kejian/codesearchnet-python-rebalanced · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def write_r(df, f, sep=",", index_join="@", columns_join="."): """ Export dataframe in a format easily importable to R Index fields are joined with "@" and column fields by "." by default. :param df: :param f: :param index_join: :param columns_join: :return: """ df = df.copy() ...	[ "def", "write_r", "(", "df", ",", "f", ",", "sep", "=", "\",\"", ",", "index_join", "=", "\"@\"", ",", "columns_join", "=", "\".\"", ")", ":", "df", "=", "df", ".", "copy", "(", ")", "df", ".", "index", "=", "[", "\"@\"", ".", "join", "(", "[",...	29.75	0.002037
def extend_results_extrapoling_relations(helper): """Try to extract the bigger group of interlinked tokens. Should generally be used at last in the collectors chain. """ if not helper.bucket_dry: return # No need. tokens = set(helper.meaningful + helper.common) for relation in _extract...	[ "def", "extend_results_extrapoling_relations", "(", "helper", ")", ":", "if", "not", "helper", ".", "bucket_dry", ":", "return", "# No need.", "tokens", "=", "set", "(", "helper", ".", "meaningful", "+", "helper", ".", "common", ")", "for", "relation", "in", ...	36.357143	0.001916
async def get_object(source, *args): """Get object asynchronously. :param source: mode class or query to get object from :param args: lookup parameters :return: model instance or raises ``peewee.DoesNotExist`` if object not found """ warnings.warn("get_object() is deprecated, Manager.ge...	[ "async", "def", "get_object", "(", "source", ",", "*", "args", ")", ":", "warnings", ".", "warn", "(", "\"get_object() is deprecated, Manager.get() \"", "\"should be used instead\"", ",", "DeprecationWarning", ")", "if", "isinstance", "(", "source", ",", "peewee", "...	28.08	0.001377
def get_field_info(self, field, field_name): """ Given an instance of a serializer field, return a dictionary of metadata about it. """ field_info = OrderedDict() field_info['type'] = self.label_lookup[field] field_info['required'] = getattr(field, 'required', Fal...	[ "def", "get_field_info", "(", "self", ",", "field", ",", "field_name", ")", ":", "field_info", "=", "OrderedDict", "(", ")", "field_info", "[", "'type'", "]", "=", "self", ".", "label_lookup", "[", "field", "]", "field_info", "[", "'required'", "]", "=", ...	39.444444	0.001649
def EAS2TAS(ARSP,GPS,BARO,ground_temp=25): '''EAS2TAS from ARSP.Temp''' tempK = ground_temp + 273.15 - 0.0065 * GPS.Alt return sqrt(1.225 / (BARO.Press / (287.26 * tempK)))	[ "def", "EAS2TAS", "(", "ARSP", ",", "GPS", ",", "BARO", ",", "ground_temp", "=", "25", ")", ":", "tempK", "=", "ground_temp", "+", "273.15", "-", "0.0065", "*", "GPS", ".", "Alt", "return", "sqrt", "(", "1.225", "/", "(", "BARO", ".", "Press", "/",...	45.25	0.021739
def is_balance_proof_usable_onchain( received_balance_proof: BalanceProofSignedState, channel_state: NettingChannelState, sender_state: NettingChannelEndState, ) -> SuccessOrError: """ Checks the balance proof can be used on-chain. For a balance proof to be valid it must be newer than t...	[ "def", "is_balance_proof_usable_onchain", "(", "received_balance_proof", ":", "BalanceProofSignedState", ",", "channel_state", ":", "NettingChannelState", ",", "sender_state", ":", "NettingChannelEndState", ",", ")", "->", "SuccessOrError", ":", "expected_nonce", "=", "get_...	39.115789	0.00105
def _initEphemerals(self): """ Initialize all ephemeral members after being restored to a pickled state. """ ## We store the lists of segments updates, per cell, so that they can be # applied later during learning, when the cell gets bottom-up activation. # We store one list per cell. The lists ...	[ "def", "_initEphemerals", "(", "self", ")", ":", "## We store the lists of segments updates, per cell, so that they can be", "# applied later during learning, when the cell gets bottom-up activation.", "# We store one list per cell. The lists are identified with a hash key which", "# is a tuple (c...	46	0.001082
def get_single_lab(lab_slug): """Gets data from a single lab from makeinitaly.foundation.""" wiki = MediaWiki(makeinitaly__foundation_api_url) wiki_response = wiki.call( {'action': 'query', 'titles': lab_slug, 'prop': 'revisions', 'rvprop': 'content'}) # If we don't k...	[ "def", "get_single_lab", "(", "lab_slug", ")", ":", "wiki", "=", "MediaWiki", "(", "makeinitaly__foundation_api_url", ")", "wiki_response", "=", "wiki", ".", "call", "(", "{", "'action'", ":", "'query'", ",", "'titles'", ":", "lab_slug", ",", "'prop'", ":", ...	35.581081	0.00037
def json_request_response(f): """ Parse the JSON from an API response. We do this in a decorator so that our Twisted library can reuse the underlying functions """ @wraps(f) def wrapper(args, kwargs): response = f(args, **kwargs) response.raise_for_status() return jso...	[ "def", "json_request_response", "(", "f", ")", ":", "@", "wraps", "(", "f", ")", "def", "wrapper", "(", "", "args", ",", "", "", "kwargs", ")", ":", "response", "=", "f", "(", "", "args", ",", "", "", "kwargs", ")", "response", ".", "raise_...	31	0.00241
def fetchall(self): """ returns the remainder of records from the query. This is guaranteed by locking, so that no other thread can grab a few records while the set is fetched. This has the side effect that other threads may have to wait for an arbitrary long time until this query is done before the...	[ "def", "fetchall", "(", "self", ")", ":", "self", ".", "_cursorLock", ".", "acquire", "(", ")", "recs", "=", "[", "]", "while", "True", ":", "rec", "=", "self", ".", "fetchone", "(", ")", "if", "rec", "is", "None", ":", "break", "recs", ".", "app...	32.888889	0.026273
def autorun_filters(filters, doc, search_dirs, verbose): """ :param filters: list of str :param doc: panflute.Doc :param search_dirs: list of str :param verbose: bool :return: panflute.Doc """ def remove_py(s): return s[:-3] if s.endswith('.py') else s filter_paths = [] ...	[ "def", "autorun_filters", "(", "filters", ",", "doc", ",", "search_dirs", ",", "verbose", ")", ":", "def", "remove_py", "(", "s", ")", ":", "return", "s", "[", ":", "-", "3", "]", "if", "s", ".", "endswith", "(", "'.py'", ")", "else", "s", "filter_...	39	0.002001
def flat_map(coro, iterable, limit=0, loop=None, timeout=None, return_exceptions=False, initializer=None, args, *kw): """ Concurrently iterates values yielded from an iterable, passing them to an asynchronous coroutine. This function is the flatten version of to ``paco.map()``. Mapp...	[ "def", "flat_map", "(", "coro", ",", "iterable", ",", "limit", "=", "0", ",", "loop", "=", "None", ",", "timeout", "=", "None", ",", "return_exceptions", "=", "False", ",", "initializer", "=", "None", ",", "", "args", ",", "", "*", "kw", ")", ":"...	34.586667	0.000375
def proposal_metrics(iou): """ Add summaries for RPN proposals. Args: iou: nxm, #proposal x #gt """ # find best roi for each gt, for summary only best_iou = tf.reduce_max(iou, axis=0) mean_best_iou = tf.reduce_mean(best_iou, name='best_iou_per_gt') summaries = [mean_best_iou] ...	[ "def", "proposal_metrics", "(", "iou", ")", ":", "# find best roi for each gt, for summary only", "best_iou", "=", "tf", ".", "reduce_max", "(", "iou", ",", "axis", "=", "0", ")", "mean_best_iou", "=", "tf", ".", "reduce_mean", "(", "best_iou", ",", "name", "=...	32.421053	0.001577
def _load_instance(self, instance_id, force_reload=True): """ Return instance with the given id. For performance reasons, the instance ID is first searched for in the collection of VM instances started by ElastiCluster (`self._instances`), then in the list of all instances known...	[ "def", "_load_instance", "(", "self", ",", "instance_id", ",", "force_reload", "=", "True", ")", ":", "if", "force_reload", ":", "try", ":", "# Remove from cache and get from server again", "vm", "=", "self", ".", "nova_client", ".", "servers", ".", "get", "(", ...	42.607843	0.0009
def get_mean_and_stddevs(self, sites, rup, dists, imt, stddev_types): """ See :meth:`superclass method <.base.GroundShakingIntensityModel.get_mean_and_stddevs>` for spec of input and result values. """ # Extracting dictionary of coefficients specific to required ...	[ "def", "get_mean_and_stddevs", "(", "self", ",", "sites", ",", "rup", ",", "dists", ",", "imt", ",", "stddev_types", ")", ":", "# Extracting dictionary of coefficients specific to required", "# intensity measure type.", "C", "=", "self", ".", "COEFFS", "[", "imt", "...	34.043478	0.002484
def to_trajectory(self, show_ports=False, chains=None, residues=None, box=None): """Convert to an md.Trajectory and flatten the compound. Parameters ---------- show_ports : bool, optional, default=False Include all port atoms when converting to trajecto...	[ "def", "to_trajectory", "(", "self", ",", "show_ports", "=", "False", ",", "chains", "=", "None", ",", "residues", "=", "None", ",", "box", "=", "None", ")", ":", "atom_list", "=", "[", "particle", "for", "particle", "in", "self", ".", "particles", "("...	37.207547	0.001482
def put(self, items, indexes=True): '''Adds feature collections to the store. This efficiently adds multiple FCs to the store. The iterable of ``items`` given should yield tuples of ``(content_id, FC)``. :param items: Iterable of ``(content_id, FC)``. :param [str] feature_names...	[ "def", "put", "(", "self", ",", "items", ",", "indexes", "=", "True", ")", ":", "actions", "=", "[", "]", "for", "cid", ",", "fc", "in", "items", ":", "# TODO: If we store features in a columnar order, then we", "# could tell ES to index the feature values directly. -...	43.425	0.001126
def read(scope, filename): """ Reads the given file and returns the result. The result is also stored in the built-in __response__ variable. :type filename: string :param filename: A filename. :rtype: string :return: The content of the file. """ with open(filename[0], 'r') as fp: ...	[ "def", "read", "(", "scope", ",", "filename", ")", ":", "with", "open", "(", "filename", "[", "0", "]", ",", "'r'", ")", "as", "fp", ":", "lines", "=", "fp", ".", "readlines", "(", ")", "scope", ".", "define", "(", "__response__", "=", "lines", "...	27.928571	0.002475
def proto_0201(theABF): """protocol: membrane test.""" abf=ABF(theABF) abf.log.info("analyzing as a membrane test") plot=ABFplot(abf) plot.figure_height,plot.figure_width=SQUARESIZE/2,SQUARESIZE/2 plot.figure_sweeps() # save it plt.tight_layout() frameAndSave(abf,"membrane test") ...	[ "def", "proto_0201", "(", "theABF", ")", ":", "abf", "=", "ABF", "(", "theABF", ")", "abf", ".", "log", ".", "info", "(", "\"analyzing as a membrane test\"", ")", "plot", "=", "ABFplot", "(", "abf", ")", "plot", ".", "figure_height", ",", "plot", ".", ...	27.25	0.02071
def evaluate(self, verbose=True, passes=None): """Summary Returns: TYPE: Description """ i = 0 exprs = [] for column_name in self.column_names: if len(self.column_names) > 1: index = "1.$%d" % i else: in...	[ "def", "evaluate", "(", "self", ",", "verbose", "=", "True", ",", "passes", "=", "None", ")", ":", "i", "=", "0", "exprs", "=", "[", "]", "for", "column_name", "in", "self", ".", "column_names", ":", "if", "len", "(", "self", ".", "column_names", "...	29.465116	0.001528
def write_sub_file(self): """ Write a submit file for this Condor job. """ if not self.__log_file: raise CondorSubmitError, "Log file not specified." if not self.__err_file: raise CondorSubmitError, "Error file not specified." if not self.__out_file: raise CondorSubmitError, "O...	[ "def", "write_sub_file", "(", "self", ")", ":", "if", "not", "self", ".", "__log_file", ":", "raise", "CondorSubmitError", ",", "\"Log file not specified.\"", "if", "not", "self", ".", "__err_file", ":", "raise", "CondorSubmitError", ",", "\"Error file not specified...	38.584416	0.026584
def plot(self, fig=None, draw=True): """ Plot the filter Parameters ---------- fig: bokeh.plotting.figure (optional) A figure to plot on draw: bool Draw the figure, else return it Returns ------- bokeh.plotting.figure ...	[ "def", "plot", "(", "self", ",", "fig", "=", "None", ",", "draw", "=", "True", ")", ":", "COLORS", "=", "color_gen", "(", "'Category10'", ")", "# Make the figure", "if", "fig", "is", "None", ":", "xlab", "=", "'Wavelength [{}]'", ".", "format", "(", "s...	27.236842	0.001866
def step(self, **args): """ Network.step() Does a single step. Calls propagate(), backprop(), and change_weights() if learning is set. Format for parameters: <layer name> = <activation/target list> """ if self.verbosity > 0: print("Network.ste...	[ "def", "step", "(", "self", ",", "", "", "args", ")", ":", "if", "self", ".", "verbosity", ">", "0", ":", "print", "(", "\"Network.step() called with:\"", ",", "args", ")", "# First, copy the values into either activations or targets:", "retargs", "=", "self", ...	45.382979	0.010096
def open_file_cont(self, pathspec, loader_cont_fn): """Open a file and do some action on it. Parameters ---------- pathspec : str The path of the file to load (can be a URI, but must reference a local file). loader_cont_fn : func (data_obj) -> None ...	[ "def", "open_file_cont", "(", "self", ",", "pathspec", ",", "loader_cont_fn", ")", ":", "info", "=", "iohelper", ".", "get_fileinfo", "(", "pathspec", ")", "filepath", "=", "info", ".", "filepath", "if", "not", "os", ".", "path", ".", "exists", "(", "fil...	35.967742	0.000873
def register_actions(self, shortcut_manager): """Register callback methods fot triggered actions. :param rafcon.gui.shortcut_manager.ShortcutManager shortcut_manager: Shortcut Manager Object holding mappings between shortcuts and actions. """ shortcut_manager.add_callback_fo...	[ "def", "register_actions", "(", "self", ",", "shortcut_manager", ")", ":", "shortcut_manager", ".", "add_callback_for_action", "(", "'close'", ",", "self", ".", "on_close_shortcut", ")", "# Call register_action of parent in order to register actions for child controllers", "sup...	53.1	0.011111
def terminate_processes(pid_list): """Terminate a list of processes by sending to each of them a SIGTERM signal, pre-emptively checking if its PID might have been reused. Parameters ---------- pid_list : list A list of process identifiers identifying active processes. """ ...	[ "def", "terminate_processes", "(", "pid_list", ")", ":", "for", "proc", "in", "psutil", ".", "process_iter", "(", ")", ":", "if", "proc", ".", "pid", "in", "pid_list", ":", "proc", ".", "terminate", "(", ")" ]	31.076923	0.009615
def new_conn(self): """ Create a new ConnectionWrapper instance :return: """ """ :return: """ logger.debug("Opening new connection to rethinkdb with args=%s" % self._conn_args) return ConnectionWrapper(self._pool, **self._conn_args)	[ "def", "new_conn", "(", "self", ")", ":", "\"\"\"\n :return:\n \"\"\"", "logger", ".", "debug", "(", "\"Opening new connection to rethinkdb with args=%s\"", "%", "self", ".", "_conn_args", ")", "return", "ConnectionWrapper", "(", "self", ".", "_pool", ",",...	29.5	0.009868
def rotated_Gamma_ml(m,l,phi1,phi2,theta1,theta2,gamma_ml): """ This function takes any gamma in the computational frame and rotates it to the cosmic frame. """ rotated_gamma = 0 for ii in range(2l+1): rotated_gamma += Dlmk(l,m,ii-l,phi1,phi2,theta1,theta2).conjugate()g...	[ "def", "rotated_Gamma_ml", "(", "m", ",", "l", ",", "phi1", ",", "phi2", ",", "theta1", ",", "theta2", ",", "gamma_ml", ")", ":", "rotated_gamma", "=", "0", "for", "ii", "in", "range", "(", "2", "*", "l", "+", "1", ")", ":", "rotated_gamma", "+=", ...	26.538462	0.056022
def parse_args(): '''Parse command line arguments''' parser = argparse.ArgumentParser( description='Morphology fit distribution extractor', epilog='Note: Outputs json of the optimal distribution \ and corresponding parameters.') parser.add_argument('datapaths', ...	[ "def", "parse_args", "(", ")", ":", "parser", "=", "argparse", ".", "ArgumentParser", "(", "description", "=", "'Morphology fit distribution extractor'", ",", "epilog", "=", "'Note: Outputs json of the optimal distribution \\\n and corresponding parameters.'", ")",...	37.666667	0.001727
def filter(self, func): """Returns a packet list filtered by a truth function""" return self.__class__(list(filter(func,self.res)), name="filtered %s"%self.listname)	[ "def", "filter", "(", "self", ",", "func", ")", ":", "return", "self", ".", "__class__", "(", "list", "(", "filter", "(", "func", ",", "self", ".", "res", ")", ")", ",", "name", "=", "\"filtered %s\"", "%", "self", ".", "listname", ")" ]	52	0.018957
def load(cls, stream): """Load a serialized version of self from text stream. Expects the format used by mongooplog. """ data = json.load(stream)['ts'] return cls(data['time'], data['inc'])	[ "def", "load", "(", "cls", ",", "stream", ")", ":", "data", "=", "json", ".", "load", "(", "stream", ")", "[", "'ts'", "]", "return", "cls", "(", "data", "[", "'time'", "]", ",", "data", "[", "'inc'", "]", ")" ]	32	0.008696
def getServerStates(pbclient=None, dc_id=None, serverid=None, servername=None): ''' gets states of a server''' if pbclient is None: raise ValueError("argument 'pbclient' must not be None") if dc_id is None: raise ValueError("argument 'dc_id' must not be None") server = None if server...	[ "def", "getServerStates", "(", "pbclient", "=", "None", ",", "dc_id", "=", "None", ",", "serverid", "=", "None", ",", "servername", "=", "None", ")", ":", "if", "pbclient", "is", "None", ":", "raise", "ValueError", "(", "\"argument 'pbclient' must not be None\...	44.473684	0.001158
def authentication(self, event): """Links the client to the granted account and profile, then notifies the client""" try: self.log("Authorization has been granted by DB check:", event.username, lvl=debug) account, profile, clientconfig = event.userd...	[ "def", "authentication", "(", "self", ",", "event", ")", ":", "try", ":", "self", ".", "log", "(", "\"Authorization has been granted by DB check:\"", ",", "event", ".", "username", ",", "lvl", "=", "debug", ")", "account", ",", "profile", ",", "clientconfig", ...	39.454545	0.000749
def run_query(self, collection_name, query): """ method runs query on a specified collection and return a list of filtered Job records """ cursor = self.ds.filter(collection_name, query) return [Job.from_json(document) for document in cursor]	[ "def", "run_query", "(", "self", ",", "collection_name", ",", "query", ")", ":", "cursor", "=", "self", ".", "ds", ".", "filter", "(", "collection_name", ",", "query", ")", "return", "[", "Job", ".", "from_json", "(", "document", ")", "for", "document", ...	65.75	0.011278
def msvc_batch_key(action, env, target, source): """ Returns a key to identify unique batches of sources for compilation. If batching is enabled (via the $MSVC_BATCH setting), then all target+source pairs that use the same action, defined by the same environment, and have the same target and source...	[ "def", "msvc_batch_key", "(", "action", ",", "env", ",", "target", ",", "source", ")", ":", "# Fixing MSVC_BATCH mode. Previous if did not work when MSVC_BATCH", "# was set to False. This new version should work better.", "# Note we need to do the env.subst so $MSVC_BATCH can be a refere...	42.25	0.002479
def spectrogram(samples, fft_length=256, sample_rate=2, hop_length=128): """ Compute the spectrogram for a real signal. The parameters follow the naming convention of matplotlib.mlab.specgram Args: samples (1D array): input audio signal fft_length (int): number of elements in fft win...	[ "def", "spectrogram", "(", "samples", ",", "fft_length", "=", "256", ",", "sample_rate", "=", "2", ",", "hop_length", "=", "128", ")", ":", "assert", "not", "np", ".", "iscomplexobj", "(", "samples", ")", ",", "\"Must not pass in complex numbers\"", "window", ...	38.557692	0.000973
def index(objects, attr): """ Generate a mapping of a list of objects indexed by the given attr. Parameters ---------- objects : :class:`list`, iterable attr : string The attribute to index the list of objects by Returns ------- dictionary : dict keys are the value ...	[ "def", "index", "(", "objects", ",", "attr", ")", ":", "with", "warnings", ".", "catch_warnings", "(", ")", ":", "warnings", ".", "simplefilter", "(", "\"ignore\"", ")", "return", "{", "getattr", "(", "obj", ",", "attr", ")", ":", "obj", "for", "obj", ...	24.6	0.000978
def remove_index(self): """Remove Elasticsearch index associated to the campaign""" self.index_client.close(self.index_name) self.index_client.delete(self.index_name)	[ "def", "remove_index", "(", "self", ")", ":", "self", ".", "index_client", ".", "close", "(", "self", ".", "index_name", ")", "self", ".", "index_client", ".", "delete", "(", "self", ".", "index_name", ")" ]	46.75	0.010526
def make_primitive(cas_coords, window_length=3): """Calculates running average of cas_coords with a fixed averaging window_length. Parameters ---------- cas_coords : list(numpy.array or float or tuple) Each element of the list must have length 3. window_length : int, optional The nu...	[ "def", "make_primitive", "(", "cas_coords", ",", "window_length", "=", "3", ")", ":", "if", "len", "(", "cas_coords", ")", ">=", "window_length", ":", "primitive", "=", "[", "]", "count", "=", "0", "for", "_", "in", "cas_coords", "[", ":", "-", "(", ...	34.513514	0.002285
def _iter_channels(framefile): """Yields the name and type of each channel in a GWF file TOC Requires: \|LDAStools.frameCPP\|_ Parameters ---------- framefile : `str`, `LDAStools.frameCPP.IFrameFStream` path of GWF file, or open file stream, to read """ from LDAStools import fram...	[ "def", "_iter_channels", "(", "framefile", ")", ":", "from", "LDAStools", "import", "frameCPP", "if", "not", "isinstance", "(", "framefile", ",", "frameCPP", ".", "IFrameFStream", ")", ":", "framefile", "=", "open_gwf", "(", "framefile", ",", "'r'", ")", "to...	33.833333	0.001597
def sizeClassifier(path, min_size=DEFAULTS['min_size']): """Sort a file into a group based on on-disk size. :param paths: See :func:`fastdupes.groupify` :param min_size: Files smaller than this size (in bytes) will be ignored. :type min_size: :class:`__builtins__.int` :returns: See :func:`fastdup...	[ "def", "sizeClassifier", "(", "path", ",", "min_size", "=", "DEFAULTS", "[", "'min_size'", "]", ")", ":", "filestat", "=", "_stat", "(", "path", ")", "if", "stat", ".", "S_ISLNK", "(", "filestat", ".", "st_mode", ")", ":", "return", "# Skip symlinks.", "...	32.681818	0.001351
def state(self): """ Describe the state of a Job. Returns: A string describing the job's state. """ state = 'in progress' if self.is_complete: if self.failed: state = 'failed with error: %s' % str(self._fatal_error) elif self._errors: state = 'completed with some non-fat...	[ "def", "state", "(", "self", ")", ":", "state", "=", "'in progress'", "if", "self", ".", "is_complete", ":", "if", "self", ".", "failed", ":", "state", "=", "'failed with error: %s'", "%", "str", "(", "self", ".", "_fatal_error", ")", "elif", "self", "."...	26.714286	0.010336
def begin(self, total: int, name=None, message=None): """Call before starting work on a monitor, specifying name and amount of work""" self.total = total message = message or name or "Working..." self.name = name or "ProgressMonitor" self.update(0, message)	[ "def", "begin", "(", "self", ",", "total", ":", "int", ",", "name", "=", "None", ",", "message", "=", "None", ")", ":", "self", ".", "total", "=", "total", "message", "=", "message", "or", "name", "or", "\"Working...\"", "self", ".", "name", "=", "...	48.666667	0.010101
def element(self): """Pymatgen :class:`Element`.""" try: return Element.from_Z(self.Z) except (KeyError, IndexError): return Element.from_Z(int(self.Z))	[ "def", "element", "(", "self", ")", ":", "try", ":", "return", "Element", ".", "from_Z", "(", "self", ".", "Z", ")", "except", "(", "KeyError", ",", "IndexError", ")", ":", "return", "Element", ".", "from_Z", "(", "int", "(", "self", ".", "Z", ")",...	32.5	0.01
def save( self ): """ Saves the values from the editor to the system. """ schema = self.schema() if ( not schema ): self.saved.emit() return record = self.record() if not record: record = self._model() ...	[ "def", "save", "(", "self", ")", ":", "schema", "=", "self", ".", "schema", "(", ")", "if", "(", "not", "schema", ")", ":", "self", ".", "saved", ".", "emit", "(", ")", "return", "record", "=", "self", ".", "record", "(", ")", "if", "not", "rec...	36	0.018753
def clean_text_by_word(text, language="english", deacc=False, additional_stopwords=None): """ Tokenizes a given text into words, applying filters and lemmatizing them. Returns a dict of word -> syntacticUnit. """ init_textcleanner(language, additional_stopwords) text_without_acronyms = replace_with_sepa...	[ "def", "clean_text_by_word", "(", "text", ",", "language", "=", "\"english\"", ",", "deacc", "=", "False", ",", "additional_stopwords", "=", "None", ")", ":", "init_textcleanner", "(", "language", ",", "additional_stopwords", ")", "text_without_acronyms", "=", "re...	57.692308	0.011811
def receive_id_from_server(self): """ Listen for an id from the server. At the beginning of a game, each client receives an IdFactory from the server. This factory are used to give id numbers that are guaranteed to be unique to tokens that created locally. This method checks...	[ "def", "receive_id_from_server", "(", "self", ")", ":", "for", "message", "in", "self", ".", "pipe", ".", "receive", "(", ")", ":", "if", "isinstance", "(", "message", ",", "IdFactory", ")", ":", "self", ".", "actor_id_factory", "=", "message", "return", ...	45.941176	0.011292
def do_POST(self): """Handles the HTTP POST request. Attempts to interpret all HTTP POST requests as XML-RPC calls, which are forwarded to the server's _dispatch method for handling. """ # Check that the path is legal if not self.is_rpc_path_valid(): self.re...	[ "def", "do_POST", "(", "self", ")", ":", "# Check that the path is legal", "if", "not", "self", ".", "is_rpc_path_valid", "(", ")", ":", "self", ".", "report_404", "(", ")", "return", "try", ":", "# Get arguments by reading body of request.", "# We read this in chunks...	42.071429	0.001659
def parse(self): """Generate a argparse parser and parse the command-line arguments""" if self.parser is None: self.makeParser() self.args = self.parser.parse_args() self.verbose = self.args.verbose	[ "def", "parse", "(", "self", ")", ":", "if", "self", ".", "parser", "is", "None", ":", "self", ".", "makeParser", "(", ")", "self", ".", "args", "=", "self", ".", "parser", ".", "parse_args", "(", ")", "self", ".", "verbose", "=", "self", ".", "a...	39.5	0.008264
def get_alias(cls): """Returns messenger alias. :return: str :rtype: str """ if cls.alias is None: cls.alias = cls.__name__ return cls.alias	[ "def", "get_alias", "(", "cls", ")", ":", "if", "cls", ".", "alias", "is", "None", ":", "cls", ".", "alias", "=", "cls", ".", "__name__", "return", "cls", ".", "alias" ]	21.444444	0.00995
def _google_v2_parse_arguments(args): """Validated google-v2 arguments.""" if (args.zones and args.regions) or (not args.zones and not args.regions): raise ValueError('Exactly one of --regions and --zones must be specified') if args.machine_type and (args.min_cores or args.min_ram): raise ValueError( ...	[ "def", "_google_v2_parse_arguments", "(", "args", ")", ":", "if", "(", "args", ".", "zones", "and", "args", ".", "regions", ")", "or", "(", "not", "args", ".", "zones", "and", "not", "args", ".", "regions", ")", ":", "raise", "ValueError", "(", "'Exact...	48.625	0.010101
def handler(self): """gets the security handler for the class""" if hasNTLM: if self._handler is None: passman = request.HTTPPasswordMgrWithDefaultRealm() passman.add_password(None, self._parsed_org_url, self._login_username, self._password) se...	[ "def", "handler", "(", "self", ")", ":", "if", "hasNTLM", ":", "if", "self", ".", "_handler", "is", "None", ":", "passman", "=", "request", ".", "HTTPPasswordMgrWithDefaultRealm", "(", ")", "passman", ".", "add_password", "(", "None", ",", "self", ".", "...	48	0.00818
def _parse_programs(self, string, parent, filepath=None): """Extracts a PROGRAM from the specified fortran code file.""" #First, get hold of the docstrings for all the modules so that we can #attach them as we parse them. moddocs = self.docparser.parse_docs(string) #Now look for...	[ "def", "_parse_programs", "(", "self", ",", "string", ",", "parent", ",", "filepath", "=", "None", ")", ":", "#First, get hold of the docstrings for all the modules so that we can", "#attach them as we parse them.", "moddocs", "=", "self", ".", "docparser", ".", "parse_d...	59.210526	0.010499
def _extract_device_name_from_event(event): """Extract device name from a tf.Event proto carrying tensor value.""" plugin_data_content = json.loads( tf.compat.as_str(event.summary.value[0].metadata.plugin_data.content)) return plugin_data_content['device']	[ "def", "_extract_device_name_from_event", "(", "event", ")", ":", "plugin_data_content", "=", "json", ".", "loads", "(", "tf", ".", "compat", ".", "as_str", "(", "event", ".", "summary", ".", "value", "[", "0", "]", ".", "metadata", ".", "plugin_data", "."...	52.8	0.014925
def _write(self, _new=False): """Writes the values of the attributes to the datastore. This method also creates the indices and saves the lists associated to the object. """ pipeline = self.db.pipeline() self._create_membership(pipeline) self._update_indices(pipe...	[ "def", "_write", "(", "self", ",", "_new", "=", "False", ")", ":", "pipeline", "=", "self", ".", "db", ".", "pipeline", "(", ")", "self", ".", "_create_membership", "(", "pipeline", ")", "self", ".", "_update_indices", "(", "pipeline", ")", "h", "=", ...	36.156863	0.001584
async def install_update(filename, loop): """ Install the update into the system environment. """ log.info("Installing update server into system environment") log.debug('File {} exists? {}'.format(filename, os.path.exists(filename))) out, err, returncode = await _install(sys.executable, filename...	[ "async", "def", "install_update", "(", "filename", ",", "loop", ")", ":", "log", ".", "info", "(", "\"Installing update server into system environment\"", ")", "log", ".", "debug", "(", "'File {} exists? {}'", ".", "format", "(", "filename", ",", "os", ".", "pat...	35.461538	0.002114
def hascurrent(self, allowempty=False): """Does the correction record the current authoritative annotation (needed only in a structural context when suggestions are proposed)""" for e in self.select(Current,None,False, False): if not allowempty and len(e) == 0: continue return Tr...	[ "def", "hascurrent", "(", "self", ",", "allowempty", "=", "False", ")", ":", "for", "e", "in", "self", ".", "select", "(", "Current", ",", "None", ",", "False", ",", "False", ")", ":", "if", "not", "allowempty", "and", "len", "(", "e", ")", "==", ...	56.333333	0.017493
def computed_fitting_parameters(self): """ A list identical to what is set with `scipy_data_fitting.Fit.fitting_parameters`, but in each dictionary, the key `value` is added with the fitted value of the quantity. The reported value is scaled by the inverse prefix. """ fit...	[ "def", "computed_fitting_parameters", "(", "self", ")", ":", "fitted_parameters", "=", "[", "]", "for", "(", "i", ",", "v", ")", "in", "enumerate", "(", "self", ".", "fitting_parameters", ")", ":", "param", "=", "v", ".", "copy", "(", ")", "param", "["...	44.307692	0.008503
def _finish_disconnection_action(self, action): """Finish a disconnection attempt There are two possible outcomes: - if we were successful at disconnecting, we transition to disconnected - if we failed at disconnecting, we transition back to idle Args: action (Conne...	[ "def", "_finish_disconnection_action", "(", "self", ",", "action", ")", ":", "success", "=", "action", ".", "data", "[", "'success'", "]", "conn_key", "=", "action", ".", "data", "[", "'id'", "]", "if", "self", ".", "_get_connection_state", "(", "conn_key", ...	37.511628	0.001813
def check_required_params(self): """ Check if all required parameters are set""" for param in self.REQUIRED_FIELDS: if param not in self.params: raise ValidationError("Missing parameter: {}".format(param))	[ "def", "check_required_params", "(", "self", ")", ":", "for", "param", "in", "self", ".", "REQUIRED_FIELDS", ":", "if", "param", "not", "in", "self", ".", "params", ":", "raise", "ValidationError", "(", "\"Missing parameter: {}\"", ".", "format", "(", "param",...	49	0.008032
def _variable_type_to_read_fn(vartype, records): """Convert variant types into corresponding WDL standard library functions. """ fn_map = {"String": "read_string", "Array[String]": "read_lines", "Array[Array[String]]": "read_tsv", "Object": "read_object", "Array[Object]": "read_o...	[ "def", "_variable_type_to_read_fn", "(", "vartype", ",", "records", ")", ":", "fn_map", "=", "{", "\"String\"", ":", "\"read_string\"", ",", "\"Array[String]\"", ":", "\"read_lines\"", ",", "\"Array[Array[String]]\"", ":", "\"read_tsv\"", ",", "\"Object\"", ":", "\"...	49.5	0.001101
def _post_run_hook(self, runtime): ''' generates a report showing nine slices, three per axis, of an arbitrary volume of `in_files`, with the resulting segmentation overlaid ''' self._anat_file = self.inputs.in_files[0] outputs = self.aggregate_outputs(runtime=runtime) se...	[ "def", "_post_run_hook", "(", "self", ",", "runtime", ")", ":", "self", ".", "_anat_file", "=", "self", ".", "inputs", ".", "in_files", "[", "0", "]", "outputs", "=", "self", ".", "aggregate_outputs", "(", "runtime", "=", "runtime", ")", "self", ".", "...	48.947368	0.00211
def svd(a, i=None) -> tuple: """Singular Value Decomposition. Factors the matrix `a` as ``u * np.diag(s) * v``, where `u` and `v` are unitary and `s` is a 1D array of `a`'s singular values. Parameters ---------- a : array_like Input array. i : int or slice (optional) What s...	[ "def", "svd", "(", "a", ",", "i", "=", "None", ")", "->", "tuple", ":", "u", ",", "s", ",", "v", "=", "np", ".", "linalg", ".", "svd", "(", "a", ",", "full_matrices", "=", "False", ",", "compute_uv", "=", "True", ")", "u", "=", "u", ".", "T...	25.64	0.001504
def seqres_lines(self): """Generate SEQRES lines representing the contents""" lines = [] for chain in self.keys(): seq = self[chain] serNum = 1 startidx = 0 while startidx < len(seq): endidx = min(startidx+13, len(seq)) lines += ["SEQRES %2i %s %4i %s\n" % (se...	[ "def", "seqres_lines", "(", "self", ")", ":", "lines", "=", "[", "]", "for", "chain", "in", "self", ".", "keys", "(", ")", ":", "seq", "=", "self", "[", "chain", "]", "serNum", "=", "1", "startidx", "=", "0", "while", "startidx", "<", "len", "(",...	26.5625	0.020455
def dev_ij(i,j,traj_exp,adj_mat): #takes adjacency matrix and raw expression data ''' Function returns the sum of squared differences in the expression of a gene, per cell :param i: int representing the index of the cell being processed :param j: int representing the index of the gene being processed ...	[ "def", "dev_ij", "(", "i", ",", "j", ",", "traj_exp", ",", "adj_mat", ")", ":", "#takes adjacency matrix and raw expression data", "t", "=", "np", ".", "asmatrix", "(", "traj_exp", ")", "wh", "=", "np", ".", "where", "(", "adj_mat", "[", "i", "]", ">", ...	57.833333	0.028369
def get_alert_version(self, id, version, **kwargs): # noqa: E501 """Get a specific historical version of a specific alert # noqa: E501 # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> t...	[ "def", "get_alert_version", "(", "self", ",", "id", ",", "version", ",", "", "", "kwargs", ")", ":", "# noqa: E501", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async_req'", ")", ":", "return", "self", ...	43.681818	0.002037
def BE_vs_clean_SE(self, delu_dict, delu_default=0, plot_eads=False, annotate_monolayer=True, JPERM2=False): """ For each facet, plot the clean surface energy against the most stable binding energy. Args: delu_dict (Dict): Dictionary of the chemical...	[ "def", "BE_vs_clean_SE", "(", "self", ",", "delu_dict", ",", "delu_default", "=", "0", ",", "plot_eads", "=", "False", ",", "annotate_monolayer", "=", "True", ",", "JPERM2", "=", "False", ")", ":", "plt", "=", "pretty_plot", "(", "width", "=", "8", ",", ...	49.191489	0.00212
def get_noconflict_metaclass(bases, left_metas, right_metas): """ Not intended to be used outside of this module, unless you know what you are doing. """ # make tuple of needed metaclasses in specified priority order metas = left_metas + tuple(map(type, bases)) + right_metas needed_metas = remov...	[ "def", "get_noconflict_metaclass", "(", "bases", ",", "left_metas", ",", "right_metas", ")", ":", "# make tuple of needed metaclasses in specified priority order", "metas", "=", "left_metas", "+", "tuple", "(", "map", "(", "type", ",", "bases", ")", ")", "+", "right...	45.958333	0.001776
def preprocess_D_segs(self, generative_model, genomic_data): """Process P(delDl, delDr\|D) into Pi arrays. Sets the attributes PD_nt_pos_vec, PD_2nd_nt_pos_per_aa_vec, min_delDl_given_DdelDr, max_delDl_given_DdelDr, and zeroD_given_D. Parameters ---------- g...	[ "def", "preprocess_D_segs", "(", "self", ",", "generative_model", ",", "genomic_data", ")", ":", "cutD_genomic_CDR3_segs", "=", "genomic_data", ".", "cutD_genomic_CDR3_segs", "nt2num", "=", "{", "'A'", ":", "0", ",", "'C'", ":", "1", ",", "'G'", ":", "2", ",...	49.683544	0.008743
def history(self, period="1mo", interval="1d", start=None, end=None, prepost=False, actions=True, auto_adjust=True): """ :Parameters: period : str Valid periods: 1d,5d,1mo,3mo,6mo,1y,2y,5y,10y,ytd,max Either Use period parameter...	[ "def", "history", "(", "self", ",", "period", "=", "\"1mo\"", ",", "interval", "=", "\"1d\"", ",", "start", "=", "None", ",", "end", "=", "None", ",", "prepost", "=", "False", ",", "actions", "=", "True", ",", "auto_adjust", "=", "True", ")", ":", ...	36.286885	0.00088
def ipv4_reassembly(packet, *, count=NotImplemented): """Make data for IPv4 reassembly.""" ipv4 = getattr(packet, 'ip', None) if ipv4 is not None: if ipv4.df: # dismiss not fragmented packet return False, None data = dict( bufid=( ipaddress.ip_addr...	[ "def", "ipv4_reassembly", "(", "packet", ",", "*", ",", "count", "=", "NotImplemented", ")", ":", "ipv4", "=", "getattr", "(", "packet", ",", "'ip'", ",", "None", ")", "if", "ipv4", "is", "not", "None", ":", "if", "ipv4", ".", "df", ":", "# dismiss n...	57.043478	0.008996
def levinson_1d(r, order): """Levinson-Durbin recursion, to efficiently solve symmetric linear systems with toeplitz structure. Parameters --------- r : array-like input array to invert (since the matrix is symmetric Toeplitz, the corresponding pxp matrix is defined by p items only)...	[ "def", "levinson_1d", "(", "r", ",", "order", ")", ":", "r", "=", "np", ".", "atleast_1d", "(", "r", ")", "if", "r", ".", "ndim", ">", "1", ":", "raise", "ValueError", "(", "\"Only rank 1 are supported for now.\"", ")", "n", "=", "r", ".", "size", "i...	30.128571	0.000459
def register_trigger(when=None, when_not=None, set_flag=None, clear_flag=None): """ Register a trigger to set or clear a flag when a given flag is set. Note: Flag triggers are handled at the same time that the given flag is set. :param str when: Flag to trigger on when it is set. :param str when_n...	[ "def", "register_trigger", "(", "when", "=", "None", ",", "when_not", "=", "None", ",", "set_flag", "=", "None", ",", "clear_flag", "=", "None", ")", ":", "if", "not", "any", "(", "(", "when", ",", "when_not", ")", ")", ":", "raise", "ValueError", "(...	48.115385	0.002351
def bulkBatch(symbols, fields=None, range_='1m', last=10, token='', version=''): '''Optimized batch to fetch as much as possible at once https://iexcloud.io/docs/api/#batch-requests Args: symbols (list); List of tickers to request fields (list); List of fields to request range_ (s...	[ "def", "bulkBatch", "(", "symbols", ",", "fields", "=", "None", ",", "range_", "=", "'1m'", ",", "last", "=", "10", ",", "token", "=", "''", ",", "version", "=", "''", ")", ":", "fields", "=", "fields", "or", "_BATCH_TYPES", "args", "=", "[", "]", ...	27.340426	0.001503
def _offset_format_timestamp1(src_tstamp_str, src_format, dst_format, ignore_unparsable_time=True, context=None): """ Convert a source timeStamp string into a destination timeStamp string, attempting to apply the correct offset if both the server and local timeZone are reco...	[ "def", "_offset_format_timestamp1", "(", "src_tstamp_str", ",", "src_format", ",", "dst_format", ",", "ignore_unparsable_time", "=", "True", ",", "context", "=", "None", ")", ":", "if", "not", "src_tstamp_str", ":", "return", "False", "res", "=", "src_tstamp_str",...	48.173913	0.000442
def create_factories(fs_provider, task_problem_types, hook_manager=None, course_class=Course, task_class=Task): """ Shorthand for creating Factories :param fs_provider: A FileSystemProvider leading to the courses :param hook_manager: an Hook Manager instance. If None, a new Hook Manager is created :...	[ "def", "create_factories", "(", "fs_provider", ",", "task_problem_types", ",", "hook_manager", "=", "None", ",", "course_class", "=", "Course", ",", "task_class", "=", "Task", ")", ":", "if", "hook_manager", "is", "None", ":", "hook_manager", "=", "HookManager",...	51.214286	0.008219
def get_operations(self, indices: Sequence[LogicalIndex], qubits: Sequence[ops.Qid] ) -> ops.OP_TREE: """Gets the logical operations to apply to qubits."""	[ "def", "get_operations", "(", "self", ",", "indices", ":", "Sequence", "[", "LogicalIndex", "]", ",", "qubits", ":", "Sequence", "[", "ops", ".", "Qid", "]", ")", "->", "ops", ".", "OP_TREE", ":" ]	45.6	0.021552
def load_rv_data(filename, indep, dep, indweight=None, dir='./'): """ load dictionary with rv data. """ if '/' in filename: path, filename = os.path.split(filename) else: path = dir load_file = os.path.join(path, filename) rvdata = np.loadtxt(load_file) d ={} d['p...	[ "def", "load_rv_data", "(", "filename", ",", "indep", ",", "dep", ",", "indweight", "=", "None", ",", "dir", "=", "'./'", ")", ":", "if", "'/'", "in", "filename", ":", "path", ",", "filename", "=", "os", ".", "path", ".", "split", "(", "filename", ...	29.176471	0.010732
def check_valid(self, get_params): """ see if the if condition for a block is valid """ if self.commands._if: return self.commands._if.check_valid(get_params)	[ "def", "check_valid", "(", "self", ",", "get_params", ")", ":", "if", "self", ".", "commands", ".", "_if", ":", "return", "self", ".", "commands", ".", "_if", ".", "check_valid", "(", "get_params", ")" ]	32.833333	0.009901
def urls(order_by: Optional[str] = None): """List all URLs registered with the app.""" url_rules: List[Rule] = current_app.url_map._rules # sort the rules. by default they're sorted by priority, # ie in the order they were registered with the app if order_by == 'view': url_rules = sorted(ur...	[ "def", "urls", "(", "order_by", ":", "Optional", "[", "str", "]", "=", "None", ")", ":", "url_rules", ":", "List", "[", "Rule", "]", "=", "current_app", ".", "url_map", ".", "_rules", "# sort the rules. by default they're sorted by priority,", "# ie in the order t...	46.545455	0.001914
def _add_node(self, node, depth): """Add a node to the graph, and the stack.""" self._topmost_node.add_child(node, bool(depth[1])) self._stack.append((depth, node))	[ "def", "_add_node", "(", "self", ",", "node", ",", "depth", ")", ":", "self", ".", "_topmost_node", ".", "add_child", "(", "node", ",", "bool", "(", "depth", "[", "1", "]", ")", ")", "self", ".", "_stack", ".", "append", "(", "(", "depth", ",", "...	46.25	0.010638
def getShare(self, shareID): """ Retrieve a proxy object for a given shareID, previously shared with this role or one of its group roles via L{Role.shareItem}. @return: a L{SharedProxy}. This is a wrapper around the shared item which only exposes those interfaces explicitly all...	[ "def", "getShare", "(", "self", ",", "shareID", ")", ":", "shares", "=", "list", "(", "self", ".", "store", ".", "query", "(", "Share", ",", "AND", "(", "Share", ".", "shareID", "==", "shareID", ",", "Share", ".", "sharedTo", ".", "oneOf", "(", "se...	38.583333	0.002107
def get_variant_genotypes(self, variant): """Get the genotypes from a well formed variant instance. Args: marker (Variant): A Variant instance. Returns: A list of Genotypes instance containing a pointer to the variant as well as a vector of encoded genotypes...	[ "def", "get_variant_genotypes", "(", "self", ",", "variant", ")", ":", "# Find the variant in the bim.", "try", ":", "plink_chrom", "=", "CHROM_STR_TO_INT", "[", "variant", ".", "chrom", ".", "name", "]", "except", "KeyError", ":", "raise", "ValueError", "(", "\...	29.789474	0.001711
def merge(constraints): """Merge ``constraints``. It removes dupplicate, pruned and merged constraints. :param constraints: Current constraints. :type constraints: Iterable of :class:`.Constraint` objects. :rtype: :func:`list` of :class:`.Constraint` objects. :raises: :exc:`.ExclusiveConstrain...	[ "def", "merge", "(", "constraints", ")", ":", "# Dictionary :class:`Operator`: set of :class:`Version`.", "operators", "=", "defaultdict", "(", "set", ")", "for", "constraint", "in", "constraints", ":", "operators", "[", "constraint", ".", "operator", "]", ".", "add...	36.706897	0.000229
def get_cloudformation_client(service_name, environment_name): """ Given a service name and an environment name, return a boto CloudFormation client object. """ region = service_registry.service_region(service_name) if whereami() == 'ec2': profile = None else: profile = get_...	[ "def", "get_cloudformation_client", "(", "service_name", ",", "environment_name", ")", ":", "region", "=", "service_registry", ".", "service_region", "(", "service_name", ")", "if", "whereami", "(", ")", "==", "'ec2'", ":", "profile", "=", "None", "else", ":", ...	31.714286	0.002188
def to_bool(self, value): """ Converts a sheet string value to a boolean value. Needed because of utf-8 conversions """ try: value = value.lower() except: pass try: value = value.encode('utf-8') except: pass ...	[ "def", "to_bool", "(", "self", ",", "value", ")", ":", "try", ":", "value", "=", "value", ".", "lower", "(", ")", "except", ":", "pass", "try", ":", "value", "=", "value", ".", "encode", "(", "'utf-8'", ")", "except", ":", "pass", "try", ":", "va...	22.333333	0.010225
def delete(gandi, domain, zone_id, name, type, value): """Delete a record entry for a domain""" if not zone_id: result = gandi.domain.info(domain) zone_id = result['zone_id'] if not zone_id: gandi.echo('No zone records found, domain %s doesn\'t seems to be ' 'mana...	[ "def", "delete", "(", "gandi", ",", "domain", ",", "zone_id", ",", "name", ",", "type", ",", "value", ")", ":", "if", "not", "zone_id", ":", "result", "=", "gandi", ".", "domain", ".", "info", "(", "domain", ")", "zone_id", "=", "result", "[", "'zo...	41.55	0.001176
def cache_last_modified(request, argz, *kwz): '''Last modification date for a cached page. Intended for usage in conditional views (@condition decorator).''' response, site, cachekey = kwz.get('_view_data') or initview(request) if not response: return None return response[1]	[ "def", "cache_last_modified", "(", "request", ",", "", "argz", ",", "", "*", "kwz", ")", ":", "response", ",", "site", ",", "cachekey", "=", "kwz", ".", "get", "(", "'_view_data'", ")", "or", "initview", "(", "request", ")", "if", "not", "response", ...	46.333333	0.024735
def iri_to_str(self, iri_: ShExDocParser.IriContext) -> str: """ iri: IRIREF \| prefixedName """ if iri_.IRIREF(): return self.iriref_to_str(iri_.IRIREF()) else: return self.prefixedname_to_str(iri_.prefixedName())	[ "def", "iri_to_str", "(", "self", ",", "iri_", ":", "ShExDocParser", ".", "IriContext", ")", "->", "str", ":", "if", "iri_", ".", "IRIREF", "(", ")", ":", "return", "self", ".", "iriref_to_str", "(", "iri_", ".", "IRIREF", "(", ")", ")", "else", ":",...	37.714286	0.011111
def _get_edge_date(self, date_field, sort): ''' This method is used to get start and end dates for the collection. ''' return self._source.query(self._source_coll, { 'q':':', 'rows':1, 'fq':'+{}:*'.format(date_field), ...	[ "def", "_get_edge_date", "(", "self", ",", "date_field", ",", "sort", ")", ":", "return", "self", ".", "_source", ".", "query", "(", "self", ".", "_source_coll", ",", "{", "'q'", ":", "':'", ",", "'rows'", ":", "1", ",", "'fq'", ":", "'+{}:*'", "."...	41.888889	0.015584
def RNN_step(weights, gates): """Create a step model for an RNN, given weights and gates functions.""" def rnn_step_fwd(prevstate_inputs, drop=0.0): prevstate, inputs = prevstate_inputs cell_tm1, hidden_tm1 = prevstate acts, bp_acts = weights.begin_update((inputs, hidden_tm1), drop=dro...	[ "def", "RNN_step", "(", "weights", ",", "gates", ")", ":", "def", "rnn_step_fwd", "(", "prevstate_inputs", ",", "drop", "=", "0.0", ")", ":", "prevstate", ",", "inputs", "=", "prevstate_inputs", "cell_tm1", ",", "hidden_tm1", "=", "prevstate", "acts", ",", ...	38.416667	0.002116
def sources_add(source_uri, ruby=None, runas=None, gem_bin=None): ''' Add a gem source. :param source_uri: string The source URI to add. :param gem_bin: string : None Full path to ``gem`` binary to use. :param ruby: string : None If RVM or rbenv are installed, the ruby versi...	[ "def", "sources_add", "(", "source_uri", ",", "ruby", "=", "None", ",", "runas", "=", "None", ",", "gem_bin", "=", "None", ")", ":", "return", "_gem", "(", "[", "'sources'", ",", "'--add'", ",", "source_uri", "]", ",", "ruby", ",", "gem_bin", "=", "g...	27.833333	0.001447
def engine(func): """Callback-oriented decorator for asynchronous generators. This is an older interface; for new code that does not need to be compatible with versions of Tornado older than 3.0 the `coroutine` decorator is recommended instead. This decorator is similar to `coroutine`, except it d...	[ "def", "engine", "(", "func", ")", ":", "func", "=", "_make_coroutine_wrapper", "(", "func", ",", "replace_callback", "=", "False", ")", "@", "functools", ".", "wraps", "(", "func", ")", "def", "wrapper", "(", "", "args", ",", "", "*", "kwargs", ")",...	42.272727	0.000701
def safe_chmod(path, mode): """Set the permissions mode on path, but only if it differs from the current mode. """ if stat.S_IMODE(os.stat(path).st_mode) != mode: os.chmod(path, mode)	[ "def", "safe_chmod", "(", "path", ",", "mode", ")", ":", "if", "stat", ".", "S_IMODE", "(", "os", ".", "stat", "(", "path", ")", ".", "st_mode", ")", "!=", "mode", ":", "os", ".", "chmod", "(", "path", ",", "mode", ")" ]	39.8	0.009852
def colfieldnames(self, columnname, keyword=''): """Get the names of the fields in a column keyword value. The value of a keyword can be a struct (python dict). This method returns the names of the fields in that struct. Each field in a struct can be a struct in itself. Names of fields ...	[ "def", "colfieldnames", "(", "self", ",", "columnname", ",", "keyword", "=", "''", ")", ":", "if", "isinstance", "(", "keyword", ",", "str", ")", ":", "return", "self", ".", "_getfieldnames", "(", "columnname", ",", "keyword", ",", "-", "1", ")", "else...	45.190476	0.002064
def s_res(self, components=None): """ Get apparent power in kVA at line(s) and transformer(s). Parameters ---------- components : :obj:`list` List of string representatives of :class:`~.grid.components.Line` or :class:`~.grid.components.Transformer`. If n...	[ "def", "s_res", "(", "self", ",", "components", "=", "None", ")", ":", "if", "components", "is", "None", ":", "return", "self", ".", "apparent_power", "else", ":", "not_included", "=", "[", "_", "for", "_", "in", "components", "if", "_", "not", "in", ...	36.827586	0.001825
def is_valid_mac(mac): """Returns True if the given MAC address is valid. The given MAC address should be a colon hexadecimal notation string. Samples: - valid address: aa:bb:cc:dd:ee:ff, 11:22:33:44:55:66 - invalid address: aa:bb:cc:dd, 11-22-33-44-55-66, etc. """ return bool(re.m...	[ "def", "is_valid_mac", "(", "mac", ")", ":", "return", "bool", "(", "re", ".", "match", "(", "r'^'", "+", "r'[\\:\\-]'", ".", "join", "(", "[", "r'([0-9a-f]{2})'", "]", "*", "6", ")", "+", "r'$'", ",", "mac", ".", "lower", "(", ")", ")", ")" ]	37	0.002398
def _null_ria(direction, mechanism, purview, repertoire=None, phi=0.0): """The irreducibility analysis for a reducible mechanism.""" # TODO Use properties here to infer mechanism and purview from # partition yet access them with .mechanism and .partition return RepertoireIrreducibilityAnalysis( ...	[ "def", "_null_ria", "(", "direction", ",", "mechanism", ",", "purview", ",", "repertoire", "=", "None", ",", "phi", "=", "0.0", ")", ":", "# TODO Use properties here to infer mechanism and purview from", "# partition yet access them with .mechanism and .partition", "return", ...	38.153846	0.001969
def parse_timedelta(value): """ Parses a string and return a datetime.timedelta. :param value: string to parse :type value: str :return: timedelta object or None if value is None :rtype: timedelta/None :raise: TypeError when value is not string :raise: ValueError when value is not proper...	[ "def", "parse_timedelta", "(", "value", ")", ":", "if", "value", "is", "None", ":", "return", "None", "if", "not", "isinstance", "(", "value", ",", "six", ".", "string_types", ")", ":", "raise", "TypeError", "(", "'value must be a string type'", ")", "match"...	31.916667	0.001267
def _get_soil_depth_term(self, C, z1pt0, vs30): """ Compute and return soil depth term. See page 1042. """ # Get reference z1pt0 z1ref = self._get_z1pt0ref(vs30) # Get z1pt0 z10 = copy.deepcopy(z1pt0) # This is used for the calculation of the motion on re...	[ "def", "_get_soil_depth_term", "(", "self", ",", "C", ",", "z1pt0", ",", "vs30", ")", ":", "# Get reference z1pt0", "z1ref", "=", "self", ".", "_get_z1pt0ref", "(", "vs30", ")", "# Get z1pt0", "z10", "=", "copy", ".", "deepcopy", "(", "z1pt0", ")", "# This...	43.391304	0.001961

def write_r(df, f, sep=",", index_join="@", columns_join="."): """ Export dataframe in a format easily importable to R Index fields are joined with "@" and column fields by "." by default. :param df: :param f: :param index_join: :param columns_join: :return: """ df = df.copy() ...

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def extend_results_extrapoling_relations(helper): """Try to extract the bigger group of interlinked tokens. Should generally be used at last in the collectors chain. """ if not helper.bucket_dry: return # No need. tokens = set(helper.meaningful + helper.common) for relation in _extract...

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async def get_object(source, *args): """Get object asynchronously. :param source: mode class or query to get object from :param args: lookup parameters :return: model instance or raises ``peewee.DoesNotExist`` if object not found """ warnings.warn("get_object() is deprecated, Manager.ge...

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def get_field_info(self, field, field_name): """ Given an instance of a serializer field, return a dictionary of metadata about it. """ field_info = OrderedDict() field_info['type'] = self.label_lookup[field] field_info['required'] = getattr(field, 'required', Fal...

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def EAS2TAS(ARSP,GPS,BARO,ground_temp=25): '''EAS2TAS from ARSP.Temp''' tempK = ground_temp + 273.15 - 0.0065 * GPS.Alt return sqrt(1.225 / (BARO.Press / (287.26 * tempK)))

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def is_balance_proof_usable_onchain( received_balance_proof: BalanceProofSignedState, channel_state: NettingChannelState, sender_state: NettingChannelEndState, ) -> SuccessOrError: """ Checks the balance proof can be used on-chain. For a balance proof to be valid it must be newer than t...

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def _initEphemerals(self): """ Initialize all ephemeral members after being restored to a pickled state. """ ## We store the lists of segments updates, per cell, so that they can be # applied later during learning, when the cell gets bottom-up activation. # We store one list per cell. The lists ...

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def get_single_lab(lab_slug): """Gets data from a single lab from makeinitaly.foundation.""" wiki = MediaWiki(makeinitaly__foundation_api_url) wiki_response = wiki.call( {'action': 'query', 'titles': lab_slug, 'prop': 'revisions', 'rvprop': 'content'}) # If we don't k...

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def json_request_response(f): """ Parse the JSON from an API response. We do this in a decorator so that our Twisted library can reuse the underlying functions """ @wraps(f) def wrapper(*args, **kwargs): response = f(*args, **kwargs) response.raise_for_status() return jso...

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def fetchall(self): """ returns the remainder of records from the query. This is guaranteed by locking, so that no other thread can grab a few records while the set is fetched. This has the side effect that other threads may have to wait for an arbitrary long time until this query is done before the...

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def autorun_filters(filters, doc, search_dirs, verbose): """ :param filters: list of str :param doc: panflute.Doc :param search_dirs: list of str :param verbose: bool :return: panflute.Doc """ def remove_py(s): return s[:-3] if s.endswith('.py') else s filter_paths = [] ...

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def flat_map(coro, iterable, limit=0, loop=None, timeout=None, return_exceptions=False, initializer=None, *args, **kw): """ Concurrently iterates values yielded from an iterable, passing them to an asynchronous coroutine. This function is the flatten version of to ``paco.map()``. Mapp...

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def proposal_metrics(iou): """ Add summaries for RPN proposals. Args: iou: nxm, #proposal x #gt """ # find best roi for each gt, for summary only best_iou = tf.reduce_max(iou, axis=0) mean_best_iou = tf.reduce_mean(best_iou, name='best_iou_per_gt') summaries = [mean_best_iou] ...

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def _load_instance(self, instance_id, force_reload=True): """ Return instance with the given id. For performance reasons, the instance ID is first searched for in the collection of VM instances started by ElastiCluster (`self._instances`), then in the list of all instances known...

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def get_mean_and_stddevs(self, sites, rup, dists, imt, stddev_types): """ See :meth:`superclass method <.base.GroundShakingIntensityModel.get_mean_and_stddevs>` for spec of input and result values. """ # Extracting dictionary of coefficients specific to required ...

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def to_trajectory(self, show_ports=False, chains=None, residues=None, box=None): """Convert to an md.Trajectory and flatten the compound. Parameters ---------- show_ports : bool, optional, default=False Include all port atoms when converting to trajecto...

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def put(self, items, indexes=True): '''Adds feature collections to the store. This efficiently adds multiple FCs to the store. The iterable of ``items`` given should yield tuples of ``(content_id, FC)``. :param items: Iterable of ``(content_id, FC)``. :param [str] feature_names...

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def read(scope, filename): """ Reads the given file and returns the result. The result is also stored in the built-in __response__ variable. :type filename: string :param filename: A filename. :rtype: string :return: The content of the file. """ with open(filename[0], 'r') as fp: ...

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def proto_0201(theABF): """protocol: membrane test.""" abf=ABF(theABF) abf.log.info("analyzing as a membrane test") plot=ABFplot(abf) plot.figure_height,plot.figure_width=SQUARESIZE/2,SQUARESIZE/2 plot.figure_sweeps() # save it plt.tight_layout() frameAndSave(abf,"membrane test") ...

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def evaluate(self, verbose=True, passes=None): """Summary Returns: TYPE: Description """ i = 0 exprs = [] for column_name in self.column_names: if len(self.column_names) > 1: index = "1.$%d" % i else: in...

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def write_sub_file(self): """ Write a submit file for this Condor job. """ if not self.__log_file: raise CondorSubmitError, "Log file not specified." if not self.__err_file: raise CondorSubmitError, "Error file not specified." if not self.__out_file: raise CondorSubmitError, "O...

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38.584416

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def plot(self, fig=None, draw=True): """ Plot the filter Parameters ---------- fig: bokeh.plotting.figure (optional) A figure to plot on draw: bool Draw the figure, else return it Returns ------- bokeh.plotting.figure ...

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27.236842

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def step(self, **args): """ Network.step() Does a single step. Calls propagate(), backprop(), and change_weights() if learning is set. Format for parameters: <layer name> = <activation/target list> """ if self.verbosity > 0: print("Network.ste...

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45.382979

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def open_file_cont(self, pathspec, loader_cont_fn): """Open a file and do some action on it. Parameters ---------- pathspec : str The path of the file to load (can be a URI, but must reference a local file). loader_cont_fn : func (data_obj) -> None ...

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def register_actions(self, shortcut_manager): """Register callback methods fot triggered actions. :param rafcon.gui.shortcut_manager.ShortcutManager shortcut_manager: Shortcut Manager Object holding mappings between shortcuts and actions. """ shortcut_manager.add_callback_fo...

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def terminate_processes(pid_list): """Terminate a list of processes by sending to each of them a SIGTERM signal, pre-emptively checking if its PID might have been reused. Parameters ---------- pid_list : list A list of process identifiers identifying active processes. """ ...

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def new_conn(self): """ Create a new ConnectionWrapper instance :return: """ """ :return: """ logger.debug("Opening new connection to rethinkdb with args=%s" % self._conn_args) return ConnectionWrapper(self._pool, **self._conn_args)

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29.5

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def rotated_Gamma_ml(m,l,phi1,phi2,theta1,theta2,gamma_ml): """ This function takes any gamma in the computational frame and rotates it to the cosmic frame. """ rotated_gamma = 0 for ii in range(2*l+1): rotated_gamma += Dlmk(l,m,ii-l,phi1,phi2,theta1,theta2).conjugate()*g...

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def parse_args(): '''Parse command line arguments''' parser = argparse.ArgumentParser( description='Morphology fit distribution extractor', epilog='Note: Outputs json of the optimal distribution \ and corresponding parameters.') parser.add_argument('datapaths', ...

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37.666667

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def filter(self, func): """Returns a packet list filtered by a truth function""" return self.__class__(list(filter(func,self.res)), name="filtered %s"%self.listname)

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def load(cls, stream): """Load a serialized version of self from text stream. Expects the format used by mongooplog. """ data = json.load(stream)['ts'] return cls(data['time'], data['inc'])

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def getServerStates(pbclient=None, dc_id=None, serverid=None, servername=None): ''' gets states of a server''' if pbclient is None: raise ValueError("argument 'pbclient' must not be None") if dc_id is None: raise ValueError("argument 'dc_id' must not be None") server = None if server...

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def authentication(self, event): """Links the client to the granted account and profile, then notifies the client""" try: self.log("Authorization has been granted by DB check:", event.username, lvl=debug) account, profile, clientconfig = event.userd...

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def run_query(self, collection_name, query): """ method runs query on a specified collection and return a list of filtered Job records """ cursor = self.ds.filter(collection_name, query) return [Job.from_json(document) for document in cursor]

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def msvc_batch_key(action, env, target, source): """ Returns a key to identify unique batches of sources for compilation. If batching is enabled (via the $MSVC_BATCH setting), then all target+source pairs that use the same action, defined by the same environment, and have the same target and source...

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def spectrogram(samples, fft_length=256, sample_rate=2, hop_length=128): """ Compute the spectrogram for a real signal. The parameters follow the naming convention of matplotlib.mlab.specgram Args: samples (1D array): input audio signal fft_length (int): number of elements in fft win...

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def index(objects, attr): """ Generate a mapping of a list of objects indexed by the given attr. Parameters ---------- objects : :class:`list`, iterable attr : string The attribute to index the list of objects by Returns ------- dictionary : dict keys are the value ...

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def remove_index(self): """Remove Elasticsearch index associated to the campaign""" self.index_client.close(self.index_name) self.index_client.delete(self.index_name)

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def make_primitive(cas_coords, window_length=3): """Calculates running average of cas_coords with a fixed averaging window_length. Parameters ---------- cas_coords : list(numpy.array or float or tuple) Each element of the list must have length 3. window_length : int, optional The nu...

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def _iter_channels(framefile): """Yields the name and type of each channel in a GWF file TOC **Requires:** |LDAStools.frameCPP|_ Parameters ---------- framefile : `str`, `LDAStools.frameCPP.IFrameFStream` path of GWF file, or open file stream, to read """ from LDAStools import fram...

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def sizeClassifier(path, min_size=DEFAULTS['min_size']): """Sort a file into a group based on on-disk size. :param paths: See :func:`fastdupes.groupify` :param min_size: Files smaller than this size (in bytes) will be ignored. :type min_size: :class:`__builtins__.int` :returns: See :func:`fastdup...

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def state(self): """ Describe the state of a Job. Returns: A string describing the job's state. """ state = 'in progress' if self.is_complete: if self.failed: state = 'failed with error: %s' % str(self._fatal_error) elif self._errors: state = 'completed with some non-fat...

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def begin(self, total: int, name=None, message=None): """Call before starting work on a monitor, specifying name and amount of work""" self.total = total message = message or name or "Working..." self.name = name or "ProgressMonitor" self.update(0, message)

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def element(self): """Pymatgen :class:`Element`.""" try: return Element.from_Z(self.Z) except (KeyError, IndexError): return Element.from_Z(int(self.Z))

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def save( self ): """ Saves the values from the editor to the system. """ schema = self.schema() if ( not schema ): self.saved.emit() return record = self.record() if not record: record = self._model() ...

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def clean_text_by_word(text, language="english", deacc=False, additional_stopwords=None): """ Tokenizes a given text into words, applying filters and lemmatizing them. Returns a dict of word -> syntacticUnit. """ init_textcleanner(language, additional_stopwords) text_without_acronyms = replace_with_sepa...

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def receive_id_from_server(self): """ Listen for an id from the server. At the beginning of a game, each client receives an IdFactory from the server. This factory are used to give id numbers that are guaranteed to be unique to tokens that created locally. This method checks...

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def do_POST(self): """Handles the HTTP POST request. Attempts to interpret all HTTP POST requests as XML-RPC calls, which are forwarded to the server's _dispatch method for handling. """ # Check that the path is legal if not self.is_rpc_path_valid(): self.re...

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def parse(self): """Generate a argparse parser and parse the command-line arguments""" if self.parser is None: self.makeParser() self.args = self.parser.parse_args() self.verbose = self.args.verbose

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def get_alias(cls): """Returns messenger alias. :return: str :rtype: str """ if cls.alias is None: cls.alias = cls.__name__ return cls.alias

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def _google_v2_parse_arguments(args): """Validated google-v2 arguments.""" if (args.zones and args.regions) or (not args.zones and not args.regions): raise ValueError('Exactly one of --regions and --zones must be specified') if args.machine_type and (args.min_cores or args.min_ram): raise ValueError( ...

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def handler(self): """gets the security handler for the class""" if hasNTLM: if self._handler is None: passman = request.HTTPPasswordMgrWithDefaultRealm() passman.add_password(None, self._parsed_org_url, self._login_username, self._password) se...

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def _parse_programs(self, string, parent, filepath=None): """Extracts a PROGRAM from the specified fortran code file.""" #First, get hold of the docstrings for all the modules so that we can #attach them as we parse them. moddocs = self.docparser.parse_docs(string) #Now look for...

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def _extract_device_name_from_event(event): """Extract device name from a tf.Event proto carrying tensor value.""" plugin_data_content = json.loads( tf.compat.as_str(event.summary.value[0].metadata.plugin_data.content)) return plugin_data_content['device']

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def _write(self, _new=False): """Writes the values of the attributes to the datastore. This method also creates the indices and saves the lists associated to the object. """ pipeline = self.db.pipeline() self._create_membership(pipeline) self._update_indices(pipe...

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async def install_update(filename, loop): """ Install the update into the system environment. """ log.info("Installing update server into system environment") log.debug('File {} exists? {}'.format(filename, os.path.exists(filename))) out, err, returncode = await _install(sys.executable, filename...

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def hascurrent(self, allowempty=False): """Does the correction record the current authoritative annotation (needed only in a structural context when suggestions are proposed)""" for e in self.select(Current,None,False, False): if not allowempty and len(e) == 0: continue return Tr...

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def computed_fitting_parameters(self): """ A list identical to what is set with `scipy_data_fitting.Fit.fitting_parameters`, but in each dictionary, the key `value` is added with the fitted value of the quantity. The reported value is scaled by the inverse prefix. """ fit...

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def _finish_disconnection_action(self, action): """Finish a disconnection attempt There are two possible outcomes: - if we were successful at disconnecting, we transition to disconnected - if we failed at disconnecting, we transition back to idle Args: action (Conne...

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def check_required_params(self): """ Check if all required parameters are set""" for param in self.REQUIRED_FIELDS: if param not in self.params: raise ValidationError("Missing parameter: {}".format(param))

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def _variable_type_to_read_fn(vartype, records): """Convert variant types into corresponding WDL standard library functions. """ fn_map = {"String": "read_string", "Array[String]": "read_lines", "Array[Array[String]]": "read_tsv", "Object": "read_object", "Array[Object]": "read_o...

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def _post_run_hook(self, runtime): ''' generates a report showing nine slices, three per axis, of an arbitrary volume of `in_files`, with the resulting segmentation overlaid ''' self._anat_file = self.inputs.in_files[0] outputs = self.aggregate_outputs(runtime=runtime) se...

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def svd(a, i=None) -> tuple: """Singular Value Decomposition. Factors the matrix `a` as ``u * np.diag(s) * v``, where `u` and `v` are unitary and `s` is a 1D array of `a`'s singular values. Parameters ---------- a : array_like Input array. i : int or slice (optional) What s...

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def seqres_lines(self): """Generate SEQRES lines representing the contents""" lines = [] for chain in self.keys(): seq = self[chain] serNum = 1 startidx = 0 while startidx < len(seq): endidx = min(startidx+13, len(seq)) lines += ["SEQRES %2i %s %4i %s\n" % (se...

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def dev_ij(i,j,traj_exp,adj_mat): #takes adjacency matrix and raw expression data ''' Function returns the sum of squared differences in the expression of a gene, per cell :param i: int representing the index of the cell being processed :param j: int representing the index of the gene being processed ...

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def get_alert_version(self, id, version, **kwargs): # noqa: E501 """Get a specific historical version of a specific alert # noqa: E501 # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> t...

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def BE_vs_clean_SE(self, delu_dict, delu_default=0, plot_eads=False, annotate_monolayer=True, JPERM2=False): """ For each facet, plot the clean surface energy against the most stable binding energy. Args: delu_dict (Dict): Dictionary of the chemical...

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def get_noconflict_metaclass(bases, left_metas, right_metas): """ Not intended to be used outside of this module, unless you know what you are doing. """ # make tuple of needed metaclasses in specified priority order metas = left_metas + tuple(map(type, bases)) + right_metas needed_metas = remov...

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def preprocess_D_segs(self, generative_model, genomic_data): """Process P(delDl, delDr|D) into Pi arrays. Sets the attributes PD_nt_pos_vec, PD_2nd_nt_pos_per_aa_vec, min_delDl_given_DdelDr, max_delDl_given_DdelDr, and zeroD_given_D. Parameters ---------- g...

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def history(self, period="1mo", interval="1d", start=None, end=None, prepost=False, actions=True, auto_adjust=True): """ :Parameters: period : str Valid periods: 1d,5d,1mo,3mo,6mo,1y,2y,5y,10y,ytd,max Either Use period parameter...

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def ipv4_reassembly(packet, *, count=NotImplemented): """Make data for IPv4 reassembly.""" ipv4 = getattr(packet, 'ip', None) if ipv4 is not None: if ipv4.df: # dismiss not fragmented packet return False, None data = dict( bufid=( ipaddress.ip_addr...

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def levinson_1d(r, order): """Levinson-Durbin recursion, to efficiently solve symmetric linear systems with toeplitz structure. Parameters --------- r : array-like input array to invert (since the matrix is symmetric Toeplitz, the corresponding pxp matrix is defined by p items only)...

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def register_trigger(when=None, when_not=None, set_flag=None, clear_flag=None): """ Register a trigger to set or clear a flag when a given flag is set. Note: Flag triggers are handled at the same time that the given flag is set. :param str when: Flag to trigger on when it is set. :param str when_n...

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def bulkBatch(symbols, fields=None, range_='1m', last=10, token='', version=''): '''Optimized batch to fetch as much as possible at once https://iexcloud.io/docs/api/#batch-requests Args: symbols (list); List of tickers to request fields (list); List of fields to request range_ (s...

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def _offset_format_timestamp1(src_tstamp_str, src_format, dst_format, ignore_unparsable_time=True, context=None): """ Convert a source timeStamp string into a destination timeStamp string, attempting to apply the correct offset if both the server and local timeZone are reco...

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def create_factories(fs_provider, task_problem_types, hook_manager=None, course_class=Course, task_class=Task): """ Shorthand for creating Factories :param fs_provider: A FileSystemProvider leading to the courses :param hook_manager: an Hook Manager instance. If None, a new Hook Manager is created :...

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def get_operations(self, indices: Sequence[LogicalIndex], qubits: Sequence[ops.Qid] ) -> ops.OP_TREE: """Gets the logical operations to apply to qubits."""

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def load_rv_data(filename, indep, dep, indweight=None, dir='./'): """ load dictionary with rv data. """ if '/' in filename: path, filename = os.path.split(filename) else: path = dir load_file = os.path.join(path, filename) rvdata = np.loadtxt(load_file) d ={} d['p...

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def check_valid(self, get_params): """ see if the if condition for a block is valid """ if self.commands._if: return self.commands._if.check_valid(get_params)

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def urls(order_by: Optional[str] = None): """List all URLs registered with the app.""" url_rules: List[Rule] = current_app.url_map._rules # sort the rules. by default they're sorted by priority, # ie in the order they were registered with the app if order_by == 'view': url_rules = sorted(ur...

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def _add_node(self, node, depth): """Add a node to the graph, and the stack.""" self._topmost_node.add_child(node, bool(depth[1])) self._stack.append((depth, node))

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def getShare(self, shareID): """ Retrieve a proxy object for a given shareID, previously shared with this role or one of its group roles via L{Role.shareItem}. @return: a L{SharedProxy}. This is a wrapper around the shared item which only exposes those interfaces explicitly all...

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def get_variant_genotypes(self, variant): """Get the genotypes from a well formed variant instance. Args: marker (Variant): A Variant instance. Returns: A list of Genotypes instance containing a pointer to the variant as well as a vector of encoded genotypes...

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def merge(constraints): """Merge ``constraints``. It removes dupplicate, pruned and merged constraints. :param constraints: Current constraints. :type constraints: Iterable of :class:`.Constraint` objects. :rtype: :func:`list` of :class:`.Constraint` objects. :raises: :exc:`.ExclusiveConstrain...

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def get_cloudformation_client(service_name, environment_name): """ Given a service name and an environment name, return a boto CloudFormation client object. """ region = service_registry.service_region(service_name) if whereami() == 'ec2': profile = None else: profile = get_...

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def to_bool(self, value): """ Converts a sheet string value to a boolean value. Needed because of utf-8 conversions """ try: value = value.lower() except: pass try: value = value.encode('utf-8') except: pass ...

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def delete(gandi, domain, zone_id, name, type, value): """Delete a record entry for a domain""" if not zone_id: result = gandi.domain.info(domain) zone_id = result['zone_id'] if not zone_id: gandi.echo('No zone records found, domain %s doesn\'t seems to be ' 'mana...

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def cache_last_modified(request, *argz, **kwz): '''Last modification date for a cached page. Intended for usage in conditional views (@condition decorator).''' response, site, cachekey = kwz.get('_view_data') or initview(request) if not response: return None return response[1]

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def iri_to_str(self, iri_: ShExDocParser.IriContext) -> str: """ iri: IRIREF | prefixedName """ if iri_.IRIREF(): return self.iriref_to_str(iri_.IRIREF()) else: return self.prefixedname_to_str(iri_.prefixedName())

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def _get_edge_date(self, date_field, sort): ''' This method is used to get start and end dates for the collection. ''' return self._source.query(self._source_coll, { 'q':'*:*', 'rows':1, 'fq':'+{}:*'.format(date_field), ...

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def RNN_step(weights, gates): """Create a step model for an RNN, given weights and gates functions.""" def rnn_step_fwd(prevstate_inputs, drop=0.0): prevstate, inputs = prevstate_inputs cell_tm1, hidden_tm1 = prevstate acts, bp_acts = weights.begin_update((inputs, hidden_tm1), drop=dro...

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def sources_add(source_uri, ruby=None, runas=None, gem_bin=None): ''' Add a gem source. :param source_uri: string The source URI to add. :param gem_bin: string : None Full path to ``gem`` binary to use. :param ruby: string : None If RVM or rbenv are installed, the ruby versi...

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def engine(func): """Callback-oriented decorator for asynchronous generators. This is an older interface; for new code that does not need to be compatible with versions of Tornado older than 3.0 the `coroutine` decorator is recommended instead. This decorator is similar to `coroutine`, except it d...

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def safe_chmod(path, mode): """Set the permissions mode on path, but only if it differs from the current mode. """ if stat.S_IMODE(os.stat(path).st_mode) != mode: os.chmod(path, mode)

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def colfieldnames(self, columnname, keyword=''): """Get the names of the fields in a column keyword value. The value of a keyword can be a struct (python dict). This method returns the names of the fields in that struct. Each field in a struct can be a struct in itself. Names of fields ...

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def s_res(self, components=None): """ Get apparent power in kVA at line(s) and transformer(s). Parameters ---------- components : :obj:`list` List of string representatives of :class:`~.grid.components.Line` or :class:`~.grid.components.Transformer`. If n...

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def is_valid_mac(mac): """Returns True if the given MAC address is valid. The given MAC address should be a colon hexadecimal notation string. Samples: - valid address: aa:bb:cc:dd:ee:ff, 11:22:33:44:55:66 - invalid address: aa:bb:cc:dd, 11-22-33-44-55-66, etc. """ return bool(re.m...

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def _null_ria(direction, mechanism, purview, repertoire=None, phi=0.0): """The irreducibility analysis for a reducible mechanism.""" # TODO Use properties here to infer mechanism and purview from # partition yet access them with .mechanism and .partition return RepertoireIrreducibilityAnalysis( ...

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def parse_timedelta(value): """ Parses a string and return a datetime.timedelta. :param value: string to parse :type value: str :return: timedelta object or None if value is None :rtype: timedelta/None :raise: TypeError when value is not string :raise: ValueError when value is not proper...

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def _get_soil_depth_term(self, C, z1pt0, vs30): """ Compute and return soil depth term. See page 1042. """ # Get reference z1pt0 z1ref = self._get_z1pt0ref(vs30) # Get z1pt0 z10 = copy.deepcopy(z1pt0) # This is used for the calculation of the motion on re...

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