lookup", "(", "self", ",", "pathogenName", ",", "sampleName", ")", ":", "pathogenIndex", "=", "self", ".", "_pathogens", "[", "pathogenName", "]", "sampleIndex", "=", "self", ".", "_samples", "[", "sampleName", "]", "return", "self", ".", "_readsFile...	47.222222	0.002307
def SegmentProd(a, ids): """ Segmented prod op. """ func = lambda idxs: reduce(np.multiply, a[idxs]) return seg_map(func, a, ids),	[ "def", "SegmentProd", "(", "a", ",", "ids", ")", ":", "func", "=", "lambda", "idxs", ":", "reduce", "(", "np", ".", "multiply", ",", "a", "[", "idxs", "]", ")", "return", "seg_map", "(", "func", ",", "a", ",", "ids", ")", "," ]	24.166667	0.013333
def set_cores_massive(self,filename='core_masses_massive.txt'): ''' Uesse function cores in nugridse.py ''' core_info=[] minis=[] for i in range(len(self.runs_H5_surf)): sefiles=se(self.runs_H5_out[i]) mini=sefiles.get('mini') minis.append(mini) incycle=in...	[ "def", "set_cores_massive", "(", "self", ",", "filename", "=", "'core_masses_massive.txt'", ")", ":", "core_info", "=", "[", "]", "minis", "=", "[", "]", "for", "i", "in", "range", "(", "len", "(", "self", ".", "runs_H5_surf", ")", ")", ":", "sefiles", ...	30	0.054566
def load_from_args(args): """ Given parsed commandline arguments, returns a list of ReadSource objects """ if not args.reads: return None if args.read_source_name: read_source_names = util.expand( args.read_source_name, 'read_source_name', 'read s...	[ "def", "load_from_args", "(", "args", ")", ":", "if", "not", "args", ".", "reads", ":", "return", "None", "if", "args", ".", "read_source_name", ":", "read_source_names", "=", "util", ".", "expand", "(", "args", ".", "read_source_name", ",", "'read_source_na...	26.925926	0.001328
def _verify_same_spaces(self): """Verifies that all the envs have the same observation and action space.""" # Pre-conditions: self._envs is initialized. if self._envs is None: raise ValueError("Environments not initialized.") if not isinstance(self._envs, list): tf.logging.warning("Not ch...	[ "def", "_verify_same_spaces", "(", "self", ")", ":", "# Pre-conditions: self._envs is initialized.", "if", "self", ".", "_envs", "is", "None", ":", "raise", "ValueError", "(", "\"Environments not initialized.\"", ")", "if", "not", "isinstance", "(", "self", ".", "_e...	39.810811	0.012591
def sources_relative_to_source_root(self): """ :API: public """ if self.has_sources(): abs_source_root = os.path.join(get_buildroot(), self.target_base) for source in self.sources_relative_to_buildroot(): abs_source = os.path.join(get_buildroot(), source) yield os.path.relpat...	[ "def", "sources_relative_to_source_root", "(", "self", ")", ":", "if", "self", ".", "has_sources", "(", ")", ":", "abs_source_root", "=", "os", ".", "path", ".", "join", "(", "get_buildroot", "(", ")", ",", "self", ".", "target_base", ")", "for", "source",...	38	0.008571
def consumer_initialize_task(processor, consumer_client, shard_id, cursor_position, cursor_start_time, cursor_end_time=None): """ return TaskResult if failed, or else, return InitTaskResult :param processor: :param consumer_client: :param shard_id: :param cursor_position: :param cursor_start...	[ "def", "consumer_initialize_task", "(", "processor", ",", "consumer_client", ",", "shard_id", ",", "cursor_position", ",", "cursor_start_time", ",", "cursor_end_time", "=", "None", ")", ":", "try", ":", "processor", ".", "initialize", "(", "shard_id", ")", "is_cur...	39.90625	0.002294
def block(self): ''' pfctl -a switchyard -f- < rules.txt pfctl -a switchyard -F rules pfctl -t switchyard -F r ''' st,output = _runcmd("/sbin/pfctl -aswitchyard -f -", self._rules) log_debug("Installing rules: {}".format(output))	[ "def", "block", "(", "self", ")", ":", "st", ",", "output", "=", "_runcmd", "(", "\"/sbin/pfctl -aswitchyard -f -\"", ",", "self", ".", "_rules", ")", "log_debug", "(", "\"Installing rules: {}\"", ".", "format", "(", "output", ")", ")" ]	34.75	0.010526
def _chart_support(self, name, data, caller, **kwargs): "template chart support function" id = 'chart-%s' % next(self.id) name = self._chart_class_name(name) options = dict(self.environment.options) options.update(name=name, id=id) # jinja2 prepends 'l_' or 'l_{{ n }}'(v...	[ "def", "_chart_support", "(", "self", ",", "name", ",", "data", ",", "caller", ",", "", "", "kwargs", ")", ":", "id", "=", "'chart-%s'", "%", "next", "(", "self", ".", "id", ")", "name", "=", "self", ".", "_chart_class_name", "(", "name", ")", "o...	37.576923	0.001996
def concat_cols(df1,df2,idx_col,df1_cols,df2_cols, df1_suffix,df2_suffix,wc_cols=[],suffix_all=False): """ Concatenates two pandas tables :param df1: dataframe 1 :param df2: dataframe 2 :param idx_col: column name which will be used as a common index """ df1=df1.set_index...	[ "def", "concat_cols", "(", "df1", ",", "df2", ",", "idx_col", ",", "df1_cols", ",", "df2_cols", ",", "df1_suffix", ",", "df2_suffix", ",", "wc_cols", "=", "[", "]", ",", "suffix_all", "=", "False", ")", ":", "df1", "=", "df1", ".", "set_index", "(", ...	38.636364	0.025249
def masked_max(vector: torch.Tensor, mask: torch.Tensor, dim: int, keepdim: bool = False, min_val: float = -1e7) -> torch.Tensor: """ To calculate max along certain dimensions on masked values Parameters ---------- vector : ``torch.Tensor`...	[ "def", "masked_max", "(", "vector", ":", "torch", ".", "Tensor", ",", "mask", ":", "torch", ".", "Tensor", ",", "dim", ":", "int", ",", "keepdim", ":", "bool", "=", "False", ",", "min_val", ":", "float", "=", "-", "1e7", ")", "->", "torch", ".", ...	31.965517	0.001047
def merge_recs_headers(recs): ''' take a list of recs [rec1,rec2,rec3....], each rec is a dictionary. make sure that all recs have the same headers. ''' headers = [] for rec in recs: keys = list(rec.keys()) for key in keys: if key not in headers: heade...	[ "def", "merge_recs_headers", "(", "recs", ")", ":", "headers", "=", "[", "]", "for", "rec", "in", "recs", ":", "keys", "=", "list", "(", "rec", ".", "keys", "(", ")", ")", "for", "key", "in", "keys", ":", "if", "key", "not", "in", "headers", ":",...	29.1875	0.002075
def tuplize(nested): """Recursively converts iterables into tuples. Args: nested: A nested structure of items and iterables. Returns: A nested structure of items and tuples. """ if isinstance(nested, str): return nested try: return tuple(map(tuplize, nested)) except TypeError: return...	[ "def", "tuplize", "(", "nested", ")", ":", "if", "isinstance", "(", "nested", ",", "str", ")", ":", "return", "nested", "try", ":", "return", "tuple", "(", "map", "(", "tuplize", ",", "nested", ")", ")", "except", "TypeError", ":", "return", "nested" ]	20.866667	0.015291
async def get_records_for_zone(self, dns_zone, params=None): """Get all resource record sets for a managed zone, using the DNS zone. Args: dns_zone (str): Desired DNS zone to query. params (dict): (optional) Additional query parameters for HTTP requests to the GD...	[ "async", "def", "get_records_for_zone", "(", "self", ",", "dns_zone", ",", "params", "=", "None", ")", ":", "managed_zone", "=", "self", ".", "get_managed_zone", "(", "dns_zone", ")", "url", "=", "f'{self._base_url}/managedZones/{managed_zone}/rrsets'", "if", "not",...	37.029412	0.001548
def _check_local_option(self, option): """Test the status of local negotiated Telnet options.""" if not self.telnet_opt_dict.has_key(option): self.telnet_opt_dict[option] = TelnetOption() return self.telnet_opt_dict[option].local_option	[ "def", "_check_local_option", "(", "self", ",", "option", ")", ":", "if", "not", "self", ".", "telnet_opt_dict", ".", "has_key", "(", "option", ")", ":", "self", ".", "telnet_opt_dict", "[", "option", "]", "=", "TelnetOption", "(", ")", "return", "self", ...	53.6	0.011029
def get_node_by_dsl(self, node_dict: BaseEntity) -> Optional[Node]: """Look up a node by its data dictionary by hashing it then using :func:`get_node_by_hash`.""" return self.get_node_by_hash(node_dict.as_sha512())	[ "def", "get_node_by_dsl", "(", "self", ",", "node_dict", ":", "BaseEntity", ")", "->", "Optional", "[", "Node", "]", ":", "return", "self", ".", "get_node_by_hash", "(", "node_dict", ".", "as_sha512", "(", ")", ")" ]	76	0.013043
def map_reduce(self, map, reduce, out, full_response=False, session=None, **kwargs): """Perform a map/reduce operation on this collection. If `full_response` is ``False`` (default) returns a :class:`~pymongo.collection.Collection` instance containing the results of th...	[ "def", "map_reduce", "(", "self", ",", "map", ",", "reduce", ",", "out", ",", "full_response", "=", "False", ",", "session", "=", "None", ",", "", "", "kwargs", ")", ":", "if", "not", "isinstance", "(", "out", ",", "(", "string_type", ",", "abc", ...	43.985714	0.001588
def squeeze_bits(arr: numpy.ndarray) -> numpy.ndarray: """Return a copy of an integer numpy array with the minimum bitness.""" assert arr.dtype.kind in ("i", "u") if arr.dtype.kind == "i": assert arr.min() >= 0 mlbl = int(arr.max()).bit_length() if mlbl <= 8: dtype = numpy.uint8 ...	[ "def", "squeeze_bits", "(", "arr", ":", "numpy", ".", "ndarray", ")", "->", "numpy", ".", "ndarray", ":", "assert", "arr", ".", "dtype", ".", "kind", "in", "(", "\"i\"", ",", "\"u\"", ")", "if", "arr", ".", "dtype", ".", "kind", "==", "\"i\"", ":",...	31.266667	0.00207
def _filter_cluster_data(self): """ Filter the cluster data catalog into the filtered_data catalog, which is what is shown in the H-R diagram. Filter on the values of the sliders, as well as the lasso selection in the skyviewer. """ min_temp = self.temperature_ra...	[ "def", "_filter_cluster_data", "(", "self", ")", ":", "min_temp", "=", "self", ".", "temperature_range_slider", ".", "value", "[", "0", "]", "max_temp", "=", "self", ".", "temperature_range_slider", ".", "value", "[", "1", "]", "temp_mask", "=", "np", ".", ...	38.971429	0.001431
def get(self, sid): """ Constructs a AlphaSenderContext :param sid: The sid :returns: twilio.rest.messaging.v1.service.alpha_sender.AlphaSenderContext :rtype: twilio.rest.messaging.v1.service.alpha_sender.AlphaSenderContext """ return AlphaSenderContext(self._ve...	[ "def", "get", "(", "self", ",", "sid", ")", ":", "return", "AlphaSenderContext", "(", "self", ".", "_version", ",", "service_sid", "=", "self", ".", "_solution", "[", "'service_sid'", "]", ",", "sid", "=", "sid", ",", ")" ]	37.1	0.013158
def lru_cache(maxsize=100, typed=False): """Least-recently-used cache decorator. If maxsize is set to None, the LRU features are disabled and the cache can grow without bound. If typed is True, arguments of different types will be cached separately. For example, f(3.0) and f(3) will be treated...	[ "def", "lru_cache", "(", "maxsize", "=", "100", ",", "typed", "=", "False", ")", ":", "# Users should only access the lru_cache through its public API:", "# cache_info, cache_clear, and f.__wrapped__", "# The internals of the lru_cache are encapsulated for thread safety and", "# ...	43.09375	0.002127
def p_array_indices(self, p): '''array_indices : array_index \| array_index COMMA array_indices''' if len(p) == 2: p[0] = p[1], else: p[0] = (p[1],) + p[3]	[ "def", "p_array_indices", "(", "self", ",", "p", ")", ":", "if", "len", "(", "p", ")", "==", "2", ":", "p", "[", "0", "]", "=", "p", "[", "1", "]", ",", "else", ":", "p", "[", "0", "]", "=", "(", "p", "[", "1", "]", ",", ")", "+", "p"...	31.571429	0.008811
def maybe_cythonize_extensions(top_path, config): """Tweaks for building extensions between release and development mode.""" is_release = os.path.exists(os.path.join(top_path, 'PKG-INFO')) if is_release: build_from_c_and_cpp_files(config.ext_modules) else: message = ('Please install cyt...	[ "def", "maybe_cythonize_extensions", "(", "top_path", ",", "config", ")", ":", "is_release", "=", "os", ".", "path", ".", "exists", "(", "os", ".", "path", ".", "join", "(", "top_path", ",", "'PKG-INFO'", ")", ")", "if", "is_release", ":", "build_from_c_an...	39.583333	0.000685
def syllabify(word): '''Syllabify the given word, whether simplex or complex.''' compound = not word.isalpha() syllabify = _syllabify_complex if compound else _syllabify_simplex syllabifications = list(syllabify(word)) # if variation, order variants from most preferred to least preferred if len...	[ "def", "syllabify", "(", "word", ")", ":", "compound", "=", "not", "word", ".", "isalpha", "(", ")", "syllabify", "=", "_syllabify_complex", "if", "compound", "else", "_syllabify_simplex", "syllabifications", "=", "list", "(", "syllabify", "(", "word", ")", ...	38.75	0.002101
def deriv1(x,y,i,n): """ alternative way to smooth the derivative of a noisy signal using least square fit. x=array of x axis y=array of y axis n=smoothing factor i= position in this method the slope in position i is calculated by least square fit of n points before and after positi...	[ "def", "deriv1", "(", "x", ",", "y", ",", "i", ",", "n", ")", ":", "m_", ",", "x_", ",", "y_", ",", "xy_", ",", "x_2", "=", "0.", ",", "0.", ",", "0.", ",", "0.", ",", "0.", "for", "ix", "in", "range", "(", "i", ",", "i", "+", "n", ",...	27.05	0.042857
def update_gunicorns(): """ Updates the dict of gunicorn processes. Run the ps command and parse its output for processes named after gunicorn, building up a dict of gunicorn processes. When new gunicorns are discovered, run the netstat command to determine the ports they're serving on. """ ...	[ "def", "update_gunicorns", "(", ")", ":", "global", "tick", "tick", "+=", "1", "if", "(", "tick", "*", "screen_delay", ")", "%", "ps_delay", "!=", "0", ":", "return", "tick", "=", "0", "for", "pid", "in", "gunicorns", ":", "gunicorns", "[", "pid", "]...	38.891304	0.002181
def _filter_keys(d: dict, keys: set) -> dict: """ Select a subset of keys from a dictionary. """ return {key: d[key] for key in keys if key in d}	[ "def", "_filter_keys", "(", "d", ":", "dict", ",", "keys", ":", "set", ")", "->", "dict", ":", "return", "{", "key", ":", "d", "[", "key", "]", "for", "key", "in", "keys", "if", "key", "in", "d", "}" ]	34.6	0.011299
def tag_array(events): """ Return a numpy array mapping events to tags - Rows corresponds to events - Columns correspond to tags """ all_tags = sorted(set(tag for event in events for tag in event.tags)) array = np.zeros((len(events), len(all_tags))) for row, event in enumerate(events): ...	[ "def", "tag_array", "(", "events", ")", ":", "all_tags", "=", "sorted", "(", "set", "(", "tag", "for", "event", "in", "events", "for", "tag", "in", "event", ".", "tags", ")", ")", "array", "=", "np", ".", "zeros", "(", "(", "len", "(", "events", ...	31	0.00241
def scale(requestContext, seriesList, factor): """ Takes one metric or a wildcard seriesList followed by a constant, and multiplies the datapoint by the constant provided at each point. Example:: &target=scale(Server.instance01.threads.busy,10) &target=scale(Server.instance*.threads.bu...	[ "def", "scale", "(", "requestContext", ",", "seriesList", ",", "factor", ")", ":", "for", "series", "in", "seriesList", ":", "series", ".", "name", "=", "\"scale(%s,%g)\"", "%", "(", "series", ".", "name", ",", "float", "(", "factor", ")", ")", "series",...	33.705882	0.001698
def graphql_impl( schema, source, root_value, context_value, variable_values, operation_name, field_resolver, type_resolver, middleware, execution_context_class, ) -> AwaitableOrValue[ExecutionResult]: """Execute a query, return asynchronously only if necessary.""" # Vali...	[ "def", "graphql_impl", "(", "schema", ",", "source", ",", "root_value", ",", "context_value", ",", "variable_values", ",", "operation_name", ",", "field_resolver", ",", "type_resolver", ",", "middleware", ",", "execution_context_class", ",", ")", "->", "AwaitableOrV...	25.808511	0.000794
def eye_plot(x,L,S=0): """ Eye pattern plot of a baseband digital communications waveform. The signal must be real, but can be multivalued in terms of the underlying modulation scheme. Used for BPSK eye plots in the Case Study article. Parameters ---------- x : ndarray of the real input da...	[ "def", "eye_plot", "(", "x", ",", "L", ",", "S", "=", "0", ")", ":", "plt", ".", "figure", "(", "figsize", "=", "(", "6", ",", "4", ")", ")", "idx", "=", "np", ".", "arange", "(", "0", ",", "L", "+", "1", ")", "plt", ".", "plot", "(", "...	26.52381	0.012121
def detectFileEncoding(self, fileName): ''' Detect content encoding of specific file. It will return None if it can't determine the encoding. ''' try: import chardet except ImportError: return with open(fileName, 'rb') as inputFile: raw = inputFile.read(2048) result = chardet.detect(raw) i...	[ "def", "detectFileEncoding", "(", "self", ",", "fileName", ")", ":", "try", ":", "import", "chardet", "except", "ImportError", ":", "return", "with", "open", "(", "fileName", ",", "'rb'", ")", "as", "inputFile", ":", "raw", "=", "inputFile", ".", "read", ...	27.363636	0.032103
def model_eval(sess, x, y, predictions, X_test=None, Y_test=None, feed=None, args=None): """ Compute the accuracy of a TF model on some data :param sess: TF session to use :param x: input placeholder :param y: output placeholder (for labels) :param predictions: model output predictions :par...	[ "def", "model_eval", "(", "sess", ",", "x", ",", "y", ",", "predictions", ",", "X_test", "=", "None", ",", "Y_test", "=", "None", ",", "feed", "=", "None", ",", "args", "=", "None", ")", ":", "global", "_model_eval_cache", "args", "=", "_ArgsWrapper", ...	35.891892	0.010627
def interpolate(self, xi, yi, zdata, order=1): """ Base class to handle nearest neighbour, linear, and cubic interpolation. Given a triangulation of a set of nodes and values at the nodes, this method interpolates the value at the given xi,yi coordinates. Parameters ----...	[ "def", "interpolate", "(", "self", ",", "xi", ",", "yi", ",", "zdata", ",", "order", "=", "1", ")", ":", "if", "order", "==", "0", ":", "zierr", "=", "np", ".", "zeros_like", "(", "xi", ",", "dtype", "=", "np", ".", "int", ")", "return", "self"...	38.842105	0.001983
def _needSwapWH(self, oldDirection, newDirection ): """! \~english return screen direction status @return Boolean @note No need to rotate if the screen orientation is 0 degrees and 180 degrees \~chinese 返回屏幕方向状态 @return 布尔值 @note 如果屏幕方向是0度和180度就不需...	[ "def", "_needSwapWH", "(", "self", ",", "oldDirection", ",", "newDirection", ")", ":", "if", "abs", "(", "newDirection", "-", "oldDirection", ")", "==", "0", ":", "return", "False", "if", "abs", "(", "newDirection", "-", "oldDirection", ")", "%", "180", ...	33.75	0.016216
def chooseBestDuplicates(tped, samples, oldSamples, completion, concordance_all, prefix): """Choose the best duplicates according to the completion rate. :param tped: the ``tped`` containing the duplicated samples. :param samples: the updated position of the samples in the tped con...	[ "def", "chooseBestDuplicates", "(", "tped", ",", "samples", ",", "oldSamples", ",", "completion", ",", "concordance_all", ",", "prefix", ")", ":", "# The output files", "chosenFile", "=", "None", "try", ":", "chosenFile", "=", "open", "(", "prefix", "+", "\".c...	39.317829	0.000192
def anglesep(lon0: float, lat0: float, lon1: float, lat1: float, deg: bool = True) -> float: """ Parameters ---------- lon0 : float longitude of first point lat0 : float latitude of first point lon1 : float longitude of second point lat1 : float ...	[ "def", "anglesep", "(", "lon0", ":", "float", ",", "lat0", ":", "float", ",", "lon1", ":", "float", ",", "lat1", ":", "float", ",", "deg", ":", "bool", "=", "True", ")", "->", "float", ":", "if", "angular_separation", "is", "None", ":", "raise", "I...	24.463415	0.000959
def stop(self): """Signals the background thread to stop. This does not terminate the background thread. It simply queues the stop signal. If the main process exits before the background thread processes the stop signal, it will be terminated without finishing work. The ``grace_...	[ "def", "stop", "(", "self", ")", ":", "if", "not", "self", ".", "is_alive", ":", "return", "True", "with", "self", ".", "_lock", ":", "self", ".", "_queue", ".", "put_nowait", "(", "_WORKER_TERMINATOR", ")", "self", ".", "_thread", ".", "join", "(", ...	35.375	0.002294
def ngroup(self, ascending=True): """ Number each group from 0 to the number of groups - 1. This is the enumerative complement of cumcount. Note that the numbers given to the groups match the order in which the groups would be seen when iterating over the groupby object, not th...	[ "def", "ngroup", "(", "self", ",", "ascending", "=", "True", ")", ":", "with", "_group_selection_context", "(", "self", ")", ":", "index", "=", "self", ".", "_selected_obj", ".", "index", "result", "=", "Series", "(", "self", ".", "grouper", ".", "group_...	23.609375	0.001271
def get_seqs_type(seqs): """ automagically determine input type the following types are detected: - Fasta object - FASTA file - list of regions - region file - BED file """ region_p = re.compile(r'^(.+):(\d+)-(\d+)$') if isinstance(seqs, Fasta): re...	[ "def", "get_seqs_type", "(", "seqs", ")", ":", "region_p", "=", "re", ".", "compile", "(", "r'^(.+):(\\d+)-(\\d+)$'", ")", "if", "isinstance", "(", "seqs", ",", "Fasta", ")", ":", "return", "\"fasta\"", "elif", "isinstance", "(", "seqs", ",", "list", ")", ...	33.970588	0.001684
def _update_simulation_start_cards(self): """ Update GSSHA cards for simulation start """ if self.simulation_start is not None: self._update_card("START_DATE", self.simulation_start.strftime("%Y %m %d")) self._update_card("START_TIME", self.simulation_start.strfti...	[ "def", "_update_simulation_start_cards", "(", "self", ")", ":", "if", "self", ".", "simulation_start", "is", "not", "None", ":", "self", ".", "_update_card", "(", "\"START_DATE\"", ",", "self", ".", "simulation_start", ".", "strftime", "(", "\"%Y %m %d\"", ")", ...	46.571429	0.012048
def validate(self, table: pd.DataFrame, failed_only=False) -> pd.DataFrame: """Return a dataframe of validation results for the appropriate series vs the vector of validators. Args: table (pd.DataFrame): A dataframe on which to apply validation logic. failed_only (bool): If ``Tr...	[ "def", "validate", "(", "self", ",", "table", ":", "pd", ".", "DataFrame", ",", "failed_only", "=", "False", ")", "->", "pd", ".", "DataFrame", ":", "return", "pd", ".", "concat", "(", "[", "self", ".", "_validate_input", "(", "table", ",", "failed_onl...	50.909091	0.008772
def _proxy(self): """ Generate an instance context for the instance, the context is capable of performing various actions. All instance actions are proxied to the context :returns: TaskQueueStatisticsContext for this TaskQueueStatisticsInstance :rtype: twilio.rest.taskrouter.v1...	[ "def", "_proxy", "(", "self", ")", ":", "if", "self", ".", "_context", "is", "None", ":", "self", ".", "_context", "=", "TaskQueueStatisticsContext", "(", "self", ".", "_version", ",", "workspace_sid", "=", "self", ".", "_solution", "[", "'workspace_sid'", ...	45.333333	0.008646
def create(cls, name, template='High-Security IPS Template'): """ Create an IPS Policy :param str name: Name of policy :param str template: name of template :raises CreatePolicyFailed: policy failed to create :return: IPSPolicy """ try: if cls...	[ "def", "create", "(", "cls", ",", "name", ",", "template", "=", "'High-Security IPS Template'", ")", ":", "try", ":", "if", "cls", ".", "typeof", "==", "'ips_template_policy'", "and", "template", "is", "None", ":", "fw_template", "=", "None", "else", ":", ...	34.916667	0.002323
def add_pk_if_required(db, table, name): """Return a class deriving from our Model class as well as the SQLAlchemy model. :param `sqlalchemy.schema.Table` table: table to create primary key for :param table: table to create primary key for """ db.metadata.reflect(bind=db.engine) cls_dict ...	[ "def", "add_pk_if_required", "(", "db", ",", "table", ",", "name", ")", ":", "db", ".", "metadata", ".", "reflect", "(", "bind", "=", "db", ".", "engine", ")", "cls_dict", "=", "{", "'__tablename__'", ":", "name", "}", "if", "not", "table", ".", "pri...	36.333333	0.00149
def covar_errors(params, data, errs, B, C=None): """ Take a set of parameters that were fit with lmfit, and replace the errors with the 1\sigma errors calculated using the covariance matrix. Parameters ---------- params : lmfit.Parameters Model data : 2d-array Image data ...	[ "def", "covar_errors", "(", "params", ",", "data", ",", "errs", ",", "B", ",", "C", "=", "None", ")", ":", "mask", "=", "np", ".", "where", "(", "np", ".", "isfinite", "(", "data", ")", ")", "# calculate the proper parameter errors and copy them across.", ...	26.701754	0.001267
def returnArrayFilters(arr1, arr2, limitsArr1, limitsArr2): """#TODO: docstring :param arr1: #TODO: docstring :param arr2: #TODO: docstring :param limitsArr1: #TODO: docstring :param limitsArr2: #TODO: docstring :returns: #TODO: docstring """ posL = bisect.bisect_left(arr1, limitsArr1[...	[ "def", "returnArrayFilters", "(", "arr1", ",", "arr2", ",", "limitsArr1", ",", "limitsArr2", ")", ":", "posL", "=", "bisect", ".", "bisect_left", "(", "arr1", ",", "limitsArr1", "[", "0", "]", ")", "posR", "=", "bisect", ".", "bisect_right", "(", "arr1",...	32.375	0.001876
def apply_enhancement(data, func, exclude=None, separate=False, pass_dask=False): """Apply `func` to the provided data. Args: data (xarray.DataArray): Data to be modified inplace. func (callable): Function to be applied to an xarray exclude (iterable): Bands in the...	[ "def", "apply_enhancement", "(", "data", ",", "func", ",", "exclude", "=", "None", ",", "separate", "=", "False", ",", "pass_dask", "=", "False", ")", ":", "attrs", "=", "data", ".", "attrs", "bands", "=", "data", ".", "coords", "[", "'bands'", "]", ...	35.901639	0.000444
def delta(t1, t2, words=True, justnow=datetime.timedelta(seconds=10)): ''' Calculates the estimated delta between two time objects in human-readable format. Used internally by the :func:`day` and :func:`duration` functions. :param t1: timestamp, :class:`datetime.date` or :class:`datetime.datetime` ...	[ "def", "delta", "(", "t1", ",", "t2", ",", "words", "=", "True", ",", "justnow", "=", "datetime", ".", "timedelta", "(", "seconds", "=", "10", ")", ")", ":", "t1", "=", "_to_datetime", "(", "t1", ")", "t2", "=", "_to_datetime", "(", "t2", ")", "d...	27.575758	0.000265
def concatenate_textlcs(lclist, sortby='rjd', normalize=True): '''This concatenates a list of light curves. Does not care about overlaps or duplicates. The light curves must all be from the same aperture. The intended use is to concatenate light curves a...	[ "def", "concatenate_textlcs", "(", "lclist", ",", "sortby", "=", "'rjd'", ",", "normalize", "=", "True", ")", ":", "# read the first light curve", "lcdict", "=", "read_hatpi_textlc", "(", "lclist", "[", "0", "]", ")", "# track which LC goes where", "# initial LC", ...	32.734375	0.001621
def msgBox(self, promptType, _timeout=-1, **options): ''' Send a user prompt request to the GUI Arguments: promptType (string): The prompt type to send to the GUI. Currently the only type supported is 'confirm'. _timeout (int): Th...	[ "def", "msgBox", "(", "self", ",", "promptType", ",", "_timeout", "=", "-", "1", ",", "", "", "options", ")", ":", "if", "promptType", "==", "'confirm'", ":", "return", "self", ".", "_sendConfirmPrompt", "(", "_timeout", ",", "options", ")", "else", ...	35	0.001813
def last_modified(self): """Retrieves the last modified time stamp of the incident/incidents from the output response Returns: last_modified(namedtuple): List of named tuples of last modified time stamp of the incident/incidents """ resource_list = self.t...	[ "def", "last_modified", "(", "self", ")", ":", "resource_list", "=", "self", ".", "traffic_incident", "(", ")", "last_modified", "=", "namedtuple", "(", "'last_modified'", ",", "'last_modified'", ")", "if", "len", "(", "resource_list", ")", "==", "1", "and", ...	41.631579	0.002472
def create_ad_hoc_field(cls, db_type): ''' Give an SQL column description such as "Enum8('apple' = 1, 'banana' = 2, 'orange' = 3)" this method returns a matching enum field. ''' import re try: Enum # exists in Python 3.4+ except NameError: ...	[ "def", "create_ad_hoc_field", "(", "cls", ",", "db_type", ")", ":", "import", "re", "try", ":", "Enum", "# exists in Python 3.4+", "except", "NameError", ":", "from", "enum", "import", "Enum", "# use the enum34 library instead", "members", "=", "{", "}", "for", ...	41.5	0.011782
def run_container(docker_client, backup_data): """Pull the Docker image and creates a container with a '/backup' volume. This volume will be mounted on the temporary workdir previously created. It will then start the container and return the container object. """ docker_client.pull(backup_data[...	[ "def", "run_container", "(", "docker_client", ",", "backup_data", ")", ":", "docker_client", ".", "pull", "(", "backup_data", "[", "'image'", "]", ")", "container", "=", "docker_client", ".", "create_container", "(", "image", "=", "backup_data", "[", "'image'", ...	31	0.00149
def _path_to_be_kept(self, path): """Does the given path pass the filtering criteria?""" if self.excludes and (path in self.excludes or helpers.is_inside_any(self.excludes, path)): return False if self.includes: return (path in self.includes ...	[ "def", "_path_to_be_kept", "(", "self", ",", "path", ")", ":", "if", "self", ".", "excludes", "and", "(", "path", "in", "self", ".", "excludes", "or", "helpers", ".", "is_inside_any", "(", "self", ".", "excludes", ",", "path", ")", ")", ":", "return", ...	42.222222	0.010309
def get_all_lower(self): """Return all parent GO IDs through both reverse 'is_a' and all relationships.""" all_lower = set() for lower in self.get_goterms_lower(): all_lower.add(lower.item_id) all_lower \|= lower.get_all_lower() return all_lower	[ "def", "get_all_lower", "(", "self", ")", ":", "all_lower", "=", "set", "(", ")", "for", "lower", "in", "self", ".", "get_goterms_lower", "(", ")", ":", "all_lower", ".", "add", "(", "lower", ".", "item_id", ")", "all_lower", "\|=", "lower", ".", "get_a...	42	0.01
def stop(self): """Halts the acquisition, this must be called before resetting acquisition""" try: self.aitask.stop() self.aotask.stop() pass except: print u"No task running" self.aitask = None self.aotask = None	[ "def", "stop", "(", "self", ")", ":", "try", ":", "self", ".", "aitask", ".", "stop", "(", ")", "self", ".", "aotask", ".", "stop", "(", ")", "pass", "except", ":", "print", "u\"No task running\"", "self", ".", "aitask", "=", "None", "self", ".", "...	29.6	0.016393
def operation_recorder(self): """ :class:`BaseOperationRecorder`: Deprecated: The operation recorder that was last added to the connection, or `None` if the connection does not currently have any recorders. New in pywbem 0.9 as experimental. Deprecated since pywbem 0.12. ...	[ "def", "operation_recorder", "(", "self", ")", ":", "warnings", ".", "warn", "(", "\"Reading the WBEMConnection.operation_recorder property has been \"", "\"deprecated. Use the operation_recorders property instead.\"", ",", "DeprecationWarning", ",", "2", ")", "try", ":", "last...	42.878788	0.001382
def dfsummary_made(self): """check if the summary table exists""" try: empty = self.dfsummary.empty except AttributeError: empty = True return not empty	[ "def", "dfsummary_made", "(", "self", ")", ":", "try", ":", "empty", "=", "self", ".", "dfsummary", ".", "empty", "except", "AttributeError", ":", "empty", "=", "True", "return", "not", "empty" ]	28.857143	0.009615
def list_requests(status=None): ''' List certificate requests made to CertCentral. You can filter by status: ``pending``, ``approved``, ``rejected`` CLI Example: .. code-block:: bash salt-run digicert.list_requests pending ''' if status: url = '{0}/request?status={1}'.form...	[ "def", "list_requests", "(", "status", "=", "None", ")", ":", "if", "status", ":", "url", "=", "'{0}/request?status={1}'", ".", "format", "(", "_base_url", "(", ")", ",", "status", ")", "else", ":", "url", "=", "'{0}/request'", ".", "format", "(", "_base...	26.8	0.002401
def apply_same_chip_constraints(vertices_resources, nets, constraints): """Modify a set of vertices_resources, nets and constraints to account for all SameChipConstraints. To allow placement algorithms to handle SameChipConstraints without any special cases, Vertices identified in a SameChipConstraint ...	[ "def", "apply_same_chip_constraints", "(", "vertices_resources", ",", "nets", ",", "constraints", ")", ":", "# Make a copy of the basic structures to be modified by this function", "vertices_resources", "=", "vertices_resources", ".", "copy", "(", ")", "nets", "=", "nets", ...	43.081301	0.000184
def p_type_specifier_2(t): """type_specifier : INT \| HYPER \| FLOAT \| DOUBLE \| QUADRUPLE \| BOOL \| ID \| UNSIGNED \| enum_type_spec ...	[ "def", "p_type_specifier_2", "(", "t", ")", ":", "# FRED - Note UNSIGNED is not in spec", "if", "isinstance", "(", "t", "[", "1", "]", ",", "type_info", ")", ":", "t", "[", "0", "]", "=", "t", "[", "1", "]", "else", ":", "t", "[", "0", "]", "=", "t...	31	0.001842
def grad(self, X, params): """ Return the gradient of the basis function for each parameter. Parameters ---------- X : ndarray (N, d) array of observations where N is the number of samples, and d is the dimensionality of X. params : optional ...	[ "def", "grad", "(", "self", ",", "X", ",", "*", "params", ")", ":", "# Establish a few dimensions", "N", "=", "X", ".", "shape", "[", "0", "]", "D", "=", "self", ".", "get_dim", "(", "X", ")", "endinds", "=", "self", ".", "__base_locations", "(", "...	36.673469	0.001084
def wait_for_click(self, button, timeOut=10.0): """ Wait for a mouse click Usage: C{mouse.wait_for_click(self, button, timeOut=10.0)} @param button: they mouse button click to wait for as a button number, 1-9 @param timeOut: maximum time, in seconds, to wait for the key...	[ "def", "wait_for_click", "(", "self", ",", "button", ",", "timeOut", "=", "10.0", ")", ":", "button", "=", "int", "(", "button", ")", "w", "=", "iomediator", ".", "Waiter", "(", "None", ",", "None", ",", "button", ",", "timeOut", ")", "w", ".", "wa...	36.666667	0.011086
def _fix_missing_tenant_id(self, context, body, key): """Will add the tenant_id to the context from body. It is assumed that the body must have a tenant_id because neutron core could never have gotten here otherwise. """ if not body: raise n_exc.BadRequest(resource=k...	[ "def", "_fix_missing_tenant_id", "(", "self", ",", "context", ",", "body", ",", "key", ")", ":", "if", "not", "body", ":", "raise", "n_exc", ".", "BadRequest", "(", "resource", "=", "key", ",", "msg", "=", "\"Body malformed\"", ")", "resource", "=", "bod...	43.789474	0.002353
def search(self, *kwargs): """Searches for files/folders Args: \\*kwargs (dict): A dictionary containing necessary parameters (check https://developers.box.com/docs/#search for list of parameters) Returns: dict. ...	[ "def", "search", "(", "self", ",", "", "", "kwargs", ")", ":", "query_string", "=", "{", "}", "for", "key", ",", "value", "in", "kwargs", ".", "iteritems", "(", ")", ":", "query_string", "[", "key", "]", "=", "value", "return", "self", ".", "__re...	33.863636	0.009138
def read_cands(filename): """Read in the contents of a cands comb file""" import sre lines=file(filename).readlines() exps=[] cands=[] coo=[] for line in lines: if ( line[0:2]=="##" ) : break exps.append(line[2:].strip()) for line in lines: if ( ...	[ "def", "read_cands", "(", "filename", ")", ":", "import", "sre", "lines", "=", "file", "(", "filename", ")", ".", "readlines", "(", ")", "exps", "=", "[", "]", "cands", "=", "[", "]", "coo", "=", "[", "]", "for", "line", "in", "lines", ":", "if",...	25.967742	0.035928
def remove_prefix(self, auth, spec, recursive = False): """ Remove prefix matching `spec`. * `auth` [BaseAuth] AAA options. * `spec` [prefix_spec] Specifies prefixe to remove. * `recursive` [bool] When set to True, also remove ...	[ "def", "remove_prefix", "(", "self", ",", "auth", ",", "spec", ",", "recursive", "=", "False", ")", ":", "self", ".", "_logger", ".", "debug", "(", "\"remove_prefix called; spec: %s\"", "%", "unicode", "(", "spec", ")", ")", "# sanity check - do we have all attr...	40.472222	0.002345
def parse_comment(self, comment, filename, lineno, endlineno, include_paths=None, stripped=False): """ Returns a Comment given a string """ if not stripped and not self.__validate_c_comment(comment.strip()): return None title_offset = 0 ...	[ "def", "parse_comment", "(", "self", ",", "comment", ",", "filename", ",", "lineno", ",", "endlineno", ",", "include_paths", "=", "None", ",", "stripped", "=", "False", ")", ":", "if", "not", "stripped", "and", "not", "self", ".", "__validate_c_comment", "...	38.95	0.002191
def main(argv=None): """Send X10 commands when module is used from the command line. This uses syntax similar to sendCommands, for example: x10.py com2 A1 On, A2 Off, B All Off """ if len(argv): # join all the arguments together by spaces so that quotes # aren't required on the com...	[ "def", "main", "(", "argv", "=", "None", ")", ":", "if", "len", "(", "argv", ")", ":", "# join all the arguments together by spaces so that quotes", "# aren't required on the command line.", "commands", "=", "' '", ".", "join", "(", "argv", ")", "# the comPort is ever...	28.944444	0.001859
def lcsstr(self, src, tar): """Return the longest common substring of two strings. Longest common substring (LCSstr). Based on the code from https://en.wikibooks.org/wiki/Algorithm_Implementation/Strings/Longest_common_substring :cite:`Wikibooks:2018`. This is licensed ...	[ "def", "lcsstr", "(", "self", ",", "src", ",", "tar", ")", ":", "lengths", "=", "np_zeros", "(", "(", "len", "(", "src", ")", "+", "1", ",", "len", "(", "tar", ")", "+", "1", ")", ",", "dtype", "=", "np_int", ")", "longest", ",", "i_longest", ...	30.115385	0.001855
def as_vartype(vartype): """Cast various inputs to a valid vartype object. Args: vartype (:class:`.Vartype`/str/set): Variable type. Accepted input values: * :class:`.Vartype.SPIN`, ``'SPIN'``, ``{-1, 1}`` * :class:`.Vartype.BINARY`, ``'BINARY'``, ``{0, 1}`` Re...	[ "def", "as_vartype", "(", "vartype", ")", ":", "if", "isinstance", "(", "vartype", ",", "Vartype", ")", ":", "return", "vartype", "try", ":", "if", "isinstance", "(", "vartype", ",", "str", ")", ":", "vartype", "=", "Vartype", "[", "vartype", "]", "eli...	28.6	0.000966
def convert_elementwise_add( params, w_name, scope_name, inputs, layers, weights, names ): """ Convert elementwise addition. Args: params: dictionary with layer parameters w_name: name prefix in state_dict scope_name: pytorch scope name inputs: pytorch node inputs ...	[ "def", "convert_elementwise_add", "(", "params", ",", "w_name", ",", "scope_name", ",", "inputs", ",", "layers", ",", "weights", ",", "names", ")", ":", "print", "(", "'Converting elementwise_add ...'", ")", "if", "'broadcast'", "in", "params", ":", "model0", ...	29.891304	0.001408
def pretty_repr(instance): """ A function assignable to the ``__repr__`` dunder method, so that the ``prettyprinter`` definition for the type is used to provide repr output. Usage: .. code:: python from prettyprinter import pretty_repr class MyClass: __repr__ = pretty_...	[ "def", "pretty_repr", "(", "instance", ")", ":", "instance_type", "=", "type", "(", "instance", ")", "if", "not", "is_registered", "(", "instance_type", ",", "check_superclasses", "=", "True", ",", "check_deferred", "=", "True", ",", "register_deferred", "=", ...	29.514286	0.000937
def aseg_on_mri(mri_spec, aseg_spec, alpha_mri=1.0, alpha_seg=1.0, num_rows=2, num_cols=6, rescale_method='global', aseg_cmap='freesurfer', sub_cortical=False, annot=None, ...	[ "def", "aseg_on_mri", "(", "mri_spec", ",", "aseg_spec", ",", "alpha_mri", "=", "1.0", ",", "alpha_seg", "=", "1.0", ",", "num_rows", "=", "2", ",", "num_cols", "=", "6", ",", "rescale_method", "=", "'global'", ",", "aseg_cmap", "=", "'freesurfer'", ",", ...	36.55	0.001998
def get_expiration_seconds_v2(expiration): """Convert 'expiration' to a number of seconds in the future. :type expiration: Union[Integer, datetime.datetime, datetime.timedelta] :param expiration: Point in time when the signed URL should expire. :raises: :exc:`TypeError` when expiration is not a valid ...	[ "def", "get_expiration_seconds_v2", "(", "expiration", ")", ":", "# If it's a timedelta, add it to `now` in UTC.", "if", "isinstance", "(", "expiration", ",", "datetime", ".", "timedelta", ")", ":", "now", "=", "NOW", "(", ")", ".", "replace", "(", "tzinfo", "=", ...	37.518519	0.000962
def buildhtml(self): """Build the HTML page Create the htmlheader with css / js Create html page """ self.buildcontent() self.buildhtmlheader() self.content = self._htmlcontent.decode('utf-8') # need to ensure unicode self._htmlcontent = self.template_page...	[ "def", "buildhtml", "(", "self", ")", ":", "self", ".", "buildcontent", "(", ")", "self", ".", "buildhtmlheader", "(", ")", "self", ".", "content", "=", "self", ".", "_htmlcontent", ".", "decode", "(", "'utf-8'", ")", "# need to ensure unicode", "self", "....	37.4	0.010444
def eval(w,t,x,msk,s): """ Pythia server-side computation of intermediate PRF output. @w: ensemble key selector (any string, e.g. webserver ID) @t: tweak (any string, e.g. user ID) @x: message (any string) @msk: Pythia server's master secret key @s: state value from Pythia server's key table...	[ "def", "eval", "(", "w", ",", "t", ",", "x", ",", "msk", ",", "s", ")", ":", "# Verify types", "assertType", "(", "w", ",", "(", "str", ",", "int", ",", "long", ")", ")", "assertType", "(", "t", ",", "(", "str", ",", "int", ",", "long", ")", ...	29.24	0.011921
def create_from_dict(cls, src_dict, roi_skydir=None, rescale=False): """Create a source object from a python dictionary. Parameters ---------- src_dict : dict Dictionary defining the properties of the source. """ src_dict = copy.deepcopy(src_dict) src...	[ "def", "create_from_dict", "(", "cls", ",", "src_dict", ",", "roi_skydir", "=", "None", ",", "rescale", "=", "False", ")", ":", "src_dict", "=", "copy", ".", "deepcopy", "(", "src_dict", ")", "src_dict", ".", "setdefault", "(", "'SpatialModel'", ",", "'Poi...	38.984375	0.001173

def merge(self, other, reference_seq): '''Tries to merge this VcfRecord with other VcfRecord. Simple example (working in 0-based coords): ref = ACGT var1 = SNP at position 1, C->G var2 = SNP at position 3, T->A then this returns new variant, position=1, REF=CGT, ALT=GGA. ...

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def rstrip(self, chars=None): """ Like str.rstrip, except it returns the Colr instance. """ return self.__class__( self._str_strip('rstrip', chars), no_closing=chars and (closing_code in chars), )

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def suppress_keyboard_interrupt_message(): """Register a new excepthook to suppress KeyboardInterrupt exception messages, and exit with status code 130. """ old_excepthook = sys.excepthook def new_hook(type, value, traceback): if type != KeyboardInterrupt: old_excepthook(type, ...

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def _align_method_FRAME(left, right, axis): """ convert rhs to meet lhs dims if input is list, tuple or np.ndarray """ def to_series(right): msg = ('Unable to coerce to Series, length must be {req_len}: ' 'given {given_len}') if axis is not None and left._get_axis_name(axis) == '...

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def clean(self): """Routine to return C/NOFS IVM data cleaned to the specified level Parameters ----------- inst : (pysat.Instrument) Instrument class object, whose attribute clean_level is used to return the desired level of data selectivity. Returns -------- Void : (NoneT...

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def elapsed(self): """ Elapsed time [µs] between start and stop timestamps. If stop is empty then returned time is difference between start and current timestamp. """ if self._stop is None: return timer() - self._start return self._stop - self._start

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def convert_to_G(self, word): """ Given a size such as '2333M', return the converted value in G """ value = 0.0 if word[-1] == 'G' or word[-1] == 'g': value = float(word[:-1]) elif word[-1] == 'M' or word[-1] == 'm': value = float(word[:-1]) / 1000.0 elif word[-1] == 'K' or word[...

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def argmin(input_, key=None): """ Returns index / key of the item with the smallest value. Args: input_ (dict or list): Note: a[argmin(a, key=key)] == min(a, key=key) """ # if isinstance(input_, dict): # return list(input_.keys())[argmin(list(input_.values()))] # el...

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def isBool(self, type): """ is the type a boolean value? :param type: PKCS#11 type like `CKA_ALWAYS_SENSITIVE` :rtype: bool """ if type in (CKA_ALWAYS_SENSITIVE, CKA_DECRYPT, CKA_DERIVE, CKA_ENCRYPT, ...

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def then(self, success=None, failure=None): """ This method takes two optional arguments. The first argument is used if the "self promise" is fulfilled and the other is used if the "self promise" is rejected. In either case, this method returns another promise that effectively ...

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def get_reports(): """ Returns energy data from 1960 to 2014 across various factors. """ if False: # If there was a Test version of this method, it would go here. But alas. pass else: rows = _Constants._DATABASE.execute("SELECT data FROM energy".format( hardw...

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def get_local_file_dist(self): """ Handle importing from a source archive; this also uses setup_requires but points easy_install directly to the source archive. """ if not os.path.isfile(self.path): return log.info('Attempting to unpack and import astropy_he...

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def get_definition_location(self): """Returns a (module, lineno) tuple""" if self.lineno is None and self.assignments: self.lineno = self.assignments[0].get_lineno() return (self.module, self.lineno)

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def _evaluate(self,x,return_indices = False): ''' Returns the level of the interpolated function at each value in x. Only called internally by HARKinterpolator1D.__call__ (etc). ''' return self._evalOrDer(x,True,False)[0]

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def render_query(dataset, tables, select=None, conditions=None, groupings=None, having=None, order_by=None, limit=None): """Render a query that will run over the given tables using the specified parameters. Parameters ---------- dataset : str The BigQuery dataset to query d...

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def set_up_phase(self, training_info, model, source: Source): """ Prepare the phase for learning """ self._optimizer_instance = self.optimizer_factory.instantiate(model) self._source = source

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def del_password(name, root=None): ''' .. versionadded:: 2014.7.0 Delete the password from name user name User to delete root Directory to chroot into CLI Example: .. code-block:: bash salt '*' shadow.del_password username ''' cmd = ['passwd'] if roo...

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def tau_from_final_mass_spin(final_mass, final_spin, l=2, m=2, nmodes=1): """Returns QNM damping time for the given mass and spin and mode. Parameters ---------- final_mass : float or array Mass of the black hole (in solar masses). final_spin : float or array Dimensionless spin of t...

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def get_requests_for_local_unit(relation_name=None): """Extract any certificates data targeted at this unit down relation_name. :param relation_name: str Name of relation to check for data. :returns: List of bundles of certificates. :rtype: List of dicts """ local_name = local_unit().replace('/...

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def status(ctx): """Print a status of this Lambda function""" status = ctx.status() click.echo(click.style('Policy', bold=True)) if status['policy']: line = ' {} ({})'.format( status['policy']['PolicyName'], status['policy']['Arn']) click.echo(click.style(line,...

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def assemble_all(asmcode, pc=0, fork=DEFAULT_FORK): """ Assemble a sequence of textual representation of EVM instructions :param asmcode: assembly code for any number of instructions :type asmcode: str :param pc: program counter of the first instruction(optional) :type pc: int ...

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def lookup(self, pathogenName, sampleName): """ Look up a pathogen name, sample name combination and get its FASTA/FASTQ file name and unique read count. This method should be used instead of C{add} in situations where you want an exception to be raised if a pathogen/sample comb...

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def SegmentProd(a, ids): """ Segmented prod op. """ func = lambda idxs: reduce(np.multiply, a[idxs]) return seg_map(func, a, ids),

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def set_cores_massive(self,filename='core_masses_massive.txt'): ''' Uesse function cores in nugridse.py ''' core_info=[] minis=[] for i in range(len(self.runs_H5_surf)): sefiles=se(self.runs_H5_out[i]) mini=sefiles.get('mini') minis.append(mini) incycle=in...

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def load_from_args(args): """ Given parsed commandline arguments, returns a list of ReadSource objects """ if not args.reads: return None if args.read_source_name: read_source_names = util.expand( args.read_source_name, 'read_source_name', 'read s...

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def _verify_same_spaces(self): """Verifies that all the envs have the same observation and action space.""" # Pre-conditions: self._envs is initialized. if self._envs is None: raise ValueError("Environments not initialized.") if not isinstance(self._envs, list): tf.logging.warning("Not ch...

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def sources_relative_to_source_root(self): """ :API: public """ if self.has_sources(): abs_source_root = os.path.join(get_buildroot(), self.target_base) for source in self.sources_relative_to_buildroot(): abs_source = os.path.join(get_buildroot(), source) yield os.path.relpat...

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def consumer_initialize_task(processor, consumer_client, shard_id, cursor_position, cursor_start_time, cursor_end_time=None): """ return TaskResult if failed, or else, return InitTaskResult :param processor: :param consumer_client: :param shard_id: :param cursor_position: :param cursor_start...

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def block(self): ''' pfctl -a switchyard -f- < rules.txt pfctl -a switchyard -F rules pfctl -t switchyard -F r ''' st,output = _runcmd("/sbin/pfctl -aswitchyard -f -", self._rules) log_debug("Installing rules: {}".format(output))

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def _chart_support(self, name, data, caller, **kwargs): "template chart support function" id = 'chart-%s' % next(self.id) name = self._chart_class_name(name) options = dict(self.environment.options) options.update(name=name, id=id) # jinja2 prepends 'l_' or 'l_{{ n }}'(v...

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def concat_cols(df1,df2,idx_col,df1_cols,df2_cols, df1_suffix,df2_suffix,wc_cols=[],suffix_all=False): """ Concatenates two pandas tables :param df1: dataframe 1 :param df2: dataframe 2 :param idx_col: column name which will be used as a common index """ df1=df1.set_index...

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def masked_max(vector: torch.Tensor, mask: torch.Tensor, dim: int, keepdim: bool = False, min_val: float = -1e7) -> torch.Tensor: """ To calculate max along certain dimensions on masked values Parameters ---------- vector : ``torch.Tensor`...

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def merge_recs_headers(recs): ''' take a list of recs [rec1,rec2,rec3....], each rec is a dictionary. make sure that all recs have the same headers. ''' headers = [] for rec in recs: keys = list(rec.keys()) for key in keys: if key not in headers: heade...

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def tuplize(nested): """Recursively converts iterables into tuples. Args: nested: A nested structure of items and iterables. Returns: A nested structure of items and tuples. """ if isinstance(nested, str): return nested try: return tuple(map(tuplize, nested)) except TypeError: return...

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async def get_records_for_zone(self, dns_zone, params=None): """Get all resource record sets for a managed zone, using the DNS zone. Args: dns_zone (str): Desired DNS zone to query. params (dict): (optional) Additional query parameters for HTTP requests to the GD...

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def _check_local_option(self, option): """Test the status of local negotiated Telnet options.""" if not self.telnet_opt_dict.has_key(option): self.telnet_opt_dict[option] = TelnetOption() return self.telnet_opt_dict[option].local_option

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def get_node_by_dsl(self, node_dict: BaseEntity) -> Optional[Node]: """Look up a node by its data dictionary by hashing it then using :func:`get_node_by_hash`.""" return self.get_node_by_hash(node_dict.as_sha512())

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def map_reduce(self, map, reduce, out, full_response=False, session=None, **kwargs): """Perform a map/reduce operation on this collection. If `full_response` is ``False`` (default) returns a :class:`~pymongo.collection.Collection` instance containing the results of th...

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def squeeze_bits(arr: numpy.ndarray) -> numpy.ndarray: """Return a copy of an integer numpy array with the minimum bitness.""" assert arr.dtype.kind in ("i", "u") if arr.dtype.kind == "i": assert arr.min() >= 0 mlbl = int(arr.max()).bit_length() if mlbl <= 8: dtype = numpy.uint8 ...

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def _filter_cluster_data(self): """ Filter the cluster data catalog into the filtered_data catalog, which is what is shown in the H-R diagram. Filter on the values of the sliders, as well as the lasso selection in the skyviewer. """ min_temp = self.temperature_ra...

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def get(self, sid): """ Constructs a AlphaSenderContext :param sid: The sid :returns: twilio.rest.messaging.v1.service.alpha_sender.AlphaSenderContext :rtype: twilio.rest.messaging.v1.service.alpha_sender.AlphaSenderContext """ return AlphaSenderContext(self._ve...

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def lru_cache(maxsize=100, typed=False): """Least-recently-used cache decorator. If *maxsize* is set to None, the LRU features are disabled and the cache can grow without bound. If *typed* is True, arguments of different types will be cached separately. For example, f(3.0) and f(3) will be treated...

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def p_array_indices(self, p): '''array_indices : array_index | array_index COMMA array_indices''' if len(p) == 2: p[0] = p[1], else: p[0] = (p[1],) + p[3]

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def maybe_cythonize_extensions(top_path, config): """Tweaks for building extensions between release and development mode.""" is_release = os.path.exists(os.path.join(top_path, 'PKG-INFO')) if is_release: build_from_c_and_cpp_files(config.ext_modules) else: message = ('Please install cyt...

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def syllabify(word): '''Syllabify the given word, whether simplex or complex.''' compound = not word.isalpha() syllabify = _syllabify_complex if compound else _syllabify_simplex syllabifications = list(syllabify(word)) # if variation, order variants from most preferred to least preferred if len...

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def deriv1(x,y,i,n): """ alternative way to smooth the derivative of a noisy signal using least square fit. x=array of x axis y=array of y axis n=smoothing factor i= position in this method the slope in position i is calculated by least square fit of n points before and after positi...

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def update_gunicorns(): """ Updates the dict of gunicorn processes. Run the ps command and parse its output for processes named after gunicorn, building up a dict of gunicorn processes. When new gunicorns are discovered, run the netstat command to determine the ports they're serving on. """ ...

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def _filter_keys(d: dict, keys: set) -> dict: """ Select a subset of keys from a dictionary. """ return {key: d[key] for key in keys if key in d}

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def tag_array(events): """ Return a numpy array mapping events to tags - Rows corresponds to events - Columns correspond to tags """ all_tags = sorted(set(tag for event in events for tag in event.tags)) array = np.zeros((len(events), len(all_tags))) for row, event in enumerate(events): ...

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def scale(requestContext, seriesList, factor): """ Takes one metric or a wildcard seriesList followed by a constant, and multiplies the datapoint by the constant provided at each point. Example:: &target=scale(Server.instance01.threads.busy,10) &target=scale(Server.instance*.threads.bu...

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def graphql_impl( schema, source, root_value, context_value, variable_values, operation_name, field_resolver, type_resolver, middleware, execution_context_class, ) -> AwaitableOrValue[ExecutionResult]: """Execute a query, return asynchronously only if necessary.""" # Vali...

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def eye_plot(x,L,S=0): """ Eye pattern plot of a baseband digital communications waveform. The signal must be real, but can be multivalued in terms of the underlying modulation scheme. Used for BPSK eye plots in the Case Study article. Parameters ---------- x : ndarray of the real input da...

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def detectFileEncoding(self, fileName): ''' Detect content encoding of specific file. It will return None if it can't determine the encoding. ''' try: import chardet except ImportError: return with open(fileName, 'rb') as inputFile: raw = inputFile.read(2048) result = chardet.detect(raw) i...

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def model_eval(sess, x, y, predictions, X_test=None, Y_test=None, feed=None, args=None): """ Compute the accuracy of a TF model on some data :param sess: TF session to use :param x: input placeholder :param y: output placeholder (for labels) :param predictions: model output predictions :par...

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def interpolate(self, xi, yi, zdata, order=1): """ Base class to handle nearest neighbour, linear, and cubic interpolation. Given a triangulation of a set of nodes and values at the nodes, this method interpolates the value at the given xi,yi coordinates. Parameters ----...

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def _needSwapWH(self, oldDirection, newDirection ): """! \~english return screen direction status @return Boolean @note No need to rotate if the screen orientation is 0 degrees and 180 degrees \~chinese 返回屏幕方向状态 @return 布尔值 @note 如果屏幕方向是0度和180度就不需...

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def chooseBestDuplicates(tped, samples, oldSamples, completion, concordance_all, prefix): """Choose the best duplicates according to the completion rate. :param tped: the ``tped`` containing the duplicated samples. :param samples: the updated position of the samples in the tped con...

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def anglesep(lon0: float, lat0: float, lon1: float, lat1: float, deg: bool = True) -> float: """ Parameters ---------- lon0 : float longitude of first point lat0 : float latitude of first point lon1 : float longitude of second point lat1 : float ...

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def stop(self): """Signals the background thread to stop. This does not terminate the background thread. It simply queues the stop signal. If the main process exits before the background thread processes the stop signal, it will be terminated without finishing work. The ``grace_...

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def ngroup(self, ascending=True): """ Number each group from 0 to the number of groups - 1. This is the enumerative complement of cumcount. Note that the numbers given to the groups match the order in which the groups would be seen when iterating over the groupby object, not th...

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def get_seqs_type(seqs): """ automagically determine input type the following types are detected: - Fasta object - FASTA file - list of regions - region file - BED file """ region_p = re.compile(r'^(.+):(\d+)-(\d+)$') if isinstance(seqs, Fasta): re...

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def _update_simulation_start_cards(self): """ Update GSSHA cards for simulation start """ if self.simulation_start is not None: self._update_card("START_DATE", self.simulation_start.strftime("%Y %m %d")) self._update_card("START_TIME", self.simulation_start.strfti...

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def validate(self, table: pd.DataFrame, failed_only=False) -> pd.DataFrame: """Return a dataframe of validation results for the appropriate series vs the vector of validators. Args: table (pd.DataFrame): A dataframe on which to apply validation logic. failed_only (bool): If ``Tr...

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def _proxy(self): """ Generate an instance context for the instance, the context is capable of performing various actions. All instance actions are proxied to the context :returns: TaskQueueStatisticsContext for this TaskQueueStatisticsInstance :rtype: twilio.rest.taskrouter.v1...

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def create(cls, name, template='High-Security IPS Template'): """ Create an IPS Policy :param str name: Name of policy :param str template: name of template :raises CreatePolicyFailed: policy failed to create :return: IPSPolicy """ try: if cls...

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def add_pk_if_required(db, table, name): """Return a class deriving from our Model class as well as the SQLAlchemy model. :param `sqlalchemy.schema.Table` table: table to create primary key for :param table: table to create primary key for """ db.metadata.reflect(bind=db.engine) cls_dict ...

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def covar_errors(params, data, errs, B, C=None): """ Take a set of parameters that were fit with lmfit, and replace the errors with the 1\sigma errors calculated using the covariance matrix. Parameters ---------- params : lmfit.Parameters Model data : 2d-array Image data ...

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def returnArrayFilters(arr1, arr2, limitsArr1, limitsArr2): """#TODO: docstring :param arr1: #TODO: docstring :param arr2: #TODO: docstring :param limitsArr1: #TODO: docstring :param limitsArr2: #TODO: docstring :returns: #TODO: docstring """ posL = bisect.bisect_left(arr1, limitsArr1[...

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def apply_enhancement(data, func, exclude=None, separate=False, pass_dask=False): """Apply `func` to the provided data. Args: data (xarray.DataArray): Data to be modified inplace. func (callable): Function to be applied to an xarray exclude (iterable): Bands in the...

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def delta(t1, t2, words=True, justnow=datetime.timedelta(seconds=10)): ''' Calculates the estimated delta between two time objects in human-readable format. Used internally by the :func:`day` and :func:`duration` functions. :param t1: timestamp, :class:`datetime.date` or :class:`datetime.datetime` ...

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def concatenate_textlcs(lclist, sortby='rjd', normalize=True): '''This concatenates a list of light curves. Does not care about overlaps or duplicates. The light curves must all be from the same aperture. The intended use is to concatenate light curves a...

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def msgBox(self, promptType, _timeout=-1, **options): ''' Send a user prompt request to the GUI Arguments: promptType (string): The prompt type to send to the GUI. Currently the only type supported is 'confirm'. _timeout (int): Th...

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def last_modified(self): """Retrieves the last modified time stamp of the incident/incidents from the output response Returns: last_modified(namedtuple): List of named tuples of last modified time stamp of the incident/incidents """ resource_list = self.t...

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def create_ad_hoc_field(cls, db_type): ''' Give an SQL column description such as "Enum8('apple' = 1, 'banana' = 2, 'orange' = 3)" this method returns a matching enum field. ''' import re try: Enum # exists in Python 3.4+ except NameError: ...

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def run_container(docker_client, backup_data): """Pull the Docker image and creates a container with a '/backup' volume. This volume will be mounted on the temporary workdir previously created. It will then start the container and return the container object. """ docker_client.pull(backup_data[...

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def _path_to_be_kept(self, path): """Does the given path pass the filtering criteria?""" if self.excludes and (path in self.excludes or helpers.is_inside_any(self.excludes, path)): return False if self.includes: return (path in self.includes ...

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def get_all_lower(self): """Return all parent GO IDs through both reverse 'is_a' and all relationships.""" all_lower = set() for lower in self.get_goterms_lower(): all_lower.add(lower.item_id) all_lower |= lower.get_all_lower() return all_lower

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def stop(self): """Halts the acquisition, this must be called before resetting acquisition""" try: self.aitask.stop() self.aotask.stop() pass except: print u"No task running" self.aitask = None self.aotask = None

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def operation_recorder(self): """ :class:`BaseOperationRecorder`: **Deprecated:** The operation recorder that was last added to the connection, or `None` if the connection does not currently have any recorders. *New in pywbem 0.9 as experimental. Deprecated since pywbem 0.12.* ...

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def dfsummary_made(self): """check if the summary table exists""" try: empty = self.dfsummary.empty except AttributeError: empty = True return not empty

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def list_requests(status=None): ''' List certificate requests made to CertCentral. You can filter by status: ``pending``, ``approved``, ``rejected`` CLI Example: .. code-block:: bash salt-run digicert.list_requests pending ''' if status: url = '{0}/request?status={1}'.form...

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def apply_same_chip_constraints(vertices_resources, nets, constraints): """Modify a set of vertices_resources, nets and constraints to account for all SameChipConstraints. To allow placement algorithms to handle SameChipConstraints without any special cases, Vertices identified in a SameChipConstraint ...

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def grad(self, X, *params): """ Return the gradient of the basis function for each parameter. Parameters ---------- X : ndarray (N, d) array of observations where N is the number of samples, and d is the dimensionality of X. *params : optional ...

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def wait_for_click(self, button, timeOut=10.0): """ Wait for a mouse click Usage: C{mouse.wait_for_click(self, button, timeOut=10.0)} @param button: they mouse button click to wait for as a button number, 1-9 @param timeOut: maximum time, in seconds, to wait for the key...

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def _fix_missing_tenant_id(self, context, body, key): """Will add the tenant_id to the context from body. It is assumed that the body must have a tenant_id because neutron core could never have gotten here otherwise. """ if not body: raise n_exc.BadRequest(resource=k...

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def search(self, **kwargs): """Searches for files/folders Args: \*\*kwargs (dict): A dictionary containing necessary parameters (check https://developers.box.com/docs/#search for list of parameters) Returns: dict. ...

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def read_cands(filename): """Read in the contents of a cands comb file""" import sre lines=file(filename).readlines() exps=[] cands=[] coo=[] for line in lines: if ( line[0:2]=="##" ) : break exps.append(line[2:].strip()) for line in lines: if ( ...

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def remove_prefix(self, auth, spec, recursive = False): """ Remove prefix matching `spec`. * `auth` [BaseAuth] AAA options. * `spec` [prefix_spec] Specifies prefixe to remove. * `recursive` [bool] When set to True, also remove ...

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def parse_comment(self, comment, filename, lineno, endlineno, include_paths=None, stripped=False): """ Returns a Comment given a string """ if not stripped and not self.__validate_c_comment(comment.strip()): return None title_offset = 0 ...

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def main(argv=None): """Send X10 commands when module is used from the command line. This uses syntax similar to sendCommands, for example: x10.py com2 A1 On, A2 Off, B All Off """ if len(argv): # join all the arguments together by spaces so that quotes # aren't required on the com...

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def lcsstr(self, src, tar): """Return the longest common substring of two strings. Longest common substring (LCSstr). Based on the code from https://en.wikibooks.org/wiki/Algorithm_Implementation/Strings/Longest_common_substring :cite:`Wikibooks:2018`. This is licensed ...

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def as_vartype(vartype): """Cast various inputs to a valid vartype object. Args: vartype (:class:`.Vartype`/str/set): Variable type. Accepted input values: * :class:`.Vartype.SPIN`, ``'SPIN'``, ``{-1, 1}`` * :class:`.Vartype.BINARY`, ``'BINARY'``, ``{0, 1}`` Re...

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def convert_elementwise_add( params, w_name, scope_name, inputs, layers, weights, names ): """ Convert elementwise addition. Args: params: dictionary with layer parameters w_name: name prefix in state_dict scope_name: pytorch scope name inputs: pytorch node inputs ...

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def pretty_repr(instance): """ A function assignable to the ``__repr__`` dunder method, so that the ``prettyprinter`` definition for the type is used to provide repr output. Usage: .. code:: python from prettyprinter import pretty_repr class MyClass: __repr__ = pretty_...

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def aseg_on_mri(mri_spec, aseg_spec, alpha_mri=1.0, alpha_seg=1.0, num_rows=2, num_cols=6, rescale_method='global', aseg_cmap='freesurfer', sub_cortical=False, annot=None, ...

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def get_expiration_seconds_v2(expiration): """Convert 'expiration' to a number of seconds in the future. :type expiration: Union[Integer, datetime.datetime, datetime.timedelta] :param expiration: Point in time when the signed URL should expire. :raises: :exc:`TypeError` when expiration is not a valid ...

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def buildhtml(self): """Build the HTML page Create the htmlheader with css / js Create html page """ self.buildcontent() self.buildhtmlheader() self.content = self._htmlcontent.decode('utf-8') # need to ensure unicode self._htmlcontent = self.template_page...

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def eval(w,t,x,msk,s): """ Pythia server-side computation of intermediate PRF output. @w: ensemble key selector (any string, e.g. webserver ID) @t: tweak (any string, e.g. user ID) @x: message (any string) @msk: Pythia server's master secret key @s: state value from Pythia server's key table...

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def create_from_dict(cls, src_dict, roi_skydir=None, rescale=False): """Create a source object from a python dictionary. Parameters ---------- src_dict : dict Dictionary defining the properties of the source. """ src_dict = copy.deepcopy(src_dict) src...

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