kejian/codesearchnet-python-rebalanced · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def drop_index(self, raw): """ Executes a drop index command. { "op" : "c", "ns" : "testdb.$cmd", "o" : { "dropIndexes" : "testcoll", "index" : "nuie_1" } } """ dbname = raw['ns'].split('.', 1)[0] collname = raw['o']['dropIndexes']...	[ "def", "drop_index", "(", "self", ",", "raw", ")", ":", "dbname", "=", "raw", "[", "'ns'", "]", ".", "split", "(", "'.'", ",", "1", ")", "[", "0", "]", "collname", "=", "raw", "[", "'o'", "]", "[", "'dropIndexes'", "]", "self", ".", "dest", "["...	34.181818	0.010363
def formatted_completion_sig(completion): """Regenerate signature for methods. Return just the name otherwise""" f_result = completion["name"] if is_basic_type(completion): # It's a raw type return f_result elif len(completion["typeInfo"]["paramSections"]) == 0: return f_result ...	[ "def", "formatted_completion_sig", "(", "completion", ")", ":", "f_result", "=", "completion", "[", "\"name\"", "]", "if", "is_basic_type", "(", "completion", ")", ":", "# It's a raw type", "return", "f_result", "elif", "len", "(", "completion", "[", "\"typeInfo\"...	39.384615	0.001908
def R_isrk(self, k): """ Function returns the inverse square root of R matrix on step k. """ ind = int(self.index[self.R_time_var_index, k]) R = self.R[:, :, ind] if (R.shape[0] == 1): # 1-D case handle simplier. No storage # of the result, just compute it e...	[ "def", "R_isrk", "(", "self", ",", "k", ")", ":", "ind", "=", "int", "(", "self", ".", "index", "[", "self", ".", "R_time_var_index", ",", "k", "]", ")", "R", "=", "self", ".", "R", "[", ":", ",", ":", ",", "ind", "]", "if", "(", "R", ".", ...	38.21875	0.001595
def last_seen_utc(self) -> Optional[datetime]: """Timestamp when the story has last been watched or None (UTC).""" if self._node['seen']: return datetime.utcfromtimestamp(self._node['seen'])	[ "def", "last_seen_utc", "(", "self", ")", "->", "Optional", "[", "datetime", "]", ":", "if", "self", ".", "_node", "[", "'seen'", "]", ":", "return", "datetime", ".", "utcfromtimestamp", "(", "self", ".", "_node", "[", "'seen'", "]", ")" ]	53.75	0.009174
def compile_format(self, log_format: str) -> Tuple[str, List[KeyMethod]]: """Translate log_format into form usable by modulo formatting All known atoms will be replaced with %s Also methods for formatting of those atoms will be added to _methods in appropriate order For example...	[ "def", "compile_format", "(", "self", ",", "log_format", ":", "str", ")", "->", "Tuple", "[", "str", ",", "List", "[", "KeyMethod", "]", "]", ":", "# list of (key, method) tuples, we don't use an OrderedDict as users", "# can repeat the same key more than once", "methods"...	40.731707	0.00117
async def process_frame(self, frame): """Update nodes via frame, usually received by house monitor.""" if isinstance(frame, FrameNodeStatePositionChangedNotification): if frame.node_id not in self.pyvlx.nodes: return node = self.pyvlx.nodes[frame.node_id] ...	[ "async", "def", "process_frame", "(", "self", ",", "frame", ")", ":", "if", "isinstance", "(", "frame", ",", "FrameNodeStatePositionChangedNotification", ")", ":", "if", "frame", ".", "node_id", "not", "in", "self", ".", "pyvlx", ".", "nodes", ":", "return",...	50.4375	0.002433
def _create_results_summary(self): """ Create the dataframe that displays the estimation results, and store it on the model instance. Returns ------- None. """ # Make sure we have all attributes needed to create the results summary needed_attribut...	[ "def", "_create_results_summary", "(", "self", ")", ":", "# Make sure we have all attributes needed to create the results summary", "needed_attributes", "=", "[", "\"params\"", ",", "\"standard_errors\"", ",", "\"tvalues\"", ",", "\"pvalues\"", ",", "\"robust_std_errs\"", ",", ...	39.771429	0.001403
def add_element(self, location, element, delete_elem=False): """ Create an entry located at ``location``. Args: location: String or :class:`LocationDescriptor` to describe a "separator location" (i.e. dir1/dir2/dir3 for instance). element: Element...	[ "def", "add_element", "(", "self", ",", "location", ",", "element", ",", "delete_elem", "=", "False", ")", ":", "return", "self", ".", "_create_entry", "(", "location", ",", "element", ",", "unique", "=", "False", ",", "delete_element", "=", "delete_elem", ...	43.55	0.011236
def triangle_normal(a,b,c): ''' triangle_normal(a, b, c) yields the normal vector of the triangle whose vertices are given by the points a, b, and c. If the points are 2D points, then 3D normal vectors are still yielded, that are always (0,0,1) or (0,0,-1). This function auto-threads over matrices, ...	[ "def", "triangle_normal", "(", "a", ",", "b", ",", "c", ")", ":", "(", "a", ",", "b", ",", "c", ")", "=", "[", "np", ".", "asarray", "(", "x", ")", "for", "x", "in", "(", "a", ",", "b", ",", "c", ")", "]", "if", "len", "(", "a", ".", ...	49.5	0.019815
def setOptions( self, options ): """ Sets the tag option list for this widget. If used, tags need to be found within the list of options when added. :param options \| [<str>, ..] """ self._options = map(str, options) if ( options ):...	[ "def", "setOptions", "(", "self", ",", "options", ")", ":", "self", ".", "_options", "=", "map", "(", "str", ",", "options", ")", "if", "(", "options", ")", ":", "completer", "=", "QCompleter", "(", "options", ",", "self", ")", "completer", ".", "set...	34.6	0.015009
def flatten(nested_iterable): """ Flattens arbitrarily nested lists/tuples. Code partially taken from https://stackoverflow.com/a/10824420. Parameters ---------- nested_iterable A list or tuple of arbitrarily nested values. Yields ------ any Non-list and non-tuple ...	[ "def", "flatten", "(", "nested_iterable", ")", ":", "# don't just check if something is iterable here, because then strings", "# and arrays will be split into their characters and components", "if", "not", "isinstance", "(", "nested_iterable", ",", "(", "list", ",", "tuple", ")",...	26.928571	0.00128
def _section_execution_order(self, section, iterargs , reverse=False , custom_order=None , explicit_checks: Iterable = None , exclude_checks: Iterable = None): """ order must: a) contain...	[ "def", "_section_execution_order", "(", "self", ",", "section", ",", "iterargs", ",", "reverse", "=", "False", ",", "custom_order", "=", "None", ",", "explicit_checks", ":", "Iterable", "=", "None", ",", "exclude_checks", ":", "Iterable", "=", "None", ")", "...	36.612903	0.009867
def map(self): """Perform a function on every item in an iterable.""" with Pool(self.cpu_count) as pool: pool.map(self._func, self._iterable) pool.close() return True	[ "def", "map", "(", "self", ")", ":", "with", "Pool", "(", "self", ".", "cpu_count", ")", "as", "pool", ":", "pool", ".", "map", "(", "self", ".", "_func", ",", "self", ".", "_iterable", ")", "pool", ".", "close", "(", ")", "return", "True" ]	34.833333	0.009346
def write_Track(file, track, bpm=120, repeat=0, verbose=False): """Write a mingus.Track to a MIDI file. Write the name to the file and set the instrument if the instrument has the attribute instrument_nr, which represents the MIDI instrument number. The class MidiInstrument in mingus.containers.Instrum...	[ "def", "write_Track", "(", "file", ",", "track", ",", "bpm", "=", "120", ",", "repeat", "=", "0", ",", "verbose", "=", "False", ")", ":", "m", "=", "MidiFile", "(", ")", "t", "=", "MidiTrack", "(", "bpm", ")", "m", ".", "tracks", "=", "[", "t",...	34.866667	0.001862
def recursive_model_update(model, props): """ Recursively updates attributes on a model including other models. If the type of the new model matches the old model properties are simply updated, otherwise the model is replaced. """ updates = {} valid_properties = model.properties_with_values(...	[ "def", "recursive_model_update", "(", "model", ",", "props", ")", ":", "updates", "=", "{", "}", "valid_properties", "=", "model", ".", "properties_with_values", "(", ")", "for", "k", ",", "v", "in", "props", ".", "items", "(", ")", ":", "if", "isinstanc...	41.052632	0.001253
def move_identity(db, from_id, to_uuid): """Move an identity to a unique identity. This function shifts the identity identified by 'from_id' to the unique identity 'to_uuid'. When 'to_uuid' is the unique identity that is currently related to 'from_id', the action does not have any effect. In ...	[ "def", "move_identity", "(", "db", ",", "from_id", ",", "to_uuid", ")", ":", "with", "db", ".", "connect", "(", ")", "as", "session", ":", "fid", "=", "find_identity", "(", "session", ",", "from_id", ")", "tuid", "=", "find_unique_identity", "(", "sessio...	36.081081	0.000729
def angle_subtended(ell, **kwargs): """ Compute the half angle subtended (or min and max angles) for an offset elliptical conic from the origin or an arbitrary viewpoint. kwargs: tangent Return tangent instead of angle (default false) viewpoint Defaults to origin """ retu...	[ "def", "angle_subtended", "(", "ell", ",", "", "", "kwargs", ")", ":", "return_tangent", "=", "kwargs", ".", "pop", "(", "'tangent'", ",", "False", ")", "con", ",", "transform", ",", "offset", "=", "ell", ".", "projection", "(", "", "", "kwargs", ...	32.421053	0.009464
def make_directory(path): """ Make a directory and any intermediate directories that don't already exist. This function handles the case where two threads try to create a directory at once. """ if not os.path.exists(path): # concurrent writes that try to create the same dir can fail ...	[ "def", "make_directory", "(", "path", ")", ":", "if", "not", "os", ".", "path", ".", "exists", "(", "path", ")", ":", "# concurrent writes that try to create the same dir can fail", "try", ":", "os", ".", "makedirs", "(", "path", ")", "except", "OSError", "as"...	29.75	0.002037
def authorize(self): """ Use the magic of a unicorn and summon the set-top box to listen to us. / ,.. / ,' '; ,,.__ _,' /'; . :',' ~~~~ '. '~ :' ( ) )::, '. '. .=----=..-~ .;'...	[ "def", "authorize", "(", "self", ")", ":", "# Read the version of the set-top box and write it back. Why? I've no", "# idea.", "version", "=", "self", ".", "con", ".", "makefile", "(", ")", ".", "readline", "(", ")", "self", ".", "con", ".", "send", "(", "versio...	33.536585	0.001413
def get(self, key, value=None): "x.get(k[,d]) -> x[k] if k in x, else d. d defaults to None." _key = self._prepare_key(key) prefix, node = self._get_node_by_key(_key) if prefix==_key and node.value is not None: return self._unpickle_value(node.value) else: ...	[ "def", "get", "(", "self", ",", "key", ",", "value", "=", "None", ")", ":", "_key", "=", "self", ".", "_prepare_key", "(", "key", ")", "prefix", ",", "node", "=", "self", ".", "_get_node_by_key", "(", "_key", ")", "if", "prefix", "==", "_key", "and...	40.75	0.009009
def set_bytes_at_offset(self, offset, data): """Overwrite the bytes at the given file offset with the given string. Return True if successful, False otherwise. It can fail if the offset is outside the file's boundaries. """ if not isinstance(data, bytes): raise Type...	[ "def", "set_bytes_at_offset", "(", "self", ",", "offset", ",", "data", ")", ":", "if", "not", "isinstance", "(", "data", ",", "bytes", ")", ":", "raise", "TypeError", "(", "'data should be of type: bytes'", ")", "if", "0", "<=", "offset", "<", "len", "(", ...	34.125	0.008913
def histogram(self, stat, value, tags=None): """Report a histogram.""" self._log('histogram', stat, value, tags)	[ "def", "histogram", "(", "self", ",", "stat", ",", "value", ",", "tags", "=", "None", ")", ":", "self", ".", "_log", "(", "'histogram'", ",", "stat", ",", "value", ",", "tags", ")" ]	42	0.015625
def bin2hexline(data, add_addr=True, width=16): """ Format binary data to a Hex-Editor like format... >>> data = bytearray([i for i in range(256)]) >>> print('\\n'.join(bin2hexline(data, width=16))) 0000 00 01 02 03 04 05 06 07 08 09 0a 0b 0c 0d 0e 0f ................ 0016 10 11 12 13 14 15 16 ...	[ "def", "bin2hexline", "(", "data", ",", "add_addr", "=", "True", ",", "width", "=", "16", ")", ":", "data", "=", "bytearray", "(", "data", ")", "# same as string.printable but without \\t\\n\\r\\v\\f ;)", "printable", "=", "string", ".", "digits", "+", "string",...	40.065789	0.001282
def diff_sizes(a, b, progressbar=None): """Return list of tuples where sizes differ. Tuple structure: (identifier, size in a, size in b) Assumes list of identifiers in a and b are identical. :param a: first :class:`dtoolcore.DataSet` :param b: second :class:`dtoolcore.DataSet` :returns: l...	[ "def", "diff_sizes", "(", "a", ",", "b", ",", "progressbar", "=", "None", ")", ":", "difference", "=", "[", "]", "for", "i", "in", "a", ".", "identifiers", ":", "a_size", "=", "a", ".", "item_properties", "(", "i", ")", "[", "\"size_in_bytes\"", "]",...	29.304348	0.001437
def check_data_port_connection(self, check_data_port): """Checks the connection validity of a data port The method is called by a child state to check the validity of a data port in case it is connected with data flows. The data port does not belong to 'self', but to one of self.states. ...	[ "def", "check_data_port_connection", "(", "self", ",", "check_data_port", ")", ":", "for", "data_flow", "in", "self", ".", "data_flows", ".", "values", "(", ")", ":", "# Check whether the data flow connects the given port", "from_port", "=", "self", ".", "get_data_por...	62.333333	0.008277
def on_value_change(self, picker, old, new): """ Set the checked property based on the checked state of all the children """ d = self.declaration with self.widget.setValue.suppressed(): d.value = new	[ "def", "on_value_change", "(", "self", ",", "picker", ",", "old", ",", "new", ")", ":", "d", "=", "self", ".", "declaration", "with", "self", ".", "widget", ".", "setValue", ".", "suppressed", "(", ")", ":", "d", ".", "value", "=", "new" ]	32.125	0.011364
def expect(self, pattern, timeout=-1): """Waits on the given pattern to appear in std_out""" if self.blocking: raise RuntimeError("expect can only be used on non-blocking commands.") try: self.subprocess.expect(pattern=pattern, timeout=timeout) except pexpect.EO...	[ "def", "expect", "(", "self", ",", "pattern", ",", "timeout", "=", "-", "1", ")", ":", "if", "self", ".", "blocking", ":", "raise", "RuntimeError", "(", "\"expect can only be used on non-blocking commands.\"", ")", "try", ":", "self", ".", "subprocess", ".", ...	33	0.00885
def _constraint_lb_and_ub_to_gurobi_sense_rhs_and_range_value(lb, ub): """Helper function used by Constraint and Model""" if lb is None and ub is None: raise Exception("Free constraint ...") elif lb is None: sense = '<' rhs = float(ub) range_value = 0. elif ub is None: ...	[ "def", "_constraint_lb_and_ub_to_gurobi_sense_rhs_and_range_value", "(", "lb", ",", "ub", ")", ":", "if", "lb", "is", "None", "and", "ub", "is", "None", ":", "raise", "Exception", "(", "\"Free constraint ...\"", ")", "elif", "lb", "is", "None", ":", "sense", "...	28.869565	0.001458
def put(self, item): """Adds the passed in item object to the queue and calls :func:`flush` if the size of the queue is larger than :func:`max_queue_length`. This method does nothing if the passed in item is None. Args: item (:class:`contracts.Envelope`) item the telemetry envelope ...	[ "def", "put", "(", "self", ",", "item", ")", ":", "if", "not", "item", ":", "return", "self", ".", "_queue", ".", "put", "(", "item", ")", "if", "self", ".", "_queue", ".", "qsize", "(", ")", ">=", "self", ".", "_max_queue_length", ":", "self", "...	42	0.009709
def merge_dict_of_lists(adict, indices, pop_later=True, copy=True): """Extend the within a dict of lists. The indices will indicate which list have to be extended by which other list. Parameters ---------- adict: OrderedDict An ordered dictionary of lists indices: list or tuple of 2 it...	[ "def", "merge_dict_of_lists", "(", "adict", ",", "indices", ",", "pop_later", "=", "True", ",", "copy", "=", "True", ")", ":", "def", "check_indices", "(", "idxs", ",", "x", ")", ":", "for", "i", "in", "chain", "(", "*", "idxs", ")", ":", "if", "i"...	29.686275	0.000639
def long_poll_notifications(self, **kwargs): # noqa: E501 """Get notifications using Long Poll # noqa: E501 In this case, notifications are delivered through HTTP long poll requests. The HTTP request is kept open until an event notification or a batch of event notifications are delivered to the clien...	[ "def", "long_poll_notifications", "(", "self", ",", "", "", "kwargs", ")", ":", "# noqa: E501", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'asynchronous'", ")", ":", "return", "self", ".", "long_poll_notifi...	124.05	0.0008
def print_dependencies(_run): """Print the detected source-files and dependencies.""" print('Dependencies:') for dep in _run.experiment_info['dependencies']: pack, _, version = dep.partition('==') print(' {:<20} == {}'.format(pack, version)) print('\nSources:') for source, digest i...	[ "def", "print_dependencies", "(", "_run", ")", ":", "print", "(", "'Dependencies:'", ")", "for", "dep", "in", "_run", ".", "experiment_info", "[", "'dependencies'", "]", ":", "pack", ",", "_", ",", "version", "=", "dep", ".", "partition", "(", "'=='", ")...	38.315789	0.00134
def relax_AX(self): """The parent class method that this method overrides only implements the relaxation step for the variables of the baseline consensus algorithm. This method calls the overridden method and then implements the relaxation step for the additional variables requir...	[ "def", "relax_AX", "(", "self", ")", ":", "super", "(", "ConvCnstrMODMaskDcpl_Consensus", ",", "self", ")", ".", "relax_AX", "(", ")", "self", ".", "AX1nr", "=", "sl", ".", "irfftn", "(", "sl", ".", "inner", "(", "self", ".", "Zf", ",", "self", ".", ...	45.777778	0.002378
def csrf_token(): """ Get csrf token or create new one """ from uliweb import request, settings from uliweb.utils.common import safe_str v = {} token_name = settings.CSRF.cookie_token_name if not request.session.deleted and request.session.get(token_name): v = request.sessio...	[ "def", "csrf_token", "(", ")", ":", "from", "uliweb", "import", "request", ",", "settings", "from", "uliweb", ".", "utils", ".", "common", "import", "safe_str", "v", "=", "{", "}", "token_name", "=", "settings", ".", "CSRF", ".", "cookie_token_name", "if",...	31.52	0.008621
def _position_and_velocity_TEME_km(self, t): """Return the raw true equator mean equinox (TEME) vectors from SGP4. Returns a tuple of NumPy arrays ``([x y z], [xdot ydot zdot])`` expressed in kilometers and kilometers per second. Note that we assume the TLE epoch to be a UTC date, per ...	[ "def", "_position_and_velocity_TEME_km", "(", "self", ",", "t", ")", ":", "sat", "=", "self", ".", "model", "minutes_past_epoch", "=", "(", "t", ".", "_utc_float", "(", ")", "-", "sat", ".", "jdsatepoch", ")", "*", "1440.0", "if", "getattr", "(", "minute...	41.695652	0.002039
def get_term(self,term_id): """ Returns the term object for the supplied identifier @type term_id: string @param term_id: term identifier """ if term_id in self.idx: return Cterm(self.idx[term_id],self.type) else: return None	[ "def", "get_term", "(", "self", ",", "term_id", ")", ":", "if", "term_id", "in", "self", ".", "idx", ":", "return", "Cterm", "(", "self", ".", "idx", "[", "term_id", "]", ",", "self", ".", "type", ")", "else", ":", "return", "None" ]	29.6	0.013115
def wait(self, timeout_s: float = None) -> int: """ Wait for up to ``timeout_s`` for the child process to finish. Args: timeout_s: maximum time to wait or ``None`` to wait forever Returns: process return code; or ``0`` if it wasn't running, or ``1`` if ...	[ "def", "wait", "(", "self", ",", "timeout_s", ":", "float", "=", "None", ")", "->", "int", ":", "if", "not", "self", ".", "running", ":", "return", "0", "retcode", "=", "self", ".", "process", ".", "wait", "(", "timeout", "=", "timeout_s", ")", "# ...	36.363636	0.001623
def _decode_filename_to_unicode(f): '''Get bytestring filename and return unicode. First, try to decode from default file system encoding If that fails, use ``chardet`` module to guess encoding. As a last resort, try to decode as utf-8. If the argument already is unicode, return as is''' log.d...	[ "def", "_decode_filename_to_unicode", "(", "f", ")", ":", "log", ".", "debug", "(", "'_decode_filename_to_unicode(%s)'", ",", "repr", "(", "f", ")", ")", "if", "isinstance", "(", "f", ",", "unicode", ")", ":", "return", "f", "try", ":", "return", "f", "....	38.5	0.00149
def find_by_id(self, repoid): """ Returns the repo with the specified <repoid> """ for row in self.jsondata: if repoid == row["repoid"]: return self._infofromdict(row)	[ "def", "find_by_id", "(", "self", ",", "repoid", ")", ":", "for", "row", "in", "self", ".", "jsondata", ":", "if", "repoid", "==", "row", "[", "\"repoid\"", "]", ":", "return", "self", ".", "_infofromdict", "(", "row", ")" ]	31.571429	0.008811
def collect(path, no_input): '''Collect static files''' if exists(path): msg = '"%s" directory already exists and will be erased' log.warning(msg, path) if not no_input: click.confirm('Are you sure?', abort=True) log.info('Deleting static directory "%s"', path) ...	[ "def", "collect", "(", "path", ",", "no_input", ")", ":", "if", "exists", "(", "path", ")", ":", "msg", "=", "'\"%s\" directory already exists and will be erased'", "log", ".", "warning", "(", "msg", ",", "path", ")", "if", "not", "no_input", ":", "click", ...	37.666667	0.000719
def alignment_correcter(self, alignment_file_list, output_file_name, filter_minimum=None): ''' Remove lower case insertions in alignment outputs from HMM align. Give a list of alignments, and an output file name, and each alignment will be corrected, and writt...	[ "def", "alignment_correcter", "(", "self", ",", "alignment_file_list", ",", "output_file_name", ",", "filter_minimum", "=", "None", ")", ":", "corrected_sequences", "=", "{", "}", "for", "alignment_file", "in", "alignment_file_list", ":", "insert_list", "=", "[", ...	53.169492	0.008764
def sequence_to_dt64ns(data, dtype=None, copy=False, tz=None, dayfirst=False, yearfirst=False, ambiguous='raise', int_as_wall_time=False): """ Parameters ---------- data : list-like dtype : dtype, str, or None, default None cop...	[ "def", "sequence_to_dt64ns", "(", "data", ",", "dtype", "=", "None", ",", "copy", "=", "False", ",", "tz", "=", "None", ",", "dayfirst", "=", "False", ",", "yearfirst", "=", "False", ",", "ambiguous", "=", "'raise'", ",", "int_as_wall_time", "=", "False"...	34.348485	0.000214
def remove_too_short(utterances: List[Utterance], _winlen=25, winstep=10) -> List[Utterance]: """ Removes utterances that will probably have issues with CTC because of the number of frames being less than the number of tokens in the transcription. Assuming char tokenization to minimize ...	[ "def", "remove_too_short", "(", "utterances", ":", "List", "[", "Utterance", "]", ",", "_winlen", "=", "25", ",", "winstep", "=", "10", ")", "->", "List", "[", "Utterance", "]", ":", "def", "is_too_short", "(", "utterance", ":", "Utterance", ")", "->", ...	43.5	0.001608
def port_pair(self): """The port and it's transport as a pair""" if self.transport is NotSpecified: return (self.port, "tcp") else: return (self.port, self.transport)	[ "def", "port_pair", "(", "self", ")", ":", "if", "self", ".", "transport", "is", "NotSpecified", ":", "return", "(", "self", ".", "port", ",", "\"tcp\"", ")", "else", ":", "return", "(", "self", ".", "port", ",", "self", ".", "transport", ")" ]	34.833333	0.009346
def find_sanitizer_from_module(module_name, function_name): """ Attempts to find sanitizer function from given module. If the module cannot be imported, or function with given name does not exist in it, nothing will be returned by this method. Otherwise the found sanitizer functi...	[ "def", "find_sanitizer_from_module", "(", "module_name", ",", "function_name", ")", ":", "try", ":", "module", "=", "importlib", ".", "import_module", "(", "module_name", ")", "except", "ImportError", ":", "return", "None", "# Look for the function inside the module. At...	37.372093	0.001213
def bar(h1: Histogram1D, **kwargs) -> dict: """Bar plot of 1D histogram. Parameters ---------- lw : float Width of the line between bars alpha : float Opacity of the bars hover_alpha: float Opacity of the bars when hover on """ # TODO: Enable collections # TO...	[ "def", "bar", "(", "h1", ":", "Histogram1D", ",", "", "", "kwargs", ")", "->", "dict", ":", "# TODO: Enable collections", "# TODO: Enable legend", "vega", "=", "_create_figure", "(", "kwargs", ")", "_add_title", "(", "h1", ",", "vega", ",", "kwargs", ")", ...	28.52381	0.001076
def print_upper_triangular_matrix_as_complete(matrix): """Prints a CVRP data dict upper triangular matrix as a normal matrix Doesn't print headers. Arguments --------- matrix : dict Description """ for i in sorted(matrix.keys()): for j in sorted(matrix.keys...	[ "def", "print_upper_triangular_matrix_as_complete", "(", "matrix", ")", ":", "for", "i", "in", "sorted", "(", "matrix", ".", "keys", "(", ")", ")", ":", "for", "j", "in", "sorted", "(", "matrix", ".", "keys", "(", ")", ")", ":", "a", ",", "b", "=", ...	21.9	0.008753
def reshape_like_all_dims(a, b): """Reshapes a to match the shape of b.""" ret = tf.reshape(a, tf.shape(b)) if not tf.executing_eagerly(): ret.set_shape(b.get_shape()) return ret	[ "def", "reshape_like_all_dims", "(", "a", ",", "b", ")", ":", "ret", "=", "tf", ".", "reshape", "(", "a", ",", "tf", ".", "shape", "(", "b", ")", ")", "if", "not", "tf", ".", "executing_eagerly", "(", ")", ":", "ret", ".", "set_shape", "(", "b", ...	30.833333	0.026316
def write_tree_newick(self, filename, hide_rooted_prefix=False): '''Write this ``Tree`` to a Newick file Args: ``filename`` (``str``): Path to desired output file (plain-text or gzipped) ''' if not isinstance(filename, str): raise TypeError("filename must be a st...	[ "def", "write_tree_newick", "(", "self", ",", "filename", ",", "hide_rooted_prefix", "=", "False", ")", ":", "if", "not", "isinstance", "(", "filename", ",", "str", ")", ":", "raise", "TypeError", "(", "\"filename must be a str\"", ")", "treestr", "=", "self",...	45.055556	0.0157
def values(self, key_type=None): """ Returns a copy of the dictionary's values. @param key_type if specified, only values pointed by keys of this type will be returned. Otherwise list of all values contained in this dictionary will be returned.""" if(key_type is not None...	[ "def", "values", "(", "self", ",", "key_type", "=", "None", ")", ":", "if", "(", "key_type", "is", "not", "None", ")", ":", "all_items", "=", "{", "}", "# in order to preserve keys() type (dict_values for python3) \r", "keys_used", "=", "set", "(", ")", "direc...	55.875	0.009901
def relop_code(self, relop, operands_type): """Returns code for relational operator relop - relational operator operands_type - int or unsigned """ code = self.RELATIONAL_DICT[relop] offset = 0 if operands_type == SharedData.TYPES.INT else len(SharedData.RELAT...	[ "def", "relop_code", "(", "self", ",", "relop", ",", "operands_type", ")", ":", "code", "=", "self", ".", "RELATIONAL_DICT", "[", "relop", "]", "offset", "=", "0", "if", "operands_type", "==", "SharedData", ".", "TYPES", ".", "INT", "else", "len", "(", ...	44.875	0.008197
def copyNodeList(self, node): """Do a recursive copy of the node list. """ if node is None: node__o = None else: node__o = node._o ret = libxml2mod.xmlDocCopyNodeList(self._o, node__o) if ret is None:raise treeError('xmlDocCopyNodeList() failed') __tmp = xmlNode(_obj=ret)...	[ "def", "copyNodeList", "(", "self", ",", "node", ")", ":", "if", "node", "is", "None", ":", "node__o", "=", "None", "else", ":", "node__o", "=", "node", ".", "_o", "ret", "=", "libxml2mod", ".", "xmlDocCopyNodeList", "(", "self", ".", "_o", ",", "nod...	41.75	0.017595
def make_parser(parser_creator=None, **kwargs): """Returns a base argument parser for the ray.tune tool. Args: parser_creator: A constructor for the parser class. kwargs: Non-positional args to be passed into the parser class constructor. """ if parser_creator: pars...	[ "def", "make_parser", "(", "parser_creator", "=", "None", ",", "", "", "kwargs", ")", ":", "if", "parser_creator", ":", "parser", "=", "parser_creator", "(", "", "", "kwargs", ")", "else", ":", "parser", "=", "argparse", ".", "ArgumentParser", "(", "...	36.455224	0.000199
def export_epoch_file(stimfunction, filename, tr_duration, temporal_resolution=100.0 ): """ Output an epoch file, necessary for some inputs into brainiak This takes in the time course of stimulus events and outputs the epoc...	[ "def", "export_epoch_file", "(", "stimfunction", ",", "filename", ",", "tr_duration", ",", "temporal_resolution", "=", "100.0", ")", ":", "# Cycle through the participants, different entries in the list", "epoch_file", "=", "[", "0", "]", "*", "len", "(", "stimfunction"...	40.482759	0.000208
def _catalog_check(self, cat_name, append=False): """ Check to see if the name of the ingested catalog is valid Parameters ---------- cat_name: str The name of the catalog in the Catalog object append: bool Append the catalog rather than r...	[ "def", "_catalog_check", "(", "self", ",", "cat_name", ",", "append", "=", "False", ")", ":", "good", "=", "True", "# Make sure the attribute name is good", "if", "cat_name", "[", "0", "]", ".", "isdigit", "(", ")", ":", "print", "(", "\"No names beginning wit...	30.103448	0.008879
def delete_tags(tags, name=None, group_id=None, vpc_name=None, vpc_id=None, region=None, key=None, keyid=None, profile=None): ''' deletes tags from a security group .. versionadde...	[ "def", "delete_tags", "(", "tags", ",", "name", "=", "None", ",", "group_id", "=", "None", ",", "vpc_name", "=", "None", ",", "vpc_id", "=", "None", ",", "region", "=", "None", ",", "key", "=", "None", ",", "keyid", "=", "None", ",", "profile", "="...	25.734375	0.001754
def _index_sub(self, uri_list, num, batch_num): """ Converts a list of uris to elasticsearch json objects args: uri_list: list of uris to convert num: the ending count within the batch batch_num: the batch number """ bname = '%s-%s' % (batch_n...	[ "def", "_index_sub", "(", "self", ",", "uri_list", ",", "num", ",", "batch_num", ")", ":", "bname", "=", "'%s-%s'", "%", "(", "batch_num", ",", "num", ")", "log", ".", "debug", "(", "\"batch_num '%s' starting es_json conversion\"", ",", "bname", ")", "qry_da...	39.840909	0.00167
def create_namespaced_ingress(self, namespace, body, **kwargs): # noqa: E501 """create_namespaced_ingress # noqa: E501 create an Ingress # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> ...	[ "def", "create_namespaced_ingress", "(", "self", ",", "namespace", ",", "body", ",", "", "", "kwargs", ")", ":", "# noqa: E501", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async_req'", ")", ":", "return"...	61	0.001291
def startDrag(self, dragData): """ Starts a new drag with the inputed data. :param dragData \| <dict> """ # create the mime data mimeData = QMimeData() for key, value in dragData.items(): mimeData.setData('application/x-%s' % key,...	[ "def", "startDrag", "(", "self", ",", "dragData", ")", ":", "# create the mime data\r", "mimeData", "=", "QMimeData", "(", ")", "for", "key", ",", "value", "in", "dragData", ".", "items", "(", ")", ":", "mimeData", ".", "setData", "(", "'application/x-%s'", ...	31.6	0.008197
def in_attack_range_of(self, unit: Unit, bonus_distance: Union[int, float] = 0) -> "Units": """ Filters units that are in attack range of the unit in parameter """ return self.filter(lambda x: unit.target_in_range(x, bonus_distance=bonus_distance))	[ "def", "in_attack_range_of", "(", "self", ",", "unit", ":", "Unit", ",", "bonus_distance", ":", "Union", "[", "int", ",", "float", "]", "=", "0", ")", "->", "\"Units\"", ":", "return", "self", ".", "filter", "(", "lambda", "x", ":", "unit", ".", "tar...	87.333333	0.015152
def get_model_from_path_string(root_model, path): """ Return a model class for a related model root_model is the class of the initial model path is like foo__bar where bar is related to foo """ for path_section in path.split('__'): if path_section: try: field, mod...	[ "def", "get_model_from_path_string", "(", "root_model", ",", "path", ")", ":", "for", "path_section", "in", "path", ".", "split", "(", "'__'", ")", ":", "if", "path_section", ":", "try", ":", "field", ",", "model", ",", "direct", ",", "m2m", "=", "_get_f...	40.217391	0.002112
def rjust_text(text, width=80, indent=0, subsequent=None): """Wrap text and adjust it to right border. Same as L{wrap_text} with the difference that the text is aligned against the right text border. Args: text (str): Text to wrap and align. width (int): Maximum number of chara...	[ "def", "rjust_text", "(", "text", ",", "width", "=", "80", ",", "indent", "=", "0", ",", "subsequent", "=", "None", ")", ":", "text", "=", "re", ".", "sub", "(", "r\"\\s+\"", ",", "\" \"", ",", "text", ")", ".", "strip", "(", ")", "if", "subseque...	37.5	0.001083
def get_exporter(obj, name): """ Get an exporter for the :param obj: object to export :type obj: :class:`Component <cqparts.Component>` :param name: registered name of exporter :type name: :class:`str` :return: an exporter instance of the given type :rtype: :class:`Exporter` :raises...	[ "def", "get_exporter", "(", "obj", ",", "name", ")", ":", "if", "name", "not", "in", "exporter_index", ":", "raise", "TypeError", "(", "(", "\"exporter type '%s' is not registered: \"", "%", "name", ")", "+", "(", "\"registered types: %r\"", "%", "sorted", "(", ...	31.68	0.001225
def validate(node, source): """Call this function to validate an AST.""" # TODO: leaving strict checking off to support insert_grad_of lf = LanguageFence(source, strict=False) lf.visit(node) return node	[ "def", "validate", "(", "node", ",", "source", ")", ":", "# TODO: leaving strict checking off to support insert_grad_of", "lf", "=", "LanguageFence", "(", "source", ",", "strict", "=", "False", ")", "lf", ".", "visit", "(", "node", ")", "return", "node" ]	34.5	0.028302
def cleanup_classes(rdf): """Remove unnecessary class definitions: definitions of SKOS classes or unused classes. If a class is also a skos:Concept or skos:Collection, remove the 'classness' of it but leave the Concept/Collection.""" for t in (OWL.Class, RDFS.Class): for cl in rdf.subjects...	[ "def", "cleanup_classes", "(", "rdf", ")", ":", "for", "t", "in", "(", "OWL", ".", "Class", ",", "RDFS", ".", "Class", ")", ":", "for", "cl", "in", "rdf", ".", "subjects", "(", "RDF", ".", "type", ",", "t", ")", ":", "# SKOS classes may be safely rem...	49.90625	0.000614
def find_type(self, txt): """ top level function used to simply return the ONE ACTUAL string used for data types """ searchString = txt.upper() match = 'Unknown' for i in self.lst_type: if searchString in i: match = i return ma...	[ "def", "find_type", "(", "self", ",", "txt", ")", ":", "searchString", "=", "txt", ".", "upper", "(", ")", "match", "=", "'Unknown'", "for", "i", "in", "self", ".", "lst_type", ":", "if", "searchString", "in", "i", ":", "match", "=", "i", "return", ...	28.454545	0.009288
def all_subs(bounds): """given a list of tuples specifying the bounds of an array, all_subs() returns a list of all the tuples of subscripts for that array.""" idx_list = [] for i in range(len(bounds)): this_dim = bounds[i] lo,hi = this_dim[0],this_dim[1] # bounds for this dimension...	[ "def", "all_subs", "(", "bounds", ")", ":", "idx_list", "=", "[", "]", "for", "i", "in", "range", "(", "len", "(", "bounds", ")", ")", ":", "this_dim", "=", "bounds", "[", "i", "]", "lo", ",", "hi", "=", "this_dim", "[", "0", "]", ",", "this_di...	41	0.008677
def simEvalCond(simulator, *conds): """ Evaluate list of values as condition """ _cond = True _vld = True for v in conds: val = bool(v.val) fullVld = v.vldMask == 1 if fullVld: if not val: return False, True else: return Fal...	[ "def", "simEvalCond", "(", "simulator", ",", "*", "conds", ")", ":", "_cond", "=", "True", "_vld", "=", "True", "for", "v", "in", "conds", ":", "val", "=", "bool", "(", "v", ".", "val", ")", "fullVld", "=", "v", ".", "vldMask", "==", "1", "if", ...	20.947368	0.002404
def filter(self, datasource_type, datasource_id, column): """ Endpoint to retrieve values for specified column. :param datasource_type: Type of datasource e.g. table :param datasource_id: Datasource id :param column: Column name to retrieve values for :return: ""...	[ "def", "filter", "(", "self", ",", "datasource_type", ",", "datasource_id", ",", "column", ")", ":", "# TODO: Cache endpoint by user, datasource and column", "datasource", "=", "ConnectorRegistry", ".", "get_datasource", "(", "datasource_type", ",", "datasource_id", ",", ...	40.181818	0.00221
def generate_and_run(simulation, simulator, network=None, return_results=False, base_dir=None, target_dir=None, num_processors=1): """ Generates the network in the specified simulato...	[ "def", "generate_and_run", "(", "simulation", ",", "simulator", ",", "network", "=", "None", ",", "return_results", "=", "False", ",", "base_dir", "=", "None", ",", "target_dir", "=", "None", ",", "num_processors", "=", "1", ")", ":", "if", "network", "=="...	45.574879	0.013329
def types_strict(instance): """Ensure that no custom object types are used, but only the official ones from the specification. """ if instance['type'] not in enums.TYPES: yield JSONError("Object type '%s' is not one of those defined in the" " specification." % instance['t...	[ "def", "types_strict", "(", "instance", ")", ":", "if", "instance", "[", "'type'", "]", "not", "in", "enums", ".", "TYPES", ":", "yield", "JSONError", "(", "\"Object type '%s' is not one of those defined in the\"", "\" specification.\"", "%", "instance", "[", "'type...	51.066667	0.001282
def render_to_message(self, extra_context=None, **kwargs): """ Renders and returns an unsent message with the provided context. Any extra keyword arguments passed will be passed through as keyword arguments to the message constructor. :param extra_context: Any additional contex...	[ "def", "render_to_message", "(", "self", ",", "extra_context", "=", "None", ",", "", "", "kwargs", ")", ":", "if", "extra_context", "is", "None", ":", "extra_context", "=", "{", "}", "# Ensure our custom headers are added to the underlying message class.", "kwargs",...	37.625	0.00216
def logpdf_link(self, link_f, y, Y_metadata=None): """ :param link_f: latent variables (link(f)) :type link_f: Nx1 array :param y: data :type y: Nx1 array :param Y_metadata: includes censoring information in dictionary key 'censored' :returns: likelihood evaluated...	[ "def", "logpdf_link", "(", "self", ",", "link_f", ",", "y", ",", "Y_metadata", "=", "None", ")", ":", "assert", "np", ".", "atleast_1d", "(", "link_f", ")", ".", "shape", "==", "np", ".", "atleast_1d", "(", "y", ")", ".", "shape", "c", "=", "np", ...	44.052632	0.011696
def mysql(host, user, passwd, db, charset): """Set MySQL/MariaDB connection""" connection_string = database.set_mysql_connection(host=host, user=user, passwd=passwd, db=db, charset=charset) test_connection(connection_string)	[ "def", "mysql", "(", "host", ",", "user", ",", "passwd", ",", "db", ",", "charset", ")", ":", "connection_string", "=", "database", ".", "set_mysql_connection", "(", "host", "=", "host", ",", "user", "=", "user", ",", "passwd", "=", "passwd", ",", "db"...	58.25	0.008475
def update_id(self, sequence_id=None): """Alter the sequence id, and all of the names and ids derived from it. This often needs to be done after an IntegrityError in a multiprocessing run""" if sequence_id: self.sequence_id = sequence_id self._set_ids(force=True) i...	[ "def", "update_id", "(", "self", ",", "sequence_id", "=", "None", ")", ":", "if", "sequence_id", ":", "self", ".", "sequence_id", "=", "sequence_id", "self", ".", "_set_ids", "(", "force", "=", "True", ")", "if", "self", ".", "dataset", ":", "self", "....	32.545455	0.01087
def import_class(class_path): """imports and returns given class string. :param class_path: Class path as string :type class_path: str :returns: Class that has given path :rtype: class :Example: >>> import_class('collections.OrderedDict').__name__ 'OrderedDict' """ try: ...	[ "def", "import_class", "(", "class_path", ")", ":", "try", ":", "from", "django", ".", "utils", ".", "importlib", "import", "import_module", "module_name", "=", "'.'", ".", "join", "(", "class_path", ".", "split", "(", "\".\"", ")", "[", ":", "-", "1", ...	27.142857	0.001695
def get_pipeline_names(): """Returns the class paths of all Pipelines defined in alphabetical order.""" class_path_set = set() for cls in _PipelineMeta._all_classes: if cls.class_path is not None: class_path_set.add(cls.class_path) return sorted(class_path_set)	[ "def", "get_pipeline_names", "(", ")", ":", "class_path_set", "=", "set", "(", ")", "for", "cls", "in", "_PipelineMeta", ".", "_all_classes", ":", "if", "cls", ".", "class_path", "is", "not", "None", ":", "class_path_set", ".", "add", "(", "cls", ".", "c...	39.571429	0.021201
def _send_signal(self, unique_id, signalno, configs): """ Issues a signal for the specified process :Parameter unique_id: the name of the process """ pids = self.get_pid(unique_id, configs) if pids != constants.PROCESS_NOT_RUNNING_PID: pid_str = ' '.join(str(pid) for pid in pids) hostna...	[ "def", "_send_signal", "(", "self", ",", "unique_id", ",", "signalno", ",", "configs", ")", ":", "pids", "=", "self", ".", "get_pid", "(", "unique_id", ",", "configs", ")", "if", "pids", "!=", "constants", ".", "PROCESS_NOT_RUNNING_PID", ":", "pid_str", "=...	54.666667	0.016492
def copy_db(source_env, destination_env): """ Copies Db betweem servers, ie develop to qa. Should be called by function from function defined in project fabfile. Example usage: def copy_db_between_servers(source_server, destination_server): source_env = {} d...	[ "def", "copy_db", "(", "source_env", ",", "destination_env", ")", ":", "env", ".", "update", "(", "source_env", ")", "local_file_path", "=", "_get_db", "(", ")", "# put the file on external file system", "# clean external db", "# load database into external file system", ...	43.80597	0.002333
def extract_version(exepath, version_arg, word_index=-1, version_rank=3): """Run an executable and get the program version. Args: exepath: Filepath to executable. version_arg: Arg to pass to program, eg "-V". Can also be a list. word_index: Expect the Nth word of output to be the versio...	[ "def", "extract_version", "(", "exepath", ",", "version_arg", ",", "word_index", "=", "-", "1", ",", "version_rank", "=", "3", ")", ":", "if", "isinstance", "(", "version_arg", ",", "basestring", ")", ":", "version_arg", "=", "[", "version_arg", "]", "args...	35.457143	0.000784
def insert_route(**kw): """ `path` - '/', '/some/other/path/', '/test/<int:index>/' `node_id` `weight` - How this path is selected before other similar paths `method` - 'GET' is default. """ binding = { 'path': None, 'node_id': None, 'weight': None, ...	[ "def", "insert_route", "(", "", "", "kw", ")", ":", "binding", "=", "{", "'path'", ":", "None", ",", "'node_id'", ":", "None", ",", "'weight'", ":", "None", ",", "'method'", ":", "\"GET\"", "}", "binding", ".", "update", "(", "kw", ")", "with", "...	29.6875	0.002041
def digest(args): """ %prog digest fastafile NspI,BfuCI Digest fasta sequences to map restriction site positions. """ p = OptionParser(digest.__doc__) p.set_outfile() opts, args = p.parse_args(args) if len(args) != 2: sys.exit(not p.print_help()) fastafile, enzymes = args ...	[ "def", "digest", "(", "args", ")", ":", "p", "=", "OptionParser", "(", "digest", ".", "__doc__", ")", "p", ".", "set_outfile", "(", ")", "opts", ",", "args", "=", "p", ".", "parse_args", "(", "args", ")", "if", "len", "(", "args", ")", "!=", "2",...	30.285714	0.001143
def is_running(conn, args): """ Run a command to check the status of a mon, return a boolean. We heavily depend on the format of the output, if that ever changes we need to modify this. Check daemon status for 3 times output of the status should be similar to:: mon.mira094: running {"v...	[ "def", "is_running", "(", "conn", ",", "args", ")", ":", "stdout", ",", "stderr", ",", "_", "=", "remoto", ".", "process", ".", "check", "(", "conn", ",", "args", ")", "result_string", "=", "b' '", ".", "join", "(", "stdout", ")", "for", "run_check",...	28	0.001381
def map_add(self, key, mapkey, value, create=False, *kwargs): """ Set a value for a key in a map. .. warning:: The functionality of the various `map_`, `list_`, `queue_` and `set_*` functions are considered experimental and are included in the library to...	[ "def", "map_add", "(", "self", ",", "key", ",", "mapkey", ",", "value", ",", "create", "=", "False", ",", "", "", "kwargs", ")", ":", "op", "=", "SD", ".", "upsert", "(", "mapkey", ",", "value", ")", "sdres", "=", "self", ".", "mutate_in", "(",...	41	0.001402
def _process_filters(cls, filters): """Takes a list of filters and returns JSON :Parameters: - `filters`: List of Filters, (key, val) tuples, or dicts Returns: List of JSON API filters """ data = [] # Filters should always be a list for f in filters: ...	[ "def", "_process_filters", "(", "cls", ",", "filters", ")", ":", "data", "=", "[", "]", "# Filters should always be a list", "for", "f", "in", "filters", ":", "if", "isinstance", "(", "f", ",", "Filter", ")", ":", "if", "f", ".", "filters", ":", "data", ...	33.21875	0.001828
def poll(self, timeout=0.0): """Modified version of poll() from asyncore module""" if self.sock_map is None: Log.warning("Socket map is not registered to Gateway Looper") readable_lst = [] writable_lst = [] error_lst = [] if self.sock_map is not None: for fd, obj in self.sock_map.it...	[ "def", "poll", "(", "self", ",", "timeout", "=", "0.0", ")", ":", "if", "self", ".", "sock_map", "is", "None", ":", "Log", ".", "warning", "(", "\"Socket map is not registered to Gateway Looper\"", ")", "readable_lst", "=", "[", "]", "writable_lst", "=", "["...	28.779661	0.01139
def get_detection_results(url, timeout, metadata=False, save_har=False): """ Return results from detector. This function prepares the environment loading the plugins, getting the response and passing it to the detector. In case of errors, it raises exceptions to be handled externally. """ plu...	[ "def", "get_detection_results", "(", "url", ",", "timeout", ",", "metadata", "=", "False", ",", "save_har", "=", "False", ")", ":", "plugins", "=", "load_plugins", "(", ")", "if", "not", "plugins", ":", "raise", "NoPluginsError", "(", "'No plugins found'", "...	26.794118	0.002119
def Nu_cylinder_Whitaker(Re, Pr, mu=None, muw=None): r'''Calculates Nusselt number for crossflow across a single tube as shown in [1]_ at a specified `Re` and `Pr`, both evaluated at the free stream temperature. Recommends a viscosity exponent correction of 0.25, which is applied only if provided. Also ...	[ "def", "Nu_cylinder_Whitaker", "(", "Re", ",", "Pr", ",", "mu", "=", "None", ",", "muw", "=", "None", ")", ":", "Nu", "=", "(", "0.4", "", "Re", "", "0.5", "+", "0.06", "", "Re", "*", "(", "2", "/", "3.", ")", ")", "", "Pr", "**", "0....	36.211538	0.000517
def handle(self, cycle_delay=0.1): """ Call this method to spend about ``cycle_delay`` seconds processing requests in the pcaspy server. Under load, for example when running ``caget`` at a high frequency, the actual time spent in the method may be much shorter. This effect is not...	[ "def", "handle", "(", "self", ",", "cycle_delay", "=", "0.1", ")", ":", "if", "self", ".", "_server", "is", "not", "None", ":", "self", ".", "_server", ".", "process", "(", "cycle_delay", ")", "self", ".", "_driver", ".", "process_pv_updates", "(", ")"...	46.75	0.008741
def to_pypsa(network, mode, timesteps): """ Translate graph based grid representation to PyPSA Network For details from a user perspective see API documentation of :meth:`~.grid.network.EDisGo.analyze` of the API class :class:`~.grid.network.EDisGo`. Translating eDisGo's grid topology to PyPSA...	[ "def", "to_pypsa", "(", "network", ",", "mode", ",", "timesteps", ")", ":", "# check if timesteps is array-like, otherwise convert to list (necessary", "# to obtain a dataframe when using .loc in time series functions)", "if", "not", "hasattr", "(", "timesteps", ",", "\"__len__\"...	43.710983	0.000388
def ratioTerminatorToStar(H_p, R_p, R_s): # TODO add into planet class r"""Calculates the ratio of the terminator to the star assuming 5 scale heights large. If you dont know all of the input try :py:func:`calcRatioTerminatorToStar` .. math:: \Delta F = \frac{10 H R_p + 25 H^2}{R_\star^2} ...	[ "def", "ratioTerminatorToStar", "(", "H_p", ",", "R_p", ",", "R_s", ")", ":", "# TODO add into planet class", "deltaF", "=", "(", "(", "10", "", "H_p", "", "R_p", ")", "+", "(", "25", "", "H_p", "", "2", ")", ")", "/", "(", "R_s", "*", "2", ...	33.55	0.001449
def _analyzeDontMeasure(self, chunkSize, willMeasureLater, *sinks): """ Figure out the best diffs to use to reach all our required volumes. """ nodes = [None] height = 1 def sortKey(node): if node is None: return None return (node.intermediate, s...	[ "def", "_analyzeDontMeasure", "(", "self", ",", "chunkSize", ",", "willMeasureLater", ",", "*", "sinks", ")", ":", "nodes", "=", "[", "None", "]", "height", "=", "1", "def", "sortKey", "(", "node", ")", ":", "if", "node", "is", "None", ":", "return", ...	39.008621	0.002155
def get_hash(self): """ Get the HMAC-SHA1 that has been calculated this far. """ if not self.executed: raise pyhsm.exception.YHSM_Error("HMAC-SHA1 hash not available, before execute().") return self.result.hash_result	[ "def", "get_hash", "(", "self", ")", ":", "if", "not", "self", ".", "executed", ":", "raise", "pyhsm", ".", "exception", ".", "YHSM_Error", "(", "\"HMAC-SHA1 hash not available, before execute().\"", ")", "return", "self", ".", "result", ".", "hash_result" ]	37.571429	0.011152
def coerce(value): """ Takes a number (float, int) or a two-valued integer and returns the [low, high] in the standard interval form """ is_number = lambda x: isinstance(x, (int, float, complex)) #is x an instance of those things if isinstance(value, IntervalCell) or issu...	[ "def", "coerce", "(", "value", ")", ":", "is_number", "=", "lambda", "x", ":", "isinstance", "(", "x", ",", "(", "int", ",", "float", ",", "complex", ")", ")", "#is x an instance of those things", "if", "isinstance", "(", "value", ",", "IntervalCell", ")",...	44.592593	0.009756
def main(): """ Primary Tarbell command dispatch. """ command = Command.lookup(args.get(0)) if len(args) == 0 or args.contains(('-h', '--help', 'help')): display_info(args) sys.exit(1) elif args.contains(('-v', '--version')): display_version() sys.exit(1) e...	[ "def", "main", "(", ")", ":", "command", "=", "Command", ".", "lookup", "(", "args", ".", "get", "(", "0", ")", ")", "if", "len", "(", "args", ")", "==", "0", "or", "args", ".", "contains", "(", "(", "'-h'", ",", "'--help'", ",", "'help'", ")",...	23.88	0.00161
def savepysyn(self,wave,flux,fname,units=None): """ Cannot ever use the .writefits() method, because the array is frequently just sampled at the synphot waveset; plus, writefits is smart and does things like tapering.""" if units is None: ytype='throughput' units=...	[ "def", "savepysyn", "(", "self", ",", "wave", ",", "flux", ",", "fname", ",", "units", "=", "None", ")", ":", "if", "units", "is", "None", ":", "ytype", "=", "'throughput'", "units", "=", "' '", "else", ":", "ytype", "=", "'flux'", "col1", "=", "py...	47	0.027816
def mkdtemp(suffix="", prefix=template, dir=None): """User-callable function to create and return a unique temporary directory. The return value is the pathname of the directory. Arguments are as for mkstemp, except that the 'text' argument is not accepted. The directory is readable, writable, an...	[ "def", "mkdtemp", "(", "suffix", "=", "\"\"", ",", "prefix", "=", "template", ",", "dir", "=", "None", ")", ":", "if", "dir", "is", "None", ":", "dir", "=", "gettempdir", "(", ")", "names", "=", "_get_candidate_names", "(", ")", "for", "seq", "in", ...	29.965517	0.001115
def interpolate(self, factor, minGlyph, maxGlyph, round=True, suppressError=True): """ Interpolate the contents of this glyph at location ``factor`` in a linear interpolation between ``minGlyph`` and ``maxGlyph``. >>> glyph.interpolate(0.5, otherGlyph1, otherGlyp...	[ "def", "interpolate", "(", "self", ",", "factor", ",", "minGlyph", ",", "maxGlyph", ",", "round", "=", "True", ",", "suppressError", "=", "True", ")", ":", "factor", "=", "normalizers", ".", "normalizeInterpolationFactor", "(", "factor", ")", "if", "not", ...	52.214286	0.001343
def dfa_word_acceptance(dfa: dict, word: list) -> bool: """ Checks if a given word is accepted by a DFA, returning True/false. The word w is accepted by a DFA if DFA has an accepting run on w. Since A is deterministic, :math:`w ∈ L(A)` if and only if :math:`ρ(s_0 , w) ∈ F` . :param dict df...	[ "def", "dfa_word_acceptance", "(", "dfa", ":", "dict", ",", "word", ":", "list", ")", "->", "bool", ":", "current_state", "=", "dfa", "[", "'initial_state'", "]", "for", "action", "in", "word", ":", "if", "(", "current_state", ",", "action", ")", "in", ...	33.291667	0.001217
def inverse_lin_decay(max_step, min_value=0.01, step=None): """Inverse-decay linearly from 0.01 to 1.0 reached at max_step.""" if step is None: step = tf.train.get_global_step() if step is None: return 1.0 step = to_float(step) progress = tf.minimum(step / float(max_step), 1.0) return progress * (1....	[ "def", "inverse_lin_decay", "(", "max_step", ",", "min_value", "=", "0.01", ",", "step", "=", "None", ")", ":", "if", "step", "is", "None", ":", "step", "=", "tf", ".", "train", ".", "get_global_step", "(", ")", "if", "step", "is", "None", ":", "retu...	37.555556	0.020231

def drop_index(self, raw): """ Executes a drop index command. { "op" : "c", "ns" : "testdb.$cmd", "o" : { "dropIndexes" : "testcoll", "index" : "nuie_1" } } """ dbname = raw['ns'].split('.', 1)[0] collname = raw['o']['dropIndexes']...

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def formatted_completion_sig(completion): """Regenerate signature for methods. Return just the name otherwise""" f_result = completion["name"] if is_basic_type(completion): # It's a raw type return f_result elif len(completion["typeInfo"]["paramSections"]) == 0: return f_result ...

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def R_isrk(self, k): """ Function returns the inverse square root of R matrix on step k. """ ind = int(self.index[self.R_time_var_index, k]) R = self.R[:, :, ind] if (R.shape[0] == 1): # 1-D case handle simplier. No storage # of the result, just compute it e...

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def last_seen_utc(self) -> Optional[datetime]: """Timestamp when the story has last been watched or None (UTC).""" if self._node['seen']: return datetime.utcfromtimestamp(self._node['seen'])

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def compile_format(self, log_format: str) -> Tuple[str, List[KeyMethod]]: """Translate log_format into form usable by modulo formatting All known atoms will be replaced with %s Also methods for formatting of those atoms will be added to _methods in appropriate order For example...

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async def process_frame(self, frame): """Update nodes via frame, usually received by house monitor.""" if isinstance(frame, FrameNodeStatePositionChangedNotification): if frame.node_id not in self.pyvlx.nodes: return node = self.pyvlx.nodes[frame.node_id] ...

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def _create_results_summary(self): """ Create the dataframe that displays the estimation results, and store it on the model instance. Returns ------- None. """ # Make sure we have all attributes needed to create the results summary needed_attribut...

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def add_element(self, location, element, delete_elem=False): """ Create an entry located at ``location``. Args: location: String or :class:`LocationDescriptor` to describe a "separator location" (i.e. dir1/dir2/dir3 for instance). element: Element...

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def triangle_normal(a,b,c): ''' triangle_normal(a, b, c) yields the normal vector of the triangle whose vertices are given by the points a, b, and c. If the points are 2D points, then 3D normal vectors are still yielded, that are always (0,0,1) or (0,0,-1). This function auto-threads over matrices, ...

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def setOptions( self, options ): """ Sets the tag option list for this widget. If used, tags need to be found within the list of options when added. :param options | [<str>, ..] """ self._options = map(str, options) if ( options ):...

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def flatten(nested_iterable): """ Flattens arbitrarily nested lists/tuples. Code partially taken from https://stackoverflow.com/a/10824420. Parameters ---------- nested_iterable A list or tuple of arbitrarily nested values. Yields ------ any Non-list and non-tuple ...

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def _section_execution_order(self, section, iterargs , reverse=False , custom_order=None , explicit_checks: Iterable = None , exclude_checks: Iterable = None): """ order must: a) contain...

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def map(self): """Perform a function on every item in an iterable.""" with Pool(self.cpu_count) as pool: pool.map(self._func, self._iterable) pool.close() return True

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def write_Track(file, track, bpm=120, repeat=0, verbose=False): """Write a mingus.Track to a MIDI file. Write the name to the file and set the instrument if the instrument has the attribute instrument_nr, which represents the MIDI instrument number. The class MidiInstrument in mingus.containers.Instrum...

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def recursive_model_update(model, props): """ Recursively updates attributes on a model including other models. If the type of the new model matches the old model properties are simply updated, otherwise the model is replaced. """ updates = {} valid_properties = model.properties_with_values(...

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def move_identity(db, from_id, to_uuid): """Move an identity to a unique identity. This function shifts the identity identified by 'from_id' to the unique identity 'to_uuid'. When 'to_uuid' is the unique identity that is currently related to 'from_id', the action does not have any effect. In ...

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def angle_subtended(ell, **kwargs): """ Compute the half angle subtended (or min and max angles) for an offset elliptical conic from the origin or an arbitrary viewpoint. kwargs: tangent Return tangent instead of angle (default false) viewpoint Defaults to origin """ retu...

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def make_directory(path): """ Make a directory and any intermediate directories that don't already exist. This function handles the case where two threads try to create a directory at once. """ if not os.path.exists(path): # concurrent writes that try to create the same dir can fail ...

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def authorize(self): """ Use the magic of a unicorn and summon the set-top box to listen to us. / ,.. / ,' '; ,,.__ _,' /'; . :',' ~~~~ '. '~ :' ( ) )::, '. '. .=----=..-~ .;'...

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def get(self, key, value=None): "x.get(k[,d]) -> x[k] if k in x, else d. d defaults to None." _key = self._prepare_key(key) prefix, node = self._get_node_by_key(_key) if prefix==_key and node.value is not None: return self._unpickle_value(node.value) else: ...

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def set_bytes_at_offset(self, offset, data): """Overwrite the bytes at the given file offset with the given string. Return True if successful, False otherwise. It can fail if the offset is outside the file's boundaries. """ if not isinstance(data, bytes): raise Type...

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def histogram(self, stat, value, tags=None): """Report a histogram.""" self._log('histogram', stat, value, tags)

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def bin2hexline(data, add_addr=True, width=16): """ Format binary data to a Hex-Editor like format... >>> data = bytearray([i for i in range(256)]) >>> print('\\n'.join(bin2hexline(data, width=16))) 0000 00 01 02 03 04 05 06 07 08 09 0a 0b 0c 0d 0e 0f ................ 0016 10 11 12 13 14 15 16 ...

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def diff_sizes(a, b, progressbar=None): """Return list of tuples where sizes differ. Tuple structure: (identifier, size in a, size in b) Assumes list of identifiers in a and b are identical. :param a: first :class:`dtoolcore.DataSet` :param b: second :class:`dtoolcore.DataSet` :returns: l...

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def check_data_port_connection(self, check_data_port): """Checks the connection validity of a data port The method is called by a child state to check the validity of a data port in case it is connected with data flows. The data port does not belong to 'self', but to one of self.states. ...

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def on_value_change(self, picker, old, new): """ Set the checked property based on the checked state of all the children """ d = self.declaration with self.widget.setValue.suppressed(): d.value = new

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def expect(self, pattern, timeout=-1): """Waits on the given pattern to appear in std_out""" if self.blocking: raise RuntimeError("expect can only be used on non-blocking commands.") try: self.subprocess.expect(pattern=pattern, timeout=timeout) except pexpect.EO...

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def _constraint_lb_and_ub_to_gurobi_sense_rhs_and_range_value(lb, ub): """Helper function used by Constraint and Model""" if lb is None and ub is None: raise Exception("Free constraint ...") elif lb is None: sense = '<' rhs = float(ub) range_value = 0. elif ub is None: ...

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def put(self, item): """Adds the passed in item object to the queue and calls :func:`flush` if the size of the queue is larger than :func:`max_queue_length`. This method does nothing if the passed in item is None. Args: item (:class:`contracts.Envelope`) item the telemetry envelope ...

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def merge_dict_of_lists(adict, indices, pop_later=True, copy=True): """Extend the within a dict of lists. The indices will indicate which list have to be extended by which other list. Parameters ---------- adict: OrderedDict An ordered dictionary of lists indices: list or tuple of 2 it...

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def long_poll_notifications(self, **kwargs): # noqa: E501 """Get notifications using Long Poll # noqa: E501 In this case, notifications are delivered through HTTP long poll requests. The HTTP request is kept open until an event notification or a batch of event notifications are delivered to the clien...

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def print_dependencies(_run): """Print the detected source-files and dependencies.""" print('Dependencies:') for dep in _run.experiment_info['dependencies']: pack, _, version = dep.partition('==') print(' {:<20} == {}'.format(pack, version)) print('\nSources:') for source, digest i...

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def relax_AX(self): """The parent class method that this method overrides only implements the relaxation step for the variables of the baseline consensus algorithm. This method calls the overridden method and then implements the relaxation step for the additional variables requir...

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def csrf_token(): """ Get csrf token or create new one """ from uliweb import request, settings from uliweb.utils.common import safe_str v = {} token_name = settings.CSRF.cookie_token_name if not request.session.deleted and request.session.get(token_name): v = request.sessio...

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def _position_and_velocity_TEME_km(self, t): """Return the raw true equator mean equinox (TEME) vectors from SGP4. Returns a tuple of NumPy arrays ``([x y z], [xdot ydot zdot])`` expressed in kilometers and kilometers per second. Note that we assume the TLE epoch to be a UTC date, per ...

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def get_term(self,term_id): """ Returns the term object for the supplied identifier @type term_id: string @param term_id: term identifier """ if term_id in self.idx: return Cterm(self.idx[term_id],self.type) else: return None

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def wait(self, timeout_s: float = None) -> int: """ Wait for up to ``timeout_s`` for the child process to finish. Args: timeout_s: maximum time to wait or ``None`` to wait forever Returns: process return code; or ``0`` if it wasn't running, or ``1`` if ...

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def _decode_filename_to_unicode(f): '''Get bytestring filename and return unicode. First, try to decode from default file system encoding If that fails, use ``chardet`` module to guess encoding. As a last resort, try to decode as utf-8. If the argument already is unicode, return as is''' log.d...

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def find_by_id(self, repoid): """ Returns the repo with the specified <repoid> """ for row in self.jsondata: if repoid == row["repoid"]: return self._infofromdict(row)

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def collect(path, no_input): '''Collect static files''' if exists(path): msg = '"%s" directory already exists and will be erased' log.warning(msg, path) if not no_input: click.confirm('Are you sure?', abort=True) log.info('Deleting static directory "%s"', path) ...

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def alignment_correcter(self, alignment_file_list, output_file_name, filter_minimum=None): ''' Remove lower case insertions in alignment outputs from HMM align. Give a list of alignments, and an output file name, and each alignment will be corrected, and writt...

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def sequence_to_dt64ns(data, dtype=None, copy=False, tz=None, dayfirst=False, yearfirst=False, ambiguous='raise', int_as_wall_time=False): """ Parameters ---------- data : list-like dtype : dtype, str, or None, default None cop...

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def remove_too_short(utterances: List[Utterance], _winlen=25, winstep=10) -> List[Utterance]: """ Removes utterances that will probably have issues with CTC because of the number of frames being less than the number of tokens in the transcription. Assuming char tokenization to minimize ...

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def port_pair(self): """The port and it's transport as a pair""" if self.transport is NotSpecified: return (self.port, "tcp") else: return (self.port, self.transport)

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def find_sanitizer_from_module(module_name, function_name): """ Attempts to find sanitizer function from given module. If the module cannot be imported, or function with given name does not exist in it, nothing will be returned by this method. Otherwise the found sanitizer functi...

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def bar(h1: Histogram1D, **kwargs) -> dict: """Bar plot of 1D histogram. Parameters ---------- lw : float Width of the line between bars alpha : float Opacity of the bars hover_alpha: float Opacity of the bars when hover on """ # TODO: Enable collections # TO...

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def print_upper_triangular_matrix_as_complete(matrix): """Prints a CVRP data dict upper triangular matrix as a normal matrix Doesn't print headers. Arguments --------- matrix : dict Description """ for i in sorted(matrix.keys()): for j in sorted(matrix.keys...

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def reshape_like_all_dims(a, b): """Reshapes a to match the shape of b.""" ret = tf.reshape(a, tf.shape(b)) if not tf.executing_eagerly(): ret.set_shape(b.get_shape()) return ret

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def write_tree_newick(self, filename, hide_rooted_prefix=False): '''Write this ``Tree`` to a Newick file Args: ``filename`` (``str``): Path to desired output file (plain-text or gzipped) ''' if not isinstance(filename, str): raise TypeError("filename must be a st...

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def values(self, key_type=None): """ Returns a copy of the dictionary's values. @param key_type if specified, only values pointed by keys of this type will be returned. Otherwise list of all values contained in this dictionary will be returned.""" if(key_type is not None...

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def relop_code(self, relop, operands_type): """Returns code for relational operator relop - relational operator operands_type - int or unsigned """ code = self.RELATIONAL_DICT[relop] offset = 0 if operands_type == SharedData.TYPES.INT else len(SharedData.RELAT...

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def copyNodeList(self, node): """Do a recursive copy of the node list. """ if node is None: node__o = None else: node__o = node._o ret = libxml2mod.xmlDocCopyNodeList(self._o, node__o) if ret is None:raise treeError('xmlDocCopyNodeList() failed') __tmp = xmlNode(_obj=ret)...

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def make_parser(parser_creator=None, **kwargs): """Returns a base argument parser for the ray.tune tool. Args: parser_creator: A constructor for the parser class. kwargs: Non-positional args to be passed into the parser class constructor. """ if parser_creator: pars...

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def export_epoch_file(stimfunction, filename, tr_duration, temporal_resolution=100.0 ): """ Output an epoch file, necessary for some inputs into brainiak This takes in the time course of stimulus events and outputs the epoc...

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def _catalog_check(self, cat_name, append=False): """ Check to see if the name of the ingested catalog is valid Parameters ---------- cat_name: str The name of the catalog in the Catalog object append: bool Append the catalog rather than r...

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def delete_tags(tags, name=None, group_id=None, vpc_name=None, vpc_id=None, region=None, key=None, keyid=None, profile=None): ''' deletes tags from a security group .. versionadde...

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def _index_sub(self, uri_list, num, batch_num): """ Converts a list of uris to elasticsearch json objects args: uri_list: list of uris to convert num: the ending count within the batch batch_num: the batch number """ bname = '%s-%s' % (batch_n...

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def create_namespaced_ingress(self, namespace, body, **kwargs): # noqa: E501 """create_namespaced_ingress # noqa: E501 create an Ingress # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> ...

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def startDrag(self, dragData): """ Starts a new drag with the inputed data. :param dragData | <dict> """ # create the mime data mimeData = QMimeData() for key, value in dragData.items(): mimeData.setData('application/x-%s' % key,...

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def in_attack_range_of(self, unit: Unit, bonus_distance: Union[int, float] = 0) -> "Units": """ Filters units that are in attack range of the unit in parameter """ return self.filter(lambda x: unit.target_in_range(x, bonus_distance=bonus_distance))

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def get_model_from_path_string(root_model, path): """ Return a model class for a related model root_model is the class of the initial model path is like foo__bar where bar is related to foo """ for path_section in path.split('__'): if path_section: try: field, mod...

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def rjust_text(text, width=80, indent=0, subsequent=None): """Wrap text and adjust it to right border. Same as L{wrap_text} with the difference that the text is aligned against the right text border. Args: text (str): Text to wrap and align. width (int): Maximum number of chara...

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def get_exporter(obj, name): """ Get an exporter for the :param obj: object to export :type obj: :class:`Component <cqparts.Component>` :param name: registered name of exporter :type name: :class:`str` :return: an exporter instance of the given type :rtype: :class:`Exporter` :raises...

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def validate(node, source): """Call this function to validate an AST.""" # TODO: leaving strict checking off to support insert_grad_of lf = LanguageFence(source, strict=False) lf.visit(node) return node

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def cleanup_classes(rdf): """Remove unnecessary class definitions: definitions of SKOS classes or unused classes. If a class is also a skos:Concept or skos:Collection, remove the 'classness' of it but leave the Concept/Collection.""" for t in (OWL.Class, RDFS.Class): for cl in rdf.subjects...

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def find_type(self, txt): """ top level function used to simply return the ONE ACTUAL string used for data types """ searchString = txt.upper() match = 'Unknown' for i in self.lst_type: if searchString in i: match = i return ma...

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def all_subs(bounds): """given a list of tuples specifying the bounds of an array, all_subs() returns a list of all the tuples of subscripts for that array.""" idx_list = [] for i in range(len(bounds)): this_dim = bounds[i] lo,hi = this_dim[0],this_dim[1] # bounds for this dimension...

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def simEvalCond(simulator, *conds): """ Evaluate list of values as condition """ _cond = True _vld = True for v in conds: val = bool(v.val) fullVld = v.vldMask == 1 if fullVld: if not val: return False, True else: return Fal...

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def filter(self, datasource_type, datasource_id, column): """ Endpoint to retrieve values for specified column. :param datasource_type: Type of datasource e.g. table :param datasource_id: Datasource id :param column: Column name to retrieve values for :return: ""...

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def generate_and_run(simulation, simulator, network=None, return_results=False, base_dir=None, target_dir=None, num_processors=1): """ Generates the network in the specified simulato...

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def types_strict(instance): """Ensure that no custom object types are used, but only the official ones from the specification. """ if instance['type'] not in enums.TYPES: yield JSONError("Object type '%s' is not one of those defined in the" " specification." % instance['t...

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def render_to_message(self, extra_context=None, **kwargs): """ Renders and returns an unsent message with the provided context. Any extra keyword arguments passed will be passed through as keyword arguments to the message constructor. :param extra_context: Any additional contex...

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def logpdf_link(self, link_f, y, Y_metadata=None): """ :param link_f: latent variables (link(f)) :type link_f: Nx1 array :param y: data :type y: Nx1 array :param Y_metadata: includes censoring information in dictionary key 'censored' :returns: likelihood evaluated...

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def mysql(host, user, passwd, db, charset): """Set MySQL/MariaDB connection""" connection_string = database.set_mysql_connection(host=host, user=user, passwd=passwd, db=db, charset=charset) test_connection(connection_string)

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def update_id(self, sequence_id=None): """Alter the sequence id, and all of the names and ids derived from it. This often needs to be done after an IntegrityError in a multiprocessing run""" if sequence_id: self.sequence_id = sequence_id self._set_ids(force=True) i...

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def import_class(class_path): """imports and returns given class string. :param class_path: Class path as string :type class_path: str :returns: Class that has given path :rtype: class :Example: >>> import_class('collections.OrderedDict').__name__ 'OrderedDict' """ try: ...

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def get_pipeline_names(): """Returns the class paths of all Pipelines defined in alphabetical order.""" class_path_set = set() for cls in _PipelineMeta._all_classes: if cls.class_path is not None: class_path_set.add(cls.class_path) return sorted(class_path_set)

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def _send_signal(self, unique_id, signalno, configs): """ Issues a signal for the specified process :Parameter unique_id: the name of the process """ pids = self.get_pid(unique_id, configs) if pids != constants.PROCESS_NOT_RUNNING_PID: pid_str = ' '.join(str(pid) for pid in pids) hostna...

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def copy_db(source_env, destination_env): """ Copies Db betweem servers, ie develop to qa. Should be called by function from function defined in project fabfile. Example usage: def copy_db_between_servers(source_server, destination_server): source_env = {} d...

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def extract_version(exepath, version_arg, word_index=-1, version_rank=3): """Run an executable and get the program version. Args: exepath: Filepath to executable. version_arg: Arg to pass to program, eg "-V". Can also be a list. word_index: Expect the Nth word of output to be the versio...

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def insert_route(**kw): """ `path` - '/', '/some/other/path/', '/test/<int:index>/' `node_id` `weight` - How this path is selected before other similar paths `method` - 'GET' is default. """ binding = { 'path': None, 'node_id': None, 'weight': None, ...

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def digest(args): """ %prog digest fastafile NspI,BfuCI Digest fasta sequences to map restriction site positions. """ p = OptionParser(digest.__doc__) p.set_outfile() opts, args = p.parse_args(args) if len(args) != 2: sys.exit(not p.print_help()) fastafile, enzymes = args ...

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def is_running(conn, args): """ Run a command to check the status of a mon, return a boolean. We heavily depend on the format of the output, if that ever changes we need to modify this. Check daemon status for 3 times output of the status should be similar to:: mon.mira094: running {"v...

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def map_add(self, key, mapkey, value, create=False, **kwargs): """ Set a value for a key in a map. .. warning:: The functionality of the various `map_*`, `list_*`, `queue_*` and `set_*` functions are considered experimental and are included in the library to...

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def _process_filters(cls, filters): """Takes a list of filters and returns JSON :Parameters: - `filters`: List of Filters, (key, val) tuples, or dicts Returns: List of JSON API filters """ data = [] # Filters should always be a list for f in filters: ...

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def poll(self, timeout=0.0): """Modified version of poll() from asyncore module""" if self.sock_map is None: Log.warning("Socket map is not registered to Gateway Looper") readable_lst = [] writable_lst = [] error_lst = [] if self.sock_map is not None: for fd, obj in self.sock_map.it...

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def get_detection_results(url, timeout, metadata=False, save_har=False): """ Return results from detector. This function prepares the environment loading the plugins, getting the response and passing it to the detector. In case of errors, it raises exceptions to be handled externally. """ plu...

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def Nu_cylinder_Whitaker(Re, Pr, mu=None, muw=None): r'''Calculates Nusselt number for crossflow across a single tube as shown in [1]_ at a specified `Re` and `Pr`, both evaluated at the free stream temperature. Recommends a viscosity exponent correction of 0.25, which is applied only if provided. Also ...

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def handle(self, cycle_delay=0.1): """ Call this method to spend about ``cycle_delay`` seconds processing requests in the pcaspy server. Under load, for example when running ``caget`` at a high frequency, the actual time spent in the method may be much shorter. This effect is not...

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def to_pypsa(network, mode, timesteps): """ Translate graph based grid representation to PyPSA Network For details from a user perspective see API documentation of :meth:`~.grid.network.EDisGo.analyze` of the API class :class:`~.grid.network.EDisGo`. Translating eDisGo's grid topology to PyPSA...

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def ratioTerminatorToStar(H_p, R_p, R_s): # TODO add into planet class r"""Calculates the ratio of the terminator to the star assuming 5 scale heights large. If you dont know all of the input try :py:func:`calcRatioTerminatorToStar` .. math:: \Delta F = \frac{10 H R_p + 25 H^2}{R_\star^2} ...

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def _analyzeDontMeasure(self, chunkSize, willMeasureLater, *sinks): """ Figure out the best diffs to use to reach all our required volumes. """ nodes = [None] height = 1 def sortKey(node): if node is None: return None return (node.intermediate, s...

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def get_hash(self): """ Get the HMAC-SHA1 that has been calculated this far. """ if not self.executed: raise pyhsm.exception.YHSM_Error("HMAC-SHA1 hash not available, before execute().") return self.result.hash_result

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def coerce(value): """ Takes a number (float, int) or a two-valued integer and returns the [low, high] in the standard interval form """ is_number = lambda x: isinstance(x, (int, float, complex)) #is x an instance of those things if isinstance(value, IntervalCell) or issu...

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def main(): """ Primary Tarbell command dispatch. """ command = Command.lookup(args.get(0)) if len(args) == 0 or args.contains(('-h', '--help', 'help')): display_info(args) sys.exit(1) elif args.contains(('-v', '--version')): display_version() sys.exit(1) e...

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def savepysyn(self,wave,flux,fname,units=None): """ Cannot ever use the .writefits() method, because the array is frequently just sampled at the synphot waveset; plus, writefits is smart and does things like tapering.""" if units is None: ytype='throughput' units=...

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def mkdtemp(suffix="", prefix=template, dir=None): """User-callable function to create and return a unique temporary directory. The return value is the pathname of the directory. Arguments are as for mkstemp, except that the 'text' argument is not accepted. The directory is readable, writable, an...

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def interpolate(self, factor, minGlyph, maxGlyph, round=True, suppressError=True): """ Interpolate the contents of this glyph at location ``factor`` in a linear interpolation between ``minGlyph`` and ``maxGlyph``. >>> glyph.interpolate(0.5, otherGlyph1, otherGlyp...

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def dfa_word_acceptance(dfa: dict, word: list) -> bool: """ Checks if a given **word** is accepted by a DFA, returning True/false. The word w is accepted by a DFA if DFA has an accepting run on w. Since A is deterministic, :math:`w ∈ L(A)` if and only if :math:`ρ(s_0 , w) ∈ F` . :param dict df...

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def inverse_lin_decay(max_step, min_value=0.01, step=None): """Inverse-decay linearly from 0.01 to 1.0 reached at max_step.""" if step is None: step = tf.train.get_global_step() if step is None: return 1.0 step = to_float(step) progress = tf.minimum(step / float(max_step), 1.0) return progress * (1....

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