kejian/codesearchnet-python-rebalanced · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def remove_class(text): """ Remove the CLASS from each DNS record, if present. The only class that gets used today (for all intents and purposes) is 'IN'. """ # see RFC 1035 for list of classes lines = text.split("\n") ret = [] for line in lines: tokens = tokenize_line(line)...	[ "def", "remove_class", "(", "text", ")", ":", "# see RFC 1035 for list of classes", "lines", "=", "text", ".", "split", "(", "\"\\n\"", ")", "ret", "=", "[", "]", "for", "line", "in", "lines", ":", "tokens", "=", "tokenize_line", "(", "line", ")", "tokens_...	26.115385	0.00142
def estimator_values_df(run_list, estimator_list, **kwargs): """Get a dataframe of estimator values. NB when parallelised the results will not be produced in order (so results from some run number will not nessesarily correspond to that number run in run_list). Parameters ---------- run_li...	[ "def", "estimator_values_df", "(", "run_list", ",", "estimator_list", ",", "", "", "kwargs", ")", ":", "estimator_names", "=", "kwargs", ".", "pop", "(", "'estimator_names'", ",", "[", "'est_'", "+", "str", "(", "i", ")", "for", "i", "in", "range", "("...	36.893617	0.000562
def _AddInitMethod(message_descriptor, cls): """Adds an __init__ method to cls.""" def _GetIntegerEnumValue(enum_type, value): """Convert a string or integer enum value to an integer. If the value is a string, it is converted to the enum value in enum_type with the same name. If the value is not a st...	[ "def", "_AddInitMethod", "(", "message_descriptor", ",", "cls", ")", ":", "def", "_GetIntegerEnumValue", "(", "enum_type", ",", "value", ")", ":", "\"\"\"Convert a string or integer enum value to an integer.\n\n If the value is a string, it is converted to the enum value in\n e...	39.231707	0.008793
def safe_path(path, replacement="_"): """ Replace unsafe path characters with underscores. Do NOT use this with existing paths that cannot be modified, this to to help generate new, clean paths. Supports windows and *nix systems. :param path: path as a string :param replacement: character ...	[ "def", "safe_path", "(", "path", ",", "replacement", "=", "\"_\"", ")", ":", "if", "not", "isinstance", "(", "path", ",", "str", ")", ":", "raise", "TypeError", "(", "\"path must be a string\"", ")", "if", "os", ".", "sep", "not", "in", "path", ":", "r...	37.864865	0.000696
def rebuild(self, scene=None): """ This method is where you will rebuild the geometry and \ data for a node. :param scene <QGraphicsScene> \|\| None :return <bool> success """ rect = QRectF(0, 0, self.minimumWidth(), self.minimumHeig...	[ "def", "rebuild", "(", "self", ",", "scene", "=", "None", ")", ":", "rect", "=", "QRectF", "(", "0", ",", "0", ",", "self", ".", "minimumWidth", "(", ")", ",", "self", ".", "minimumHeight", "(", ")", ")", "self", ".", "setRect", "(", "rect", ")",...	29.857143	0.009281
def entities(self): """ Access the entities :returns: twilio.rest.authy.v1.service.entity.EntityList :rtype: twilio.rest.authy.v1.service.entity.EntityList """ if self._entities is None: self._entities = EntityList(self._version, service_sid=self._solution['s...	[ "def", "entities", "(", "self", ")", ":", "if", "self", ".", "_entities", "is", "None", ":", "self", ".", "_entities", "=", "EntityList", "(", "self", ".", "_version", ",", "service_sid", "=", "self", ".", "_solution", "[", "'sid'", "]", ",", ")", "r...	34.8	0.008403
def _to_dict(self): """Return a json dictionary representing this model.""" _dict = {} if hasattr(self, 'customization_id') and self.customization_id is not None: _dict['customization_id'] = self.customization_id if hasattr(self, 'name') and self.name is no...	[ "def", "_to_dict", "(", "self", ")", ":", "_dict", "=", "{", "}", "if", "hasattr", "(", "self", ",", "'customization_id'", ")", "and", "self", ".", "customization_id", "is", "not", "None", ":", "_dict", "[", "'customization_id'", "]", "=", "self", ".", ...	51.333333	0.001821
def video_pos(self): """ Returns: (int, int, int, int): Video spatial position (x1, y1, x2, y2) where (x1, y1) is top left, and (x2, y2) is bottom right. All values in px. """ position_string = self._player_interface.VideoPos(ObjectPath('/not...	[ "def", "video_pos", "(", "self", ")", ":", "position_string", "=", "self", ".", "_player_interface", ".", "VideoPos", "(", "ObjectPath", "(", "'/not/used'", ")", ")", "return", "list", "(", "map", "(", "int", ",", "position_string", ".", "split", "(", "\" ...	47.375	0.012953
def execute_insert_no_results(self, sock_info, run, op_id, acknowledged): """Execute insert, returning no results. """ command = SON([('insert', self.collection.name), ('ordered', self.ordered)]) concern = {'w': int(self.ordered)} command['writeConcern'] = ...	[ "def", "execute_insert_no_results", "(", "self", ",", "sock_info", ",", "run", ",", "op_id", ",", "acknowledged", ")", ":", "command", "=", "SON", "(", "[", "(", "'insert'", ",", "self", ".", "collection", ".", "name", ")", ",", "(", "'ordered'", ",", ...	47.882353	0.00241
def save_file_data(self, path): """ Implements the abstract method of the ExternalEditor class. """ try: # just create file with empty text first; this command also creates the whole path to the file filesystem.write_file(os.path.join(path, storage.SCRIPT_FILE), "", creat...	[ "def", "save_file_data", "(", "self", ",", "path", ")", ":", "try", ":", "# just create file with empty text first; this command also creates the whole path to the file", "filesystem", ".", "write_file", "(", "os", ".", "path", ".", "join", "(", "path", ",", "storage", ...	65.181818	0.008253
async def get_deals(self, **params): """Receives all users deals Accepts: - buyer public key """ if params.get("message"): params = json.loads(params.get("message", "{}")) if not params: return {"error":400, "reason":"Missed required fields"} buyer = params.get("buyer") if not buyer: retur...	[ "async", "def", "get_deals", "(", "self", ",", "", "", "params", ")", ":", "if", "params", ".", "get", "(", "\"message\"", ")", ":", "params", "=", "json", ".", "loads", "(", "params", ".", "get", "(", "\"message\"", ",", "\"{}\"", ")", ")", "if"...	27.291667	0.042773
def switch(self): """Switch to the hub. This method pauses the current fiber and runs the event loop. The caller should ensure that it has set up appropriate callbacks so that it will get scheduled again, preferably using :class:`switch_back`. In this case then return value of t...	[ "def", "switch", "(", "self", ")", ":", "if", "self", ".", "_loop", "is", "None", "or", "not", "self", ".", "is_alive", "(", ")", ":", "raise", "RuntimeError", "(", "'hub is closed/dead'", ")", "elif", "fibers", ".", "current", "(", ")", "is", "self", ...	52.4	0.001874
def _agent_registration(self): """Register this agent with the server. This method registers the cfg agent with the neutron server so hosting devices can be assigned to it. In case the server is not ready to accept registration (it sends a False) then we retry registration for `...	[ "def", "_agent_registration", "(", "self", ")", ":", "for", "attempts", "in", "range", "(", "MAX_REGISTRATION_ATTEMPTS", ")", ":", "context", "=", "bc", ".", "context", ".", "get_admin_context_without_session", "(", ")", "self", ".", "send_agent_report", "(", "s...	52.864865	0.001004
def authorize(self, cidr_ip=None, ec2_group=None): """ Add a new rule to this DBSecurity group. You need to pass in either a CIDR block to authorize or and EC2 SecurityGroup. @type cidr_ip: string @param cidr_ip: A valid CIDR IP range to authorize @type ec2_grou...	[ "def", "authorize", "(", "self", ",", "cidr_ip", "=", "None", ",", "ec2_group", "=", "None", ")", ":", "if", "isinstance", "(", "ec2_group", ",", "SecurityGroup", ")", ":", "group_name", "=", "ec2_group", ".", "name", "group_owner_id", "=", "ec2_group", "....	38	0.002139
def set_ghost_status(self, ghost_status): """ Sets ghost RAM status :param ghost_status: state flag indicating status 0 => Do not use IOS ghosting 1 => This is a ghost instance 2 => Use an existing ghost instance """ yield from self._hypervisor.send('vm ...	[ "def", "set_ghost_status", "(", "self", ",", "ghost_status", ")", ":", "yield", "from", "self", ".", "_hypervisor", ".", "send", "(", "'vm set_ghost_status \"{name}\" {ghost_status}'", ".", "format", "(", "name", "=", "self", ".", "_name", ",", "ghost_status", "...	49.823529	0.008111
def parse(self, character_page): """Parses the DOM and returns character attributes in the main-content area. :type character_page: :class:`bs4.BeautifulSoup` :param character_page: MAL character page's DOM :rtype: dict :return: Character attributes. """ character_info = self.parse_sideba...	[ "def", "parse", "(", "self", ",", "character_page", ")", ":", "character_info", "=", "self", ".", "parse_sidebar", "(", "character_page", ")", "second_col", "=", "character_page", ".", "find", "(", "u'div'", ",", "{", "'id'", ":", "'content'", "}", ")", "....	34.153846	0.014448
def _thread_main(self): """The entry point for the worker thread. Pulls pending log entries off the queue and writes them in batches to the Cloud Logger. """ _LOGGER.debug("Background thread started.") quit_ = False while True: batch = self._cloud_lo...	[ "def", "_thread_main", "(", "self", ")", ":", "_LOGGER", ".", "debug", "(", "\"Background thread started.\"", ")", "quit_", "=", "False", "while", "True", ":", "batch", "=", "self", ".", "_cloud_logger", ".", "batch", "(", ")", "items", "=", "_get_many", "...	30	0.001899
def get_nonzero_random_bytes(length, rnd=default_crypto_random): ''' Accumulate random bit string and remove \0 bytes until the needed length is obtained. ''' result = [] i = 0 while i < length: rnd = rnd.getrandbits(12length) s = i2osp(rnd, 3length) s = s.rep...	[ "def", "get_nonzero_random_bytes", "(", "length", ",", "rnd", "=", "default_crypto_random", ")", ":", "result", "=", "[", "]", "i", "=", "0", "while", "i", "<", "length", ":", "rnd", "=", "rnd", ".", "getrandbits", "(", "12", "*", "length", ")", "s", ...	29	0.002387
def is_first_instance_k8s(current_pod_name=None): """ Returns True if the current pod is the first replica in Kubernetes cluster. """ current_pod_name = current_pod_name or os.environ.get('POD_NAME') if not current_pod_name: raise StackInterrogationException('Pod name not known') namesp...	[ "def", "is_first_instance_k8s", "(", "current_pod_name", "=", "None", ")", ":", "current_pod_name", "=", "current_pod_name", "or", "os", ".", "environ", ".", "get", "(", "'POD_NAME'", ")", "if", "not", "current_pod_name", ":", "raise", "StackInterrogationException",...	39.956522	0.002125
def start(self): """ Starts the session. Starting the session will actually get the API key of the current user """ if NURESTSession.session_stack: bambou_logger.critical("Starting a session inside a with statement is not supported.") raise Excep...	[ "def", "start", "(", "self", ")", ":", "if", "NURESTSession", ".", "session_stack", ":", "bambou_logger", ".", "critical", "(", "\"Starting a session inside a with statement is not supported.\"", ")", "raise", "Exception", "(", "\"Starting a session inside a with statement is...	31.333333	0.010331
def add_beacon(self, name, beacon_data): ''' Add a beacon item ''' data = {} data[name] = beacon_data if name in self._get_beacons(include_opts=False): comment = 'Cannot update beacon item {0}, ' \ 'because it is configured in pillar.'....	[ "def", "add_beacon", "(", "self", ",", "name", ",", "beacon_data", ")", ":", "data", "=", "{", "}", "data", "[", "name", "]", "=", "beacon_data", "if", "name", "in", "self", ".", "_get_beacons", "(", "include_opts", "=", "False", ")", ":", "comment", ...	36.464286	0.001908
def run_scan_command( self, server_info: ServerConnectivityInfo, scan_command: PluginScanCommand ) -> PluginScanResult: """Run a single scan command against a server; will block until the scan command has been completed. Args: server_info: The server'...	[ "def", "run_scan_command", "(", "self", ",", "server_info", ":", "ServerConnectivityInfo", ",", "scan_command", ":", "PluginScanCommand", ")", "->", "PluginScanResult", ":", "plugin_class", "=", "self", ".", "_plugins_repository", ".", "get_plugin_class_for_command", "(...	47.210526	0.008743
def init_board(self): """Init a valid board by given settings. Parameters ---------- mine_map : numpy.ndarray the map that defines the mine 0 is empty, 1 is mine info_map : numpy.ndarray the map that presents to gamer 0-8 is number...	[ "def", "init_board", "(", "self", ")", ":", "self", ".", "mine_map", "=", "np", ".", "zeros", "(", "(", "self", ".", "board_height", ",", "self", ".", "board_width", ")", ",", "dtype", "=", "np", ".", "uint8", ")", "idx_list", "=", "np", ".", "rand...	34.586207	0.00194
def mime_type(self, category=None): """ :param category: application\|audio\|image\|message\|model\|multipart\|text\|video """ category = category if category else self.random_element( list(self.mime_types.keys())) return self.random_element(self.mime_types[category])	[ "def", "mime_type", "(", "self", ",", "category", "=", "None", ")", ":", "category", "=", "category", "if", "category", "else", "self", ".", "random_element", "(", "list", "(", "self", ".", "mime_types", ".", "keys", "(", ")", ")", ")", "return", "self...	43.857143	0.009585
def should_update(stack): """Tests whether a stack should be submitted for updates to CF. Args: stack (:class:`stacker.stack.Stack`): The stack object to check. Returns: bool: If the stack should be updated, return True. """ if stack.locked: if not stack.force: ...	[ "def", "should_update", "(", "stack", ")", ":", "if", "stack", ".", "locked", ":", "if", "not", "stack", ".", "force", ":", "logger", ".", "debug", "(", "\"Stack %s locked and not in --force list. \"", "\"Refusing to update.\"", ",", "stack", ".", "name", ")", ...	30.684211	0.001664
def get_item(self, kwargs): """ Reload context on each access. """ self.reload_context(es_based=False, kwargs) return super(ItemSubresourceBaseView, self).get_item(**kwargs)	[ "def", "get_item", "(", "self", ",", "", "", "kwargs", ")", ":", "self", ".", "reload_context", "(", "es_based", "=", "False", ",", "", "", "kwargs", ")", "return", "super", "(", "ItemSubresourceBaseView", ",", "self", ")", ".", "get_item", "(", "*...	49.5	0.00995
def loggable(obj): """Return "True" if the obj implements the minimum Logger API required by the 'trace' decorator. """ if isinstance(obj, logging.Logger): return True else: return (inspect.isclass(obj) and inspect.ismethod(getattr(obj, 'debug', None)) ...	[ "def", "loggable", "(", "obj", ")", ":", "if", "isinstance", "(", "obj", ",", "logging", ".", "Logger", ")", ":", "return", "True", "else", ":", "return", "(", "inspect", ".", "isclass", "(", "obj", ")", "and", "inspect", ".", "ismethod", "(", "getat...	39.727273	0.002237
def silhouette_score(self, data, metric='euclidean', sample_size=None, random_state=None, **kwds): """ Computes the mean Silhouette Coefficient of all samples (implicit evaluation) :param data: The data that the clusters are generated from :param metric: the pairwise distance metric ...	[ "def", "silhouette_score", "(", "self", ",", "data", ",", "metric", "=", "'euclidean'", ",", "sample_size", "=", "None", ",", "random_state", "=", "None", ",", "", "", "kwds", ")", ":", "return", "silhouette_score", "(", "data", ",", "self", ".", "get_...	63.25	0.01039
def register(self, schema): """Register input schema class. When registering a schema, all inner schemas are registered as well. :param Schema schema: schema to register. :return: old registered schema. :rtype: type """ result = None uuid = schema.uuid ...	[ "def", "register", "(", "self", ",", "schema", ")", ":", "result", "=", "None", "uuid", "=", "schema", ".", "uuid", "if", "uuid", "in", "self", ".", "_schbyuuid", ":", "result", "=", "self", ".", "_schbyuuid", "[", "uuid", "]", "if", "result", "!=", ...	24.09375	0.002494
def build_header( filename, disposition='attachment', filename_compat=None ): """Generate a Content-Disposition header for a given filename. For legacy clients that don't understand the filename* parameter, a filename_compat value may be given. It should either be ascii-only (recommended) or iso-88...	[ "def", "build_header", "(", "filename", ",", "disposition", "=", "'attachment'", ",", "filename_compat", "=", "None", ")", ":", "# While this method exists, it could also sanitize the filename", "# by rejecting slashes or other weirdness that might upset a receiver.", "if", "dispos...	39.375	0.000442
def correct(self, text: str, srctext=None) -> str: """Automatically apply suggestions to the text.""" return correct(text, self.check(text, srctext))	[ "def", "correct", "(", "self", ",", "text", ":", "str", ",", "srctext", "=", "None", ")", "->", "str", ":", "return", "correct", "(", "text", ",", "self", ".", "check", "(", "text", ",", "srctext", ")", ")" ]	54.333333	0.012121
def build_geometry_by_shape( feed: "Feed", shape_ids: Optional[List[str]] = None, *, use_utm: bool = False, ) -> Dict: """ Return a dictionary with structure shape_id -> Shapely LineString of shape. Parameters ---------- feed : Feed shape_ids : list IDs of shapes in ...	[ "def", "build_geometry_by_shape", "(", "feed", ":", "\"Feed\"", ",", "shape_ids", ":", "Optional", "[", "List", "[", "str", "]", "]", "=", "None", ",", "*", ",", "use_utm", ":", "bool", "=", "False", ",", ")", "->", "Dict", ":", "if", "feed", ".", ...	28.701754	0.000591
def urlencode(data): """A version of `urllib.urlencode` that isn't insane. This only cares that `data` is an iterable of iterables. Each sub-iterable must be of overall length 2, i.e. a name/value pair. Unicode strings will be encoded to UTF-8. This is what Django expects; see `smart_text` in the ...	[ "def", "urlencode", "(", "data", ")", ":", "def", "dec", "(", "string", ")", ":", "if", "isinstance", "(", "string", ",", "bytes", ")", ":", "string", "=", "string", ".", "decode", "(", "\"utf-8\"", ")", "return", "quote_plus", "(", "string", ")", "r...	33.352941	0.001715
def purge (self, strategy = "klogn", keep = None, deleteNonSnapshots = False, **kwargs): """Purge snapshot directory of snapshots according to some strategy, preserving ...	[ "def", "purge", "(", "self", ",", "strategy", "=", "\"klogn\"", ",", "keep", "=", "None", ",", "deleteNonSnapshots", "=", "False", ",", "", "", "kwargs", ")", ":", "assert", "(", "isinstance", "(", "keep", ",", "(", "list", ",", "set", ")", ")", ...	38.891892	0.046102
def createMCMC(config,srcfile,section='source',samples=None): """ Create an MCMC instance """ source = ugali.analysis.source.Source() source.load(srcfile,section=section) loglike = ugali.analysis.loglike.createLoglike(config,source) mcmc = MCMC(config,loglike) if samples is not None: m...	[ "def", "createMCMC", "(", "config", ",", "srcfile", ",", "section", "=", "'source'", ",", "samples", "=", "None", ")", ":", "source", "=", "ugali", ".", "analysis", ".", "source", ".", "Source", "(", ")", "source", ".", "load", "(", "srcfile", ",", "...	29.25	0.019337
def _parse_frange_part(frange): """ Internal method: parse a discrete frame range part. Args: frange (str): single part of a frame range as a string (ie "1-100x5") Returns: tuple: (start, end, modifier, chunk) Raises: :class:...	[ "def", "_parse_frange_part", "(", "frange", ")", ":", "match", "=", "FRANGE_RE", ".", "match", "(", "frange", ")", "if", "not", "match", ":", "msg", "=", "'Could not parse \"{0}\": did not match {1}'", "raise", "ParseException", "(", "msg", ".", "format", "(", ...	35.575758	0.001658
def pick_trust_for_twisted(netloc, possible): """ Pick the right "trust roots" (certificate authority certificates) for the given server and return it in the form Twisted wants. Kubernetes certificates are often self-signed or otherwise exist outside of the typical certificate authority cartel syst...	[ "def", "pick_trust_for_twisted", "(", "netloc", ",", "possible", ")", ":", "try", ":", "trust_cert", "=", "possible", "[", "netloc", "]", "except", "KeyError", ":", "return", "None", "cert", "=", "ssl", ".", "Certificate", ".", "load", "(", "trust_cert", "...	40.875	0.000996
def approve(ctx, _spender='address', _value='uint256', returns=STATUS): """ Standardized Contract API: function approve(address _spender, uint256 _value) returns (bool success) """ ctx.allowances[ctx.msg_sender][_spender] += _value ctx.Approval(ctx.msg_sender, _spender, _value) ...	[ "def", "approve", "(", "ctx", ",", "_spender", "=", "'address'", ",", "_value", "=", "'uint256'", ",", "returns", "=", "STATUS", ")", ":", "ctx", ".", "allowances", "[", "ctx", ".", "msg_sender", "]", "[", "_spender", "]", "+=", "_value", "ctx", ".", ...	47.142857	0.008929
def __write_text(self, outfile): """ Write text information into file This method should be called only from ``write_idat`` method or chunk order will be ruined. """ for k, v in self.text.items(): if not isinstance(v, bytes): try: ...	[ "def", "__write_text", "(", "self", ",", "outfile", ")", ":", "for", "k", ",", "v", "in", "self", ".", "text", ".", "items", "(", ")", ":", "if", "not", "isinstance", "(", "v", ",", "bytes", ")", ":", "try", ":", "international", "=", "False", "v...	37.423077	0.002004
def rebalance(self): """The genetic rebalancing algorithm runs for a fixed number of generations. Each generation has two phases: exploration and pruning. In exploration, a large set of possible states are found by randomly applying assignment changes to the existing states. In pruning, ...	[ "def", "rebalance", "(", "self", ")", ":", "if", "self", ".", "args", ".", "num_gens", "<", "self", ".", "args", ".", "max_partition_movements", ":", "self", ".", "log", ".", "warning", "(", "\"num-gens ({num_gens}) is less than max-partition-movements\"", "\" ({m...	42.134831	0.001042
def get_url_directory_string(url): """ Determines the url's directory string. :param str url: the url to extract the directory string from :return str: the directory string on the server """ domain = UrlExtractor.get_allowed_domain(url) splitted_url = url.split(...	[ "def", "get_url_directory_string", "(", "url", ")", ":", "domain", "=", "UrlExtractor", ".", "get_allowed_domain", "(", "url", ")", "splitted_url", "=", "url", ".", "split", "(", "'/'", ")", "# the following commented list comprehension could replace", "# the following ...	38.708333	0.002101
def get_cached_parent_for_taxon(self, child_taxon): """If the taxa are being cached, this call will create a the lineage "spike" for taxon child_taxon Expecting child_taxon to have a non-empty _taxonomic_lineage with response dicts that can create an ancestral TaxonWrapper. """ ...	[ "def", "get_cached_parent_for_taxon", "(", "self", ",", "child_taxon", ")", ":", "if", "self", ".", "_ott_id2taxon", "is", "None", ":", "resp", "=", "child_taxon", ".", "_taxonomic_lineage", "[", "0", "]", "tl", "=", "child_taxon", ".", "_taxonomic_lineage", "...	47.545455	0.002498
def send(self, email, body): """Send email.""" print('Connecting server {0}:{1} with {2}:{3}'.format( self._host, self._port, self._login, self._password)) print('Sending "{0}" to "{1}"'.format(body, email))	[ "def", "send", "(", "self", ",", "email", ",", "body", ")", ":", "print", "(", "'Connecting server {0}:{1} with {2}:{3}'", ".", "format", "(", "self", ".", "_host", ",", "self", ".", "_port", ",", "self", ".", "_login", ",", "self", ".", "_password", ")"...	47.8	0.00823
def process_mgi_relationship_transgene_genes(self, limit=None): """ Here, we have the relationship between MGI transgene alleles, and the non-mouse gene ids that are part of them. We augment the allele with the transgene parts. :param limit: :return: """ ...	[ "def", "process_mgi_relationship_transgene_genes", "(", "self", ",", "limit", "=", "None", ")", ":", "if", "self", ".", "test_mode", ":", "graph", "=", "self", ".", "testgraph", "else", ":", "graph", "=", "self", ".", "graph", "LOG", ".", "info", "(", "\...	38.333333	0.002355
def get_curve_name(self, ecdh=False): """Return correct curve name for device operations.""" if ecdh: return formats.get_ecdh_curve_name(self.curve_name) else: return self.curve_name	[ "def", "get_curve_name", "(", "self", ",", "ecdh", "=", "False", ")", ":", "if", "ecdh", ":", "return", "formats", ".", "get_ecdh_curve_name", "(", "self", ".", "curve_name", ")", "else", ":", "return", "self", ".", "curve_name" ]	37.5	0.008696
def setdefault (self, key, def_val=None): """Update key usage if found and return value, else set and return default.""" if key in self: return self[key] self[key] = def_val return def_val	[ "def", "setdefault", "(", "self", ",", "key", ",", "def_val", "=", "None", ")", ":", "if", "key", "in", "self", ":", "return", "self", "[", "key", "]", "self", "[", "key", "]", "=", "def_val", "return", "def_val" ]	33.428571	0.0125
def managed(name, value=None, host=DEFAULT_HOST, port=DEFAULT_PORT, time=DEFAULT_TIME, min_compress_len=DEFAULT_MIN_COMPRESS_LEN): ''' Manage a memcached key. name The key to manage value The value to set for that key hos...	[ "def", "managed", "(", "name", ",", "value", "=", "None", ",", "host", "=", "DEFAULT_HOST", ",", "port", "=", "DEFAULT_PORT", ",", "time", "=", "DEFAULT_TIME", ",", "min_compress_len", "=", "DEFAULT_MIN_COMPRESS_LEN", ")", ":", "ret", "=", "{", "'name'", "...	25.867647	0.001095
def setattr(self, name, value): # type: (Any, Any, Any) -> Any '''Takes an object, a string, and a value and produces a new object that is a copy of the original but with the attribute called ``name`` set to ``value``. The following equality should hold for your definition: .. code-block:: pyt...	[ "def", "setattr", "(", "self", ",", "name", ",", "value", ")", ":", "# type: (Any, Any, Any) -> Any", "try", ":", "self", ".", "_lens_setattr", "except", "AttributeError", ":", "selfcopy", "=", "copy", ".", "copy", "(", "self", ")", "builtin_setattr", "(", "...	36.057143	0.000772
def starmap(source, func, ordered=True, task_limit=None): """Apply a given function to the unpacked elements of an asynchronous sequence. Each element is unpacked before applying the function. The given function can either be synchronous or asynchronous. The results can either be returned in or ou...	[ "def", "starmap", "(", "source", ",", "func", ",", "ordered", "=", "True", ",", "task_limit", "=", "None", ")", ":", "if", "asyncio", ".", "iscoroutinefunction", "(", "func", ")", ":", "async", "def", "starfunc", "(", "args", ")", ":", "return", "await...	41.26087	0.00103
def as_issue(self): """ :calls: `GET /repos/:owner/:repo/issues/:number <http://developer.github.com/v3/issues>`_ :rtype: :class:`github.Issue.Issue` """ headers, data = self._requester.requestJsonAndCheck( "GET", self.issue_url ) return gi...	[ "def", "as_issue", "(", "self", ")", ":", "headers", ",", "data", "=", "self", ".", "_requester", ".", "requestJsonAndCheck", "(", "\"GET\"", ",", "self", ".", "issue_url", ")", "return", "github", ".", "Issue", ".", "Issue", "(", "self", ".", "_requeste...	37.5	0.010417
def getSizeFromPage(rh, page): """ Convert a size value from page to a number with a magnitude appended. Input: Request Handle Size in page Output: Converted value with a magnitude """ rh.printSysLog("Enter generalUtils.getSizeFromPage") bSize = float(page) * 4096 ...	[ "def", "getSizeFromPage", "(", "rh", ",", "page", ")", ":", "rh", ".", "printSysLog", "(", "\"Enter generalUtils.getSizeFromPage\"", ")", "bSize", "=", "float", "(", "page", ")", "*", "4096", "mSize", "=", "cvtToMag", "(", "rh", ",", "bSize", ")", "rh", ...	23.555556	0.002268
def change_size_for_active_pane(self, up=0, right=0, down=0, left=0): """ Increase the size of the current pane in any of the four directions. """ child = self.active_pane self.change_size_for_pane(child, up=up, right=right, down=down, left=left)	[ "def", "change_size_for_active_pane", "(", "self", ",", "up", "=", "0", ",", "right", "=", "0", ",", "down", "=", "0", ",", "left", "=", "0", ")", ":", "child", "=", "self", ".", "active_pane", "self", ".", "change_size_for_pane", "(", "child", ",", ...	46.833333	0.01049
def verify_password(password, password_hash): """Returns ``True`` if the password matches the supplied hash. :param password: A plaintext password to verify :param password_hash: The expected hash value of the password (usually from your database) """ if use_double_hash(pa...	[ "def", "verify_password", "(", "password", ",", "password_hash", ")", ":", "if", "use_double_hash", "(", "password_hash", ")", ":", "password", "=", "get_hmac", "(", "password", ")", "return", "_pwd_context", ".", "verify", "(", "password", ",", "password_hash",...	38	0.002336
def v1_folder_list(request, kvlclient): '''Retrieves a list of folders for the current user. The route for this endpoint is: ``GET /dossier/v1/folder``. (Temporarily, the "current user" can be set via the ``annotator_id`` query parameter.) The payload returned is a list of folder identifiers. ...	[ "def", "v1_folder_list", "(", "request", ",", "kvlclient", ")", ":", "return", "sorted", "(", "imap", "(", "attrgetter", "(", "'name'", ")", ",", "ifilter", "(", "lambda", "it", ":", "it", ".", "is_folder", "(", ")", ",", "new_folders", "(", "kvlclient",...	37.615385	0.001996
def inverse(self, rhov, time_derivative=False): r"""Fold a vector into a matrix. The input of this function can be a numpy array or a sympy Matrix. If the input is understood to represent the time derivative of a density matrix, then the flag time_derivative must be set to True. ...	[ "def", "inverse", "(", "self", ",", "rhov", ",", "time_derivative", "=", "False", ")", ":", "Ne", "=", "self", ".", "Ne", "Nrho", "=", "self", ".", "Nrho", "IJ", "=", "self", ".", "IJ", "if", "isinstance", "(", "rhov", ",", "np", ".", "ndarray", ...	32.666667	0.000825
def rta_len(self, value): """Length setter.""" self.bytearray[self._get_slicers(0)] = bytearray(c_ushort(value or 0))	[ "def", "rta_len", "(", "self", ",", "value", ")", ":", "self", ".", "bytearray", "[", "self", ".", "_get_slicers", "(", "0", ")", "]", "=", "bytearray", "(", "c_ushort", "(", "value", "or", "0", ")", ")" ]	43.666667	0.015038
def _lits(lexer, varname, nvars): """Return a tuple of DIMACS CNF clause literals.""" tok = _expect_token(lexer, {OP_not, IntegerToken}) if isinstance(tok, IntegerToken) and tok.value == 0: return tuple() else: if isinstance(tok, OP_not): neg = True tok = _expect_...	[ "def", "_lits", "(", "lexer", ",", "varname", ",", "nvars", ")", ":", "tok", "=", "_expect_token", "(", "lexer", ",", "{", "OP_not", ",", "IntegerToken", "}", ")", "if", "isinstance", "(", "tok", ",", "IntegerToken", ")", "and", "tok", ".", "value", ...	30.772727	0.001433
def calibrate(self, counts, calibration, channel): """Perform calibration""" # Convert 16bit counts from netCDF4 file to the original 10bit # GVAR counts by dividing by 32. See [FAQ]. counts = counts / 32. coefs = CALIB_COEFS[self.platform_name][channel] if calibration =...	[ "def", "calibrate", "(", "self", ",", "counts", ",", "calibration", ",", "channel", ")", ":", "# Convert 16bit counts from netCDF4 file to the original 10bit", "# GVAR counts by dividing by 32. See [FAQ].", "counts", "=", "counts", "/", "32.", "coefs", "=", "CALIB_COEFS", ...	45.285714	0.00206
def write_to_socket(self, frame_data): """Write data to the socket. :param str frame_data: :return: """ self._wr_lock.acquire() try: total_bytes_written = 0 bytes_to_send = len(frame_data) while total_bytes_written < bytes_to_send: ...	[ "def", "write_to_socket", "(", "self", ",", "frame_data", ")", ":", "self", ".", "_wr_lock", ".", "acquire", "(", ")", "try", ":", "total_bytes_written", "=", "0", "bytes_to_send", "=", "len", "(", "frame_data", ")", "while", "total_bytes_written", "<", "byt...	37.103448	0.001812
def printPi(self): """ Prints all states state and their steady state probabilities. Not recommended for large state spaces. """ assert self.pi is not None, "Calculate pi before calling printPi()" assert len(self.mapping)>0, "printPi() can only be used in combination with...	[ "def", "printPi", "(", "self", ")", ":", "assert", "self", ".", "pi", "is", "not", "None", ",", "\"Calculate pi before calling printPi()\"", "assert", "len", "(", "self", ".", "mapping", ")", ">", "0", ",", "\"printPi() can only be used in combination with the direc...	53.888889	0.014199
def commit(filename): """Commit (git) a specified file This method does the same than a :: $ git commit -a "message" Keyword Arguments: :filename: (str) -- name of the file to commit Returns: <nothing> """ try: repo = Repo() # gitcmd = repo.git ...	[ "def", "commit", "(", "filename", ")", ":", "try", ":", "repo", "=", "Repo", "(", ")", "# gitcmd = repo.git", "# gitcmd.commit(filename)", "index", "=", "repo", ".", "index", "index", ".", "commit", "(", "\"Updated file: {0}\"", ".", "format", "(", "filename",...	23.571429	0.001942
def extract_ngram_filter(pos_seq, regex=SimpleNP, minlen=1, maxlen=8): """The "FilterFSA" method in Handler et al. 2016. Returns token position spans of valid ngrams.""" ss = coarse_tag_str(pos_seq) def gen(): for s in xrange(len(ss)): for n in xrange(minlen, 1 + min(maxlen, len(ss) - s)): e = s + n s...	[ "def", "extract_ngram_filter", "(", "pos_seq", ",", "regex", "=", "SimpleNP", ",", "minlen", "=", "1", ",", "maxlen", "=", "8", ")", ":", "ss", "=", "coarse_tag_str", "(", "pos_seq", ")", "def", "gen", "(", ")", ":", "for", "s", "in", "xrange", "(", ...	28.5	0.029126
def create_services_from_endpoint(url, catalog, greedy_opt=True): """ Generate service/services from an endpoint. WMS, WMTS, TMS endpoints correspond to a single service. ESRI, CSW endpoints corrispond to many services. :return: imported, message """ # this variable will collect any excepti...	[ "def", "create_services_from_endpoint", "(", "url", ",", "catalog", ",", "greedy_opt", "=", "True", ")", ":", "# this variable will collect any exception message during the routine.", "# will be used in the last step to send a message if \"detected\" var is False.", "messages", "=", ...	39.46371	0.001993
def start_namespace(self, prefix, uri): """ Declare a namespace prefix Use prefix=None to set the default namespace. """ self._g.startPrefixMapping(prefix, uri) self._ns[prefix] = uri	[ "def", "start_namespace", "(", "self", ",", "prefix", ",", "uri", ")", ":", "self", ".", "_g", ".", "startPrefixMapping", "(", "prefix", ",", "uri", ")", "self", ".", "_ns", "[", "prefix", "]", "=", "uri" ]	31.142857	0.008929
def serialiseString(self, s): """ Similar to L{writeString} but does not encode a type byte. """ if type(s) is unicode: s = self.context.getBytesForString(s) l = len(s) if l > 0xffff: self.stream.write_ulong(l) else: self.stre...	[ "def", "serialiseString", "(", "self", ",", "s", ")", ":", "if", "type", "(", "s", ")", "is", "unicode", ":", "s", "=", "self", ".", "context", ".", "getBytesForString", "(", "s", ")", "l", "=", "len", "(", "s", ")", "if", "l", ">", "0xffff", "...	23.6	0.008152
def rmtree_errorhandler(func, path, exc_info): """On Windows, the files in .svn are read-only, so when rmtree() tries to remove them, an exception is thrown. We catch that here, remove the read-only attribute, and hopefully continue without problems.""" exctype, value = exc_info[:2] # On Python 2.4...	[ "def", "rmtree_errorhandler", "(", "func", ",", "path", ",", "exc_info", ")", ":", "exctype", ",", "value", "=", "exc_info", "[", ":", "2", "]", "# On Python 2.4, it will be OSError number 13", "# On all more recent Pythons, it'll be WindowsError number 5", "if", "not", ...	46.705882	0.001235
def check_cousins(self, individual_1_id, individual_2_id): """ Check if two family members are cousins. If two individuals share any grandparents they are cousins. Arguments: individual_1_id (str): The id of an individual individual_2_id (str): ...	[ "def", "check_cousins", "(", "self", ",", "individual_1_id", ",", "individual_2_id", ")", ":", "self", ".", "logger", ".", "debug", "(", "\"Checking if {0} and {1} are cousins\"", ".", "format", "(", "individual_1_id", ",", "individual_2_id", ")", ")", "#TODO check ...	32.380952	0.014286
def use_comparative_book_view(self): """Pass through to provider CommentBookSession.use_comparative_book_view""" self._book_view = COMPARATIVE # self._get_provider_session('comment_book_session') # To make sure the session is tracked for session in self._get_provider_sessions(): ...	[ "def", "use_comparative_book_view", "(", "self", ")", ":", "self", ".", "_book_view", "=", "COMPARATIVE", "# self._get_provider_session('comment_book_session') # To make sure the session is tracked", "for", "session", "in", "self", ".", "_get_provider_sessions", "(", ")", ":"...	47.555556	0.009174
def process_string(self,string): '''Searches the string (or list of strings) for an action word (a :class:`Concept` that has and ``action`` attached to it), then calls the appropriate function with a dictionary of the identified words (according to ``vocab``). For examples, see ``demo.p...	[ "def", "process_string", "(", "self", ",", "string", ")", ":", "item_list", "=", "self", ".", "parse_string", "(", "string", ")", "for", "item", "in", "item_list", ":", "if", "len", "(", "item", ")", ">", "0", "and", "'concept'", "in", "dir", "(", "i...	57.5	0.013699
def from_mime(cls, message, manager): """ Instantiates ``Email`` instance from ``MIMEText`` instance. :param message: ``email.mime.text.MIMEText`` instance. :param manager: :py:class:`EmailManager` instance. :return: :py:class:`Email` """ text, html, attachments ...	[ "def", "from_mime", "(", "cls", ",", "message", ",", "manager", ")", ":", "text", ",", "html", ",", "attachments", "=", "deconstruct_multipart", "(", "message", ")", "subject", "=", "prepare_header", "(", "message", "[", "\"Subject\"", "]", ")", "sender", ...	33.448276	0.002004
def export_complex_gateway_info(node_params, output_element): """ Adds ComplexGateway node attributes to exported XML element :param node_params: dictionary with given complex gateway parameters, :param output_element: object representing BPMN XML 'complexGateway' element. """ ...	[ "def", "export_complex_gateway_info", "(", "node_params", ",", "output_element", ")", ":", "output_element", ".", "set", "(", "consts", ".", "Consts", ".", "gateway_direction", ",", "node_params", "[", "consts", ".", "Consts", ".", "gateway_direction", "]", ")", ...	60.5	0.009772
def make_conditional( self, request_or_environ, accept_ranges=False, complete_length=None ): """Make the response conditional to the request. This method works best if an etag was defined for the response already. The `add_etag` method can be used to do that. If called without eta...	[ "def", "make_conditional", "(", "self", ",", "request_or_environ", ",", "accept_ranges", "=", "False", ",", "complete_length", "=", "None", ")", ":", "environ", "=", "_get_environ", "(", "request_or_environ", ")", "if", "environ", "[", "\"REQUEST_METHOD\"", "]", ...	51.014925	0.001435
def compute_correction_factors(data, true_conductivity, elem_file, elec_file): """Compute correction factors for 2D rhizotron geometries, following Weigand and Kemna, 2017, Biogeosciences https://doi.org/10.5194/bg-14-921-2017 Parameters ---------- data : :py:class:`pandas.DataFrame` m...	[ "def", "compute_correction_factors", "(", "data", ",", "true_conductivity", ",", "elem_file", ",", "elec_file", ")", ":", "settings", "=", "{", "'rho'", ":", "100", ",", "'pha'", ":", "0", ",", "'elem'", ":", "'elem.dat'", ",", "'elec'", ":", "'elec.dat'", ...	26.960784	0.000702
def quaternion_slerp(a, b, t): """Spherical linear interpolation for unit quaternions. This is based on the implementation in the gl-matrix package: https://github.com/toji/gl-matrix """ if a is None: a = unit_quaternion() if b is None: b = unit_quaternion() # calc cosine ...	[ "def", "quaternion_slerp", "(", "a", ",", "b", ",", "t", ")", ":", "if", "a", "is", "None", ":", "a", "=", "unit_quaternion", "(", ")", "if", "b", "is", "None", ":", "b", "=", "unit_quaternion", "(", ")", "# calc cosine", "cosom", "=", "np", ".", ...	28.533333	0.00113
def mavlink_packet(self, m): '''handle an incoming mavlink packet''' if m.get_type() == 'SERIAL_CONTROL': data = m.data[:m.count] s = ''.join(str(chr(x)) for x in data) sys.stdout.write(s)	[ "def", "mavlink_packet", "(", "self", ",", "m", ")", ":", "if", "m", ".", "get_type", "(", ")", "==", "'SERIAL_CONTROL'", ":", "data", "=", "m", ".", "data", "[", ":", "m", ".", "count", "]", "s", "=", "''", ".", "join", "(", "str", "(", "chr",...	39.166667	0.008333
def run(self, input_func=_stdin_): """Run the sections.""" # reset question count self.qcount = 1 for section_name in self.survey: self.run_section(section_name, input_func)	[ "def", "run", "(", "self", ",", "input_func", "=", "_stdin_", ")", ":", "# reset question count", "self", ".", "qcount", "=", "1", "for", "section_name", "in", "self", ".", "survey", ":", "self", ".", "run_section", "(", "section_name", ",", "input_func", ...	35.333333	0.009217
def is_timeout(self): ''' Check if the lapse between initialization and now is more than ``self.timeout``. ''' lapse = datetime.datetime.now() - self.init_time return lapse > datetime.timedelta(seconds=self.timeout)	[ "def", "is_timeout", "(", "self", ")", ":", "lapse", "=", "datetime", ".", "datetime", ".", "now", "(", ")", "-", "self", ".", "init_time", "return", "lapse", ">", "datetime", ".", "timedelta", "(", "seconds", "=", "self", ".", "timeout", ")" ]	41.666667	0.011765
def newsnr(snr, reduced_x2, q=6., n=2.): """Calculate the re-weighted SNR statistic ('newSNR') from given SNR and reduced chi-squared values. See http://arxiv.org/abs/1208.3491 for definition. Previous implementation in glue/ligolw/lsctables.py """ nsnr = numpy.array(snr, ndmin=1, dtype=numpy.float6...	[ "def", "newsnr", "(", "snr", ",", "reduced_x2", ",", "q", "=", "6.", ",", "n", "=", "2.", ")", ":", "nsnr", "=", "numpy", ".", "array", "(", "snr", ",", "ndmin", "=", "1", ",", "dtype", "=", "numpy", ".", "float64", ")", "reduced_x2", "=", "num...	41.764706	0.001377
def uninstall(**kwargs): """Uninstall the current pre-commit hook.""" force = kwargs.get('force') restore_legacy = kwargs.get('restore_legacy') colorama.init(strip=kwargs.get('no_color')) git_dir = current_git_dir() if git_dir is None: output(NOT_GIT_REPO_MSG) exit(1) hoo...	[ "def", "uninstall", "(", "", "", "kwargs", ")", ":", "force", "=", "kwargs", ".", "get", "(", "'force'", ")", "restore_legacy", "=", "kwargs", ".", "get", "(", "'restore_legacy'", ")", "colorama", ".", "init", "(", "strip", "=", "kwargs", ".", "get",...	32	0.001784
def _set_location(instance, location): """Sets a ``Location`` response header. If the location does not start with a slash, the path of the current request is prepended. :param instance: Resource instance (used to access the request and response) :type instance: :class:`webob.resou...	[ "def", "_set_location", "(", "instance", ",", "location", ")", ":", "location", "=", "str", "(", "location", ")", "if", "not", "location", ".", "startswith", "(", "'/'", ")", ":", "location", "=", "urljoin", "(", "instance", ".", "request_path", ".", "rs...	43	0.001898
def next(self): """ Provide the next element of the list. """ if self.idx >= len(self.page_list): raise StopIteration() page = self.page_list[self.idx] self.idx += 1 return page	[ "def", "next", "(", "self", ")", ":", "if", "self", ".", "idx", ">=", "len", "(", "self", ".", "page_list", ")", ":", "raise", "StopIteration", "(", ")", "page", "=", "self", ".", "page_list", "[", "self", ".", "idx", "]", "self", ".", "idx", "+=...	26.333333	0.008163
def create_multidim_plot(parameters, samples, labels=None, mins=None, maxs=None, expected_parameters=None, expected_parameters_color='r', plot_marginal=True, plot_scatter=True, marginal_percentiles=None, contour_percenti...	[ "def", "create_multidim_plot", "(", "parameters", ",", "samples", ",", "labels", "=", "None", ",", "mins", "=", "None", ",", "maxs", "=", "None", ",", "expected_parameters", "=", "None", ",", "expected_parameters_color", "=", "'r'", ",", "plot_marginal", "=", ...	42.366142	0.000091
def collect_trajectories(env, policy_fun, num_trajectories=1, policy="greedy", max_timestep=None, epsilon=0.1): """Collect trajectories with the given policy net and behaviour. Args: env...	[ "def", "collect_trajectories", "(", "env", ",", "policy_fun", ",", "num_trajectories", "=", "1", ",", "policy", "=", "\"greedy\"", ",", "max_timestep", "=", "None", ",", "epsilon", "=", "0.1", ")", ":", "trajectories", "=", "[", "]", "for", "t", "in", "r...	38.632479	0.008628
def Jz(self,**kwargs): """ NAME: Jz PURPOSE: Calculate the vertical action INPUT: +scipy.integrate.quad keywords OUTPUT: J_z(z,vz)/ro/vc + estimate of the error HISTORY: 2012-06-01 - Written - Bovy (IAS) """ ...	[ "def", "Jz", "(", "self", ",", "", "", "kwargs", ")", ":", "if", "hasattr", "(", "self", ",", "'_Jz'", ")", ":", "return", "self", ".", "_Jz", "zmax", "=", "self", ".", "calczmax", "(", ")", "if", "zmax", "==", "-", "9999.99", ":", "return", ...	32.136364	0.019231
def _is_auth_info_available(): """Check if user auth info has been set in environment variables.""" return (_ENDPOINTS_USER_INFO in os.environ or (_ENV_AUTH_EMAIL in os.environ and _ENV_AUTH_DOMAIN in os.environ) or _ENV_USE_OAUTH_SCOPE in os.environ)	[ "def", "_is_auth_info_available", "(", ")", ":", "return", "(", "_ENDPOINTS_USER_INFO", "in", "os", ".", "environ", "or", "(", "_ENV_AUTH_EMAIL", "in", "os", ".", "environ", "and", "_ENV_AUTH_DOMAIN", "in", "os", ".", "environ", ")", "or", "_ENV_USE_OAUTH_SCOPE"...	54.2	0.010909
def wait_until_exit(self): """ Wait until thread exit Used for testing purpose only """ if self._timeout is None: raise Exception("Thread will never exit. Use stop or specify timeout when starting it!") self._thread.join() self.stop()	[ "def", "wait_until_exit", "(", "self", ")", ":", "if", "self", ".", "_timeout", "is", "None", ":", "raise", "Exception", "(", "\"Thread will never exit. Use stop or specify timeout when starting it!\"", ")", "self", ".", "_thread", ".", "join", "(", ")", "self", "...	26.454545	0.009967
def _load(self): """ Load editable settings from the database and return them as a dict. Delete any settings from the database that are no longer registered, and emit a warning if there are settings that are defined in both settings.py and the database. """ from y...	[ "def", "_load", "(", "self", ")", ":", "from", "yacms", ".", "conf", ".", "models", "import", "Setting", "removed_settings", "=", "[", "]", "conflicting_settings", "=", "[", "]", "new_cache", "=", "{", "}", "for", "setting_obj", "in", "Setting", ".", "ob...	40.304348	0.001053
def update_git_repo(): """Because GitPython sucks (cmd.commit() hangs) # pip install GitPython # import git # repo = git.Repo('.') # g = git.cmd.Git('.') # g.pull() # g.push() # g.commit() """ today commands = """ git add docs/*.html git add docs/images/ ...	[ "def", "update_git_repo", "(", ")", ":", "today", "commands", "=", "\"\"\"\n git add docs/.html\n git add docs/images/\n git add docs.ipynb\n git commit -am \"autocommit new docs build {}\"\n git push hobson\n git push origin\n\n git checkout master...	25.025	0.000962
def get(self, request, bot_id, id, format=None): """ Get TelegramBot by id --- serializer: TelegramBotSerializer responseMessages: - code: 401 message: Not authenticated """ return super(TelegramBotDetail, self).get(request, bot_i...	[ "def", "get", "(", "self", ",", "request", ",", "bot_id", ",", "id", ",", "format", "=", "None", ")", ":", "return", "super", "(", "TelegramBotDetail", ",", "self", ")", ".", "get", "(", "request", ",", "bot_id", ",", "id", ",", "format", ")" ]	32.5	0.008982
def dropna(self, drop_nan=True, drop_masked=True, column_names=None): """Create a shallow copy of a DataFrame, with filtering set using select_non_missing. :param drop_nan: drop rows when there is a NaN in any of the columns (will only affect float values) :param drop_masked: drop rows when the...	[ "def", "dropna", "(", "self", ",", "drop_nan", "=", "True", ",", "drop_masked", "=", "True", ",", "column_names", "=", "None", ")", ":", "copy", "=", "self", ".", "copy", "(", ")", "copy", ".", "select_non_missing", "(", "drop_nan", "=", "drop_nan", ",...	58.833333	0.009763
def fetchone(self): """ Fetch next row """ self._check_executed() row = yield self.read_next() if row is None: raise gen.Return(None) self.rownumber += 1 raise gen.Return(row)	[ "def", "fetchone", "(", "self", ")", ":", "self", ".", "_check_executed", "(", ")", "row", "=", "yield", "self", ".", "read_next", "(", ")", "if", "row", "is", "None", ":", "raise", "gen", ".", "Return", "(", "None", ")", "self", ".", "rownumber", ...	28.5	0.008511
def _extract_info_from_useragent(user_agent): """Extract extra informations from user.""" parsed_string = user_agent_parser.Parse(user_agent) return { 'os': parsed_string.get('os', {}).get('family'), 'browser': parsed_string.get('user_agent', {}).get('family'), 'browser_version': par...	[ "def", "_extract_info_from_useragent", "(", "user_agent", ")", ":", "parsed_string", "=", "user_agent_parser", ".", "Parse", "(", "user_agent", ")", "return", "{", "'os'", ":", "parsed_string", ".", "get", "(", "'os'", ",", "{", "}", ")", ".", "get", "(", ...	47.666667	0.002288
def prepare_site_db_and_overrides(): '''Prepare overrides and create _SITE_DB _SITE_DB.keys() need to be ready for filter_translations ''' _SITE_DB.clear() _SITE_DB[_MAIN_LANG] = _MAIN_SITEURL # make sure it works for both root-relative and absolute main_siteurl = '/' if _MAIN_SITEURL == ''...	[ "def", "prepare_site_db_and_overrides", "(", ")", ":", "_SITE_DB", ".", "clear", "(", ")", "_SITE_DB", "[", "_MAIN_LANG", "]", "=", "_MAIN_SITEURL", "# make sure it works for both root-relative and absolute", "main_siteurl", "=", "'/'", "if", "_MAIN_SITEURL", "==", "''"...	46.4	0.001407
def stack_plot(df, x='year', y='value', stack='variable', ax=None, legend=True, title=True, cmap=None, total=None, **kwargs): """Plot data as a stack chart. Parameters ---------- df : pd.DataFrame Data to plot as a long-form data frame x : string, optional ...	[ "def", "stack_plot", "(", "df", ",", "x", "=", "'year'", ",", "y", "=", "'value'", ",", "stack", "=", "'variable'", ",", "ax", "=", "None", ",", "legend", "=", "True", ",", "title", "=", "True", ",", "cmap", "=", "None", ",", "total", "=", "None"...	35.627329	0.00017
def _draw_using_figure(self, figure, axs): """ Draw onto already created figure and axes This is can be used to draw animation frames, or inset plots. It is intended to be used after the key plot has been drawn. Parameters ---------- figure : ~matplotlib...	[ "def", "_draw_using_figure", "(", "self", ",", "figure", ",", "axs", ")", ":", "self", "=", "deepcopy", "(", "self", ")", "self", ".", "_build", "(", ")", "self", ".", "theme", "=", "self", ".", "theme", "or", "theme_get", "(", ")", "self", ".", "f...	28.111111	0.00191
def determine_endpoint_type(features): """ Determines the type of an endpoint :param features: pandas.DataFrame A dataset in a panda's data frame :returns string string with a name of a dataset """ counter={k.name: v for k, v in features.columns.to_series().groupby(features.dtype...	[ "def", "determine_endpoint_type", "(", "features", ")", ":", "counter", "=", "{", "k", ".", "name", ":", "v", "for", "k", ",", "v", "in", "features", ".", "columns", ".", "to_series", "(", ")", ".", "groupby", "(", "features", ".", "dtypes", ")", "."...	37.307692	0.01006
def scan(python_modules, callback, ignore=tuple()): """ Recursively scans `python_modules` for providers registered with :py:mod:`wiring.scanning.register` module and for each one calls `callback` with :term:`specification` as the first argument, and the provider object as the second. Each elem...	[ "def", "scan", "(", "python_modules", ",", "callback", ",", "ignore", "=", "tuple", "(", ")", ")", ":", "scanner", "=", "venusian", ".", "Scanner", "(", "callback", "=", "callback", ")", "for", "python_module", "in", "python_modules", ":", "if", "isinstanc...	39.047619	0.00119
def word_list(sowpods=False, start="", end=""): """Opens the word list file. Args: sowpods: a boolean to declare using the sowpods list or TWL (default) start: a string of starting characters to find anagrams based on end: a string of ending characters to find anagrams based on Yei...	[ "def", "word_list", "(", "sowpods", "=", "False", ",", "start", "=", "\"\"", ",", "end", "=", "\"\"", ")", ":", "location", "=", "os", ".", "path", ".", "join", "(", "os", ".", "path", ".", "dirname", "(", "os", ".", "path", ".", "realpath", "(",...	32.194444	0.000838
def encode(self, pdu): """Encode a tag on the end of the PDU.""" # check for special encoding if (self.tagClass == Tag.contextTagClass): data = 0x08 elif (self.tagClass == Tag.openingTagClass): data = 0x0E elif (self.tagClass == Tag.closingTagClass): ...	[ "def", "encode", "(", "self", ",", "pdu", ")", ":", "# check for special encoding", "if", "(", "self", ".", "tagClass", "==", "Tag", ".", "contextTagClass", ")", ":", "data", "=", "0x08", "elif", "(", "self", ".", "tagClass", "==", "Tag", ".", "openingTa...	28.714286	0.011227
def get_parametric(self, check=True, tolerance=0.001): """ Calculates the parametric equation of the plane that contains the polygon. The output has the form np.array([a, b, c, d]) for: .. math:: ax + by + c*z + d = 0 :param check: Check...	[ "def", "get_parametric", "(", "self", ",", "check", "=", "True", ",", "tolerance", "=", "0.001", ")", ":", "if", "self", ".", "parametric", "is", "None", ":", "# Plane calculation\r", "a", ",", "b", ",", "c", "=", "np", ".", "cross", "(", "self", "."...	42	0.013472

def remove_class(text): """ Remove the CLASS from each DNS record, if present. The only class that gets used today (for all intents and purposes) is 'IN'. """ # see RFC 1035 for list of classes lines = text.split("\n") ret = [] for line in lines: tokens = tokenize_line(line)...

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def estimator_values_df(run_list, estimator_list, **kwargs): """Get a dataframe of estimator values. NB when parallelised the results will not be produced in order (so results from some run number will not nessesarily correspond to that number run in run_list). Parameters ---------- run_li...

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def _AddInitMethod(message_descriptor, cls): """Adds an __init__ method to cls.""" def _GetIntegerEnumValue(enum_type, value): """Convert a string or integer enum value to an integer. If the value is a string, it is converted to the enum value in enum_type with the same name. If the value is not a st...

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def safe_path(path, replacement="_"): """ Replace unsafe path characters with underscores. Do NOT use this with existing paths that cannot be modified, this to to help generate new, clean paths. Supports windows and *nix systems. :param path: path as a string :param replacement: character ...

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def rebuild(self, scene=None): """ This method is where you will rebuild the geometry and \ data for a node. :param scene <QGraphicsScene> || None :return <bool> success """ rect = QRectF(0, 0, self.minimumWidth(), self.minimumHeig...

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def entities(self): """ Access the entities :returns: twilio.rest.authy.v1.service.entity.EntityList :rtype: twilio.rest.authy.v1.service.entity.EntityList """ if self._entities is None: self._entities = EntityList(self._version, service_sid=self._solution['s...

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def _to_dict(self): """Return a json dictionary representing this model.""" _dict = {} if hasattr(self, 'customization_id') and self.customization_id is not None: _dict['customization_id'] = self.customization_id if hasattr(self, 'name') and self.name is no...

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def video_pos(self): """ Returns: (int, int, int, int): Video spatial position (x1, y1, x2, y2) where (x1, y1) is top left, and (x2, y2) is bottom right. All values in px. """ position_string = self._player_interface.VideoPos(ObjectPath('/not...

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def execute_insert_no_results(self, sock_info, run, op_id, acknowledged): """Execute insert, returning no results. """ command = SON([('insert', self.collection.name), ('ordered', self.ordered)]) concern = {'w': int(self.ordered)} command['writeConcern'] = ...

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def save_file_data(self, path): """ Implements the abstract method of the ExternalEditor class. """ try: # just create file with empty text first; this command also creates the whole path to the file filesystem.write_file(os.path.join(path, storage.SCRIPT_FILE), "", creat...

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async def get_deals(self, **params): """Receives all users deals Accepts: - buyer public key """ if params.get("message"): params = json.loads(params.get("message", "{}")) if not params: return {"error":400, "reason":"Missed required fields"} buyer = params.get("buyer") if not buyer: retur...

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def switch(self): """Switch to the hub. This method pauses the current fiber and runs the event loop. The caller should ensure that it has set up appropriate callbacks so that it will get scheduled again, preferably using :class:`switch_back`. In this case then return value of t...

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def _agent_registration(self): """Register this agent with the server. This method registers the cfg agent with the neutron server so hosting devices can be assigned to it. In case the server is not ready to accept registration (it sends a False) then we retry registration for `...

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def authorize(self, cidr_ip=None, ec2_group=None): """ Add a new rule to this DBSecurity group. You need to pass in either a CIDR block to authorize or and EC2 SecurityGroup. @type cidr_ip: string @param cidr_ip: A valid CIDR IP range to authorize @type ec2_grou...

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def set_ghost_status(self, ghost_status): """ Sets ghost RAM status :param ghost_status: state flag indicating status 0 => Do not use IOS ghosting 1 => This is a ghost instance 2 => Use an existing ghost instance """ yield from self._hypervisor.send('vm ...

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def parse(self, character_page): """Parses the DOM and returns character attributes in the main-content area. :type character_page: :class:`bs4.BeautifulSoup` :param character_page: MAL character page's DOM :rtype: dict :return: Character attributes. """ character_info = self.parse_sideba...

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def _thread_main(self): """The entry point for the worker thread. Pulls pending log entries off the queue and writes them in batches to the Cloud Logger. """ _LOGGER.debug("Background thread started.") quit_ = False while True: batch = self._cloud_lo...

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def get_nonzero_random_bytes(length, rnd=default_crypto_random): ''' Accumulate random bit string and remove \0 bytes until the needed length is obtained. ''' result = [] i = 0 while i < length: rnd = rnd.getrandbits(12*length) s = i2osp(rnd, 3*length) s = s.rep...

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def is_first_instance_k8s(current_pod_name=None): """ Returns True if the current pod is the first replica in Kubernetes cluster. """ current_pod_name = current_pod_name or os.environ.get('POD_NAME') if not current_pod_name: raise StackInterrogationException('Pod name not known') namesp...

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def start(self): """ Starts the session. Starting the session will actually get the API key of the current user """ if NURESTSession.session_stack: bambou_logger.critical("Starting a session inside a with statement is not supported.") raise Excep...

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def add_beacon(self, name, beacon_data): ''' Add a beacon item ''' data = {} data[name] = beacon_data if name in self._get_beacons(include_opts=False): comment = 'Cannot update beacon item {0}, ' \ 'because it is configured in pillar.'....

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def run_scan_command( self, server_info: ServerConnectivityInfo, scan_command: PluginScanCommand ) -> PluginScanResult: """Run a single scan command against a server; will block until the scan command has been completed. Args: server_info: The server'...

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def init_board(self): """Init a valid board by given settings. Parameters ---------- mine_map : numpy.ndarray the map that defines the mine 0 is empty, 1 is mine info_map : numpy.ndarray the map that presents to gamer 0-8 is number...

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def should_update(stack): """Tests whether a stack should be submitted for updates to CF. Args: stack (:class:`stacker.stack.Stack`): The stack object to check. Returns: bool: If the stack should be updated, return True. """ if stack.locked: if not stack.force: ...

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def get_item(self, **kwargs): """ Reload context on each access. """ self.reload_context(es_based=False, **kwargs) return super(ItemSubresourceBaseView, self).get_item(**kwargs)

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def loggable(obj): """Return "True" if the obj implements the minimum Logger API required by the 'trace' decorator. """ if isinstance(obj, logging.Logger): return True else: return (inspect.isclass(obj) and inspect.ismethod(getattr(obj, 'debug', None)) ...

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def silhouette_score(self, data, metric='euclidean', sample_size=None, random_state=None, **kwds): """ Computes the mean Silhouette Coefficient of all samples (implicit evaluation) :param data: The data that the clusters are generated from :param metric: the pairwise distance metric ...

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def register(self, schema): """Register input schema class. When registering a schema, all inner schemas are registered as well. :param Schema schema: schema to register. :return: old registered schema. :rtype: type """ result = None uuid = schema.uuid ...

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def build_header( filename, disposition='attachment', filename_compat=None ): """Generate a Content-Disposition header for a given filename. For legacy clients that don't understand the filename* parameter, a filename_compat value may be given. It should either be ascii-only (recommended) or iso-88...

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def correct(self, text: str, srctext=None) -> str: """Automatically apply suggestions to the text.""" return correct(text, self.check(text, srctext))

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def build_geometry_by_shape( feed: "Feed", shape_ids: Optional[List[str]] = None, *, use_utm: bool = False, ) -> Dict: """ Return a dictionary with structure shape_id -> Shapely LineString of shape. Parameters ---------- feed : Feed shape_ids : list IDs of shapes in ...

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def urlencode(data): """A version of `urllib.urlencode` that isn't insane. This only cares that `data` is an iterable of iterables. Each sub-iterable must be of overall length 2, i.e. a name/value pair. Unicode strings will be encoded to UTF-8. This is what Django expects; see `smart_text` in the ...

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def purge (self, strategy = "klogn", keep = None, deleteNonSnapshots = False, **kwargs): """Purge snapshot directory of snapshots according to some strategy, preserving ...

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def createMCMC(config,srcfile,section='source',samples=None): """ Create an MCMC instance """ source = ugali.analysis.source.Source() source.load(srcfile,section=section) loglike = ugali.analysis.loglike.createLoglike(config,source) mcmc = MCMC(config,loglike) if samples is not None: m...

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def _parse_frange_part(frange): """ Internal method: parse a discrete frame range part. Args: frange (str): single part of a frame range as a string (ie "1-100x5") Returns: tuple: (start, end, modifier, chunk) Raises: :class:...

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def pick_trust_for_twisted(netloc, possible): """ Pick the right "trust roots" (certificate authority certificates) for the given server and return it in the form Twisted wants. Kubernetes certificates are often self-signed or otherwise exist outside of the typical certificate authority cartel syst...

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def approve(ctx, _spender='address', _value='uint256', returns=STATUS): """ Standardized Contract API: function approve(address _spender, uint256 _value) returns (bool success) """ ctx.allowances[ctx.msg_sender][_spender] += _value ctx.Approval(ctx.msg_sender, _spender, _value) ...

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def __write_text(self, outfile): """ Write text information into file This method should be called only from ``write_idat`` method or chunk order will be ruined. """ for k, v in self.text.items(): if not isinstance(v, bytes): try: ...

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def rebalance(self): """The genetic rebalancing algorithm runs for a fixed number of generations. Each generation has two phases: exploration and pruning. In exploration, a large set of possible states are found by randomly applying assignment changes to the existing states. In pruning, ...

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def get_url_directory_string(url): """ Determines the url's directory string. :param str url: the url to extract the directory string from :return str: the directory string on the server """ domain = UrlExtractor.get_allowed_domain(url) splitted_url = url.split(...

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def get_cached_parent_for_taxon(self, child_taxon): """If the taxa are being cached, this call will create a the lineage "spike" for taxon child_taxon Expecting child_taxon to have a non-empty _taxonomic_lineage with response dicts that can create an ancestral TaxonWrapper. """ ...

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def send(self, email, body): """Send email.""" print('Connecting server {0}:{1} with {2}:{3}'.format( self._host, self._port, self._login, self._password)) print('Sending "{0}" to "{1}"'.format(body, email))

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def process_mgi_relationship_transgene_genes(self, limit=None): """ Here, we have the relationship between MGI transgene alleles, and the non-mouse gene ids that are part of them. We augment the allele with the transgene parts. :param limit: :return: """ ...

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def get_curve_name(self, ecdh=False): """Return correct curve name for device operations.""" if ecdh: return formats.get_ecdh_curve_name(self.curve_name) else: return self.curve_name

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def setdefault (self, key, def_val=None): """Update key usage if found and return value, else set and return default.""" if key in self: return self[key] self[key] = def_val return def_val

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def managed(name, value=None, host=DEFAULT_HOST, port=DEFAULT_PORT, time=DEFAULT_TIME, min_compress_len=DEFAULT_MIN_COMPRESS_LEN): ''' Manage a memcached key. name The key to manage value The value to set for that key hos...

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def setattr(self, name, value): # type: (Any, Any, Any) -> Any '''Takes an object, a string, and a value and produces a new object that is a copy of the original but with the attribute called ``name`` set to ``value``. The following equality should hold for your definition: .. code-block:: pyt...

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def starmap(source, func, ordered=True, task_limit=None): """Apply a given function to the unpacked elements of an asynchronous sequence. Each element is unpacked before applying the function. The given function can either be synchronous or asynchronous. The results can either be returned in or ou...

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def as_issue(self): """ :calls: `GET /repos/:owner/:repo/issues/:number <http://developer.github.com/v3/issues>`_ :rtype: :class:`github.Issue.Issue` """ headers, data = self._requester.requestJsonAndCheck( "GET", self.issue_url ) return gi...

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def getSizeFromPage(rh, page): """ Convert a size value from page to a number with a magnitude appended. Input: Request Handle Size in page Output: Converted value with a magnitude """ rh.printSysLog("Enter generalUtils.getSizeFromPage") bSize = float(page) * 4096 ...

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def change_size_for_active_pane(self, up=0, right=0, down=0, left=0): """ Increase the size of the current pane in any of the four directions. """ child = self.active_pane self.change_size_for_pane(child, up=up, right=right, down=down, left=left)

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def verify_password(password, password_hash): """Returns ``True`` if the password matches the supplied hash. :param password: A plaintext password to verify :param password_hash: The expected hash value of the password (usually from your database) """ if use_double_hash(pa...

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def v1_folder_list(request, kvlclient): '''Retrieves a list of folders for the current user. The route for this endpoint is: ``GET /dossier/v1/folder``. (Temporarily, the "current user" can be set via the ``annotator_id`` query parameter.) The payload returned is a list of folder identifiers. ...

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def inverse(self, rhov, time_derivative=False): r"""Fold a vector into a matrix. The input of this function can be a numpy array or a sympy Matrix. If the input is understood to represent the time derivative of a density matrix, then the flag time_derivative must be set to True. ...

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def rta_len(self, value): """Length setter.""" self.bytearray[self._get_slicers(0)] = bytearray(c_ushort(value or 0))

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def _lits(lexer, varname, nvars): """Return a tuple of DIMACS CNF clause literals.""" tok = _expect_token(lexer, {OP_not, IntegerToken}) if isinstance(tok, IntegerToken) and tok.value == 0: return tuple() else: if isinstance(tok, OP_not): neg = True tok = _expect_...

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def calibrate(self, counts, calibration, channel): """Perform calibration""" # Convert 16bit counts from netCDF4 file to the original 10bit # GVAR counts by dividing by 32. See [FAQ]. counts = counts / 32. coefs = CALIB_COEFS[self.platform_name][channel] if calibration =...

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def write_to_socket(self, frame_data): """Write data to the socket. :param str frame_data: :return: """ self._wr_lock.acquire() try: total_bytes_written = 0 bytes_to_send = len(frame_data) while total_bytes_written < bytes_to_send: ...

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def printPi(self): """ Prints all states state and their steady state probabilities. Not recommended for large state spaces. """ assert self.pi is not None, "Calculate pi before calling printPi()" assert len(self.mapping)>0, "printPi() can only be used in combination with...

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def commit(filename): """Commit (git) a specified file This method does the same than a :: $ git commit -a "message" Keyword Arguments: :filename: (str) -- name of the file to commit Returns: <nothing> """ try: repo = Repo() # gitcmd = repo.git ...

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def extract_ngram_filter(pos_seq, regex=SimpleNP, minlen=1, maxlen=8): """The "FilterFSA" method in Handler et al. 2016. Returns token position spans of valid ngrams.""" ss = coarse_tag_str(pos_seq) def gen(): for s in xrange(len(ss)): for n in xrange(minlen, 1 + min(maxlen, len(ss) - s)): e = s + n s...

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def create_services_from_endpoint(url, catalog, greedy_opt=True): """ Generate service/services from an endpoint. WMS, WMTS, TMS endpoints correspond to a single service. ESRI, CSW endpoints corrispond to many services. :return: imported, message """ # this variable will collect any excepti...

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def start_namespace(self, prefix, uri): """ Declare a namespace prefix Use prefix=None to set the default namespace. """ self._g.startPrefixMapping(prefix, uri) self._ns[prefix] = uri

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def serialiseString(self, s): """ Similar to L{writeString} but does not encode a type byte. """ if type(s) is unicode: s = self.context.getBytesForString(s) l = len(s) if l > 0xffff: self.stream.write_ulong(l) else: self.stre...

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def rmtree_errorhandler(func, path, exc_info): """On Windows, the files in .svn are read-only, so when rmtree() tries to remove them, an exception is thrown. We catch that here, remove the read-only attribute, and hopefully continue without problems.""" exctype, value = exc_info[:2] # On Python 2.4...

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def check_cousins(self, individual_1_id, individual_2_id): """ Check if two family members are cousins. If two individuals share any grandparents they are cousins. Arguments: individual_1_id (str): The id of an individual individual_2_id (str): ...

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def use_comparative_book_view(self): """Pass through to provider CommentBookSession.use_comparative_book_view""" self._book_view = COMPARATIVE # self._get_provider_session('comment_book_session') # To make sure the session is tracked for session in self._get_provider_sessions(): ...

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def process_string(self,string): '''Searches the string (or list of strings) for an action word (a :class:`Concept` that has and ``action`` attached to it), then calls the appropriate function with a dictionary of the identified words (according to ``vocab``). For examples, see ``demo.p...

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def from_mime(cls, message, manager): """ Instantiates ``Email`` instance from ``MIMEText`` instance. :param message: ``email.mime.text.MIMEText`` instance. :param manager: :py:class:`EmailManager` instance. :return: :py:class:`Email` """ text, html, attachments ...

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def export_complex_gateway_info(node_params, output_element): """ Adds ComplexGateway node attributes to exported XML element :param node_params: dictionary with given complex gateway parameters, :param output_element: object representing BPMN XML 'complexGateway' element. """ ...

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def make_conditional( self, request_or_environ, accept_ranges=False, complete_length=None ): """Make the response conditional to the request. This method works best if an etag was defined for the response already. The `add_etag` method can be used to do that. If called without eta...

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def compute_correction_factors(data, true_conductivity, elem_file, elec_file): """Compute correction factors for 2D rhizotron geometries, following Weigand and Kemna, 2017, Biogeosciences https://doi.org/10.5194/bg-14-921-2017 Parameters ---------- data : :py:class:`pandas.DataFrame` m...

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def quaternion_slerp(a, b, t): """Spherical linear interpolation for unit quaternions. This is based on the implementation in the gl-matrix package: https://github.com/toji/gl-matrix """ if a is None: a = unit_quaternion() if b is None: b = unit_quaternion() # calc cosine ...

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def mavlink_packet(self, m): '''handle an incoming mavlink packet''' if m.get_type() == 'SERIAL_CONTROL': data = m.data[:m.count] s = ''.join(str(chr(x)) for x in data) sys.stdout.write(s)

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def run(self, input_func=_stdin_): """Run the sections.""" # reset question count self.qcount = 1 for section_name in self.survey: self.run_section(section_name, input_func)

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def is_timeout(self): ''' Check if the lapse between initialization and now is more than ``self.timeout``. ''' lapse = datetime.datetime.now() - self.init_time return lapse > datetime.timedelta(seconds=self.timeout)

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def newsnr(snr, reduced_x2, q=6., n=2.): """Calculate the re-weighted SNR statistic ('newSNR') from given SNR and reduced chi-squared values. See http://arxiv.org/abs/1208.3491 for definition. Previous implementation in glue/ligolw/lsctables.py """ nsnr = numpy.array(snr, ndmin=1, dtype=numpy.float6...

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def uninstall(**kwargs): """Uninstall the current pre-commit hook.""" force = kwargs.get('force') restore_legacy = kwargs.get('restore_legacy') colorama.init(strip=kwargs.get('no_color')) git_dir = current_git_dir() if git_dir is None: output(NOT_GIT_REPO_MSG) exit(1) hoo...

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def _set_location(instance, location): """Sets a ``Location`` response header. If the location does not start with a slash, the path of the current request is prepended. :param instance: Resource instance (used to access the request and response) :type instance: :class:`webob.resou...

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def next(self): """ Provide the next element of the list. """ if self.idx >= len(self.page_list): raise StopIteration() page = self.page_list[self.idx] self.idx += 1 return page

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def create_multidim_plot(parameters, samples, labels=None, mins=None, maxs=None, expected_parameters=None, expected_parameters_color='r', plot_marginal=True, plot_scatter=True, marginal_percentiles=None, contour_percenti...

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def collect_trajectories(env, policy_fun, num_trajectories=1, policy="greedy", max_timestep=None, epsilon=0.1): """Collect trajectories with the given policy net and behaviour. Args: env...

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def Jz(self,**kwargs): """ NAME: Jz PURPOSE: Calculate the vertical action INPUT: +scipy.integrate.quad keywords OUTPUT: J_z(z,vz)/ro/vc + estimate of the error HISTORY: 2012-06-01 - Written - Bovy (IAS) """ ...

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def _is_auth_info_available(): """Check if user auth info has been set in environment variables.""" return (_ENDPOINTS_USER_INFO in os.environ or (_ENV_AUTH_EMAIL in os.environ and _ENV_AUTH_DOMAIN in os.environ) or _ENV_USE_OAUTH_SCOPE in os.environ)

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def wait_until_exit(self): """ Wait until thread exit Used for testing purpose only """ if self._timeout is None: raise Exception("Thread will never exit. Use stop or specify timeout when starting it!") self._thread.join() self.stop()

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def _load(self): """ Load editable settings from the database and return them as a dict. Delete any settings from the database that are no longer registered, and emit a warning if there are settings that are defined in both settings.py and the database. """ from y...

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def update_git_repo(): """Because GitPython sucks (cmd.commit() hangs) # pip install GitPython # import git # repo = git.Repo('.') # g = git.cmd.Git('.') # g.pull() # g.push() # g.commit() """ today commands = """ git add docs/*.html git add docs/images/ ...

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def get(self, request, bot_id, id, format=None): """ Get TelegramBot by id --- serializer: TelegramBotSerializer responseMessages: - code: 401 message: Not authenticated """ return super(TelegramBotDetail, self).get(request, bot_i...

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def dropna(self, drop_nan=True, drop_masked=True, column_names=None): """Create a shallow copy of a DataFrame, with filtering set using select_non_missing. :param drop_nan: drop rows when there is a NaN in any of the columns (will only affect float values) :param drop_masked: drop rows when the...

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def fetchone(self): """ Fetch next row """ self._check_executed() row = yield self.read_next() if row is None: raise gen.Return(None) self.rownumber += 1 raise gen.Return(row)

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def _extract_info_from_useragent(user_agent): """Extract extra informations from user.""" parsed_string = user_agent_parser.Parse(user_agent) return { 'os': parsed_string.get('os', {}).get('family'), 'browser': parsed_string.get('user_agent', {}).get('family'), 'browser_version': par...

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def prepare_site_db_and_overrides(): '''Prepare overrides and create _SITE_DB _SITE_DB.keys() need to be ready for filter_translations ''' _SITE_DB.clear() _SITE_DB[_MAIN_LANG] = _MAIN_SITEURL # make sure it works for both root-relative and absolute main_siteurl = '/' if _MAIN_SITEURL == ''...

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def stack_plot(df, x='year', y='value', stack='variable', ax=None, legend=True, title=True, cmap=None, total=None, **kwargs): """Plot data as a stack chart. Parameters ---------- df : pd.DataFrame Data to plot as a long-form data frame x : string, optional ...

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def _draw_using_figure(self, figure, axs): """ Draw onto already created figure and axes This is can be used to draw animation frames, or inset plots. It is intended to be used after the key plot has been drawn. Parameters ---------- figure : ~matplotlib...

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def determine_endpoint_type(features): """ Determines the type of an endpoint :param features: pandas.DataFrame A dataset in a panda's data frame :returns string string with a name of a dataset """ counter={k.name: v for k, v in features.columns.to_series().groupby(features.dtype...

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def scan(python_modules, callback, ignore=tuple()): """ Recursively scans `python_modules` for providers registered with :py:mod:`wiring.scanning.register` module and for each one calls `callback` with :term:`specification` as the first argument, and the provider object as the second. Each elem...

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def word_list(sowpods=False, start="", end=""): """Opens the word list file. Args: sowpods: a boolean to declare using the sowpods list or TWL (default) start: a string of starting characters to find anagrams based on end: a string of ending characters to find anagrams based on Yei...

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def encode(self, pdu): """Encode a tag on the end of the PDU.""" # check for special encoding if (self.tagClass == Tag.contextTagClass): data = 0x08 elif (self.tagClass == Tag.openingTagClass): data = 0x0E elif (self.tagClass == Tag.closingTagClass): ...

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def get_parametric(self, check=True, tolerance=0.001): """ Calculates the parametric equation of the plane that contains the polygon. The output has the form np.array([a, b, c, d]) for: .. math:: a*x + b*y + c*z + d = 0 :param check: Check...

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