kejian/codesearchnet-python-rebalanced · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def do_alarm_history_list(mc, args): '''List alarms state history.''' fields = {} if args.dimensions: fields['dimensions'] = utils.format_parameters(args.dimensions) if args.starttime: _translate_starttime(args) fields['start_time'] = args.starttime if args.endtime: f...	[ "def", "do_alarm_history_list", "(", "mc", ",", "args", ")", ":", "fields", "=", "{", "}", "if", "args", ".", "dimensions", ":", "fields", "[", "'dimensions'", "]", "=", "utils", ".", "format_parameters", "(", "args", ".", "dimensions", ")", "if", "args"...	34.55	0.001408
def dateAt( self, point ): """ Returns the date at the given point. :param point \| <QPoint> """ for date, data in self._dateGrid.items(): if ( data[1].contains(point) ): return QDate.fromJulianDay(date) return QDate()	[ "def", "dateAt", "(", "self", ",", "point", ")", ":", "for", "date", ",", "data", "in", "self", ".", "_dateGrid", ".", "items", "(", ")", ":", "if", "(", "data", "[", "1", "]", ".", "contains", "(", "point", ")", ")", ":", "return", "QDate", "....	30.7	0.022152
def live(self, url, resource_class, resource_args, params=None): """Get a live endpoint. Args: url(string): URL for the request resource_class(class): The class to use for entries coming from the live endpoint. resource_args(dict): Additional argum...	[ "def", "live", "(", "self", ",", "url", ",", "resource_class", ",", "resource_args", ",", "params", "=", "None", ")", ":", "return", "self", ".", "adapter", ".", "live", "(", "self", ",", "url", ",", "resource_class", ",", "resource_args", ",", "params",...	31.407407	0.002288
def add_filter_function(self, name, new_function): """ name : hashable object The object to be used as the key for this filter function. Use this object to remove the filter function in the future. Typically this is a self descriptive string. new_...	[ "def", "add_filter_function", "(", "self", ",", "name", ",", "new_function", ")", ":", "self", ".", "_filter_functions", "[", "name", "]", "=", "new_function", "self", ".", "invalidateFilter", "(", ")" ]	38.285714	0.002427
def equals_as(self, value_type, other): """ Compares this object value to specified specified value. When direct comparison gives negative results it converts values to type specified by type code and compare them again. :param value_type: the Typecode type that defined the type...	[ "def", "equals_as", "(", "self", ",", "value_type", ",", "other", ")", ":", "if", "other", "==", "None", "and", "self", ".", "value", "==", "None", ":", "return", "True", "if", "other", "==", "None", "or", "self", ".", "value", "==", "None", ":", "...	31.633333	0.010225
def betting_market_rules_update( self, rules_id, names, descriptions, account=None, **kwargs ): """ Update betting market rules :param str rules_id: Id of the betting market rules to update :param list names: Internationalized names, e.g. ``[['de', 'Foo'], ['...	[ "def", "betting_market_rules_update", "(", "self", ",", "rules_id", ",", "names", ",", "descriptions", ",", "account", "=", "None", ",", "", "", "kwargs", ")", ":", "assert", "isinstance", "(", "names", ",", "list", ")", "assert", "isinstance", "(", "des...	40.424242	0.002196
def Animation_seekAnimations(self, animations, currentTime): """ Function path: Animation.seekAnimations Domain: Animation Method name: seekAnimations Parameters: Required arguments: 'animations' (type: array) -> List of animation ids to seek. 'currentTime' (type: number) -> Set the curren...	[ "def", "Animation_seekAnimations", "(", "self", ",", "animations", ",", "currentTime", ")", ":", "assert", "isinstance", "(", "animations", ",", "(", "list", ",", "tuple", ")", ")", ",", "\"Argument 'animations' must be of type '['list', 'tuple']'. Received type: '%s'\"",...	39.478261	0.039785
def read_pickles (self): """Generate a sequence of objects by opening the path and unpickling items until EOF is reached. """ try: import cPickle as pickle except ImportError: import pickle with self.open (mode='rb') as f: while True:...	[ "def", "read_pickles", "(", "self", ")", ":", "try", ":", "import", "cPickle", "as", "pickle", "except", "ImportError", ":", "import", "pickle", "with", "self", ".", "open", "(", "mode", "=", "'rb'", ")", "as", "f", ":", "while", "True", ":", "try", ...	26.588235	0.012821
def getATR(self): """Return card ATR""" CardConnection.getATR(self) if None == self.hcard: raise CardConnectionException('Card not connected') hresult, reader, state, protocol, atr = SCardStatus(self.hcard) if hresult != 0: raise CardConnectionException( ...	[ "def", "getATR", "(", "self", ")", ":", "CardConnection", ".", "getATR", "(", "self", ")", "if", "None", "==", "self", ".", "hcard", ":", "raise", "CardConnectionException", "(", "'Card not connected'", ")", "hresult", ",", "reader", ",", "state", ",", "pr...	38.090909	0.009324
def blank_lines(logical_line, blank_lines, indent_level, line_number, blank_before, previous_logical, previous_unindented_logical_line, previous_indent_level, lines): r"""Separate top-level function and class definitions with two blank lines. Method definitions i...	[ "def", "blank_lines", "(", "logical_line", ",", "blank_lines", ",", "indent_level", ",", "line_number", ",", "blank_before", ",", "previous_logical", ",", "previous_unindented_logical_line", ",", "previous_indent_level", ",", "lines", ")", ":", "if", "line_number", "<...	49.733333	0.000329
def readDB(self): """Datamodel includes the following files: config.dat, devices.dat """ self.dm = DataModel(directory = tools.getConfigDir()) if (self.first_start): print(pre, "readDB : first start") self.dm.clearAll() self.dm.saveAll() # If ...	[ "def", "readDB", "(", "self", ")", ":", "self", ".", "dm", "=", "DataModel", "(", "directory", "=", "tools", ".", "getConfigDir", "(", ")", ")", "if", "(", "self", ".", "first_start", ")", ":", "print", "(", "pre", ",", "\"readDB : first start\"", ")",...	35.75	0.009091
def stop(self): """ Stops the timer. """ self._lock.acquire() try: # Stop the timer if self._timer != None: self._timer.stop() self._timer = None # Unset started flag self.started = False...	[ "def", "stop", "(", "self", ")", ":", "self", ".", "_lock", ".", "acquire", "(", ")", "try", ":", "# Stop the timer", "if", "self", ".", "_timer", "!=", "None", ":", "self", ".", "_timer", ".", "stop", "(", ")", "self", ".", "_timer", "=", "None", ...	23.733333	0.010811
def get_user_id(remote, email): """Get the Globus identity for a users given email. A Globus ID is a UUID that can uniquely identify a Globus user. See the docs here for v2/api/identities https://docs.globus.org/api/auth/reference/ """ try: url = '{}?usernames={}'.format(GLOBUS_USER_ID_...	[ "def", "get_user_id", "(", "remote", ",", "email", ")", ":", "try", ":", "url", "=", "'{}?usernames={}'", ".", "format", "(", "GLOBUS_USER_ID_URL", ",", "email", ")", "user_id", "=", "get_dict_from_response", "(", "remote", ".", "get", "(", "url", ")", ")"...	46	0.001332
def get_extended_stats(self, data): """ Get more exhaustive statistics for the current user data -- A dictionary with the range of dates you want the stats for {'from': '2010/01/01', 'to': '2010/01/10'} """ return self._call('GET', self._generate_url_path('extended-stats') + '?' + self._urlencode(d...	[ "def", "get_extended_stats", "(", "self", ",", "data", ")", ":", "return", "self", ".", "_call", "(", "'GET'", ",", "self", ".", "_generate_url_path", "(", "'extended-stats'", ")", "+", "'?'", "+", "self", ".", "_urlencode", "(", "data", ")", ")" ]	53.333333	0.012308
def read_xso(src, xsomap): """ Read a single XSO from a binary file-like input `src` containing an XML document. `xsomap` must be a mapping which maps :class:`~.XSO` subclasses to callables. These will be registered at a newly created :class:`.xso.XSOParser` instance which will be used to parse...	[ "def", "read_xso", "(", "src", ",", "xsomap", ")", ":", "xso_parser", "=", "xso", ".", "XSOParser", "(", ")", "for", "class_", ",", "cb", "in", "xsomap", ".", "items", "(", ")", ":", "xso_parser", ".", "add_class", "(", "class_", ",", "cb", ")", "d...	28.774194	0.001085
def scale(self, data, unit): """Scales quantity to obtain dimensionful quantity. Args: data (numpy.array): the quantity that should be scaled. dim (str): the dimension of data as defined in phyvars. Return: (float, str): scaling factor and unit string. ...	[ "def", "scale", "(", "self", ",", "data", ",", "unit", ")", ":", "if", "self", ".", "par", "[", "'switches'", "]", "[", "'dimensional_units'", "]", "or", "not", "conf", ".", "scaling", ".", "dimensional", "or", "unit", "==", "'1'", ":", "return", "da...	40	0.001744
def _write_udf_descs(self, descs, outfp, progress): # type: (PyCdlib._UDFDescriptors, BinaryIO, PyCdlib._Progress) -> None ''' An internal method to write out a UDF Descriptor sequence. Parameters: descs - The UDF Descriptors object to write out. outfp - The output fil...	[ "def", "_write_udf_descs", "(", "self", ",", "descs", ",", "outfp", ",", "progress", ")", ":", "# type: (PyCdlib._UDFDescriptors, BinaryIO, PyCdlib._Progress) -> None", "log_block_size", "=", "self", ".", "pvd", ".", "logical_block_size", "(", ")", "outfp", ".", "seek...	38.348837	0.001774
def multiplied(values): """ Returns the product of all supplied values. One or more values* can be specified. For example, to light a :class:`~gpiozero.PWMLED` as the product (i.e. multiplication) of several potentiometers connected to an :class:`~gpiozero.MCP3008` ADC:: from gpiozero...	[ "def", "multiplied", "(", "", "values", ")", ":", "values", "=", "[", "_normalize", "(", "v", ")", "for", "v", "in", "values", "]", "def", "_product", "(", "it", ")", ":", "p", "=", "1", "for", "n", "in", "it", ":", "p", "=", "n", "return", ...	27.172414	0.002451
def get_servers(self): """ Create the list of Server object inside the Datacenter objects. Build an internal list of VM Objects (pro or smart) as iterator. :return: bool """ json_scheme = self.gen_def_json_scheme('GetServers') json_obj = self.call_method_post(meth...	[ "def", "get_servers", "(", "self", ")", ":", "json_scheme", "=", "self", ".", "gen_def_json_scheme", "(", "'GetServers'", ")", "json_obj", "=", "self", ".", "call_method_post", "(", "method", "=", "'GetServers'", ",", "json_scheme", "=", "json_scheme", ")", "s...	42.833333	0.00163
def treeboost(self, data: ['SASdata', str] = None, assess: str = None, code: str = None, freq: str = None, importance: str = None, input: [str, list, dict] = None, performance: str = None, save:...	[ "def", "treeboost", "(", "self", ",", "data", ":", "[", "'SASdata'", ",", "str", "]", "=", "None", ",", "assess", ":", "str", "=", "None", ",", "code", ":", "str", "=", "None", ",", "freq", ":", "str", "=", "None", ",", "importance", ":", "str", ...	59.685714	0.009892
def mouseMoveEvent(self, ev): """Update line with last point and current coordinates.""" pos = self.transformPos(ev.pos()) # Update coordinates in status bar if image is opened window = self.parent().window() if window.filePath is not None: self.parent().window().lab...	[ "def", "mouseMoveEvent", "(", "self", ",", "ev", ")", ":", "pos", "=", "self", ".", "transformPos", "(", "ev", ".", "pos", "(", ")", ")", "# Update coordinates in status bar if image is opened", "window", "=", "self", ".", "parent", "(", ")", ".", "window", ...	42.428571	0.000877
def get_target_errors(self): """Just get a single error characterization based on the index relative to the target :param i: list index :type i: int :returns: list of base-wise errors :rtype: list of HPA groups """ if self._target_errors: return self._target_errors v = [] for i in...	[ "def", "get_target_errors", "(", "self", ")", ":", "if", "self", ".", "_target_errors", ":", "return", "self", ".", "_target_errors", "v", "=", "[", "]", "for", "i", "in", "range", "(", "len", "(", "self", ".", "_target_hpas", ")", ")", ":", "v", "."...	26.066667	0.009877
def set_application_language(params): """Set the locale and translation for a pywws program. This function reads the language from the configuration file, then calls :func:`set_locale` and :func:`set_translation`. :param params: a :class:`pywws.storage.params` object. :type params: object ""...	[ "def", "set_application_language", "(", "params", ")", ":", "lang", "=", "params", ".", "get", "(", "'config'", ",", "'language'", ",", "None", ")", "if", "lang", ":", "set_locale", "(", "lang", ")", "set_translation", "(", "lang", ")" ]	28.333333	0.002278
def _value(self, obj, cls=None): """The state value (called from the wrapper)""" if obj is not None: return getattr(obj, self.propname) else: return getattr(cls, self.propname)	[ "def", "_value", "(", "self", ",", "obj", ",", "cls", "=", "None", ")", ":", "if", "obj", "is", "not", "None", ":", "return", "getattr", "(", "obj", ",", "self", ".", "propname", ")", "else", ":", "return", "getattr", "(", "cls", ",", "self", "."...	36.5	0.008929
def clear(self, store=True): """Clears (locks) the achievement. :rtype: bool """ result = self._iface.ach_lock(self.name) result and store and self._store() return result	[ "def", "clear", "(", "self", ",", "store", "=", "True", ")", ":", "result", "=", "self", ".", "_iface", ".", "ach_lock", "(", "self", ".", "name", ")", "result", "and", "store", "and", "self", ".", "_store", "(", ")", "return", "result" ]	26.5	0.009132
def is_ip_addr(value): """ Check that the supplied value is an Internet Protocol address, v.4, represented by a dotted-quad string, i.e. '1.2.3.4'. >>> vtor = Validator() >>> vtor.check('ip_addr', '1 ') '1' >>> vtor.check('ip_addr', ' 1.2') '1.2' >>> vtor.check('ip_addr', ' 1.2.3 ')...	[ "def", "is_ip_addr", "(", "value", ")", ":", "if", "not", "isinstance", "(", "value", ",", "string_types", ")", ":", "raise", "VdtTypeError", "(", "value", ")", "value", "=", "value", ".", "strip", "(", ")", "try", ":", "dottedQuadToNum", "(", "value", ...	32.694444	0.000825
def get_fill_char( maf_status ): """ Return the character that should be used to fill between blocks having a given status """ ## assert maf_status not in ( maf.MAF_CONTIG_NESTED_STATUS, maf.MAF_NEW_NESTED_STATUS, ## maf.MAF_MAYBE_NEW_NESTED_STATUS ), \ ## "Ne...	[ "def", "get_fill_char", "(", "maf_status", ")", ":", "## assert maf_status not in ( maf.MAF_CONTIG_NESTED_STATUS, maf.MAF_NEW_NESTED_STATUS, ", "## maf.MAF_MAYBE_NEW_NESTED_STATUS ), \\", "## \"Nested rows do not make sense in a single coverage MAF (or do they?)\"", ...	45.157895	0.019406
def countrate(self,binned=True,range=None,force=False): """Calculate effective stimulus in count/s. Also see :ref:`pysynphot-formula-countrate` and :ref:`pysynphot-formula-effstim`. .. note:: This is the calculation performed when the ETC invokes ``countrate``. ...	[ "def", "countrate", "(", "self", ",", "binned", "=", "True", ",", "range", "=", "None", ",", "force", "=", "False", ")", ":", "if", "self", ".", "_binflux", "is", "None", ":", "self", ".", "initbinflux", "(", ")", "myfluxunits", "=", "self", ".", "...	35.526316	0.010089
def is_numeric_v_string_like(a, b): """ Check if we are comparing a string-like object to a numeric ndarray. NumPy doesn't like to compare such objects, especially numeric arrays and scalar string-likes. Parameters ---------- a : array-like, scalar The first object to check. b ...	[ "def", "is_numeric_v_string_like", "(", "a", ",", "b", ")", ":", "is_a_array", "=", "isinstance", "(", "a", ",", "np", ".", "ndarray", ")", "is_b_array", "=", "isinstance", "(", "b", ",", "np", ".", "ndarray", ")", "is_a_numeric_array", "=", "is_a_array", ...	32.553571	0.000532
def print_featurelist(feature_list): """ Print the feature_list in a human-readable form. Parameters ---------- feature_list : list feature objects """ input_features = sum(map(lambda n: n.get_dimension(), feature_list)) print("## Features (%i)" % input_features) print("```"...	[ "def", "print_featurelist", "(", "feature_list", ")", ":", "input_features", "=", "sum", "(", "map", "(", "lambda", "n", ":", "n", ".", "get_dimension", "(", ")", ",", "feature_list", ")", ")", "print", "(", "\"## Features (%i)\"", "%", "input_features", ")"...	26.533333	0.002427
def loads(data): """Parser entry point. Parses the output of a traceroute execution""" data += "\n_EOS_" # Append EOS token. Helps to match last RE_HOP # Get headers match_dest = RE_HEADER.search(data) dest_name = match_dest.group(1) dest_ip = match_dest.group(2) # The Traceroute is the ro...	[ "def", "loads", "(", "data", ")", ":", "data", "+=", "\"\\n_EOS_\"", "# Append EOS token. Helps to match last RE_HOP", "# Get headers", "match_dest", "=", "RE_HEADER", ".", "search", "(", "data", ")", "dest_name", "=", "match_dest", ".", "group", "(", "1", ")", ...	34.422535	0.001591
def bulkBatchDF(symbols, fields=None, range_='1m', last=10, token='', version=''): '''Optimized batch to fetch as much as possible at once https://iexcloud.io/docs/api/#batch-requests Args: symbols (list); List of tickers to request fields (list); List of fields to request range_ ...	[ "def", "bulkBatchDF", "(", "symbols", ",", "fields", "=", "None", ",", "range_", "=", "'1m'", ",", "last", "=", "10", ",", "token", "=", "''", ",", "version", "=", "''", ")", ":", "dat", "=", "bulkBatch", "(", "symbols", ",", "fields", ",", "range_...	29	0.002225
def _get_serial_number(self): """ Retrieves the FTDI device serial number. :returns: string containing the device serial number """ return usb.util.get_string(self._device.usb_dev, 64, self._device.usb_dev.iSerialNumber)	[ "def", "_get_serial_number", "(", "self", ")", ":", "return", "usb", ".", "util", ".", "get_string", "(", "self", ".", "_device", ".", "usb_dev", ",", "64", ",", "self", ".", "_device", ".", "usb_dev", ".", "iSerialNumber", ")" ]	36.428571	0.011494
def get_cache(self, decorated_function, args, kwargs): """ :meth:`WCacheStorage.get_cache` method implementation """ self.__check(decorated_function, args, **kwargs) if decorated_function in self._storage: for i in self._storage[decorated_function]: if i['instance']() == args[0]: result = i['res...	[ "def", "get_cache", "(", "self", ",", "decorated_function", ",", "", "args", ",", "", "", "kwargs", ")", ":", "self", ".", "__check", "(", "decorated_function", ",", "", "args", ",", "", "", "kwargs", ")", "if", "decorated_function", "in", "self", ...	31.263158	0.029412
def typed_subpart_iterator(msg, maintype='text', subtype=None): """Iterate over the subparts with a given MIME type. Use `maintype' as the main MIME type to match against; this defaults to "text". Optional `subtype' is the MIME subtype to match against; if omitted, only the main type is matched. "...	[ "def", "typed_subpart_iterator", "(", "msg", ",", "maintype", "=", "'text'", ",", "subtype", "=", "None", ")", ":", "for", "subpart", "in", "msg", ".", "walk", "(", ")", ":", "if", "subpart", ".", "get_content_maintype", "(", ")", "==", "maintype", ":", ...	45.818182	0.001946
def compute_ihh_gaps(pos, map_pos, gap_scale, max_gap, is_accessible): """Compute spacing between variants for integrating haplotype homozygosity. Parameters ---------- pos : array_like, int, shape (n_variants,) Variant positions (physical distance). map_pos : array_like, float, shape (...	[ "def", "compute_ihh_gaps", "(", "pos", ",", "map_pos", ",", "gap_scale", ",", "max_gap", ",", "is_accessible", ")", ":", "# check inputs", "if", "map_pos", "is", "None", ":", "# integrate over physical distance", "map_pos", "=", "pos", "else", ":", "map_pos", "=...	31.411765	0.000454
def photparse(tab): """ Parse through a photometry table to group by source_id Parameters ---------- tab: list SQL query dictionary list from running query_dict.execute() Returns ------- newtab: list Dictionary list after parsing to group together sources """ # Ch...	[ "def", "photparse", "(", "tab", ")", ":", "# Check that source_id column is present", "if", "'source_id'", "not", "in", "tab", "[", "0", "]", ".", "keys", "(", ")", ":", "raise", "KeyError", "(", "'phot=TRUE requires the source_id columb be included'", ")", "# Loop ...	25.171429	0.001093
def request_instance(vm_, conn=None, call=None): ''' Request an instance to be built ''' if call == 'function': # Technically this function may be called other ways too, but it # definitely cannot be called with --function. raise SaltCloudSystemExit( 'The request_inst...	[ "def", "request_instance", "(", "vm_", ",", "conn", "=", "None", ",", "call", "=", "None", ")", ":", "if", "call", "==", "'function'", ":", "# Technically this function may be called other ways too, but it", "# definitely cannot be called with --function.", "raise", "Salt...	40.725	0.0006
def determine_struct_tree_subtype(self, data_type, obj): """ Searches through the JSON-object-compatible dict using the data type definition to determine which of the enumerated subtypes `obj` is. """ if '.tag' not in obj: raise bv.ValidationError("missing '.tag' key"...	[ "def", "determine_struct_tree_subtype", "(", "self", ",", "data_type", ",", "obj", ")", ":", "if", "'.tag'", "not", "in", "obj", ":", "raise", "bv", ".", "ValidationError", "(", "\"missing '.tag' key\"", ")", "if", "not", "isinstance", "(", "obj", "[", "'.ta...	49.705882	0.002322
def oq_server_context_processor(request): """ A custom context processor which allows injection of additional context variables. """ context = {} context['oq_engine_server_url'] = ('//' + request.META.get('HTTP_HOST', ...	[ "def", "oq_server_context_processor", "(", "request", ")", ":", "context", "=", "{", "}", "context", "[", "'oq_engine_server_url'", "]", "=", "(", "'//'", "+", "request", ".", "META", ".", "get", "(", "'HTTP_HOST'", ",", "'localhost:8800'", ")", ")", "# this...	36.25	0.001681
def phi( n ): """Return the Euler totient function of n.""" assert isinstance( n, integer_types ) if n < 3: return 1 result = 1 ff = factorization( n ) for f in ff: e = f[1] if e > 1: result = result * f[0] ** (e-1) * ( f[0] - 1 ) else: result = result * ( f[0] - 1 ) return resu...	[ "def", "phi", "(", "n", ")", ":", "assert", "isinstance", "(", "n", ",", "integer_types", ")", "if", "n", "<", "3", ":", "return", "1", "result", "=", "1", "ff", "=", "factorization", "(", "n", ")", "for", "f", "in", "ff", ":", "e", "=", "f", ...	19.1875	0.065217
def determine_file_extension_based_on_format(format_specifier): """ returns file extension string """ if format_specifier == FMT_INI: return 'ini' if format_specifier == FMT_DELIMITED: return '' if format_specifier == FMT_XML: return 'xml' if format_specifier == FMT_JSON: return 'json' if format_specifier...	[ "def", "determine_file_extension_based_on_format", "(", "format_specifier", ")", ":", "if", "format_specifier", "==", "FMT_INI", ":", "return", "'ini'", "if", "format_specifier", "==", "FMT_DELIMITED", ":", "return", "''", "if", "format_specifier", "==", "FMT_XML", ":...	31.615385	0.030733
def modify_node(hostname, username, password, name, connection_limit=None, description=None, dynamic_ratio=None, logging=None, monitor=None, rate_limit=None, ratio=None, session=None, ...	[ "def", "modify_node", "(", "hostname", ",", "username", ",", "password", ",", "name", ",", "connection_limit", "=", "None", ",", "description", "=", "None", ",", "dynamic_ratio", "=", "None", ",", "logging", "=", "None", ",", "monitor", "=", "None", ",", ...	32.40625	0.00156
def conv_Pb_bound(R,dfree,Ck,SNRdB,hard_soft,M=2): """ Coded bit error probabilty Convolution coding bit error probability upper bound according to Ziemer & Peterson 7-16, p. 507 Mark Wickert November 2014 Parameters ---------- R: Code rate dfree: Free distance of ...	[ "def", "conv_Pb_bound", "(", "R", ",", "dfree", ",", "Ck", ",", "SNRdB", ",", "hard_soft", ",", "M", "=", "2", ")", ":", "Pb", "=", "np", ".", "zeros_like", "(", "SNRdB", ")", "SNR", "=", "10.", "**", "(", "SNRdB", "/", "10.", ")", "for", "n", ...	34.758621	0.011095
def get_instance(self, payload): """ Build an instance of MonthlyInstance :param dict payload: Payload response from the API :returns: twilio.rest.api.v2010.account.usage.record.monthly.MonthlyInstance :rtype: twilio.rest.api.v2010.account.usage.record.monthly.MonthlyInstance ...	[ "def", "get_instance", "(", "self", ",", "payload", ")", ":", "return", "MonthlyInstance", "(", "self", ".", "_version", ",", "payload", ",", "account_sid", "=", "self", ".", "_solution", "[", "'account_sid'", "]", ",", ")" ]	42.1	0.011628
def assert_order_met(self, finalize=False): """assert that calls have been made in the right order.""" error = None actual_call_len = len(self._actual_calls) expected_call_len = len(self._call_order) if actual_call_len == 0: error = "Not enough calls were made" ...	[ "def", "assert_order_met", "(", "self", ",", "finalize", "=", "False", ")", ":", "error", "=", "None", "actual_call_len", "=", "len", "(", "self", ".", "_actual_calls", ")", "expected_call_len", "=", "len", "(", "self", ".", "_call_order", ")", "if", "actu...	39.02439	0.001829
def __read_config(self): """读取 config""" self.config = helpers.file2dict(self.config_path) self.global_config = helpers.file2dict(self.global_config_path) self.config.update(self.global_config)	[ "def", "__read_config", "(", "self", ")", ":", "self", ".", "config", "=", "helpers", ".", "file2dict", "(", "self", ".", "config_path", ")", "self", ".", "global_config", "=", "helpers", ".", "file2dict", "(", "self", ".", "global_config_path", ")", "self...	44.2	0.008889
def _make_entity_from_id(entity_cls, entity_obj_or_id, server_config): """Given an entity object or an ID, return an entity object. If the value passed in is an object that is a subclass of :class:`Entity`, return that value. Otherwise, create an object of the type that ``field`` references, give that ...	[ "def", "_make_entity_from_id", "(", "entity_cls", ",", "entity_obj_or_id", ",", "server_config", ")", ":", "if", "isinstance", "(", "entity_obj_or_id", ",", "entity_cls", ")", ":", "return", "entity_obj_or_id", "return", "entity_cls", "(", "server_config", ",", "id"...	41.833333	0.001299
def _xpathDict(xml, xpath, cls, parent, **kwargs): """ Returns a default Dict given certain information :param xml: An xml tree :type xml: etree :param xpath: XPath to find children :type xpath: str :param cls: Class identifying children :type cls: inventory.Resource :param parent: Pare...	[ "def", "_xpathDict", "(", "xml", ",", "xpath", ",", "cls", ",", "parent", ",", "", "", "kwargs", ")", ":", "children", "=", "[", "]", "for", "child", "in", "xml", ".", "xpath", "(", "xpath", ",", "namespaces", "=", "XPATH_NAMESPACES", ")", ":", "...	30.954545	0.001425
def get_requirements(filename='requirements.txt'): """ Get the contents of a file listing the requirements. :param filename: path to a requirements file :type filename: str :returns: the list of requirements :return type: list """ with open(filename) as f: return [ ...	[ "def", "get_requirements", "(", "filename", "=", "'requirements.txt'", ")", ":", "with", "open", "(", "filename", ")", "as", "f", ":", "return", "[", "line", ".", "rstrip", "(", ")", ".", "split", "(", "'#'", ")", "[", "0", "]", "for", "line", "in", ...	26.3125	0.002294
def get_mean_and_stddevs(self, sites, rup, dists, imt, stddev_types): """ See :meth:`superclass method <.base.GroundShakingIntensityModel.get_mean_and_stddevs>` for spec of input and result values. """ # extracting dictionary of coefficients C = self.COEFFS[imt] ...	[ "def", "get_mean_and_stddevs", "(", "self", ",", "sites", ",", "rup", ",", "dists", ",", "imt", ",", "stddev_types", ")", ":", "# extracting dictionary of coefficients", "C", "=", "self", ".", "COEFFS", "[", "imt", "]", "mag", "=", "self", ".", "_convert_mag...	36.633333	0.001773
def add(self, sentence_text, kwargs): ''' Parse a text string and add it to this doc ''' sent = MeCabSent.parse(sentence_text, kwargs) self.sents.append(sent) return sent	[ "def", "add", "(", "self", ",", "sentence_text", ",", "", "", "kwargs", ")", ":", "sent", "=", "MeCabSent", ".", "parse", "(", "sentence_text", ",", "", "", "kwargs", ")", "self", ".", "sents", ".", "append", "(", "sent", ")", "return", "sent" ]	40.4	0.009709
def git_info(): """ A hash of Git data that can be used to display more information to users. Example: "git": { "head": { "id": "5e837ce92220be64821128a70f6093f836dd2c05", "author_name": "Wil Gieseler", "author_email": "wil@example.com", ...	[ "def", "git_info", "(", ")", ":", "try", ":", "branch", "=", "(", "os", ".", "environ", ".", "get", "(", "'APPVEYOR_REPO_BRANCH'", ")", "or", "os", ".", "environ", ".", "get", "(", "'BUILDKITE_BRANCH'", ")", "or", "os", ".", "environ", ".", "get", "(...	38.347222	0.000353
def urlopen(url, session, referrer=None, max_content_bytes=None, timeout=ConnectionTimeoutSecs, raise_for_status=True, stream=False, data=None, useragent=UserAgent): """Open an URL and return the response object.""" out.debug(u'Open URL %s' % url) headers = {'User-Agent': useragent} ...	[ "def", "urlopen", "(", "url", ",", "session", ",", "referrer", "=", "None", ",", "max_content_bytes", "=", "None", ",", "timeout", "=", "ConnectionTimeoutSecs", ",", "raise_for_status", "=", "True", ",", "stream", "=", "False", ",", "data", "=", "None", ",...	35.675676	0.000737
def query_recent(num=8, **kwargs): ''' query recent posts. ''' order_by_create = kwargs.get('order_by_create', False) kind = kwargs.get('kind', None) if order_by_create: if kind: recent_recs = TabPost.select().where( (TabPos...	[ "def", "query_recent", "(", "num", "=", "8", ",", "", "", "kwargs", ")", ":", "order_by_create", "=", "kwargs", ".", "get", "(", "'order_by_create'", ",", "False", ")", "kind", "=", "kwargs", ".", "get", "(", "'kind'", ",", "None", ")", "if", "orde...	34.727273	0.001698
def label_suspicious(self, reason): """Add suspicion reason and set the suspicious flag.""" self.suspicion_reasons.append(reason) self.is_suspect = True	[ "def", "label_suspicious", "(", "self", ",", "reason", ")", ":", "self", ".", "suspicion_reasons", ".", "append", "(", "reason", ")", "self", ".", "is_suspect", "=", "True" ]	43.25	0.011364
def merge_tags(left, right, factory=Tags): """ Merge two sets of tags into a new troposphere object Args: left (Union[dict, troposphere.Tags]): dictionary or Tags object to be merged with lower priority right (Union[dict, troposphere.Tags]): dictionary or Tags object to be ...	[ "def", "merge_tags", "(", "left", ",", "right", ",", "factory", "=", "Tags", ")", ":", "if", "isinstance", "(", "left", ",", "Mapping", ")", ":", "tags", "=", "dict", "(", "left", ")", "elif", "hasattr", "(", "left", ",", "'tags'", ")", ":", "tags"...	29.892857	0.001157
def stop_refresh(self): """Stop redrawing the canvas at the previously set timed interval. """ self.logger.debug("stopping timed refresh") self.rf_flags['done'] = True self.rf_timer.clear()	[ "def", "stop_refresh", "(", "self", ")", ":", "self", ".", "logger", ".", "debug", "(", "\"stopping timed refresh\"", ")", "self", ".", "rf_flags", "[", "'done'", "]", "=", "True", "self", ".", "rf_timer", ".", "clear", "(", ")" ]	37.333333	0.008734
def factory(fileobject, jfs, parentpath): # fileobject from lxml.objectify 'Class method to get the correct file class instatiated' if hasattr(fileobject, 'currentRevision'): # a normal file return JFSFile(fileobject, jfs, parentpath) elif str(fileobject.latestRevision.state) == Prot...	[ "def", "factory", "(", "fileobject", ",", "jfs", ",", "parentpath", ")", ":", "# fileobject from lxml.objectify", "if", "hasattr", "(", "fileobject", ",", "'currentRevision'", ")", ":", "# a normal file", "return", "JFSFile", "(", "fileobject", ",", "jfs", ",", ...	68.3	0.008671
def ObjectEnum(ctx): """Object Enumeration. Should export the whole list from the game for the best accuracy. """ return Enum( ctx, villager_male=83, villager_female=293, scout_cavalry=448, eagle_warrior=751, king=434, flare=332, relic=285...	[ "def", "ObjectEnum", "(", "ctx", ")", ":", "return", "Enum", "(", "ctx", ",", "villager_male", "=", "83", ",", "villager_female", "=", "293", ",", "scout_cavalry", "=", "448", ",", "eagle_warrior", "=", "751", ",", "king", "=", "434", ",", "flare", "="...	21.202703	0.000609
def records( self ): """ Returns the record list that ist linked with this combo box. :return [<orb.Table>, ..] """ records = [] for i in range(self.count()): record = self.recordAt(i) if record: records.appen...	[ "def", "records", "(", "self", ")", ":", "records", "=", "[", "]", "for", "i", "in", "range", "(", "self", ".", "count", "(", ")", ")", ":", "record", "=", "self", ".", "recordAt", "(", "i", ")", "if", "record", ":", "records", ".", "append", "...	28.5	0.014164
def _validate_minlength(self, min_length, field, value): """ {'type': 'integer'} """ if isinstance(value, Iterable) and len(value) < min_length: self._error(field, errors.MIN_LENGTH, len(value))	[ "def", "_validate_minlength", "(", "self", ",", "min_length", ",", "field", ",", "value", ")", ":", "if", "isinstance", "(", "value", ",", "Iterable", ")", "and", "len", "(", "value", ")", "<", "min_length", ":", "self", ".", "_error", "(", "field", ",...	54.75	0.009009
def _publish_internal(self, push_messages): """Send push notifications The server will validate any type of syntax errors and the client will raise the proper exceptions for the user to handle. Each notification is of the form: { 'to': 'ExponentPushToken[xxx]', ...	[ "def", "_publish_internal", "(", "self", ",", "push_messages", ")", ":", "# Delayed import because this file is immediately read on install, and", "# the requests library may not be installed yet.", "import", "requests", "response", "=", "requests", ".", "post", "(", "self", "....	37.783133	0.000622
def get_tree(self, *page_numbers): """ Return lxml.etree.ElementTree for entire document, or page numbers given if any. """ cache_key = "_".join(map(str, _flatten(page_numbers))) tree = self._parse_tree_cacher.get(cache_key) if tree is None: ...	[ "def", "get_tree", "(", "self", ",", "*", "page_numbers", ")", ":", "cache_key", "=", "\"_\"", ".", "join", "(", "map", "(", "str", ",", "_flatten", "(", "page_numbers", ")", ")", ")", "tree", "=", "self", ".", "_parse_tree_cacher", ".", "get", "(", ...	44.673913	0.001429
def get_insert_idx(pos_dict, name): "Return the position to insert a given function doc in a notebook." keys,i = list(pos_dict.keys()),0 while i < len(keys) and str.lower(keys[i]) < str.lower(name): i+=1 if i == len(keys): return -1 else: return pos_dict[keys[i]]	[ "def", "get_insert_idx", "(", "pos_dict", ",", "name", ")", ":", "keys", ",", "i", "=", "list", "(", "pos_dict", ".", "keys", "(", ")", ")", ",", "0", "while", "i", "<", "len", "(", "keys", ")", "and", "str", ".", "lower", "(", "keys", "[", "i"...	48.5	0.027027
def generate(self, title=None, version=None, base_path=None, info=None, swagger=None, **kwargs): """Generate a Swagger 2.0 documentation. Keyword arguments may be used to provide additional information to build methods as such ignores. :param title: The name present...	[ "def", "generate", "(", "self", ",", "title", "=", "None", ",", "version", "=", "None", ",", "base_path", "=", "None", ",", "info", "=", "None", ",", "swagger", "=", "None", ",", "", "", "kwargs", ")", ":", "title", "=", "title", "or", "self", ...	37.95	0.00214
def exact_cftime_datetime_difference(a, b): """Exact computation of b - a Assumes: a = a_0 + a_m b = b_0 + b_m Here a_0, and b_0 represent the input dates rounded down to the nearest second, and a_m, and b_m represent the remaining microseconds associated with date a and date ...	[ "def", "exact_cftime_datetime_difference", "(", "a", ",", "b", ")", ":", "seconds", "=", "b", ".", "replace", "(", "microsecond", "=", "0", ")", "-", "a", ".", "replace", "(", "microsecond", "=", "0", ")", "seconds", "=", "int", "(", "round", "(", "s...	29.921053	0.000852
def mkrngs(self): """ Transform boolean arrays into list of limit pairs. Gets Time limits of signal/background boolean arrays and stores them as sigrng and bkgrng arrays. These arrays can be saved by 'save_ranges' in the analyse object. """ bbool = bool_2_indices...	[ "def", "mkrngs", "(", "self", ")", ":", "bbool", "=", "bool_2_indices", "(", "self", ".", "bkg", ")", "if", "bbool", "is", "not", "None", ":", "self", ".", "bkgrng", "=", "self", ".", "Time", "[", "bbool", "]", "else", ":", "self", ".", "bkgrng", ...	31.911765	0.001789
def from_array(self, coeffs, normalization='4pi', csphase=1, lmax=None, copy=True): """ Initialize the class with spherical harmonic coefficients from an input array. Usage ----- x = SHCoeffs.from_array(array, [normalization, csphase, lmax, copy]) ...	[ "def", "from_array", "(", "self", ",", "coeffs", ",", "normalization", "=", "'4pi'", ",", "csphase", "=", "1", ",", "lmax", "=", "None", ",", "copy", "=", "True", ")", ":", "if", "_np", ".", "iscomplexobj", "(", "coeffs", ")", ":", "kind", "=", "'c...	39.413333	0.00099
def lsr_pairwise(n_items, data, alpha=0.0, initial_params=None): """Compute the LSR estimate of model parameters. This function implements the Luce Spectral Ranking inference algorithm [MG15]_ for pairwise-comparison data (see :ref:`data-pairwise`). The argument ``initial_params`` can be used to itera...	[ "def", "lsr_pairwise", "(", "n_items", ",", "data", ",", "alpha", "=", "0.0", ",", "initial_params", "=", "None", ")", ":", "weights", ",", "chain", "=", "_init_lsr", "(", "n_items", ",", "alpha", ",", "initial_params", ")", "for", "winner", ",", "loser"...	37.916667	0.000714
def print_lh(self, joint=True): """ Print the total likelihood of the tree given the constrained leaves Parameters ---------- joint : bool If true, print joint LH, else print marginal LH """ try: u_lh = self.tree.unconstrained_sequence_...	[ "def", "print_lh", "(", "self", ",", "joint", "=", "True", ")", ":", "try", ":", "u_lh", "=", "self", ".", "tree", ".", "unconstrained_sequence_LH", "if", "joint", ":", "s_lh", "=", "self", ".", "tree", ".", "sequence_joint_LH", "t_lh", "=", "self", "....	37.1	0.010508
def unit_defs_from_sheet(sheet, column_names): """A generator that parses a worksheet containing UNECE code definitions. Args: sheet: An xldr.sheet object representing a UNECE code worksheet. column_names: A list/tuple with the expected column names corresponding to the unit name, code an...	[ "def", "unit_defs_from_sheet", "(", "sheet", ",", "column_names", ")", ":", "seen", "=", "set", "(", ")", "try", ":", "col_indices", "=", "{", "}", "rows", "=", "sheet", ".", "get_rows", "(", ")", "# Find the indices for the columns we care about.", "for", "id...	36.351351	0.010862
def StartExecServer(): """Opens a socket in /tmp, execs data from it and writes results back.""" sockdir = '/tmp/pyringe_%s' % os.getpid() if not os.path.isdir(sockdir): os.mkdir(sockdir) socket_path = ('%s/%s.execsock' % (sockdir, threading.current_thread().ident)) if os.path.exists(soc...	[ "def", "StartExecServer", "(", ")", ":", "sockdir", "=", "'/tmp/pyringe_%s'", "%", "os", ".", "getpid", "(", ")", "if", "not", "os", ".", "path", ".", "isdir", "(", "sockdir", ")", ":", "os", ".", "mkdir", "(", "sockdir", ")", "socket_path", "=", "("...	31.317073	0.018882
def from_dict(input_dict): """ Instantiate an object of a derived class using the information in input_dict (built by the to_dict method of the derived class). More specifically, after reading the derived class from input_dict, it calls the method _build_from_input_dict of the de...	[ "def", "from_dict", "(", "input_dict", ")", ":", "import", "copy", "input_dict", "=", "copy", ".", "deepcopy", "(", "input_dict", ")", "link_class", "=", "input_dict", ".", "pop", "(", "'class'", ")", "import", "GPy", "link_class", "=", "eval", "(", "link_...	43.842105	0.00235
def get_infobox(ptree, boxterm="box"): """ Returns parse tree template with title containing <boxterm> as dict: <box> = {<name>: <value>, ...} If simple transform fails, attempts more general assembly: <box> = {'boxes': [{<title>: <parts>}, ...], 'count': <len(boxes)>} ...	[ "def", "get_infobox", "(", "ptree", ",", "boxterm", "=", "\"box\"", ")", ":", "boxes", "=", "[", "]", "for", "item", "in", "lxml", ".", "etree", ".", "fromstring", "(", "ptree", ")", ".", "xpath", "(", "\"//template\"", ")", ":", "title", "=", "item"...	26.814815	0.001333
def dumps_list(l, *, escape=True, token='%\n', mapper=None, as_content=True): r"""Try to generate a LaTeX string of a list that can contain anything. Args ---- l : list A list of objects to be converted into a single string. escape : bool Whether to escape special LaTeX characters i...	[ "def", "dumps_list", "(", "l", ",", "*", ",", "escape", "=", "True", ",", "token", "=", "'%\\n'", ",", "mapper", "=", "None", ",", "as_content", "=", "True", ")", ":", "strings", "=", "(", "_latex_item_to_string", "(", "i", ",", "escape", "=", "escap...	30.862745	0.001232
def add_file(self, name="", hashalg="", hash="", comClasses=None, typelibs=None, comInterfaceProxyStubs=None, windowClasses=None): """ Shortcut for manifest.files.append """ self.files.append(File(name, hashalg, hash, comClasses, typelibs, c...	[ "def", "add_file", "(", "self", ",", "name", "=", "\"\"", ",", "hashalg", "=", "\"\"", ",", "hash", "=", "\"\"", ",", "comClasses", "=", "None", ",", "typelibs", "=", "None", ",", "comInterfaceProxyStubs", "=", "None", ",", "windowClasses", "=", "None", ...	58.833333	0.019553
def map_crt_to_pol(aryXCrds, aryYrds): """Remap coordinates from cartesian to polar Parameters ---------- aryXCrds : 1D numpy array Array with x coordinate values. aryYrds : 1D numpy array Array with y coordinate values. Returns ------- aryTht : 1D numpy array A...	[ "def", "map_crt_to_pol", "(", "aryXCrds", ",", "aryYrds", ")", ":", "aryRad", "=", "np", ".", "sqrt", "(", "aryXCrds", "", "2", "+", "aryYrds", "", "2", ")", "aryTht", "=", "np", ".", "arctan2", "(", "aryYrds", ",", "aryXCrds", ")", "return", "ar...	22.772727	0.001916
def conv1d_block(inputs, filters, dilation_rates_and_kernel_sizes, kwargs): """A block of standard 1d convolutions.""" return conv_block_internal(conv1d, inputs, filters, dilation_rates_and_kernel_sizes, kwargs)	[ "def", "conv1d_block", "(", "inputs", ",", "filters", ",", "dilation_rates_and_kernel_sizes", ",", "", "", "kwargs", ")", ":", "return", "conv_block_internal", "(", "conv1d", ",", "inputs", ",", "filters", ",", "dilation_rates_and_kernel_sizes", ",", "", "", ...	61.25	0.012097
def get_message_plain_text(msg: Message): """ Converts an HTML message to plain text. :param msg: A :class:`~flask_mail.Message` :return: The plain text message. """ if msg.body: return msg.body if BeautifulSoup is None or not msg.html: return msg.html plain_text = '\n...	[ "def", "get_message_plain_text", "(", "msg", ":", "Message", ")", ":", "if", "msg", ".", "body", ":", "return", "msg", ".", "body", "if", "BeautifulSoup", "is", "None", "or", "not", "msg", ".", "html", ":", "return", "msg", ".", "html", "plain_text", "...	29.375	0.002062
def list(self, filter_guid=None, filter_ids=None, detailed=None, page=None): """ This API endpoint returns a paginated list of the plugins associated with your New Relic account. Plugins can be filtered by their name or by a list of IDs. :type filter_guid: str :param fi...	[ "def", "list", "(", "self", ",", "filter_guid", "=", "None", ",", "filter_ids", "=", "None", ",", "detailed", "=", "None", ",", "page", "=", "None", ")", ":", "filters", "=", "[", "'filter[guid]={0}'", ".", "format", "(", "filter_guid", ")", "if", "fil...	38.172043	0.001373
def get_dir(path_name, *, greedy=False, override=None, identity=None): """ Gets the directory path of the given path name. If the argument 'greedy' is specified as True, then if the path name represents a directory itself, the function will return the whole path """ if identity is None: ...	[ "def", "get_dir", "(", "path_name", ",", "*", ",", "greedy", "=", "False", ",", "override", "=", "None", ",", "identity", "=", "None", ")", ":", "if", "identity", "is", "None", ":", "identity", "=", "identify", "(", "path_name", ",", "override", "=", ...	34.333333	0.00189
def parse_http_accept_header(header): """ Return a list of content types listed in the HTTP Accept header ordered by quality. :param header: A string describing the contents of the HTTP Accept header. """ components = [item.strip() for item in header.split(',')] l = [] for component in...	[ "def", "parse_http_accept_header", "(", "header", ")", ":", "components", "=", "[", "item", ".", "strip", "(", ")", "for", "item", "in", "header", ".", "split", "(", "','", ")", "]", "l", "=", "[", "]", "for", "component", "in", "components", ":", "i...	25.46875	0.009456
def _encode_decode_decorator(func): """decorator for encoding and decoding geoms""" def wrapper(args): """error catching""" try: processed_geom = func(args) return processed_geom except ImportError as err: raise ImportError('The Python package `shape...	[ "def", "_encode_decode_decorator", "(", "func", ")", ":", "def", "wrapper", "(", "", "args", ")", ":", "\"\"\"error catching\"\"\"", "try", ":", "processed_geom", "=", "func", "(", "", "args", ")", "return", "processed_geom", "except", "ImportError", "as", "...	39.166667	0.002079
def _number_shapes_ancestors(self, topoTypeA, topoTypeB, topologicalEntity): '''returns the number of shape ancestors If you want to know how many edges a faces has: _number_shapes_ancestors(self, TopAbs_EDGE, TopAbs_FACE, edg) will return the number of edges a faces has @pa...	[ "def", "_number_shapes_ancestors", "(", "self", ",", "topoTypeA", ",", "topoTypeB", ",", "topologicalEntity", ")", ":", "topo_set", "=", "set", "(", ")", "_map", "=", "TopTools_IndexedDataMapOfShapeListOfShape", "(", ")", "topexp_MapShapesAndAncestors", "(", "self", ...	45.1	0.002172
def get_trans_mat(r_axis, angle, normal=False, trans_cry=np.eye(3), lat_type='c', ratio=None, surface=None, max_search=20, quick_gen=False): """ Find the two transformation matrix for each grain from given rotation axis, GB plane, rotation angle and corresponding ratio (see...	[ "def", "get_trans_mat", "(", "r_axis", ",", "angle", ",", "normal", "=", "False", ",", "trans_cry", "=", "np", ".", "eye", "(", "3", ")", ",", "lat_type", "=", "'c'", ",", "ratio", "=", "None", ",", "surface", "=", "None", ",", "max_search", "=", "...	51.854875	0.002446
def _process_pathway(self, row): """ Process row of CTD data from CTD_genes_pathways.tsv.gz and generate triples Args: :param row (list): row of CTD data Returns: :return None """ model = Model(self.graph) self._check_list_len(row, ...	[ "def", "_process_pathway", "(", "self", ",", "row", ")", ":", "model", "=", "Model", "(", "self", ".", "graph", ")", "self", ".", "_check_list_len", "(", "row", ",", "4", ")", "(", "gene_symbol", ",", "gene_id", ",", "pathway_name", ",", "pathway_id", ...	33.897436	0.001471
def _GetAction(self, action, text): """Parse the well known actions for easy reading. Args: action (str): the function or action called by the agent. text (str): mac Wifi log text. Returns: str: a formatted string representing the known (or common) action. If the action is no...	[ "def", "_GetAction", "(", "self", ",", "action", ",", "text", ")", ":", "# TODO: replace \"x in y\" checks by startswith if possible.", "if", "'airportdProcessDLILEvent'", "in", "action", ":", "interface", "=", "text", ".", "split", "(", ")", "[", "0", "]", "retur...	31.47619	0.008804
def _yarn_cluster_metrics(self, rm_address, instance, addl_tags): """ Get metrics related to YARN cluster """ metrics_json = self._rest_request_to_json(rm_address, instance, YARN_CLUSTER_METRICS_PATH, addl_tags) if metrics_json: yarn_metrics = metrics_json[YARN_CLUS...	[ "def", "_yarn_cluster_metrics", "(", "self", ",", "rm_address", ",", "instance", ",", "addl_tags", ")", ":", "metrics_json", "=", "self", ".", "_rest_request_to_json", "(", "rm_address", ",", "instance", ",", "YARN_CLUSTER_METRICS_PATH", ",", "addl_tags", ")", "if...	38.916667	0.008368
def parse(cls, trust_root): """ This method creates a C{L{TrustRoot}} instance from the given input, if possible. @param trust_root: This is the trust root to parse into a C{L{TrustRoot}} object. @type trust_root: C{str} @return: A C{L{TrustRoot}} instance if...	[ "def", "parse", "(", "cls", ",", "trust_root", ")", ":", "url_parts", "=", "_parseURL", "(", "trust_root", ")", "if", "url_parts", "is", "None", ":", "return", "None", "proto", ",", "host", ",", "port", ",", "path", "=", "url_parts", "# check for valid pro...	26.098039	0.001448
def get_dict(self, exclude_keys=None, include_keys=None): """ return dictionary of keys and values corresponding to this model's data - if include_keys is null the function will return all keys :param exclude_keys: (optional) is a list of columns from model that should not be re...	[ "def", "get_dict", "(", "self", ",", "exclude_keys", "=", "None", ",", "include_keys", "=", "None", ")", ":", "d", "=", "{", "}", "exclude_keys_list", "=", "exclude_keys", "or", "[", "]", "include_keys_list", "=", "include_keys", "or", "[", "]", "for", "...	39.85	0.002451
def to_n_ref(self, fill=0, dtype='i1'): """Transform each genotype call into the number of reference alleles. Parameters ---------- fill : int, optional Use this value to represent missing calls. dtype : dtype, optional Output dtype. Retu...	[ "def", "to_n_ref", "(", "self", ",", "fill", "=", "0", ",", "dtype", "=", "'i1'", ")", ":", "# count number of alternate alleles", "out", "=", "np", ".", "empty", "(", "self", ".", "shape", "[", ":", "-", "1", "]", ",", "dtype", "=", "dtype", ")", ...	27.316667	0.001178
def Seq(sequence, annotations=None, block_length=10, blocks_per_line=6, style=DEFAULT_STYLE): """ Pretty-printed sequence object that's displayed nicely in the IPython Notebook. :arg style: Custom CSS as a `format string`, where a selector for the top-level ``<pre>`` element is substitu...	[ "def", "Seq", "(", "sequence", ",", "annotations", "=", "None", ",", "block_length", "=", "10", ",", "blocks_per_line", "=", "6", ",", "style", "=", "DEFAULT_STYLE", ")", ":", "seq_id", "=", "'monoseq-'", "+", "binascii", ".", "hexlify", "(", "os", ".", ...	41.52	0.000942
def _filter_stmts(self, stmts, frame, offset): """Filter the given list of statements to remove ignorable statements. If self is not a frame itself and the name is found in the inner frame locals, statements will be filtered to remove ignorable statements according to self's location. ...	[ "def", "_filter_stmts", "(", "self", ",", "stmts", ",", "frame", ",", "offset", ")", ":", "# if offset == -1, my actual frame is not the inner frame but its parent", "#", "# class A(B): pass", "#", "# we need this to resolve B correctly", "if", "offset", "==", "-", "1", "...	40.17931	0.001508
def eps_logo( matrix, base_width, height, colors=DNA_DEFAULT_COLORS ): """ Return an EPS document containing a sequence logo for matrix where each bases is shown as a column of `base_width` points and the total logo height is `height` points. If `colors` is provided it is a mapping from characters t...	[ "def", "eps_logo", "(", "matrix", ",", "base_width", ",", "height", ",", "colors", "=", "DNA_DEFAULT_COLORS", ")", ":", "alphabet", "=", "matrix", ".", "sorted_alphabet", "rval", "=", "StringIO", "(", ")", "# Read header ans substitute in width / height", "header", ...	46.457143	0.033133
def install(self, release_id, upgrade=False): """Install target packages into a virtual environment. If the virtual environment for the given release ID does not exist on the remote system, it will be created. The virtual environment will be created according to the standard Tunic ...	[ "def", "install", "(", "self", ",", "release_id", ",", "upgrade", "=", "False", ")", ":", "release_path", "=", "os", ".", "path", ".", "join", "(", "self", ".", "_releases", ",", "release_id", ")", "if", "not", "self", ".", "_runner", ".", "exists", ...	44.947368	0.001146
def finder(package): """ Return a resource finder for a package. :param package: The name of the package. :return: A :class:`ResourceFinder` instance for the package. """ if package in _finder_cache: result = _finder_cache[package] else: if package not in sys.modules: ...	[ "def", "finder", "(", "package", ")", ":", "if", "package", "in", "_finder_cache", ":", "result", "=", "_finder_cache", "[", "package", "]", "else", ":", "if", "package", "not", "in", "sys", ".", "modules", ":", "__import__", "(", "package", ")", "module...	38.521739	0.001101
def set_default_waveset(minwave=500, maxwave=26000, num=10000, delta=None, log=True): """Set the default wavelength set, ``pysynphot.refs._default_waveset``. Parameters ---------- minwave, maxwave : float, optional The start (inclusive) and end (exclusive) points of the ...	[ "def", "set_default_waveset", "(", "minwave", "=", "500", ",", "maxwave", "=", "26000", ",", "num", "=", "10000", ",", "delta", "=", "None", ",", "log", "=", "True", ")", ":", "global", "_default_waveset", "global", "_default_waveset_str", "# Must be int for n...	30.965517	0.00054
def _always_running_service(name): ''' Check if the service should always be running based on the KeepAlive Key in the service plist. :param str name: Service label, file name, or full path :return: True if the KeepAlive key is set to True, False if set to False or not set in the plist at ...	[ "def", "_always_running_service", "(", "name", ")", ":", "# get all the info from the launchctl service", "service_info", "=", "show", "(", "name", ")", "# get the value for the KeepAlive key in service plist", "try", ":", "keep_alive", "=", "service_info", "[", "'plist'", ...	27.105263	0.000937
def brpop(self, keys, timeout=0): """Emulate brpop""" return self._blocking_pop(self.rpop, keys, timeout)	[ "def", "brpop", "(", "self", ",", "keys", ",", "timeout", "=", "0", ")", ":", "return", "self", ".", "_blocking_pop", "(", "self", ".", "rpop", ",", "keys", ",", "timeout", ")" ]	39.666667	0.016529

def do_alarm_history_list(mc, args): '''List alarms state history.''' fields = {} if args.dimensions: fields['dimensions'] = utils.format_parameters(args.dimensions) if args.starttime: _translate_starttime(args) fields['start_time'] = args.starttime if args.endtime: f...

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def dateAt( self, point ): """ Returns the date at the given point. :param point | <QPoint> """ for date, data in self._dateGrid.items(): if ( data[1].contains(point) ): return QDate.fromJulianDay(date) return QDate()

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def live(self, url, resource_class, resource_args, params=None): """Get a live endpoint. Args: url(string): URL for the request resource_class(class): The class to use for entries coming from the live endpoint. resource_args(dict): Additional argum...

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def add_filter_function(self, name, new_function): """ name : hashable object The object to be used as the key for this filter function. Use this object to remove the filter function in the future. Typically this is a self descriptive string. new_...

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def equals_as(self, value_type, other): """ Compares this object value to specified specified value. When direct comparison gives negative results it converts values to type specified by type code and compare them again. :param value_type: the Typecode type that defined the type...

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def betting_market_rules_update( self, rules_id, names, descriptions, account=None, **kwargs ): """ Update betting market rules :param str rules_id: Id of the betting market rules to update :param list names: Internationalized names, e.g. ``[['de', 'Foo'], ['...

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def Animation_seekAnimations(self, animations, currentTime): """ Function path: Animation.seekAnimations Domain: Animation Method name: seekAnimations Parameters: Required arguments: 'animations' (type: array) -> List of animation ids to seek. 'currentTime' (type: number) -> Set the curren...

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def read_pickles (self): """Generate a sequence of objects by opening the path and unpickling items until EOF is reached. """ try: import cPickle as pickle except ImportError: import pickle with self.open (mode='rb') as f: while True:...

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def getATR(self): """Return card ATR""" CardConnection.getATR(self) if None == self.hcard: raise CardConnectionException('Card not connected') hresult, reader, state, protocol, atr = SCardStatus(self.hcard) if hresult != 0: raise CardConnectionException( ...

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def blank_lines(logical_line, blank_lines, indent_level, line_number, blank_before, previous_logical, previous_unindented_logical_line, previous_indent_level, lines): r"""Separate top-level function and class definitions with two blank lines. Method definitions i...

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def readDB(self): """Datamodel includes the following files: config.dat, devices.dat """ self.dm = DataModel(directory = tools.getConfigDir()) if (self.first_start): print(pre, "readDB : first start") self.dm.clearAll() self.dm.saveAll() # If ...

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def stop(self): """ Stops the timer. """ self._lock.acquire() try: # Stop the timer if self._timer != None: self._timer.stop() self._timer = None # Unset started flag self.started = False...

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def get_user_id(remote, email): """Get the Globus identity for a users given email. A Globus ID is a UUID that can uniquely identify a Globus user. See the docs here for v2/api/identities https://docs.globus.org/api/auth/reference/ """ try: url = '{}?usernames={}'.format(GLOBUS_USER_ID_...

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def get_extended_stats(self, data): """ Get more exhaustive statistics for the current user data -- A dictionary with the range of dates you want the stats for {'from': '2010/01/01', 'to': '2010/01/10'} """ return self._call('GET', self._generate_url_path('extended-stats') + '?' + self._urlencode(d...

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53.333333

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def read_xso(src, xsomap): """ Read a single XSO from a binary file-like input `src` containing an XML document. `xsomap` must be a mapping which maps :class:`~.XSO` subclasses to callables. These will be registered at a newly created :class:`.xso.XSOParser` instance which will be used to parse...

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def scale(self, data, unit): """Scales quantity to obtain dimensionful quantity. Args: data (numpy.array): the quantity that should be scaled. dim (str): the dimension of data as defined in phyvars. Return: (float, str): scaling factor and unit string. ...

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def _write_udf_descs(self, descs, outfp, progress): # type: (PyCdlib._UDFDescriptors, BinaryIO, PyCdlib._Progress) -> None ''' An internal method to write out a UDF Descriptor sequence. Parameters: descs - The UDF Descriptors object to write out. outfp - The output fil...

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def multiplied(*values): """ Returns the product of all supplied values. One or more *values* can be specified. For example, to light a :class:`~gpiozero.PWMLED` as the product (i.e. multiplication) of several potentiometers connected to an :class:`~gpiozero.MCP3008` ADC:: from gpiozero...

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def get_servers(self): """ Create the list of Server object inside the Datacenter objects. Build an internal list of VM Objects (pro or smart) as iterator. :return: bool """ json_scheme = self.gen_def_json_scheme('GetServers') json_obj = self.call_method_post(meth...

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def treeboost(self, data: ['SASdata', str] = None, assess: str = None, code: str = None, freq: str = None, importance: str = None, input: [str, list, dict] = None, performance: str = None, save:...

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def mouseMoveEvent(self, ev): """Update line with last point and current coordinates.""" pos = self.transformPos(ev.pos()) # Update coordinates in status bar if image is opened window = self.parent().window() if window.filePath is not None: self.parent().window().lab...

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def get_target_errors(self): """Just get a single error characterization based on the index relative to the target :param i: list index :type i: int :returns: list of base-wise errors :rtype: list of HPA groups """ if self._target_errors: return self._target_errors v = [] for i in...

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def set_application_language(params): """Set the locale and translation for a pywws program. This function reads the language from the configuration file, then calls :func:`set_locale` and :func:`set_translation`. :param params: a :class:`pywws.storage.params` object. :type params: object ""...

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def _value(self, obj, cls=None): """The state value (called from the wrapper)""" if obj is not None: return getattr(obj, self.propname) else: return getattr(cls, self.propname)

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def clear(self, store=True): """Clears (locks) the achievement. :rtype: bool """ result = self._iface.ach_lock(self.name) result and store and self._store() return result

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def is_ip_addr(value): """ Check that the supplied value is an Internet Protocol address, v.4, represented by a dotted-quad string, i.e. '1.2.3.4'. >>> vtor = Validator() >>> vtor.check('ip_addr', '1 ') '1' >>> vtor.check('ip_addr', ' 1.2') '1.2' >>> vtor.check('ip_addr', ' 1.2.3 ')...

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def get_fill_char( maf_status ): """ Return the character that should be used to fill between blocks having a given status """ ## assert maf_status not in ( maf.MAF_CONTIG_NESTED_STATUS, maf.MAF_NEW_NESTED_STATUS, ## maf.MAF_MAYBE_NEW_NESTED_STATUS ), \ ## "Ne...

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45.157895

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def countrate(self,binned=True,range=None,force=False): """Calculate effective stimulus in count/s. Also see :ref:`pysynphot-formula-countrate` and :ref:`pysynphot-formula-effstim`. .. note:: This is the calculation performed when the ETC invokes ``countrate``. ...

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def is_numeric_v_string_like(a, b): """ Check if we are comparing a string-like object to a numeric ndarray. NumPy doesn't like to compare such objects, especially numeric arrays and scalar string-likes. Parameters ---------- a : array-like, scalar The first object to check. b ...

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def print_featurelist(feature_list): """ Print the feature_list in a human-readable form. Parameters ---------- feature_list : list feature objects """ input_features = sum(map(lambda n: n.get_dimension(), feature_list)) print("## Features (%i)" % input_features) print("```"...

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def loads(data): """Parser entry point. Parses the output of a traceroute execution""" data += "\n_EOS_" # Append EOS token. Helps to match last RE_HOP # Get headers match_dest = RE_HEADER.search(data) dest_name = match_dest.group(1) dest_ip = match_dest.group(2) # The Traceroute is the ro...

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def bulkBatchDF(symbols, fields=None, range_='1m', last=10, token='', version=''): '''Optimized batch to fetch as much as possible at once https://iexcloud.io/docs/api/#batch-requests Args: symbols (list); List of tickers to request fields (list); List of fields to request range_ ...

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def _get_serial_number(self): """ Retrieves the FTDI device serial number. :returns: string containing the device serial number """ return usb.util.get_string(self._device.usb_dev, 64, self._device.usb_dev.iSerialNumber)

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def get_cache(self, decorated_function, *args, **kwargs): """ :meth:`WCacheStorage.get_cache` method implementation """ self.__check(decorated_function, *args, **kwargs) if decorated_function in self._storage: for i in self._storage[decorated_function]: if i['instance']() == args[0]: result = i['res...

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def typed_subpart_iterator(msg, maintype='text', subtype=None): """Iterate over the subparts with a given MIME type. Use `maintype' as the main MIME type to match against; this defaults to "text". Optional `subtype' is the MIME subtype to match against; if omitted, only the main type is matched. "...

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def compute_ihh_gaps(pos, map_pos, gap_scale, max_gap, is_accessible): """Compute spacing between variants for integrating haplotype homozygosity. Parameters ---------- pos : array_like, int, shape (n_variants,) Variant positions (physical distance). map_pos : array_like, float, shape (...

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def photparse(tab): """ Parse through a photometry table to group by source_id Parameters ---------- tab: list SQL query dictionary list from running query_dict.execute() Returns ------- newtab: list Dictionary list after parsing to group together sources """ # Ch...

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def request_instance(vm_, conn=None, call=None): ''' Request an instance to be built ''' if call == 'function': # Technically this function may be called other ways too, but it # definitely cannot be called with --function. raise SaltCloudSystemExit( 'The request_inst...

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def determine_struct_tree_subtype(self, data_type, obj): """ Searches through the JSON-object-compatible dict using the data type definition to determine which of the enumerated subtypes `obj` is. """ if '.tag' not in obj: raise bv.ValidationError("missing '.tag' key"...

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def oq_server_context_processor(request): """ A custom context processor which allows injection of additional context variables. """ context = {} context['oq_engine_server_url'] = ('//' + request.META.get('HTTP_HOST', ...

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def phi( n ): """Return the Euler totient function of n.""" assert isinstance( n, integer_types ) if n < 3: return 1 result = 1 ff = factorization( n ) for f in ff: e = f[1] if e > 1: result = result * f[0] ** (e-1) * ( f[0] - 1 ) else: result = result * ( f[0] - 1 ) return resu...

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def determine_file_extension_based_on_format(format_specifier): """ returns file extension string """ if format_specifier == FMT_INI: return 'ini' if format_specifier == FMT_DELIMITED: return '' if format_specifier == FMT_XML: return 'xml' if format_specifier == FMT_JSON: return 'json' if format_specifier...

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def modify_node(hostname, username, password, name, connection_limit=None, description=None, dynamic_ratio=None, logging=None, monitor=None, rate_limit=None, ratio=None, session=None, ...

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def conv_Pb_bound(R,dfree,Ck,SNRdB,hard_soft,M=2): """ Coded bit error probabilty Convolution coding bit error probability upper bound according to Ziemer & Peterson 7-16, p. 507 Mark Wickert November 2014 Parameters ---------- R: Code rate dfree: Free distance of ...

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def get_instance(self, payload): """ Build an instance of MonthlyInstance :param dict payload: Payload response from the API :returns: twilio.rest.api.v2010.account.usage.record.monthly.MonthlyInstance :rtype: twilio.rest.api.v2010.account.usage.record.monthly.MonthlyInstance ...

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def assert_order_met(self, finalize=False): """assert that calls have been made in the right order.""" error = None actual_call_len = len(self._actual_calls) expected_call_len = len(self._call_order) if actual_call_len == 0: error = "Not enough calls were made" ...

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def __read_config(self): """读取 config""" self.config = helpers.file2dict(self.config_path) self.global_config = helpers.file2dict(self.global_config_path) self.config.update(self.global_config)

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def _make_entity_from_id(entity_cls, entity_obj_or_id, server_config): """Given an entity object or an ID, return an entity object. If the value passed in is an object that is a subclass of :class:`Entity`, return that value. Otherwise, create an object of the type that ``field`` references, give that ...

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def _xpathDict(xml, xpath, cls, parent, **kwargs): """ Returns a default Dict given certain information :param xml: An xml tree :type xml: etree :param xpath: XPath to find children :type xpath: str :param cls: Class identifying children :type cls: inventory.Resource :param parent: Pare...

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def get_requirements(filename='requirements.txt'): """ Get the contents of a file listing the requirements. :param filename: path to a requirements file :type filename: str :returns: the list of requirements :return type: list """ with open(filename) as f: return [ ...

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def get_mean_and_stddevs(self, sites, rup, dists, imt, stddev_types): """ See :meth:`superclass method <.base.GroundShakingIntensityModel.get_mean_and_stddevs>` for spec of input and result values. """ # extracting dictionary of coefficients C = self.COEFFS[imt] ...

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def add(self, sentence_text, **kwargs): ''' Parse a text string and add it to this doc ''' sent = MeCabSent.parse(sentence_text, **kwargs) self.sents.append(sent) return sent

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def git_info(): """ A hash of Git data that can be used to display more information to users. Example: "git": { "head": { "id": "5e837ce92220be64821128a70f6093f836dd2c05", "author_name": "Wil Gieseler", "author_email": "wil@example.com", ...

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def urlopen(url, session, referrer=None, max_content_bytes=None, timeout=ConnectionTimeoutSecs, raise_for_status=True, stream=False, data=None, useragent=UserAgent): """Open an URL and return the response object.""" out.debug(u'Open URL %s' % url) headers = {'User-Agent': useragent} ...

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def query_recent(num=8, **kwargs): ''' query recent posts. ''' order_by_create = kwargs.get('order_by_create', False) kind = kwargs.get('kind', None) if order_by_create: if kind: recent_recs = TabPost.select().where( (TabPos...

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def label_suspicious(self, reason): """Add suspicion reason and set the suspicious flag.""" self.suspicion_reasons.append(reason) self.is_suspect = True

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def merge_tags(left, right, factory=Tags): """ Merge two sets of tags into a new troposphere object Args: left (Union[dict, troposphere.Tags]): dictionary or Tags object to be merged with lower priority right (Union[dict, troposphere.Tags]): dictionary or Tags object to be ...

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def stop_refresh(self): """Stop redrawing the canvas at the previously set timed interval. """ self.logger.debug("stopping timed refresh") self.rf_flags['done'] = True self.rf_timer.clear()

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def factory(fileobject, jfs, parentpath): # fileobject from lxml.objectify 'Class method to get the correct file class instatiated' if hasattr(fileobject, 'currentRevision'): # a normal file return JFSFile(fileobject, jfs, parentpath) elif str(fileobject.latestRevision.state) == Prot...

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def ObjectEnum(ctx): """Object Enumeration. Should export the whole list from the game for the best accuracy. """ return Enum( ctx, villager_male=83, villager_female=293, scout_cavalry=448, eagle_warrior=751, king=434, flare=332, relic=285...

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def records( self ): """ Returns the record list that ist linked with this combo box. :return [<orb.Table>, ..] """ records = [] for i in range(self.count()): record = self.recordAt(i) if record: records.appen...

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def _validate_minlength(self, min_length, field, value): """ {'type': 'integer'} """ if isinstance(value, Iterable) and len(value) < min_length: self._error(field, errors.MIN_LENGTH, len(value))

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def _publish_internal(self, push_messages): """Send push notifications The server will validate any type of syntax errors and the client will raise the proper exceptions for the user to handle. Each notification is of the form: { 'to': 'ExponentPushToken[xxx]', ...

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def get_tree(self, *page_numbers): """ Return lxml.etree.ElementTree for entire document, or page numbers given if any. """ cache_key = "_".join(map(str, _flatten(page_numbers))) tree = self._parse_tree_cacher.get(cache_key) if tree is None: ...

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def get_insert_idx(pos_dict, name): "Return the position to insert a given function doc in a notebook." keys,i = list(pos_dict.keys()),0 while i < len(keys) and str.lower(keys[i]) < str.lower(name): i+=1 if i == len(keys): return -1 else: return pos_dict[keys[i]]

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def generate(self, title=None, version=None, base_path=None, info=None, swagger=None, **kwargs): """Generate a Swagger 2.0 documentation. Keyword arguments may be used to provide additional information to build methods as such ignores. :param title: The name present...

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37.95

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def exact_cftime_datetime_difference(a, b): """Exact computation of b - a Assumes: a = a_0 + a_m b = b_0 + b_m Here a_0, and b_0 represent the input dates rounded down to the nearest second, and a_m, and b_m represent the remaining microseconds associated with date a and date ...

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def mkrngs(self): """ Transform boolean arrays into list of limit pairs. Gets Time limits of signal/background boolean arrays and stores them as sigrng and bkgrng arrays. These arrays can be saved by 'save_ranges' in the analyse object. """ bbool = bool_2_indices...

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def from_array(self, coeffs, normalization='4pi', csphase=1, lmax=None, copy=True): """ Initialize the class with spherical harmonic coefficients from an input array. Usage ----- x = SHCoeffs.from_array(array, [normalization, csphase, lmax, copy]) ...

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def lsr_pairwise(n_items, data, alpha=0.0, initial_params=None): """Compute the LSR estimate of model parameters. This function implements the Luce Spectral Ranking inference algorithm [MG15]_ for pairwise-comparison data (see :ref:`data-pairwise`). The argument ``initial_params`` can be used to itera...

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37.916667

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def print_lh(self, joint=True): """ Print the total likelihood of the tree given the constrained leaves Parameters ---------- joint : bool If true, print joint LH, else print marginal LH """ try: u_lh = self.tree.unconstrained_sequence_...

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def unit_defs_from_sheet(sheet, column_names): """A generator that parses a worksheet containing UNECE code definitions. Args: sheet: An xldr.sheet object representing a UNECE code worksheet. column_names: A list/tuple with the expected column names corresponding to the unit name, code an...

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def StartExecServer(): """Opens a socket in /tmp, execs data from it and writes results back.""" sockdir = '/tmp/pyringe_%s' % os.getpid() if not os.path.isdir(sockdir): os.mkdir(sockdir) socket_path = ('%s/%s.execsock' % (sockdir, threading.current_thread().ident)) if os.path.exists(soc...

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def from_dict(input_dict): """ Instantiate an object of a derived class using the information in input_dict (built by the to_dict method of the derived class). More specifically, after reading the derived class from input_dict, it calls the method _build_from_input_dict of the de...

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def get_infobox(ptree, boxterm="box"): """ Returns parse tree template with title containing <boxterm> as dict: <box> = {<name>: <value>, ...} If simple transform fails, attempts more general assembly: <box> = {'boxes': [{<title>: <parts>}, ...], 'count': <len(boxes)>} ...

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def dumps_list(l, *, escape=True, token='%\n', mapper=None, as_content=True): r"""Try to generate a LaTeX string of a list that can contain anything. Args ---- l : list A list of objects to be converted into a single string. escape : bool Whether to escape special LaTeX characters i...

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def add_file(self, name="", hashalg="", hash="", comClasses=None, typelibs=None, comInterfaceProxyStubs=None, windowClasses=None): """ Shortcut for manifest.files.append """ self.files.append(File(name, hashalg, hash, comClasses, typelibs, c...

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def map_crt_to_pol(aryXCrds, aryYrds): """Remap coordinates from cartesian to polar Parameters ---------- aryXCrds : 1D numpy array Array with x coordinate values. aryYrds : 1D numpy array Array with y coordinate values. Returns ------- aryTht : 1D numpy array A...

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def conv1d_block(inputs, filters, dilation_rates_and_kernel_sizes, **kwargs): """A block of standard 1d convolutions.""" return conv_block_internal(conv1d, inputs, filters, dilation_rates_and_kernel_sizes, **kwargs)

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def get_message_plain_text(msg: Message): """ Converts an HTML message to plain text. :param msg: A :class:`~flask_mail.Message` :return: The plain text message. """ if msg.body: return msg.body if BeautifulSoup is None or not msg.html: return msg.html plain_text = '\n...

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def list(self, filter_guid=None, filter_ids=None, detailed=None, page=None): """ This API endpoint returns a paginated list of the plugins associated with your New Relic account. Plugins can be filtered by their name or by a list of IDs. :type filter_guid: str :param fi...

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def get_dir(path_name, *, greedy=False, override=None, identity=None): """ Gets the directory path of the given path name. If the argument 'greedy' is specified as True, then if the path name represents a directory itself, the function will return the whole path """ if identity is None: ...

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def parse_http_accept_header(header): """ Return a list of content types listed in the HTTP Accept header ordered by quality. :param header: A string describing the contents of the HTTP Accept header. """ components = [item.strip() for item in header.split(',')] l = [] for component in...

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def _encode_decode_decorator(func): """decorator for encoding and decoding geoms""" def wrapper(*args): """error catching""" try: processed_geom = func(*args) return processed_geom except ImportError as err: raise ImportError('The Python package `shape...

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def _number_shapes_ancestors(self, topoTypeA, topoTypeB, topologicalEntity): '''returns the number of shape ancestors If you want to know how many edges a faces has: _number_shapes_ancestors(self, TopAbs_EDGE, TopAbs_FACE, edg) will return the number of edges a faces has @pa...

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def get_trans_mat(r_axis, angle, normal=False, trans_cry=np.eye(3), lat_type='c', ratio=None, surface=None, max_search=20, quick_gen=False): """ Find the two transformation matrix for each grain from given rotation axis, GB plane, rotation angle and corresponding ratio (see...

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def _process_pathway(self, row): """ Process row of CTD data from CTD_genes_pathways.tsv.gz and generate triples Args: :param row (list): row of CTD data Returns: :return None """ model = Model(self.graph) self._check_list_len(row, ...

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def _GetAction(self, action, text): """Parse the well known actions for easy reading. Args: action (str): the function or action called by the agent. text (str): mac Wifi log text. Returns: str: a formatted string representing the known (or common) action. If the action is no...

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def _yarn_cluster_metrics(self, rm_address, instance, addl_tags): """ Get metrics related to YARN cluster """ metrics_json = self._rest_request_to_json(rm_address, instance, YARN_CLUSTER_METRICS_PATH, addl_tags) if metrics_json: yarn_metrics = metrics_json[YARN_CLUS...

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def parse(cls, trust_root): """ This method creates a C{L{TrustRoot}} instance from the given input, if possible. @param trust_root: This is the trust root to parse into a C{L{TrustRoot}} object. @type trust_root: C{str} @return: A C{L{TrustRoot}} instance if...

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def get_dict(self, exclude_keys=None, include_keys=None): """ return dictionary of keys and values corresponding to this model's data - if include_keys is null the function will return all keys :param exclude_keys: (optional) is a list of columns from model that should not be re...

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def to_n_ref(self, fill=0, dtype='i1'): """Transform each genotype call into the number of reference alleles. Parameters ---------- fill : int, optional Use this value to represent missing calls. dtype : dtype, optional Output dtype. Retu...

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def Seq(sequence, annotations=None, block_length=10, blocks_per_line=6, style=DEFAULT_STYLE): """ Pretty-printed sequence object that's displayed nicely in the IPython Notebook. :arg style: Custom CSS as a `format string`, where a selector for the top-level ``<pre>`` element is substitu...

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def _filter_stmts(self, stmts, frame, offset): """Filter the given list of statements to remove ignorable statements. If self is not a frame itself and the name is found in the inner frame locals, statements will be filtered to remove ignorable statements according to self's location. ...

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def eps_logo( matrix, base_width, height, colors=DNA_DEFAULT_COLORS ): """ Return an EPS document containing a sequence logo for matrix where each bases is shown as a column of `base_width` points and the total logo height is `height` points. If `colors` is provided it is a mapping from characters t...

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def install(self, release_id, upgrade=False): """Install target packages into a virtual environment. If the virtual environment for the given release ID does not exist on the remote system, it will be created. The virtual environment will be created according to the standard Tunic ...

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def finder(package): """ Return a resource finder for a package. :param package: The name of the package. :return: A :class:`ResourceFinder` instance for the package. """ if package in _finder_cache: result = _finder_cache[package] else: if package not in sys.modules: ...

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def set_default_waveset(minwave=500, maxwave=26000, num=10000, delta=None, log=True): """Set the default wavelength set, ``pysynphot.refs._default_waveset``. Parameters ---------- minwave, maxwave : float, optional The start (inclusive) and end (exclusive) points of the ...

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def _always_running_service(name): ''' Check if the service should always be running based on the KeepAlive Key in the service plist. :param str name: Service label, file name, or full path :return: True if the KeepAlive key is set to True, False if set to False or not set in the plist at ...

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def brpop(self, keys, timeout=0): """Emulate brpop""" return self._blocking_pop(self.rpop, keys, timeout)

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