kejian/codesearchnet-python-rebalanced · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def _convert_suffix_to_docker_chars(suffix): """Rewrite string so that all characters are valid in a docker name suffix.""" # Docker container names must match: [a-zA-Z0-9][a-zA-Z0-9_.-] accepted_characters = string.ascii_letters + string.digits + '_.-' def label_char_transform(char): if char in accepted_c...	[ "def", "_convert_suffix_to_docker_chars", "(", "suffix", ")", ":", "# Docker container names must match: [a-zA-Z0-9][a-zA-Z0-9_.-]", "accepted_characters", "=", "string", ".", "ascii_letters", "+", "string", ".", "digits", "+", "'_.-'", "def", "label_char_transform", "(", "...	37.454545	0.018957
def add(name, uid=None, gid=None, groups=None, home=None, shell=None, unique=True, fullname='', roomnumber='', workphone='', homephone='', createhome=True, loginclass=None, **kwargs): ''' Add a user to the mi...	[ "def", "add", "(", "name", ",", "uid", "=", "None", ",", "gid", "=", "None", ",", "groups", "=", "None", ",", "home", "=", "None", ",", "shell", "=", "None", ",", "unique", "=", "True", ",", "fullname", "=", "''", ",", "roomnumber", "=", "''", ...	28.2	0.000623
def redirect(location, code=302): """Return a response object (a WSGI application) that, if called, redirects the client to the target location. Supported codes are 301, 302, 303, 305, and 307. 300 is not supported because it's not a real redirect and 304 because it's the answer for a request with a r...	[ "def", "redirect", "(", "location", ",", "code", "=", "302", ")", ":", "from", "werkzeug", ".", "wrappers", "import", "Response", "display_location", "=", "escape", "(", "location", ")", "if", "isinstance", "(", "location", ",", "text_type", ")", ":", "fro...	44.928571	0.000778
def _check_submodule_using_git(self): """ Check if the given path is a git submodule. If so, attempt to initialize and/or update the submodule if needed. This function makes calls to the ``git`` command in subprocesses. The ``_check_submodule_no_git`` option uses pure Python t...	[ "def", "_check_submodule_using_git", "(", "self", ")", ":", "cmd", "=", "[", "'git'", ",", "'submodule'", ",", "'status'", ",", "'--'", ",", "self", ".", "path", "]", "try", ":", "log", ".", "info", "(", "'Running `{0}`; use the --no-git option to disable git '"...	45.653333	0.002001
def __gridconnections(self): """Level-2 parser for gridconnections. pattern: object 2 class gridconnections counts 97 93 99 """ try: tok = self.__consume() except DXParserNoTokens: return if tok.equals('counts'): shape = [] ...	[ "def", "__gridconnections", "(", "self", ")", ":", "try", ":", "tok", "=", "self", ".", "__consume", "(", ")", "except", "DXParserNoTokens", ":", "return", "if", "tok", ".", "equals", "(", "'counts'", ")", ":", "shape", "=", "[", "]", "try", ":", "wh...	33.076923	0.00226
def _init_glyph(self, plot, mapping, properties): """ Returns a Bokeh glyph object. """ properties.pop('legend', None) for prop in ['color', 'alpha']: if prop not in properties: continue pval = properties.pop(prop) line_prop = '...	[ "def", "_init_glyph", "(", "self", ",", "plot", ",", "mapping", ",", "properties", ")", ":", "properties", ".", "pop", "(", "'legend'", ",", "None", ")", "for", "prop", "in", "[", "'color'", ",", "'alpha'", "]", ":", "if", "prop", "not", "in", "prope...	39.1	0.002497
def check_password(password, encoded, setter=None, preferred='default'): """ Return a boolean of whether the raw password matches the three part encoded digest. If setter is specified, it'll be called when you need to regenerate the password. """ if password is None: return False ...	[ "def", "check_password", "(", "password", ",", "encoded", ",", "setter", "=", "None", ",", "preferred", "=", "'default'", ")", ":", "if", "password", "is", "None", ":", "return", "False", "preferred", "=", "bCryptPasswordHasher", "hasher", "=", "bCryptPassword...	37	0.000976
def to_etree(self): """ creates an etree element of a ``SaltLayer`` that mimicks a SaltXMI <layers> element """ nodes_attrib_val = ' '.join('//@nodes.{}'.format(node_id) for node_id in self.nodes) edges_attrib_val = ' '.join('//@edges.{...	[ "def", "to_etree", "(", "self", ")", ":", "nodes_attrib_val", "=", "' '", ".", "join", "(", "'//@nodes.{}'", ".", "format", "(", "node_id", ")", "for", "node_id", "in", "self", ".", "nodes", ")", "edges_attrib_val", "=", "' '", ".", "join", "(", "'//@edg...	42.181818	0.002107
def random_name(num_surnames=2): """ Returns a random person name Arguments: num_surnames -- number of surnames """ a = [] # Prefix if random.random() < _PROB_PREF: a.append(_prefixes[random.randint(0, len(_prefixes) - 1)]) # Forename a.append(_forename...	[ "def", "random_name", "(", "num_surnames", "=", "2", ")", ":", "a", "=", "[", "]", "# Prefix\r", "if", "random", ".", "random", "(", ")", "<", "_PROB_PREF", ":", "a", ".", "append", "(", "_prefixes", "[", "random", ".", "randint", "(", "0", ",", "l...	24.28	0.001585
def load_default_templates(self): """Load the default templates""" for importer, modname, is_pkg in pkgutil.iter_modules(templates.__path__): self.register_template('.'.join((templates.__name__, modname)))	[ "def", "load_default_templates", "(", "self", ")", ":", "for", "importer", ",", "modname", ",", "is_pkg", "in", "pkgutil", ".", "iter_modules", "(", "templates", ".", "__path__", ")", ":", "self", ".", "register_template", "(", "'.'", ".", "join", "(", "("...	57.5	0.012876
def maybe_upcast_for_op(obj): """ Cast non-pandas objects to pandas types to unify behavior of arithmetic and comparison operations. Parameters ---------- obj: object Returns ------- out : object Notes ----- Be careful to call this after determining the `name` attrib...	[ "def", "maybe_upcast_for_op", "(", "obj", ")", ":", "if", "type", "(", "obj", ")", "is", "datetime", ".", "timedelta", ":", "# GH#22390 cast up to Timedelta to rely on Timedelta", "# implementation; otherwise operation against numeric-dtype", "# raises TypeError", "return", ...	37.055556	0.00073
def url(self, url, owner=None, kwargs): """ Create the URL TI object. Args: owner: url: kwargs: Return: """ return URL(self.tcex, url, owner=owner, **kwargs)	[ "def", "url", "(", "self", ",", "url", ",", "owner", "=", "None", ",", "", "", "kwargs", ")", ":", "return", "URL", "(", "self", ".", "tcex", ",", "url", ",", "owner", "=", "owner", ",", "", "", "kwargs", ")" ]	18.153846	0.008065
def uninitialize(cls) -> None: """Removes the ``SIGCHLD`` handler.""" if not cls._initialized: return signal.signal(signal.SIGCHLD, cls._old_sigchld) cls._initialized = False	[ "def", "uninitialize", "(", "cls", ")", "->", "None", ":", "if", "not", "cls", ".", "_initialized", ":", "return", "signal", ".", "signal", "(", "signal", ".", "SIGCHLD", ",", "cls", ".", "_old_sigchld", ")", "cls", ".", "_initialized", "=", "False" ]	35.5	0.009174
def smp_to_dataframe(smp_filename,datetime_format=None): """ load an smp file into a pandas dataframe (stacked in wide format) Parameters ---------- smp_filename : str smp filename to load datetime_format : str should be either "%m/%d/%Y %H:%M:%S" or "%d/%m/%Y %H:%M:%S" If N...	[ "def", "smp_to_dataframe", "(", "smp_filename", ",", "datetime_format", "=", "None", ")", ":", "if", "datetime_format", "is", "not", "None", ":", "date_func", "=", "lambda", "x", ":", "datetime", ".", "strptime", "(", "x", ",", "datetime_format", ")", "else"...	32.172414	0.013528
def rand_str(length, allowed=CHARSET_ALPHA_DIGITS): """Generate fixed-length random string from your allowed character pool. :param length: total length of this string. :param allowed: allowed charset. Example:: >>> import string >>> rand_str(32) H6ExQPNLzb4Vp3YZtfpyzLNPFwdfnw...	[ "def", "rand_str", "(", "length", ",", "allowed", "=", "CHARSET_ALPHA_DIGITS", ")", ":", "res", "=", "list", "(", ")", "for", "_", "in", "range", "(", "length", ")", ":", "res", ".", "append", "(", "random", ".", "choice", "(", "allowed", ")", ")", ...	26.6875	0.002262
def Copy(self, name=None): """Returns a copy of this Cdf. Args: name: string name for the new Cdf """ if name is None: name = self.name return Cdf(list(self.xs), list(self.ps), name)	[ "def", "Copy", "(", "self", ",", "name", "=", "None", ")", ":", "if", "name", "is", "None", ":", "name", "=", "self", ".", "name", "return", "Cdf", "(", "list", "(", "self", ".", "xs", ")", ",", "list", "(", "self", ".", "ps", ")", ",", "name...	26.555556	0.008097
def team_billableInfo(self, **kwargs) -> SlackResponse: """Gets billable users information for the current team.""" self._validate_xoxp_token() return self.api_call("team.billableInfo", http_verb="GET", params=kwargs)	[ "def", "team_billableInfo", "(", "self", ",", "", "", "kwargs", ")", "->", "SlackResponse", ":", "self", ".", "_validate_xoxp_token", "(", ")", "return", "self", ".", "api_call", "(", "\"team.billableInfo\"", ",", "http_verb", "=", "\"GET\"", ",", "params", ...	59.5	0.012448
def generator_by_digest(family, digest_size): """ Return generator by hash generator family name and digest size :param family: name of hash-generator family :return: WHashGeneratorProto class """ for generator_name in WHash.available_generators(family=family): generator = WHash.generator(generator_name)...	[ "def", "generator_by_digest", "(", "family", ",", "digest_size", ")", ":", "for", "generator_name", "in", "WHash", ".", "available_generators", "(", "family", "=", "family", ")", ":", "generator", "=", "WHash", ".", "generator", "(", "generator_name", ")", "if...	36.666667	0.02439
def intervallookup(table, start='start', stop='stop', value=None, include_stop=False): """ Construct an interval lookup for the given table. E.g.:: >>> import petl as etl >>> table = [['start', 'stop', 'value'], ... [1, 4, 'foo'], ... [3, 7, ...	[ "def", "intervallookup", "(", "table", ",", "start", "=", "'start'", ",", "stop", "=", "'stop'", ",", "value", "=", "None", ",", "include_stop", "=", "False", ")", ":", "tree", "=", "tupletree", "(", "table", ",", "start", "=", "start", ",", "stop", ...	29.945946	0.000874
def open(self): """ Open the Sender using the supplied conneciton. If the handler has previously been redirected, the redirect context will be used to create a new handler before opening it. :param connection: The underlying client shared connection. :type: connection: ~...	[ "def", "open", "(", "self", ")", ":", "self", ".", "running", "=", "True", "if", "self", ".", "redirected", ":", "self", ".", "target", "=", "self", ".", "redirected", ".", "address", "self", ".", "_handler", "=", "SendClient", "(", "self", ".", "tar...	39.375	0.002066
def makedirs_safe(fulldir): """Creates a directory if it does not exists. Takes into consideration concurrent access support. Works like the shell's 'mkdir -p'. """ try: if not os.path.exists(fulldir): os.makedirs(fulldir) except OSError as exc: # Python >2.5 import errno if exc.errno == errno.EE...	[ "def", "makedirs_safe", "(", "fulldir", ")", ":", "try", ":", "if", "not", "os", ".", "path", ".", "exists", "(", "fulldir", ")", ":", "os", ".", "makedirs", "(", "fulldir", ")", "except", "OSError", "as", "exc", ":", "# Python >2.5", "import", "errno"...	30.545455	0.023121
def install(name=None, refresh=False, pkgs=None, **kwargs): r''' Install the passed package(s) on the system using winrepo Args: name (str): The name of a single package, or a comma-separated list of packages to install. (no spaces after the commas) refresh (bool):...	[ "def", "install", "(", "name", "=", "None", ",", "refresh", "=", "False", ",", "pkgs", "=", "None", ",", "", "", "kwargs", ")", ":", "ret", "=", "{", "}", "saltenv", "=", "kwargs", ".", "pop", "(", "'saltenv'", ",", "'base'", ")", "refresh", "=...	40.6	0.001122
def user_organization_membership_show(self, user_id, id, **kwargs): "https://developer.zendesk.com/rest_api/docs/core/organization_memberships#show-membership" api_path = "/api/v2/users/{user_id}/organization_memberships/{id}.json" api_path = api_path.format(user_id=user_id, id=id) retur...	[ "def", "user_organization_membership_show", "(", "self", ",", "user_id", ",", "id", ",", "", "", "kwargs", ")", ":", "api_path", "=", "\"/api/v2/users/{user_id}/organization_memberships/{id}.json\"", "api_path", "=", "api_path", ".", "format", "(", "user_id", "=", ...	69.4	0.008547
def get_bg_color(image, bits_per_channel=None): '''Obtains the background color from an image or array of RGB colors by grouping similar colors into bins and finding the most frequent one. ''' assert image.shape[-1] == 3 quantized = quantize(image, bits_per_channel).astype(int) packed = pack_rgb...	[ "def", "get_bg_color", "(", "image", ",", "bits_per_channel", "=", "None", ")", ":", "assert", "image", ".", "shape", "[", "-", "1", "]", "==", "3", "quantized", "=", "quantize", "(", "image", ",", "bits_per_channel", ")", ".", "astype", "(", "int", ")...	25.166667	0.002128
def get_output(script, expanded): """Runs the script and obtains stdin/stderr. :type script: str :type expanded: str :rtype: str \| None """ env = dict(os.environ) env.update(settings.env) is_slow = shlex.split(expanded) in settings.slow_commands with logs.debug_time(u'Call: {}; wi...	[ "def", "get_output", "(", "script", ",", "expanded", ")", ":", "env", "=", "dict", "(", "os", ".", "environ", ")", "env", ".", "update", "(", "settings", ".", "env", ")", "is_slow", "=", "shlex", ".", "split", "(", "expanded", ")", "in", "settings", ...	32.826087	0.001287
def get_global_palette(filenames, options): '''Fetch the global palette for a series of input files by merging their samples together into one large array. ''' input_filenames = [] all_samples = [] if not options.quiet: print('building global palette...') for input_filename in file...	[ "def", "get_global_palette", "(", "filenames", ",", "options", ")", ":", "input_filenames", "=", "[", "]", "all_samples", "=", "[", "]", "if", "not", "options", ".", "quiet", ":", "print", "(", "'building global palette...'", ")", "for", "input_filename", "in"...	23.55	0.001019
def button_state(self): """The button state that triggered this event. For pointer events that are not of type :attr:`~libinput.constant.EventType.POINTER_BUTTON`, this property raises :exc:`AttributeError`. Returns: ~libinput.constant.ButtonState: The button state triggering this event. Raises: ...	[ "def", "button_state", "(", "self", ")", ":", "if", "self", ".", "type", "!=", "EventType", ".", "POINTER_BUTTON", ":", "raise", "AttributeError", "(", "_wrong_prop", ".", "format", "(", "self", ".", "type", ")", ")", "return", "self", ".", "_libinput", ...	28.055556	0.030651
def draw_chimera_embedding(G, args, *kwargs): """Draws an embedding onto the chimera graph G, according to layout. If interaction_edges is not None, then only display the couplers in that list. If embedded_graph is not None, the only display the couplers between chains with intended couplings accord...	[ "def", "draw_chimera_embedding", "(", "G", ",", "", "args", ",", "", "", "kwargs", ")", ":", "draw_embedding", "(", "G", ",", "chimera_layout", "(", "G", ")", ",", "", "args", ",", "", "", "kwargs", ")" ]	46.510638	0.001344
def trim_structure(struct, filtering="cube", n=2): """Remove outlier 'atoms' (aka bins) from a structure. """ X, Y, Z = (struct[:, i] for i in range(3)) if filtering == "sphere": R = (np.std(X)2 + np.std(Y)2 + np.std(Z)*2) (n2) f = (X - np.mean(X))2 + (Y - np.mean(Y))**2 + (...	[ "def", "trim_structure", "(", "struct", ",", "filtering", "=", "\"cube\"", ",", "n", "=", "2", ")", ":", "X", ",", "Y", ",", "Z", "=", "(", "struct", "[", ":", ",", "i", "]", "for", "i", "in", "range", "(", "3", ")", ")", "if", "filtering", "...	32.26087	0.001309
def add_timezone(value, tz=None): """If the value is naive, then the timezone is added to it. If no timezone is given, timezone.get_current_timezone() is used. """ tz = tz or timezone.get_current_timezone() try: if timezone.is_naive(value): return timezone.make_aware(value, tz) ...	[ "def", "add_timezone", "(", "value", ",", "tz", "=", "None", ")", ":", "tz", "=", "tz", "or", "timezone", ".", "get_current_timezone", "(", ")", "try", ":", "if", "timezone", ".", "is_naive", "(", "value", ")", ":", "return", "timezone", ".", "make_awa...	39.153846	0.001919
def writeData(f, data): """ Write a dictionary object to a file :param f: The file to write to :type f: file/string :param data: The data to write to the file :type data: dict """ if not isinstance(data, dict): raise Exception(PyVDF.__ERR_NotDict.format(repr(data))) data = PyV...	[ "def", "writeData", "(", "f", ",", "data", ")", ":", "if", "not", "isinstance", "(", "data", ",", "dict", ")", ":", "raise", "Exception", "(", "PyVDF", ".", "__ERR_NotDict", ".", "format", "(", "repr", "(", "data", ")", ")", ")", "data", "=", "PyVD...	23.291667	0.015464
def get_template_debug(template_name, error): ''' This structure is what Django wants when errors occur in templates. It gives the user a nice stack trace in the error page during debug. ''' # This is taken from mako.exceptions.html_error_template(), which has an issue # in Py3 where files get l...	[ "def", "get_template_debug", "(", "template_name", ",", "error", ")", ":", "# This is taken from mako.exceptions.html_error_template(), which has an issue", "# in Py3 where files get loaded as bytes but `lines = src.split('\\n')` below", "# splits with a string. Not sure if this is a bug or if I...	32.557252	0.002048
def colour(colour, message, bold=False): """ Color a message """ return style(fg=colour, text=message, bold=bold)	[ "def", "colour", "(", "colour", ",", "message", ",", "bold", "=", "False", ")", ":", "return", "style", "(", "fg", "=", "colour", ",", "text", "=", "message", ",", "bold", "=", "bold", ")" ]	39.666667	0.008264
def __data_labels_distances(self, indexed_string, classifier_fn, num_samples, distance_metric='cosine'): """Generates a neighborhood around a prediction. Generates neighborhoo...	[ "def", "__data_labels_distances", "(", "self", ",", "indexed_string", ",", "classifier_fn", ",", "num_samples", ",", "distance_metric", "=", "'cosine'", ")", ":", "def", "distance_fn", "(", "x", ")", ":", "return", "sklearn", ".", "metrics", ".", "pairwise", "...	49.1	0.002396
def _netinfo_openbsd(): ''' Get process information for network connections using fstat ''' ret = {} _fstat_re = re.compile( r'internet(6)? (?:stream tcp 0x\S+ (\S+)\|dgram udp (\S+))' r'(?: [<>=-]+ (\S+))?$' ) out = __salt__['cmd.run']('fstat') for line in out.splitlines(...	[ "def", "_netinfo_openbsd", "(", ")", ":", "ret", "=", "{", "}", "_fstat_re", "=", "re", ".", "compile", "(", "r'internet(6)? (?:stream tcp 0x\\S+ (\\S+)\|dgram udp (\\S+))'", "r'(?: [<>=-]+ (\\S+))?$'", ")", "out", "=", "__salt__", "[", "'cmd.run'", "]", "(", "'fstat...	38.866667	0.000558
def from_xmrs(cls, xmrs, predicate_modifiers=False, **kwargs): """ Instantiate an Eds from an Xmrs (lossy conversion). Args: xmrs (:class:`~delphin.mrs.xmrs.Xmrs`): Xmrs instance to convert from predicate_modifiers (function, bool): function that is ...	[ "def", "from_xmrs", "(", "cls", ",", "xmrs", ",", "predicate_modifiers", "=", "False", ",", "", "", "kwargs", ")", ":", "eps", "=", "xmrs", ".", "eps", "(", ")", "deps", "=", "_find_basic_dependencies", "(", "xmrs", ",", "eps", ")", "# if requested, fi...	44.636364	0.001495
def query(hook=None, api_url=None, data=None): ''' Mattermost object method function to construct and execute on the API URL. :param api_url: The Mattermost API URL :param hook: The Mattermost hook. :param data: The data to be sent for POST method. :return: ...	[ "def", "query", "(", "hook", "=", "None", ",", "api_url", "=", "None", ",", "data", "=", "None", ")", ":", "method", "=", "'POST'", "ret", "=", "{", "'message'", ":", "''", ",", "'res'", ":", "True", "}", "base_url", "=", "_urljoin", "(", "api_url"...	32.840909	0.001344
def chisq(psr,formbats=False): """Return the total chisq for the current timing solution, removing noise-averaged mean residual, and ignoring deleted points.""" if formbats: psr.formbats() res, err = psr.residuals(removemean=False)[psr.deleted == 0], psr.toaerrs[psr.deleted == 0] ...	[ "def", "chisq", "(", "psr", ",", "formbats", "=", "False", ")", ":", "if", "formbats", ":", "psr", ".", "formbats", "(", ")", "res", ",", "err", "=", "psr", ".", "residuals", "(", "removemean", "=", "False", ")", "[", "psr", ".", "deleted", "==", ...	34.5	0.011765
def save(self, filepath=None, overwrite=False, verbose=True): """Save as root of a new file. Parameters ---------- filepath : Path-like object (optional) Filepath to write. If None, file is created using natural_name. overwrite : boolean (optional) Toggle...	[ "def", "save", "(", "self", ",", "filepath", "=", "None", ",", "overwrite", "=", "False", ",", "verbose", "=", "True", ")", ":", "if", "filepath", "is", "None", ":", "filepath", "=", "pathlib", ".", "Path", "(", "\".\"", ")", "/", "self", ".", "nat...	30.533333	0.00141
def _collapse_address_list_recursive(addresses): """Loops through the addresses, collapsing concurrent netblocks. Example: ip1 = IPv4Network('1.1.0.0/24') ip2 = IPv4Network('1.1.1.0/24') ip3 = IPv4Network('1.1.2.0/24') ip4 = IPv4Network('1.1.3.0/24') ip5 = IPv4Network('...	[ "def", "_collapse_address_list_recursive", "(", "addresses", ")", ":", "ret_array", "=", "[", "]", "optimized", "=", "False", "for", "cur_addr", "in", "addresses", ":", "if", "not", "ret_array", ":", "ret_array", ".", "append", "(", "cur_addr", ")", "continue"...	28.466667	0.000755
def do_shell(self, arg): "run a shell commad" print(">", arg) sub_cmd = subprocess.Popen(arg, shell=True, stdout=subprocess.PIPE) print(sub_cmd.communicate()[0])	[ "def", "do_shell", "(", "self", ",", "arg", ")", ":", "print", "(", "\">\"", ",", "arg", ")", "sub_cmd", "=", "subprocess", ".", "Popen", "(", "arg", ",", "shell", "=", "True", ",", "stdout", "=", "subprocess", ".", "PIPE", ")", "print", "(", "sub_...	37.8	0.010363
def tilt(self,R,z,nsigma=None,mc=False,nmc=10000, gl=True,ngl=_DEFAULTNGL,**kwargs): """ NAME: tilt PURPOSE: calculate the tilt of the velocity ellipsoid by marginalizing over velocity INPUT: R - radius at which to calculate this (can be...	[ "def", "tilt", "(", "self", ",", "R", ",", "z", ",", "nsigma", "=", "None", ",", "mc", "=", "False", ",", "nmc", "=", "10000", ",", "gl", "=", "True", ",", "ngl", "=", "_DEFAULTNGL", ",", "", "", "kwargs", ")", ":", "warnings", ".", "warn", ...	42.9875	0.029278
def _linux_iqn(): ''' Return iSCSI IQN from a Linux host. ''' ret = [] initiator = '/etc/iscsi/initiatorname.iscsi' try: with salt.utils.files.fopen(initiator, 'r') as _iscsi: for line in _iscsi: line = line.strip() if line.startswith('Initiat...	[ "def", "_linux_iqn", "(", ")", ":", "ret", "=", "[", "]", "initiator", "=", "'/etc/iscsi/initiatorname.iscsi'", "try", ":", "with", "salt", ".", "utils", ".", "files", ".", "fopen", "(", "initiator", ",", "'r'", ")", "as", "_iscsi", ":", "for", "line", ...	28.722222	0.001873
def apt_add_repository_from_apt_string(apt_string, apt_file): """ adds a new repository file for apt """ apt_file_path = '/etc/apt/sources.list.d/%s' % apt_file if not file_contains(apt_file_path, apt_string.lower(), use_sudo=True): file_append(apt_file_path, apt_string.lower(), use_sudo=True) ...	[ "def", "apt_add_repository_from_apt_string", "(", "apt_string", ",", "apt_file", ")", ":", "apt_file_path", "=", "'/etc/apt/sources.list.d/%s'", "%", "apt_file", "if", "not", "file_contains", "(", "apt_file_path", ",", "apt_string", ".", "lower", "(", ")", ",", "use...	41.4	0.002364
def load_product_class(self, mode): """Load recipe object, according to observing mode""" product_entry = self.products[mode] return self._get_base_class(product_entry)	[ "def", "load_product_class", "(", "self", ",", "mode", ")", ":", "product_entry", "=", "self", ".", "products", "[", "mode", "]", "return", "self", ".", "_get_base_class", "(", "product_entry", ")" ]	31.5	0.010309
def addExtensionArg(self, namespace, key, value): """Add an extension argument to this OpenID authentication request. Use caution when adding arguments, because they will be URL-escaped and appended to the redirect URL, which can easily get quite long. @param namespace:...	[ "def", "addExtensionArg", "(", "self", ",", "namespace", ",", "key", ",", "value", ")", ":", "self", ".", "message", ".", "setArg", "(", "namespace", ",", "key", ",", "value", ")" ]	32.115385	0.002326
def check_job(cls, job_details): """ Check the status of a specfic job """ return check_log(job_details.logfile, cls.string_exited, cls.string_successful)	[ "def", "check_job", "(", "cls", ",", "job_details", ")", ":", "return", "check_log", "(", "job_details", ".", "logfile", ",", "cls", ".", "string_exited", ",", "cls", ".", "string_successful", ")" ]	56	0.017647
def angle(vec1, vec2): """Calculate the angle between two Vector2's""" dotp = Vector2.dot(vec1, vec2) mag1 = vec1.length() mag2 = vec2.length() result = dotp / (mag1 * mag2) return math.acos(result)	[ "def", "angle", "(", "vec1", ",", "vec2", ")", ":", "dotp", "=", "Vector2", ".", "dot", "(", "vec1", ",", "vec2", ")", "mag1", "=", "vec1", ".", "length", "(", ")", "mag2", "=", "vec2", ".", "length", "(", ")", "result", "=", "dotp", "/", "(", ...	34.285714	0.00813
def get_xname(self, var, coords=None): """Get the name of the x-dimension This method gives the name of the x-dimension (which is not necessarily the name of the coordinate if the variable has a coordinate attribute) Parameters ---------- var: xarray.Variables ...	[ "def", "get_xname", "(", "self", ",", "var", ",", "coords", "=", "None", ")", ":", "if", "coords", "is", "not", "None", ":", "coord", "=", "self", ".", "get_variable_by_axis", "(", "var", ",", "'x'", ",", "coords", ")", "if", "coord", "is", "not", ...	34.285714	0.001621
def folder_source(path, folder): """ Returns the filenames and labels for a folder within a path Returns: ------- fnames: a list of the filenames within `folder` all_lbls: a list of all of the labels in `folder`, where the # of labels is determined by the # of directories within `folder` ...	[ "def", "folder_source", "(", "path", ",", "folder", ")", ":", "fnames", ",", "lbls", ",", "all_lbls", "=", "read_dirs", "(", "path", ",", "folder", ")", "lbl2idx", "=", "{", "lbl", ":", "idx", "for", "idx", ",", "lbl", "in", "enumerate", "(", "all_lb...	40.266667	0.008091
def get_header(self, idx, formatted=False): """ Return a list of the variable names at the given indices """ header = self._uname if not formatted else self._fname return [header[x] for x in idx]	[ "def", "get_header", "(", "self", ",", "idx", ",", "formatted", "=", "False", ")", ":", "header", "=", "self", ".", "_uname", "if", "not", "formatted", "else", "self", ".", "_fname", "return", "[", "header", "[", "x", "]", "for", "x", "in", "idx", ...	38.333333	0.008511
def line_intersection(self, point1, point2, tolerance=1e-8): """ Computes the intersection points of a line with a simplex Args: point1, point2 ([float]): Points that determine the line Returns: points where the line intersects the simplex (0, 1, or 2) """...	[ "def", "line_intersection", "(", "self", ",", "point1", ",", "point2", ",", "tolerance", "=", "1e-8", ")", ":", "b1", "=", "self", ".", "bary_coords", "(", "point1", ")", "b2", "=", "self", ".", "bary_coords", "(", "point2", ")", "l", "=", "b1", "-",...	39.933333	0.002445
def Heartbeat(self): """Sends a heartbeat to the Fleetspeak client. If this daemonservice is configured to use heartbeats, clients that don't call this method often enough are considered faulty and are restarted by Fleetspeak. """ heartbeat_msg = common_pb2.Message( message_type="Heartb...	[ "def", "Heartbeat", "(", "self", ")", ":", "heartbeat_msg", "=", "common_pb2", ".", "Message", "(", "message_type", "=", "\"Heartbeat\"", ",", "destination", "=", "common_pb2", ".", "Address", "(", "service_name", "=", "\"system\"", ")", ")", "self", ".", "_...	37.454545	0.00237
def Servers(self,cached=True): """Returns list of server objects, populates if necessary. >>> clc.v2.Servers(["NY1BTDIPHYP0101","NY1BTDIWEB0101"]).Servers() [<clc.APIv2.server.Server object at 0x1065b0d50>, <clc.APIv2.server.Server object at 0x1065b0e50>] >>> print _[0] NY1BTDIPHYP0101 """ if not hasat...	[ "def", "Servers", "(", "self", ",", "cached", "=", "True", ")", ":", "if", "not", "hasattr", "(", "self", ",", "'_servers'", ")", "or", "not", "cached", ":", "self", ".", "_servers", "=", "[", "]", "for", "server", "in", "self", ".", "servers_lst", ...	31.4375	0.03668
def _solve(self, x0, A, l, u, xmin, xmax): """ Solves using Python Interior Point Solver (PIPS). """ s = pips(self._costfcn, x0, A, l, u, xmin, xmax, self._consfcn, self._hessfcn, self.opt) return s	[ "def", "_solve", "(", "self", ",", "x0", ",", "A", ",", "l", ",", "u", ",", "xmin", ",", "xmax", ")", ":", "s", "=", "pips", "(", "self", ".", "_costfcn", ",", "x0", ",", "A", ",", "l", ",", "u", ",", "xmin", ",", "xmax", ",", "self", "."...	40.333333	0.012146
def _group_by_equal_size(obj_list, tot_groups, threshold=pow(2, 32)): """Partition a list of objects evenly and by file size Files are placed according to largest file in the smallest bucket. If the file is larger than the given threshold, then it is placed in a new bucket by itself. :param obj_lis...	[ "def", "_group_by_equal_size", "(", "obj_list", ",", "tot_groups", ",", "threshold", "=", "pow", "(", "2", ",", "32", ")", ")", ":", "sorted_obj_list", "=", "sorted", "(", "[", "(", "obj", "[", "'size'", "]", ",", "obj", ")", "for", "obj", "in", "obj...	41.357143	0.001688
def Lockhart_Martinelli(m, x, rhol, rhog, mul, mug, D, L=1, Re_c=2000): r'''Calculates two-phase pressure drop with the Lockhart and Martinelli (1949) correlation as presented in non-graphical form by Chisholm (1967). .. math:: \Delta P = \Delta P_{l} \phi_{l}^2 .. math:: \phi_l^2 = 1 ...	[ "def", "Lockhart_Martinelli", "(", "m", ",", "x", ",", "rhol", ",", "rhog", ",", "mul", ",", "mug", ",", "D", ",", "L", "=", "1", ",", "Re_c", "=", "2000", ")", ":", "def", "friction_factor", "(", "Re", ")", ":", "# As in the original model", "if", ...	33.755556	0.000426
def actual_original_query_range(self): """ This accounts for hard clipped bases and a query sequence that hasnt been reverse complemented :return: the range covered on the original query sequence :rtype: GenomicRange """ l = self.original_query_sequence_length a = self.alignment_ranges ...	[ "def", "actual_original_query_range", "(", "self", ")", ":", "l", "=", "self", ".", "original_query_sequence_length", "a", "=", "self", ".", "alignment_ranges", "qname", "=", "a", "[", "0", "]", "[", "1", "]", ".", "chr", "qstart", "=", "a", "[", "0", ...	30.210526	0.013514
def find_data_files(package, pattern): """ Include files matching ``pattern`` inside ``package``. Parameters ---------- package : str The package inside which to look for data files pattern : str Pattern (glob-style) to match for the data files (e.g. ``*.dat``). This sup...	[ "def", "find_data_files", "(", "package", ",", "pattern", ")", ":", "return", "glob", ".", "glob", "(", "os", ".", "path", ".", "join", "(", "package", ",", "pattern", ")", ",", "recursive", "=", "True", ")" ]	35.6875	0.001706
def objects(self): """ The objects in this listing. :type: List[:class:`.ObjectInfo`] """ return [ObjectInfo(o, self._instance, self._bucket, self._client) for o in self._proto.object]	[ "def", "objects", "(", "self", ")", ":", "return", "[", "ObjectInfo", "(", "o", ",", "self", ".", "_instance", ",", "self", ".", "_bucket", ",", "self", ".", "_client", ")", "for", "o", "in", "self", ".", "_proto", ".", "object", "]" ]	29.25	0.008299
def _find_best_root(self, covariation=True, force_positive=True, slope=0, **kwarks): ''' Determine the node that, when the tree is rooted on this node, results in the best regression of temporal constraints and root to tip distances. Parameters ---------- infer_gtr : b...	[ "def", "_find_best_root", "(", "self", ",", "covariation", "=", "True", ",", "force_positive", "=", "True", ",", "slope", "=", "0", ",", "", "", "kwarks", ")", ":", "for", "n", "in", "self", ".", "tree", ".", "find_clades", "(", ")", ":", "n", "....	39.869565	0.009585
def set_legend(self): """Create a legend for this product """ leg = super(Coherence, self).set_legend() if leg is not None: leg.set_title('Coherence with:') return leg	[ "def", "set_legend", "(", "self", ")", ":", "leg", "=", "super", "(", "Coherence", ",", "self", ")", ".", "set_legend", "(", ")", "if", "leg", "is", "not", "None", ":", "leg", ".", "set_title", "(", "'Coherence with:'", ")", "return", "leg" ]	30.428571	0.009132
def circular_gaussian_kernel(sd,radius): """Create a 2-d Gaussian convolution kernel sd - standard deviation of the gaussian in pixels radius - build a circular kernel that convolves all points in the circle bounded by this radius """ i,j = np.mgrid[-radius:radius+1,-radius:ra...	[ "def", "circular_gaussian_kernel", "(", "sd", ",", "radius", ")", ":", "i", ",", "j", "=", "np", ".", "mgrid", "[", "-", "radius", ":", "radius", "+", "1", ",", "-", "radius", ":", "radius", "+", "1", "]", ".", "astype", "(", "float", ")", "/", ...	34.8	0.011189
def alerts(self): """ :rtype: twilio.rest.monitor.v1.alert.AlertList """ if self._alerts is None: self._alerts = AlertList(self) return self._alerts	[ "def", "alerts", "(", "self", ")", ":", "if", "self", ".", "_alerts", "is", "None", ":", "self", ".", "_alerts", "=", "AlertList", "(", "self", ")", "return", "self", ".", "_alerts" ]	27.714286	0.01
def escape(s, quote=True): """ Replace special characters "&", "<" and ">" to HTML-safe sequences. If the optional flag quote is true (the default), the quotation mark characters, both double quote (") and single quote (') characters are also translated. """ assert not isinstance(s, bytes), ...	[ "def", "escape", "(", "s", ",", "quote", "=", "True", ")", ":", "assert", "not", "isinstance", "(", "s", ",", "bytes", ")", ",", "'Pass a unicode string'", "if", "quote", ":", "return", "s", ".", "translate", "(", "_escape_map_full", ")", "return", "s", ...	38.909091	0.002283
async def _storeAppt(self, appt): ''' Store a single appointment ''' await self._hivedict.set(appt.iden, appt.pack())	[ "async", "def", "_storeAppt", "(", "self", ",", "appt", ")", ":", "await", "self", ".", "_hivedict", ".", "set", "(", "appt", ".", "iden", ",", "appt", ".", "pack", "(", ")", ")" ]	43.666667	0.015038
def ssh_version(): ''' Returns the version of the installed ssh command ''' # This function needs more granular checks and to be validated against # older versions of ssh ret = subprocess.Popen( ['ssh', '-V'], stdout=subprocess.PIPE, stderr=subprocess.PIPE).co...	[ "def", "ssh_version", "(", ")", ":", "# This function needs more granular checks and to be validated against", "# older versions of ssh", "ret", "=", "subprocess", ".", "Popen", "(", "[", "'ssh'", ",", "'-V'", "]", ",", "stdout", "=", "subprocess", ".", "PIPE", ",", ...	30.095238	0.001534
def _write_var_data_sparse(self, f, zVar, var, dataType, numElems, recVary, oneblock): ''' Writes a VVR and a VXR for this block of sparse data Parameters: f : file The open CDF file zVar : bool True if this ...	[ "def", "_write_var_data_sparse", "(", "self", ",", "f", ",", "zVar", ",", "var", ",", "dataType", ",", "numElems", ",", "recVary", ",", "oneblock", ")", ":", "rec_start", "=", "oneblock", "[", "0", "]", "rec_end", "=", "oneblock", "[", "1", "]", "indat...	34.716049	0.001037
def set_show_all(self, state): """Toggle 'show all files' state""" if state: self.fsmodel.setNameFilters([]) else: self.fsmodel.setNameFilters(self.name_filters)	[ "def", "set_show_all", "(", "self", ",", "state", ")", ":", "if", "state", ":", "self", ".", "fsmodel", ".", "setNameFilters", "(", "[", "]", ")", "else", ":", "self", ".", "fsmodel", ".", "setNameFilters", "(", "self", ".", "name_filters", ")" ]	34.833333	0.009346
def output_pins(self, pins): """Set multiple pins high or low at once. Pins should be a dict of pin name to pin value (HIGH/True for 1, LOW/False for 0). All provided pins will be set to the given values. """ [self._validate_pin(pin) for pin in pins.keys()] # Set each c...	[ "def", "output_pins", "(", "self", ",", "pins", ")", ":", "[", "self", ".", "_validate_pin", "(", "pin", ")", "for", "pin", "in", "pins", ".", "keys", "(", ")", "]", "# Set each changed pin's bit.", "for", "pin", ",", "value", "in", "iter", "(", "pins"...	41.785714	0.008361
def underline(self, msg): """Underline the input""" return click.style(msg, underline=True) if self.colorize else msg	[ "def", "underline", "(", "self", ",", "msg", ")", ":", "return", "click", ".", "style", "(", "msg", ",", "underline", "=", "True", ")", "if", "self", ".", "colorize", "else", "msg" ]	43.666667	0.015038
def compute_upper_limit(mu_in, post, alpha=0.9): """ Returns the upper limit mu_high of confidence level alpha for a posterior distribution post on the given parameter mu. The posterior need not be normalized. """ if 0 < alpha < 1: dp = integral_element(mu_in, post) high_idx = bi...	[ "def", "compute_upper_limit", "(", "mu_in", ",", "post", ",", "alpha", "=", "0.9", ")", ":", "if", "0", "<", "alpha", "<", "1", ":", "dp", "=", "integral_element", "(", "mu_in", ",", "post", ")", "high_idx", "=", "bisect", ".", "bisect_left", "(", "d...	39.210526	0.001311
def _to_deprecated_string(self): """Returns an 'old-style' course id, represented as 'org/course/run'""" return u'/'.join([self.org, self.course, self.run])	[ "def", "_to_deprecated_string", "(", "self", ")", ":", "return", "u'/'", ".", "join", "(", "[", "self", ".", "org", ",", "self", ".", "course", ",", "self", ".", "run", "]", ")" ]	56.666667	0.011628
def create_run(cmd, project, exp, grp): """ Create a new 'run' in the database. This creates a new transaction in the database and creates a new run in this transaction. Afterwards we return both the transaction as well as the run itself. The user is responsible for committing it when the time ...	[ "def", "create_run", "(", "cmd", ",", "project", ",", "exp", ",", "grp", ")", ":", "from", "benchbuild", ".", "utils", "import", "schema", "as", "s", "session", "=", "s", ".", "Session", "(", ")", "run", "=", "s", ".", "Run", "(", "command", "=", ...	30.818182	0.000953
def all_combinations_of_ensembl_genomes(args): """ Use all combinations of species and release versions specified by the commandline arguments to return a list of EnsemblRelease or Genome objects. The results will typically be of type EnsemblRelease unless the --custom-mirror argument was given. ...	[ "def", "all_combinations_of_ensembl_genomes", "(", "args", ")", ":", "species_list", "=", "args", ".", "species", "if", "args", ".", "species", "else", "[", "\"human\"", "]", "release_list", "=", "args", ".", "release", "if", "args", ".", "release", "else", ...	45.595745	0.000914
def setClockFormat(clockFormat, *kwargs): ''' Set the clock format, either 12h or 24h format. CLI Example: .. code-block:: bash salt '' gnome.setClockFormat <12h\|24h> user=<username> ''' if clockFormat != '12h' and clockFormat != '24h': return False _gsession = _GSettin...	[ "def", "setClockFormat", "(", "clockFormat", ",", "", "", "kwargs", ")", ":", "if", "clockFormat", "!=", "'12h'", "and", "clockFormat", "!=", "'24h'", ":", "return", "False", "_gsession", "=", "_GSettings", "(", "user", "=", "kwargs", ".", "get", "(", ...	28.352941	0.002008
def linestring_node_to_line(node, with_depth=False): """ Returns an instance of a Linestring node to :class: openquake.hazardlib.geo.line.Line """ assert "LineString" in node.tag crds = [float(x) for x in node.nodes[0].text.split()] if with_depth: return Line([Point(crds[iloc], crds[...	[ "def", "linestring_node_to_line", "(", "node", ",", "with_depth", "=", "False", ")", ":", "assert", "\"LineString\"", "in", "node", ".", "tag", "crds", "=", "[", "float", "(", "x", ")", "for", "x", "in", "node", ".", "nodes", "[", "0", "]", ".", "tex...	39.615385	0.001898
def get_window(self): """ Returns the object's parent window. Returns None if no window found. """ x = self while not x._parent == None and \ not isinstance(x._parent, Window): x = x._parent return x._parent	[ "def", "get_window", "(", "self", ")", ":", "x", "=", "self", "while", "not", "x", ".", "_parent", "==", "None", "and", "not", "isinstance", "(", "x", ".", "_parent", ",", "Window", ")", ":", "x", "=", "x", ".", "_parent", "return", "x", ".", "_p...	31.222222	0.027682
def schemas(raw=False): """ Return the list of H₂O schemas. :param raw: if True, then the complete response to .../schemas is returned (including the metadata) """ json = _request_or_exit("/3/Metadata/schemas") if raw: return json assert "schemas" in json, "Unexpected result from /3/Metadat...	[ "def", "schemas", "(", "raw", "=", "False", ")", ":", "json", "=", "_request_or_exit", "(", "\"/3/Metadata/schemas\"", ")", "if", "raw", ":", "return", "json", "assert", "\"schemas\"", "in", "json", ",", "\"Unexpected result from /3/Metadata/schemas call\"", "# Simp...	49.212121	0.01087
def start_update(self, draw=None, queues=None): """ Conduct the formerly registered updates This method conducts the updates that have been registered via the :meth:`update` method. You can call this method if the :attr:`no_auto_update` attribute of this instance and the `auto_u...	[ "def", "start_update", "(", "self", ",", "draw", "=", "None", ",", "queues", "=", "None", ")", ":", "if", "self", ".", "plotter", "is", "not", "None", ":", "return", "self", ".", "plotter", ".", "start_update", "(", "draw", "=", "draw", ",", "queues"...	42.571429	0.001312
def _have(self, name=None): """Check if a configure flag is set. If called without argument, it returns all HAVE_* items. Example: {% if have('netinet/ip.h') %}...{% endif %} """ if name is None: return ( (k, v) for k, v in self.env.ite...	[ "def", "_have", "(", "self", ",", "name", "=", "None", ")", ":", "if", "name", "is", "None", ":", "return", "(", "(", "k", ",", "v", ")", "for", "k", ",", "v", "in", "self", ".", "env", ".", "items", "(", ")", "if", "k", ".", "startswith", ...	28.733333	0.008989
def _parseSymbols(self, sections): """Sets a list of symbols in each DYNSYM and SYMTAB section""" for section in sections: strtab = sections[section.header.sh_link] if section.header.sh_type in (int(SHT.DYNSYM), int(SHT.SYMTAB)): section.symbols = self.__parseSymb...	[ "def", "_parseSymbols", "(", "self", ",", "sections", ")", ":", "for", "section", "in", "sections", ":", "strtab", "=", "sections", "[", "section", ".", "header", ".", "sh_link", "]", "if", "section", ".", "header", ".", "sh_type", "in", "(", "int", "(...	58.5	0.008427
def nodePop(ctxt): """Pops the top element node from the node stack """ if ctxt is None: ctxt__o = None else: ctxt__o = ctxt._o ret = libxml2mod.nodePop(ctxt__o) if ret is None:raise treeError('nodePop() failed') return xmlNode(_obj=ret)	[ "def", "nodePop", "(", "ctxt", ")", ":", "if", "ctxt", "is", "None", ":", "ctxt__o", "=", "None", "else", ":", "ctxt__o", "=", "ctxt", ".", "_o", "ret", "=", "libxml2mod", ".", "nodePop", "(", "ctxt__o", ")", "if", "ret", "is", "None", ":", "raise"...	36.428571	0.019157
def get_qcontent(value): """qcontent = qtext / quoted-pair We allow anything except the DQUOTE character, but if we find any ASCII other than the RFC defined printable ASCII an NonPrintableDefect is added to the token's defects list. Any quoted pairs are converted to their unquoted values, so what...	[ "def", "get_qcontent", "(", "value", ")", ":", "ptext", ",", "value", ",", "_", "=", "_get_ptext_to_endchars", "(", "value", ",", "'\"'", ")", "ptext", "=", "ValueTerminal", "(", "ptext", ",", "'ptext'", ")", "_validate_xtext", "(", "ptext", ")", "return",...	38.5	0.001812
def set_status(self, new_status): ''' Set the status of the report. :param new_status: the new status of the report (either PASSED, FAILED or ERROR) ''' if new_status not in Report.allowed_statuses: raise Exception('status must be one of: %s' % (', '.join(Report.allo...	[ "def", "set_status", "(", "self", ",", "new_status", ")", ":", "if", "new_status", "not", "in", "Report", ".", "allowed_statuses", ":", "raise", "Exception", "(", "'status must be one of: %s'", "%", "(", "', '", ".", "join", "(", "Report", ".", "allowed_status...	42.666667	0.010204
def addInstance(self, groundTruth, prediction, record = None, result = None): """Compute and store metric value""" self.value = self.avg(prediction)	[ "def", "addInstance", "(", "self", ",", "groundTruth", ",", "prediction", ",", "record", "=", "None", ",", "result", "=", "None", ")", ":", "self", ".", "value", "=", "self", ".", "avg", "(", "prediction", ")" ]	51.333333	0.032051
def current(sam=False): ''' Get the username that salt-minion is running under. If salt-minion is running as a service it should return the Local System account. If salt is running from a command prompt it should return the username that started the command prompt. .. versionadded:: 2015.5.6 ...	[ "def", "current", "(", "sam", "=", "False", ")", ":", "try", ":", "if", "sam", ":", "user_name", "=", "win32api", ".", "GetUserNameEx", "(", "win32con", ".", "NameSamCompatible", ")", "else", ":", "user_name", "=", "win32api", ".", "GetUserName", "(", ")...	30.230769	0.002465
def parse_yaml_linenumbers(data, filename): """Parses yaml as ansible.utils.parse_yaml but with linenumbers. The line numbers are stored in each node's LINE_NUMBER_KEY key. """ def compose_node(parent, index): # the line number where the previous token has ended (plus empty lines) line...	[ "def", "parse_yaml_linenumbers", "(", "data", ",", "filename", ")", ":", "def", "compose_node", "(", "parent", ",", "index", ")", ":", "# the line number where the previous token has ended (plus empty lines)", "line", "=", "loader", ".", "line", "node", "=", "Composer...	38.475	0.001901
def StoreCSRFCookie(user, response): """Decorator for WSGI handler that inserts CSRF cookie into response.""" csrf_token = GenerateCSRFToken(user, None) response.set_cookie( "csrftoken", csrf_token, max_age=CSRF_TOKEN_DURATION.seconds)	[ "def", "StoreCSRFCookie", "(", "user", ",", "response", ")", ":", "csrf_token", "=", "GenerateCSRFToken", "(", "user", ",", "None", ")", "response", ".", "set_cookie", "(", "\"csrftoken\"", ",", "csrf_token", ",", "max_age", "=", "CSRF_TOKEN_DURATION", ".", "s...	40.5	0.016129
def _run_node(self, node): ''' calc_dict._run_node(node) calculates the results of the given calculation node in the calc_dict's calculation plan and caches the results in the calc_dict. This should only be called by calc_dict itself internally. ''' #print IMap.indent, ('...	[ "def", "_run_node", "(", "self", ",", "node", ")", ":", "#print IMap.indent, ('Node: %s' % node.name) #dbg", "#IMap.indent = ' ' + IMap.indent #dbg", "#", "# We need to pause here and handle caching, if needed.", "res", "=", "None", "if", "(", "'memoize'", "in", "self", ".",...	44.913793	0.009767
def filter_greys_using_image(image, target): """Filter out any values in target not in image :param image: image containing values to appear in filtered image :param target: the image to filter :rtype: 2d :class:`numpy.ndarray` containing only value in image and with the same dimensions ...	[ "def", "filter_greys_using_image", "(", "image", ",", "target", ")", ":", "maskbase", "=", "numpy", ".", "array", "(", "range", "(", "256", ")", ",", "dtype", "=", "numpy", ".", "uint8", ")", "mask", "=", "numpy", ".", "where", "(", "numpy", ".", "in...	41.083333	0.001984
def _already_cutoff_filtered(in_file, filter_type): """Check if we have a pre-existing cutoff-based filter file from previous VQSR failure. """ filter_file = "%s-filter%s.vcf.gz" % (utils.splitext_plus(in_file)[0], filter_type) return utils.file_exists(filter_file)	[ "def", "_already_cutoff_filtered", "(", "in_file", ",", "filter_type", ")", ":", "filter_file", "=", "\"%s-filter%s.vcf.gz\"", "%", "(", "utils", ".", "splitext_plus", "(", "in_file", ")", "[", "0", "]", ",", "filter_type", ")", "return", "utils", ".", "file_e...	55.4	0.010676
def parity_plot(X, Y, model, devmodel, axes_labels=None): """ A standard method of creating parity plots between predicted and experimental values for trained models. Parameters ---------- X: array experimental input data Y: array experimental output data model: model ob...	[ "def", "parity_plot", "(", "X", ",", "Y", ",", "model", ",", "devmodel", ",", "axes_labels", "=", "None", ")", ":", "model_outputs", "=", "Y", ".", "shape", "[", "1", "]", "with", "plt", ".", "style", ".", "context", "(", "'seaborn-whitegrid'", ")", ...	38.490909	0.000461
def apply(self, var, props, reverse=False): """ Apply the VPM to variable var and properties props. Args: var: a variable props: a dictionary mapping properties to values reverse: if `True`, apply the rules in reverse (e.g. from grammar-ex...	[ "def", "apply", "(", "self", ",", "var", ",", "props", ",", "reverse", "=", "False", ")", ":", "vs", ",", "vid", "=", "sort_vid_split", "(", "var", ")", "if", "reverse", ":", "# variable type mapping is disabled in reverse", "# tms = [(b, op, a) for a, op, b in se...	41.170213	0.00101
def _chi2(self, theta, period, tmpid, return_gradient=False): """ Compute the chi2 for the given parameters, period, & template Optionally return the gradient for faster optimization """ template = self.templates[tmpid] phase = (self.t / period - theta[2]) % 1 mo...	[ "def", "_chi2", "(", "self", ",", "theta", ",", "period", ",", "tmpid", ",", "return_gradient", "=", "False", ")", ":", "template", "=", "self", ".", "templates", "[", "tmpid", "]", "phase", "=", "(", "self", ".", "t", "/", "period", "-", "theta", ...	40.1	0.002436
def addUsersToRole(self, rolename, users): """ Assigns a role to multiple users """ params = { "f" : "json", "rolename" : rolename, "users" : users } rURL = self._url + "/roles/addUsersToRole" return self._post(url=rURL, param_dict=params, ...	[ "def", "addUsersToRole", "(", "self", ",", "rolename", ",", "users", ")", ":", "params", "=", "{", "\"f\"", ":", "\"json\"", ",", "\"rolename\"", ":", "rolename", ",", "\"users\"", ":", "users", "}", "rURL", "=", "self", ".", "_url", "+", "\"/roles/addUs...	40.5	0.016097
def devices(self, **params): """ Method for `List Devices from an existing Distribution <https://m2x.att.com/developer/documentation/v2/distribution#List-Devices-from-an-existing-Distribution>`_ endpoint. :param params: Query parameters passed as keyword arguments. View M2X API Docs for listing of avai...	[ "def", "devices", "(", "self", ",", "", "", "params", ")", ":", "return", "DistributionDevice", ".", "list", "(", "self", ".", "api", ",", "distribution_id", "=", "self", ".", "id", ",", "", "", "params", ")" ]	65.272727	0.009615
def check_hints(self, ds): ''' Checks for potentially mislabeled metadata and makes suggestions for how to correct :param netCDF4.Dataset ds: An open netCDF dataset :rtype: list :return: List of results ''' ret_val = [] ret_val.extend(self._check_hint_bo...	[ "def", "check_hints", "(", "self", ",", "ds", ")", ":", "ret_val", "=", "[", "]", "ret_val", ".", "extend", "(", "self", ".", "_check_hint_bounds", "(", "ds", ")", ")", "return", "ret_val" ]	26.230769	0.008499
def cookie_decode(data, key): ''' Verify and decode an encoded string. Return an object or None''' if isinstance(data, unicode): data = data.encode('ascii') #2to3 hack if cookie_is_encoded(data): sig, msg = data.split(u'?'.encode('ascii'),1) #2to3 hack if sig[1:] == base64.b64encode(hmac.new...	[ "def", "cookie_decode", "(", "data", ",", "key", ")", ":", "if", "isinstance", "(", "data", ",", "unicode", ")", ":", "data", "=", "data", ".", "encode", "(", "'ascii'", ")", "#2to3 hack", "if", "cookie_is_encoded", "(", "data", ")", ":", "sig", ",", ...	50.5	0.019465
def _CheckLine(self, line): """Passes the line through each rule until a match is made. Args: line: A string, the current input line. """ for rule in self._cur_state: matched = self._CheckRule(rule, line) if matched: for value in matched.groupdict(): self._AssignVar(...	[ "def", "_CheckLine", "(", "self", ",", "line", ")", ":", "for", "rule", "in", "self", ".", "_cur_state", ":", "matched", "=", "self", ".", "_CheckRule", "(", "rule", ",", "line", ")", "if", "matched", ":", "for", "value", "in", "matched", ".", "group...	32.578947	0.012559

def _convert_suffix_to_docker_chars(suffix): """Rewrite string so that all characters are valid in a docker name suffix.""" # Docker container names must match: [a-zA-Z0-9][a-zA-Z0-9_.-] accepted_characters = string.ascii_letters + string.digits + '_.-' def label_char_transform(char): if char in accepted_c...

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37.454545

0.018957

def add(name, uid=None, gid=None, groups=None, home=None, shell=None, unique=True, fullname='', roomnumber='', workphone='', homephone='', createhome=True, loginclass=None, **kwargs): ''' Add a user to the mi...

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def redirect(location, code=302): """Return a response object (a WSGI application) that, if called, redirects the client to the target location. Supported codes are 301, 302, 303, 305, and 307. 300 is not supported because it's not a real redirect and 304 because it's the answer for a request with a r...

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def _check_submodule_using_git(self): """ Check if the given path is a git submodule. If so, attempt to initialize and/or update the submodule if needed. This function makes calls to the ``git`` command in subprocesses. The ``_check_submodule_no_git`` option uses pure Python t...

[ "def", "_check_submodule_using_git", "(", "self", ")", ":", "cmd", "=", "[", "'git'", ",", "'submodule'", ",", "'status'", ",", "'--'", ",", "self", ".", "path", "]", "try", ":", "log", ".", "info", "(", "'Running `{0}`; use the --no-git option to disable git '"...

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def __gridconnections(self): """Level-2 parser for gridconnections. pattern: object 2 class gridconnections counts 97 93 99 """ try: tok = self.__consume() except DXParserNoTokens: return if tok.equals('counts'): shape = [] ...

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def _init_glyph(self, plot, mapping, properties): """ Returns a Bokeh glyph object. """ properties.pop('legend', None) for prop in ['color', 'alpha']: if prop not in properties: continue pval = properties.pop(prop) line_prop = '...

[ "def", "_init_glyph", "(", "self", ",", "plot", ",", "mapping", ",", "properties", ")", ":", "properties", ".", "pop", "(", "'legend'", ",", "None", ")", "for", "prop", "in", "[", "'color'", ",", "'alpha'", "]", ":", "if", "prop", "not", "in", "prope...

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def check_password(password, encoded, setter=None, preferred='default'): """ Return a boolean of whether the raw password matches the three part encoded digest. If setter is specified, it'll be called when you need to regenerate the password. """ if password is None: return False ...

[ "def", "check_password", "(", "password", ",", "encoded", ",", "setter", "=", "None", ",", "preferred", "=", "'default'", ")", ":", "if", "password", "is", "None", ":", "return", "False", "preferred", "=", "bCryptPasswordHasher", "hasher", "=", "bCryptPassword...

37

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def to_etree(self): """ creates an etree element of a ``SaltLayer`` that mimicks a SaltXMI <layers> element """ nodes_attrib_val = ' '.join('//@nodes.{}'.format(node_id) for node_id in self.nodes) edges_attrib_val = ' '.join('//@edges.{...

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42.181818

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def random_name(num_surnames=2): """ Returns a random person name Arguments: num_surnames -- number of surnames """ a = [] # Prefix if random.random() < _PROB_PREF: a.append(_prefixes[random.randint(0, len(_prefixes) - 1)]) # Forename a.append(_forename...

[ "def", "random_name", "(", "num_surnames", "=", "2", ")", ":", "a", "=", "[", "]", "# Prefix\r", "if", "random", ".", "random", "(", ")", "<", "_PROB_PREF", ":", "a", ".", "append", "(", "_prefixes", "[", "random", ".", "randint", "(", "0", ",", "l...

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def load_default_templates(self): """Load the default templates""" for importer, modname, is_pkg in pkgutil.iter_modules(templates.__path__): self.register_template('.'.join((templates.__name__, modname)))

[ "def", "load_default_templates", "(", "self", ")", ":", "for", "importer", ",", "modname", ",", "is_pkg", "in", "pkgutil", ".", "iter_modules", "(", "templates", ".", "__path__", ")", ":", "self", ".", "register_template", "(", "'.'", ".", "join", "(", "("...

57.5

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def maybe_upcast_for_op(obj): """ Cast non-pandas objects to pandas types to unify behavior of arithmetic and comparison operations. Parameters ---------- obj: object Returns ------- out : object Notes ----- Be careful to call this *after* determining the `name` attrib...

[ "def", "maybe_upcast_for_op", "(", "obj", ")", ":", "if", "type", "(", "obj", ")", "is", "datetime", ".", "timedelta", ":", "# GH#22390 cast up to Timedelta to rely on Timedelta", "# implementation; otherwise operation against numeric-dtype", "# raises TypeError", "return", ...

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def url(self, url, owner=None, **kwargs): """ Create the URL TI object. Args: owner: url: **kwargs: Return: """ return URL(self.tcex, url, owner=owner, **kwargs)

[ "def", "url", "(", "self", ",", "url", ",", "owner", "=", "None", ",", "*", "*", "kwargs", ")", ":", "return", "URL", "(", "self", ".", "tcex", ",", "url", ",", "owner", "=", "owner", ",", "*", "*", "kwargs", ")" ]

18.153846

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def uninitialize(cls) -> None: """Removes the ``SIGCHLD`` handler.""" if not cls._initialized: return signal.signal(signal.SIGCHLD, cls._old_sigchld) cls._initialized = False

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35.5

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def smp_to_dataframe(smp_filename,datetime_format=None): """ load an smp file into a pandas dataframe (stacked in wide format) Parameters ---------- smp_filename : str smp filename to load datetime_format : str should be either "%m/%d/%Y %H:%M:%S" or "%d/%m/%Y %H:%M:%S" If N...

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def rand_str(length, allowed=CHARSET_ALPHA_DIGITS): """Generate fixed-length random string from your allowed character pool. :param length: total length of this string. :param allowed: allowed charset. Example:: >>> import string >>> rand_str(32) H6ExQPNLzb4Vp3YZtfpyzLNPFwdfnw...

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26.6875

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def Copy(self, name=None): """Returns a copy of this Cdf. Args: name: string name for the new Cdf """ if name is None: name = self.name return Cdf(list(self.xs), list(self.ps), name)

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26.555556

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def team_billableInfo(self, **kwargs) -> SlackResponse: """Gets billable users information for the current team.""" self._validate_xoxp_token() return self.api_call("team.billableInfo", http_verb="GET", params=kwargs)

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59.5

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def generator_by_digest(family, digest_size): """ Return generator by hash generator family name and digest size :param family: name of hash-generator family :return: WHashGeneratorProto class """ for generator_name in WHash.available_generators(family=family): generator = WHash.generator(generator_name)...

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36.666667

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def intervallookup(table, start='start', stop='stop', value=None, include_stop=False): """ Construct an interval lookup for the given table. E.g.:: >>> import petl as etl >>> table = [['start', 'stop', 'value'], ... [1, 4, 'foo'], ... [3, 7, ...

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29.945946

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def open(self): """ Open the Sender using the supplied conneciton. If the handler has previously been redirected, the redirect context will be used to create a new handler before opening it. :param connection: The underlying client shared connection. :type: connection: ~...

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39.375

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def makedirs_safe(fulldir): """Creates a directory if it does not exists. Takes into consideration concurrent access support. Works like the shell's 'mkdir -p'. """ try: if not os.path.exists(fulldir): os.makedirs(fulldir) except OSError as exc: # Python >2.5 import errno if exc.errno == errno.EE...

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30.545455

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def install(name=None, refresh=False, pkgs=None, **kwargs): r''' Install the passed package(s) on the system using winrepo Args: name (str): The name of a single package, or a comma-separated list of packages to install. (no spaces after the commas) refresh (bool):...

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def user_organization_membership_show(self, user_id, id, **kwargs): "https://developer.zendesk.com/rest_api/docs/core/organization_memberships#show-membership" api_path = "/api/v2/users/{user_id}/organization_memberships/{id}.json" api_path = api_path.format(user_id=user_id, id=id) retur...

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69.4

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def get_bg_color(image, bits_per_channel=None): '''Obtains the background color from an image or array of RGB colors by grouping similar colors into bins and finding the most frequent one. ''' assert image.shape[-1] == 3 quantized = quantize(image, bits_per_channel).astype(int) packed = pack_rgb...

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def get_output(script, expanded): """Runs the script and obtains stdin/stderr. :type script: str :type expanded: str :rtype: str | None """ env = dict(os.environ) env.update(settings.env) is_slow = shlex.split(expanded) in settings.slow_commands with logs.debug_time(u'Call: {}; wi...

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32.826087

0.001287

def get_global_palette(filenames, options): '''Fetch the global palette for a series of input files by merging their samples together into one large array. ''' input_filenames = [] all_samples = [] if not options.quiet: print('building global palette...') for input_filename in file...

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23.55

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def button_state(self): """The button state that triggered this event. For pointer events that are not of type :attr:`~libinput.constant.EventType.POINTER_BUTTON`, this property raises :exc:`AttributeError`. Returns: ~libinput.constant.ButtonState: The button state triggering this event. Raises: ...

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28.055556

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def draw_chimera_embedding(G, *args, **kwargs): """Draws an embedding onto the chimera graph G, according to layout. If interaction_edges is not None, then only display the couplers in that list. If embedded_graph is not None, the only display the couplers between chains with intended couplings accord...

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46.510638

0.001344

def trim_structure(struct, filtering="cube", n=2): """Remove outlier 'atoms' (aka bins) from a structure. """ X, Y, Z = (struct[:, i] for i in range(3)) if filtering == "sphere": R = (np.std(X)**2 + np.std(Y)**2 + np.std(Z)**2) * (n**2) f = (X - np.mean(X))**2 + (Y - np.mean(Y))**2 + (...

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def add_timezone(value, tz=None): """If the value is naive, then the timezone is added to it. If no timezone is given, timezone.get_current_timezone() is used. """ tz = tz or timezone.get_current_timezone() try: if timezone.is_naive(value): return timezone.make_aware(value, tz) ...

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def writeData(f, data): """ Write a dictionary object to a file :param f: The file to write to :type f: file/string :param data: The data to write to the file :type data: dict """ if not isinstance(data, dict): raise Exception(PyVDF.__ERR_NotDict.format(repr(data))) data = PyV...

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def get_template_debug(template_name, error): ''' This structure is what Django wants when errors occur in templates. It gives the user a nice stack trace in the error page during debug. ''' # This is taken from mako.exceptions.html_error_template(), which has an issue # in Py3 where files get l...

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def colour(colour, message, bold=False): """ Color a message """ return style(fg=colour, text=message, bold=bold)

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def __data_labels_distances(self, indexed_string, classifier_fn, num_samples, distance_metric='cosine'): """Generates a neighborhood around a prediction. Generates neighborhoo...

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def _netinfo_openbsd(): ''' Get process information for network connections using fstat ''' ret = {} _fstat_re = re.compile( r'internet(6)? (?:stream tcp 0x\S+ (\S+)|dgram udp (\S+))' r'(?: [<>=-]+ (\S+))?$' ) out = __salt__['cmd.run']('fstat') for line in out.splitlines(...

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def from_xmrs(cls, xmrs, predicate_modifiers=False, **kwargs): """ Instantiate an Eds from an Xmrs (lossy conversion). Args: xmrs (:class:`~delphin.mrs.xmrs.Xmrs`): Xmrs instance to convert from predicate_modifiers (function, bool): function that is ...

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def query(hook=None, api_url=None, data=None): ''' Mattermost object method function to construct and execute on the API URL. :param api_url: The Mattermost API URL :param hook: The Mattermost hook. :param data: The data to be sent for POST method. :return: ...

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def chisq(psr,formbats=False): """Return the total chisq for the current timing solution, removing noise-averaged mean residual, and ignoring deleted points.""" if formbats: psr.formbats() res, err = psr.residuals(removemean=False)[psr.deleted == 0], psr.toaerrs[psr.deleted == 0] ...

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def save(self, filepath=None, overwrite=False, verbose=True): """Save as root of a new file. Parameters ---------- filepath : Path-like object (optional) Filepath to write. If None, file is created using natural_name. overwrite : boolean (optional) Toggle...

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def _collapse_address_list_recursive(addresses): """Loops through the addresses, collapsing concurrent netblocks. Example: ip1 = IPv4Network('1.1.0.0/24') ip2 = IPv4Network('1.1.1.0/24') ip3 = IPv4Network('1.1.2.0/24') ip4 = IPv4Network('1.1.3.0/24') ip5 = IPv4Network('...

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28.466667

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def do_shell(self, arg): "run a shell commad" print(">", arg) sub_cmd = subprocess.Popen(arg, shell=True, stdout=subprocess.PIPE) print(sub_cmd.communicate()[0])

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def tilt(self,R,z,nsigma=None,mc=False,nmc=10000, gl=True,ngl=_DEFAULTNGL,**kwargs): """ NAME: tilt PURPOSE: calculate the tilt of the velocity ellipsoid by marginalizing over velocity INPUT: R - radius at which to calculate this (can be...

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def _linux_iqn(): ''' Return iSCSI IQN from a Linux host. ''' ret = [] initiator = '/etc/iscsi/initiatorname.iscsi' try: with salt.utils.files.fopen(initiator, 'r') as _iscsi: for line in _iscsi: line = line.strip() if line.startswith('Initiat...

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def apt_add_repository_from_apt_string(apt_string, apt_file): """ adds a new repository file for apt """ apt_file_path = '/etc/apt/sources.list.d/%s' % apt_file if not file_contains(apt_file_path, apt_string.lower(), use_sudo=True): file_append(apt_file_path, apt_string.lower(), use_sudo=True) ...

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def load_product_class(self, mode): """Load recipe object, according to observing mode""" product_entry = self.products[mode] return self._get_base_class(product_entry)

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def addExtensionArg(self, namespace, key, value): """Add an extension argument to this OpenID authentication request. Use caution when adding arguments, because they will be URL-escaped and appended to the redirect URL, which can easily get quite long. @param namespace:...

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def check_job(cls, job_details): """ Check the status of a specfic job """ return check_log(job_details.logfile, cls.string_exited, cls.string_successful)

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def angle(vec1, vec2): """Calculate the angle between two Vector2's""" dotp = Vector2.dot(vec1, vec2) mag1 = vec1.length() mag2 = vec2.length() result = dotp / (mag1 * mag2) return math.acos(result)

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def get_xname(self, var, coords=None): """Get the name of the x-dimension This method gives the name of the x-dimension (which is not necessarily the name of the coordinate if the variable has a coordinate attribute) Parameters ---------- var: xarray.Variables ...

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def folder_source(path, folder): """ Returns the filenames and labels for a folder within a path Returns: ------- fnames: a list of the filenames within `folder` all_lbls: a list of all of the labels in `folder`, where the # of labels is determined by the # of directories within `folder` ...

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def get_header(self, idx, formatted=False): """ Return a list of the variable names at the given indices """ header = self._uname if not formatted else self._fname return [header[x] for x in idx]

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def line_intersection(self, point1, point2, tolerance=1e-8): """ Computes the intersection points of a line with a simplex Args: point1, point2 ([float]): Points that determine the line Returns: points where the line intersects the simplex (0, 1, or 2) """...

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def Heartbeat(self): """Sends a heartbeat to the Fleetspeak client. If this daemonservice is configured to use heartbeats, clients that don't call this method often enough are considered faulty and are restarted by Fleetspeak. """ heartbeat_msg = common_pb2.Message( message_type="Heartb...

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def Servers(self,cached=True): """Returns list of server objects, populates if necessary. >>> clc.v2.Servers(["NY1BTDIPHYP0101","NY1BTDIWEB0101"]).Servers() [<clc.APIv2.server.Server object at 0x1065b0d50>, <clc.APIv2.server.Server object at 0x1065b0e50>] >>> print _[0] NY1BTDIPHYP0101 """ if not hasat...

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def _solve(self, x0, A, l, u, xmin, xmax): """ Solves using Python Interior Point Solver (PIPS). """ s = pips(self._costfcn, x0, A, l, u, xmin, xmax, self._consfcn, self._hessfcn, self.opt) return s

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40.333333

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def _group_by_equal_size(obj_list, tot_groups, threshold=pow(2, 32)): """Partition a list of objects evenly and by file size Files are placed according to largest file in the smallest bucket. If the file is larger than the given threshold, then it is placed in a new bucket by itself. :param obj_lis...

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def Lockhart_Martinelli(m, x, rhol, rhog, mul, mug, D, L=1, Re_c=2000): r'''Calculates two-phase pressure drop with the Lockhart and Martinelli (1949) correlation as presented in non-graphical form by Chisholm (1967). .. math:: \Delta P = \Delta P_{l} \phi_{l}^2 .. math:: \phi_l^2 = 1 ...

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def actual_original_query_range(self): """ This accounts for hard clipped bases and a query sequence that hasnt been reverse complemented :return: the range covered on the original query sequence :rtype: GenomicRange """ l = self.original_query_sequence_length a = self.alignment_ranges ...

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def find_data_files(package, pattern): """ Include files matching ``pattern`` inside ``package``. Parameters ---------- package : str The package inside which to look for data files pattern : str Pattern (glob-style) to match for the data files (e.g. ``*.dat``). This sup...

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def objects(self): """ The objects in this listing. :type: List[:class:`.ObjectInfo`] """ return [ObjectInfo(o, self._instance, self._bucket, self._client) for o in self._proto.object]

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def _find_best_root(self, covariation=True, force_positive=True, slope=0, **kwarks): ''' Determine the node that, when the tree is rooted on this node, results in the best regression of temporal constraints and root to tip distances. Parameters ---------- infer_gtr : b...

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def set_legend(self): """Create a legend for this product """ leg = super(Coherence, self).set_legend() if leg is not None: leg.set_title('Coherence with:') return leg

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def circular_gaussian_kernel(sd,radius): """Create a 2-d Gaussian convolution kernel sd - standard deviation of the gaussian in pixels radius - build a circular kernel that convolves all points in the circle bounded by this radius """ i,j = np.mgrid[-radius:radius+1,-radius:ra...

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def alerts(self): """ :rtype: twilio.rest.monitor.v1.alert.AlertList """ if self._alerts is None: self._alerts = AlertList(self) return self._alerts

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def escape(s, quote=True): """ Replace special characters "&", "<" and ">" to HTML-safe sequences. If the optional flag quote is true (the default), the quotation mark characters, both double quote (") and single quote (') characters are also translated. """ assert not isinstance(s, bytes), ...

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38.909091

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async def _storeAppt(self, appt): ''' Store a single appointment ''' await self._hivedict.set(appt.iden, appt.pack())

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43.666667

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def ssh_version(): ''' Returns the version of the installed ssh command ''' # This function needs more granular checks and to be validated against # older versions of ssh ret = subprocess.Popen( ['ssh', '-V'], stdout=subprocess.PIPE, stderr=subprocess.PIPE).co...

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def _write_var_data_sparse(self, f, zVar, var, dataType, numElems, recVary, oneblock): ''' Writes a VVR and a VXR for this block of sparse data Parameters: f : file The open CDF file zVar : bool True if this ...

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def set_show_all(self, state): """Toggle 'show all files' state""" if state: self.fsmodel.setNameFilters([]) else: self.fsmodel.setNameFilters(self.name_filters)

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def output_pins(self, pins): """Set multiple pins high or low at once. Pins should be a dict of pin name to pin value (HIGH/True for 1, LOW/False for 0). All provided pins will be set to the given values. """ [self._validate_pin(pin) for pin in pins.keys()] # Set each c...

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def underline(self, msg): """Underline the input""" return click.style(msg, underline=True) if self.colorize else msg

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def compute_upper_limit(mu_in, post, alpha=0.9): """ Returns the upper limit mu_high of confidence level alpha for a posterior distribution post on the given parameter mu. The posterior need not be normalized. """ if 0 < alpha < 1: dp = integral_element(mu_in, post) high_idx = bi...

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39.210526

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def _to_deprecated_string(self): """Returns an 'old-style' course id, represented as 'org/course/run'""" return u'/'.join([self.org, self.course, self.run])

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def create_run(cmd, project, exp, grp): """ Create a new 'run' in the database. This creates a new transaction in the database and creates a new run in this transaction. Afterwards we return both the transaction as well as the run itself. The user is responsible for committing it when the time ...

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def all_combinations_of_ensembl_genomes(args): """ Use all combinations of species and release versions specified by the commandline arguments to return a list of EnsemblRelease or Genome objects. The results will typically be of type EnsemblRelease unless the --custom-mirror argument was given. ...

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def setClockFormat(clockFormat, **kwargs): ''' Set the clock format, either 12h or 24h format. CLI Example: .. code-block:: bash salt '*' gnome.setClockFormat <12h|24h> user=<username> ''' if clockFormat != '12h' and clockFormat != '24h': return False _gsession = _GSettin...

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def linestring_node_to_line(node, with_depth=False): """ Returns an instance of a Linestring node to :class: openquake.hazardlib.geo.line.Line """ assert "LineString" in node.tag crds = [float(x) for x in node.nodes[0].text.split()] if with_depth: return Line([Point(crds[iloc], crds[...

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def get_window(self): """ Returns the object's parent window. Returns None if no window found. """ x = self while not x._parent == None and \ not isinstance(x._parent, Window): x = x._parent return x._parent

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def schemas(raw=False): """ Return the list of H₂O schemas. :param raw: if True, then the complete response to .../schemas is returned (including the metadata) """ json = _request_or_exit("/3/Metadata/schemas") if raw: return json assert "schemas" in json, "Unexpected result from /3/Metadat...

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def start_update(self, draw=None, queues=None): """ Conduct the formerly registered updates This method conducts the updates that have been registered via the :meth:`update` method. You can call this method if the :attr:`no_auto_update` attribute of this instance and the `auto_u...

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def _have(self, name=None): """Check if a configure flag is set. If called without argument, it returns all HAVE_* items. Example: {% if have('netinet/ip.h') %}...{% endif %} """ if name is None: return ( (k, v) for k, v in self.env.ite...

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28.733333

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def _parseSymbols(self, sections): """Sets a list of symbols in each DYNSYM and SYMTAB section""" for section in sections: strtab = sections[section.header.sh_link] if section.header.sh_type in (int(SHT.DYNSYM), int(SHT.SYMTAB)): section.symbols = self.__parseSymb...

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58.5

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def nodePop(ctxt): """Pops the top element node from the node stack """ if ctxt is None: ctxt__o = None else: ctxt__o = ctxt._o ret = libxml2mod.nodePop(ctxt__o) if ret is None:raise treeError('nodePop() failed') return xmlNode(_obj=ret)

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def get_qcontent(value): """qcontent = qtext / quoted-pair We allow anything except the DQUOTE character, but if we find any ASCII other than the RFC defined printable ASCII an NonPrintableDefect is added to the token's defects list. Any quoted pairs are converted to their unquoted values, so what...

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38.5

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def set_status(self, new_status): ''' Set the status of the report. :param new_status: the new status of the report (either PASSED, FAILED or ERROR) ''' if new_status not in Report.allowed_statuses: raise Exception('status must be one of: %s' % (', '.join(Report.allo...

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42.666667

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def addInstance(self, groundTruth, prediction, record = None, result = None): """Compute and store metric value""" self.value = self.avg(prediction)

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51.333333

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def current(sam=False): ''' Get the username that salt-minion is running under. If salt-minion is running as a service it should return the Local System account. If salt is running from a command prompt it should return the username that started the command prompt. .. versionadded:: 2015.5.6 ...

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30.230769

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def parse_yaml_linenumbers(data, filename): """Parses yaml as ansible.utils.parse_yaml but with linenumbers. The line numbers are stored in each node's LINE_NUMBER_KEY key. """ def compose_node(parent, index): # the line number where the previous token has ended (plus empty lines) line...

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38.475

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def StoreCSRFCookie(user, response): """Decorator for WSGI handler that inserts CSRF cookie into response.""" csrf_token = GenerateCSRFToken(user, None) response.set_cookie( "csrftoken", csrf_token, max_age=CSRF_TOKEN_DURATION.seconds)

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40.5

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def _run_node(self, node): ''' calc_dict._run_node(node) calculates the results of the given calculation node in the calc_dict's calculation plan and caches the results in the calc_dict. This should only be called by calc_dict itself internally. ''' #print IMap.indent, ('...

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44.913793

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def filter_greys_using_image(image, target): """Filter out any values in target not in image :param image: image containing values to appear in filtered image :param target: the image to filter :rtype: 2d :class:`numpy.ndarray` containing only value in image and with the same dimensions ...

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41.083333

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def _already_cutoff_filtered(in_file, filter_type): """Check if we have a pre-existing cutoff-based filter file from previous VQSR failure. """ filter_file = "%s-filter%s.vcf.gz" % (utils.splitext_plus(in_file)[0], filter_type) return utils.file_exists(filter_file)

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55.4

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def parity_plot(X, Y, model, devmodel, axes_labels=None): """ A standard method of creating parity plots between predicted and experimental values for trained models. Parameters ---------- X: array experimental input data Y: array experimental output data model: model ob...

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def apply(self, var, props, reverse=False): """ Apply the VPM to variable *var* and properties *props*. Args: var: a variable props: a dictionary mapping properties to values reverse: if `True`, apply the rules in reverse (e.g. from grammar-ex...

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41.170213

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def _chi2(self, theta, period, tmpid, return_gradient=False): """ Compute the chi2 for the given parameters, period, & template Optionally return the gradient for faster optimization """ template = self.templates[tmpid] phase = (self.t / period - theta[2]) % 1 mo...

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40.1

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def addUsersToRole(self, rolename, users): """ Assigns a role to multiple users """ params = { "f" : "json", "rolename" : rolename, "users" : users } rURL = self._url + "/roles/addUsersToRole" return self._post(url=rURL, param_dict=params, ...

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40.5

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def devices(self, **params): """ Method for `List Devices from an existing Distribution <https://m2x.att.com/developer/documentation/v2/distribution#List-Devices-from-an-existing-Distribution>`_ endpoint. :param params: Query parameters passed as keyword arguments. View M2X API Docs for listing of avai...

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65.272727

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def check_hints(self, ds): ''' Checks for potentially mislabeled metadata and makes suggestions for how to correct :param netCDF4.Dataset ds: An open netCDF dataset :rtype: list :return: List of results ''' ret_val = [] ret_val.extend(self._check_hint_bo...

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26.230769

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def cookie_decode(data, key): ''' Verify and decode an encoded string. Return an object or None''' if isinstance(data, unicode): data = data.encode('ascii') #2to3 hack if cookie_is_encoded(data): sig, msg = data.split(u'?'.encode('ascii'),1) #2to3 hack if sig[1:] == base64.b64encode(hmac.new...

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50.5

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def _CheckLine(self, line): """Passes the line through each rule until a match is made. Args: line: A string, the current input line. """ for rule in self._cur_state: matched = self._CheckRule(rule, line) if matched: for value in matched.groupdict(): self._AssignVar(...

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32.578947

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