partition stringclasses 3
values | func_name stringlengths 1 134 | docstring stringlengths 1 46.9k | path stringlengths 4 223 | original_string stringlengths 75 104k | code stringlengths 75 104k | docstring_tokens listlengths 1 1.97k | repo stringlengths 7 55 | language stringclasses 1
value | url stringlengths 87 315 | code_tokens listlengths 19 28.4k | sha stringlengths 40 40 |
|---|---|---|---|---|---|---|---|---|---|---|---|
train | load_ensembl_coverage | Load in Pageant CoverageDepth results with Ensembl loci.
coverage_path is a path to Pageant CoverageDepth output directory, with
one subdirectory per patient and a `cdf.csv` file inside each patient subdir.
If min_normal_depth is 0, calculate tumor coverage. Otherwise, calculate
join tumor/normal cove... | cohorts/variant_filters.py | def load_ensembl_coverage(cohort, coverage_path, min_tumor_depth, min_normal_depth=0,
pageant_dir_fn=None):
"""
Load in Pageant CoverageDepth results with Ensembl loci.
coverage_path is a path to Pageant CoverageDepth output directory, with
one subdirectory per patient and a `... | def load_ensembl_coverage(cohort, coverage_path, min_tumor_depth, min_normal_depth=0,
pageant_dir_fn=None):
"""
Load in Pageant CoverageDepth results with Ensembl loci.
coverage_path is a path to Pageant CoverageDepth output directory, with
one subdirectory per patient and a `... | [
"Load",
"in",
"Pageant",
"CoverageDepth",
"results",
"with",
"Ensembl",
"loci",
"."
] | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/variant_filters.py#L87-L160 | [
"def",
"load_ensembl_coverage",
"(",
"cohort",
",",
"coverage_path",
",",
"min_tumor_depth",
",",
"min_normal_depth",
"=",
"0",
",",
"pageant_dir_fn",
"=",
"None",
")",
":",
"# Function to grab the pageant file name using the Patient",
"if",
"pageant_dir_fn",
"is",
"None"... | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | vertical_percent | Using the size of the y axis, return a fraction of that size. | cohorts/plot.py | def vertical_percent(plot, percent=0.1):
"""
Using the size of the y axis, return a fraction of that size.
"""
plot_bottom, plot_top = plot.get_ylim()
return percent * (plot_top - plot_bottom) | def vertical_percent(plot, percent=0.1):
"""
Using the size of the y axis, return a fraction of that size.
"""
plot_bottom, plot_top = plot.get_ylim()
return percent * (plot_top - plot_bottom) | [
"Using",
"the",
"size",
"of",
"the",
"y",
"axis",
"return",
"a",
"fraction",
"of",
"that",
"size",
"."
] | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/plot.py#L24-L29 | [
"def",
"vertical_percent",
"(",
"plot",
",",
"percent",
"=",
"0.1",
")",
":",
"plot_bottom",
",",
"plot_top",
"=",
"plot",
".",
"get_ylim",
"(",
")",
"return",
"percent",
"*",
"(",
"plot_top",
"-",
"plot_bottom",
")"
] | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | hide_ticks | Hide tick values that are outside of [min_tick_value, max_tick_value] | cohorts/plot.py | def hide_ticks(plot, min_tick_value=None, max_tick_value=None):
"""Hide tick values that are outside of [min_tick_value, max_tick_value]"""
for tick, tick_value in zip(plot.get_yticklabels(), plot.get_yticks()):
tick_label = as_numeric(tick_value)
if tick_label:
if (min_tick_value is... | def hide_ticks(plot, min_tick_value=None, max_tick_value=None):
"""Hide tick values that are outside of [min_tick_value, max_tick_value]"""
for tick, tick_value in zip(plot.get_yticklabels(), plot.get_yticks()):
tick_label = as_numeric(tick_value)
if tick_label:
if (min_tick_value is... | [
"Hide",
"tick",
"values",
"that",
"are",
"outside",
"of",
"[",
"min_tick_value",
"max_tick_value",
"]"
] | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/plot.py#L37-L44 | [
"def",
"hide_ticks",
"(",
"plot",
",",
"min_tick_value",
"=",
"None",
",",
"max_tick_value",
"=",
"None",
")",
":",
"for",
"tick",
",",
"tick_value",
"in",
"zip",
"(",
"plot",
".",
"get_yticklabels",
"(",
")",
",",
"plot",
".",
"get_yticks",
"(",
")",
... | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | add_significance_indicator | Add a p-value significance indicator. | cohorts/plot.py | def add_significance_indicator(plot, col_a=0, col_b=1, significant=False):
"""
Add a p-value significance indicator.
"""
plot_bottom, plot_top = plot.get_ylim()
# Give the plot a little room for the significance indicator
line_height = vertical_percent(plot, 0.1)
# Add some extra spacing bel... | def add_significance_indicator(plot, col_a=0, col_b=1, significant=False):
"""
Add a p-value significance indicator.
"""
plot_bottom, plot_top = plot.get_ylim()
# Give the plot a little room for the significance indicator
line_height = vertical_percent(plot, 0.1)
# Add some extra spacing bel... | [
"Add",
"a",
"p",
"-",
"value",
"significance",
"indicator",
"."
] | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/plot.py#L55-L70 | [
"def",
"add_significance_indicator",
"(",
"plot",
",",
"col_a",
"=",
"0",
",",
"col_b",
"=",
"1",
",",
"significant",
"=",
"False",
")",
":",
"plot_bottom",
",",
"plot_top",
"=",
"plot",
".",
"get_ylim",
"(",
")",
"# Give the plot a little room for the significa... | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | stripboxplot | Overlay a stripplot on top of a boxplot. | cohorts/plot.py | def stripboxplot(x, y, data, ax=None, significant=None, **kwargs):
"""
Overlay a stripplot on top of a boxplot.
"""
ax = sb.boxplot(
x=x,
y=y,
data=data,
ax=ax,
fliersize=0,
**kwargs
)
plot = sb.stripplot(
x=x,
y=y,
data=da... | def stripboxplot(x, y, data, ax=None, significant=None, **kwargs):
"""
Overlay a stripplot on top of a boxplot.
"""
ax = sb.boxplot(
x=x,
y=y,
data=data,
ax=ax,
fliersize=0,
**kwargs
)
plot = sb.stripplot(
x=x,
y=y,
data=da... | [
"Overlay",
"a",
"stripplot",
"on",
"top",
"of",
"a",
"boxplot",
"."
] | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/plot.py#L72-L100 | [
"def",
"stripboxplot",
"(",
"x",
",",
"y",
",",
"data",
",",
"ax",
"=",
"None",
",",
"significant",
"=",
"None",
",",
"*",
"*",
"kwargs",
")",
":",
"ax",
"=",
"sb",
".",
"boxplot",
"(",
"x",
"=",
"x",
",",
"y",
"=",
"y",
",",
"data",
"=",
"... | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | fishers_exact_plot | Perform a Fisher's exact test to compare to binary columns
Parameters
----------
data: Pandas dataframe
Dataframe to retrieve information from
condition1: str
First binary column to compare (and used for test sidedness)
condition2: str
Second binary column to compare
... | cohorts/plot.py | def fishers_exact_plot(data, condition1, condition2, ax=None,
condition1_value=None,
alternative="two-sided", **kwargs):
"""
Perform a Fisher's exact test to compare to binary columns
Parameters
----------
data: Pandas dataframe
Dataframe to ret... | def fishers_exact_plot(data, condition1, condition2, ax=None,
condition1_value=None,
alternative="two-sided", **kwargs):
"""
Perform a Fisher's exact test to compare to binary columns
Parameters
----------
data: Pandas dataframe
Dataframe to ret... | [
"Perform",
"a",
"Fisher",
"s",
"exact",
"test",
"to",
"compare",
"to",
"binary",
"columns"
] | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/plot.py#L130-L182 | [
"def",
"fishers_exact_plot",
"(",
"data",
",",
"condition1",
",",
"condition2",
",",
"ax",
"=",
"None",
",",
"condition1_value",
"=",
"None",
",",
"alternative",
"=",
"\"two-sided\"",
",",
"*",
"*",
"kwargs",
")",
":",
"plot",
"=",
"sb",
".",
"barplot",
... | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | mann_whitney_plot | Create a box plot comparing a condition and perform a
Mann Whitney test to compare the distribution in condition A v B
Parameters
----------
data: Pandas dataframe
Dataframe to retrieve information from
condition: str
Column to use as the splitting criteria
distribution: str
... | cohorts/plot.py | def mann_whitney_plot(data,
condition,
distribution,
ax=None,
condition_value=None,
alternative="two-sided",
skip_plot=False,
**kwargs):
"""
Create a box plot... | def mann_whitney_plot(data,
condition,
distribution,
ax=None,
condition_value=None,
alternative="two-sided",
skip_plot=False,
**kwargs):
"""
Create a box plot... | [
"Create",
"a",
"box",
"plot",
"comparing",
"a",
"condition",
"and",
"perform",
"a",
"Mann",
"Whitney",
"test",
"to",
"compare",
"the",
"distribution",
"in",
"condition",
"A",
"v",
"B"
] | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/plot.py#L192-L253 | [
"def",
"mann_whitney_plot",
"(",
"data",
",",
"condition",
",",
"distribution",
",",
"ax",
"=",
"None",
",",
"condition_value",
"=",
"None",
",",
"alternative",
"=",
"\"two-sided\"",
",",
"skip_plot",
"=",
"False",
",",
"*",
"*",
"kwargs",
")",
":",
"condi... | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | roc_curve_plot | Create a ROC curve and compute the bootstrap AUC for the given variable and outcome
Parameters
----------
data : Pandas dataframe
Dataframe to retrieve information from
value_column : str
Column to retrieve the values from
outcome_column : str
Column to use as the outcome va... | cohorts/plot.py | def roc_curve_plot(data, value_column, outcome_column, bootstrap_samples=100, ax=None):
"""Create a ROC curve and compute the bootstrap AUC for the given variable and outcome
Parameters
----------
data : Pandas dataframe
Dataframe to retrieve information from
value_column : str
Colu... | def roc_curve_plot(data, value_column, outcome_column, bootstrap_samples=100, ax=None):
"""Create a ROC curve and compute the bootstrap AUC for the given variable and outcome
Parameters
----------
data : Pandas dataframe
Dataframe to retrieve information from
value_column : str
Colu... | [
"Create",
"a",
"ROC",
"curve",
"and",
"compute",
"the",
"bootstrap",
"AUC",
"for",
"the",
"given",
"variable",
"and",
"outcome"
] | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/plot.py#L263-L308 | [
"def",
"roc_curve_plot",
"(",
"data",
",",
"value_column",
",",
"outcome_column",
",",
"bootstrap_samples",
"=",
"100",
",",
"ax",
"=",
"None",
")",
":",
"scores",
"=",
"bootstrap_auc",
"(",
"df",
"=",
"data",
",",
"col",
"=",
"value_column",
",",
"pred_co... | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | get_cache_dir | Return full cache_dir, according to following logic:
- if cache_dir is a full path (per path.isabs), return that value
- if not and if cache_root_dir is not None, join two paths
- otherwise, log warnings and return None
Separately, if args or kwargs are given, format cache_dir using kwargs | cohorts/utils.py | def get_cache_dir(cache_dir, cache_root_dir=None, *args, **kwargs):
"""
Return full cache_dir, according to following logic:
- if cache_dir is a full path (per path.isabs), return that value
- if not and if cache_root_dir is not None, join two paths
- otherwise, log warnings and return N... | def get_cache_dir(cache_dir, cache_root_dir=None, *args, **kwargs):
"""
Return full cache_dir, according to following logic:
- if cache_dir is a full path (per path.isabs), return that value
- if not and if cache_root_dir is not None, join two paths
- otherwise, log warnings and return N... | [
"Return",
"full",
"cache_dir",
"according",
"to",
"following",
"logic",
":",
"-",
"if",
"cache_dir",
"is",
"a",
"full",
"path",
"(",
"per",
"path",
".",
"isabs",
")",
"return",
"that",
"value",
"-",
"if",
"not",
"and",
"if",
"cache_root_dir",
"is",
"not"... | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/utils.py#L24-L41 | [
"def",
"get_cache_dir",
"(",
"cache_dir",
",",
"cache_root_dir",
"=",
"None",
",",
"*",
"args",
",",
"*",
"*",
"kwargs",
")",
":",
"cache_dir",
"=",
"cache_dir",
".",
"format",
"(",
"*",
"args",
",",
"*",
"*",
"kwargs",
")",
"if",
"path",
".",
"isabs... | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | _strip_column_name | Utility script applying several regexs to a string.
Intended to be used by `strip_column_names`.
This function will:
1. replace informative punctuation components with text
2. (optionally) remove text within parentheses
3. replace remaining punctuation/whitespace with _
4. strip... | cohorts/utils.py | def _strip_column_name(col_name, keep_paren_contents=True):
"""
Utility script applying several regexs to a string.
Intended to be used by `strip_column_names`.
This function will:
1. replace informative punctuation components with text
2. (optionally) remove text within parentheses
... | def _strip_column_name(col_name, keep_paren_contents=True):
"""
Utility script applying several regexs to a string.
Intended to be used by `strip_column_names`.
This function will:
1. replace informative punctuation components with text
2. (optionally) remove text within parentheses
... | [
"Utility",
"script",
"applying",
"several",
"regexs",
"to",
"a",
"string",
".",
"Intended",
"to",
"be",
"used",
"by",
"strip_column_names",
"."
] | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/utils.py#L84-L142 | [
"def",
"_strip_column_name",
"(",
"col_name",
",",
"keep_paren_contents",
"=",
"True",
")",
":",
"# start with input",
"new_col_name",
"=",
"col_name",
"# replace meaningful punctuation with text equivalents",
"# surround each with whitespace to enforce consistent use of _",
"punctua... | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | strip_column_names | Utility script for renaming pandas columns to patsy-friendly names.
Revised names have been:
- stripped of all punctuation and whitespace (converted to text or `_`)
- converted to lower case
Takes a list of column names, returns a dict mapping
names to revised names.
If there are any ... | cohorts/utils.py | def strip_column_names(cols, keep_paren_contents=True):
"""
Utility script for renaming pandas columns to patsy-friendly names.
Revised names have been:
- stripped of all punctuation and whitespace (converted to text or `_`)
- converted to lower case
Takes a list of column names, retur... | def strip_column_names(cols, keep_paren_contents=True):
"""
Utility script for renaming pandas columns to patsy-friendly names.
Revised names have been:
- stripped of all punctuation and whitespace (converted to text or `_`)
- converted to lower case
Takes a list of column names, retur... | [
"Utility",
"script",
"for",
"renaming",
"pandas",
"columns",
"to",
"patsy",
"-",
"friendly",
"names",
"."
] | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/utils.py#L144-L201 | [
"def",
"strip_column_names",
"(",
"cols",
",",
"keep_paren_contents",
"=",
"True",
")",
":",
"# strip/replace punctuation",
"new_cols",
"=",
"[",
"_strip_column_name",
"(",
"col",
",",
"keep_paren_contents",
"=",
"keep_paren_contents",
")",
"for",
"col",
"in",
"cols... | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | set_attributes | Given an object and a dictionary, give the object new attributes from that dictionary.
Uses _strip_column_name to git rid of whitespace/uppercase/special characters. | cohorts/utils.py | def set_attributes(obj, additional_data):
"""
Given an object and a dictionary, give the object new attributes from that dictionary.
Uses _strip_column_name to git rid of whitespace/uppercase/special characters.
"""
for key, value in additional_data.items():
if hasattr(obj, key):
... | def set_attributes(obj, additional_data):
"""
Given an object and a dictionary, give the object new attributes from that dictionary.
Uses _strip_column_name to git rid of whitespace/uppercase/special characters.
"""
for key, value in additional_data.items():
if hasattr(obj, key):
... | [
"Given",
"an",
"object",
"and",
"a",
"dictionary",
"give",
"the",
"object",
"new",
"attributes",
"from",
"that",
"dictionary",
"."
] | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/utils.py#L210-L219 | [
"def",
"set_attributes",
"(",
"obj",
",",
"additional_data",
")",
":",
"for",
"key",
",",
"value",
"in",
"additional_data",
".",
"items",
"(",
")",
":",
"if",
"hasattr",
"(",
"obj",
",",
"key",
")",
":",
"raise",
"ValueError",
"(",
"\"Key %s in additional_... | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | DataFrameHolder.return_obj | Construct a DataFrameHolder and then return either that or the DataFrame. | cohorts/utils.py | def return_obj(cols, df, return_cols=False):
"""Construct a DataFrameHolder and then return either that or the DataFrame."""
df_holder = DataFrameHolder(cols=cols, df=df)
return df_holder.return_self(return_cols=return_cols) | def return_obj(cols, df, return_cols=False):
"""Construct a DataFrameHolder and then return either that or the DataFrame."""
df_holder = DataFrameHolder(cols=cols, df=df)
return df_holder.return_self(return_cols=return_cols) | [
"Construct",
"a",
"DataFrameHolder",
"and",
"then",
"return",
"either",
"that",
"or",
"the",
"DataFrame",
"."
] | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/utils.py#L54-L57 | [
"def",
"return_obj",
"(",
"cols",
",",
"df",
",",
"return_cols",
"=",
"False",
")",
":",
"df_holder",
"=",
"DataFrameHolder",
"(",
"cols",
"=",
"cols",
",",
"df",
"=",
"df",
")",
"return",
"df_holder",
".",
"return_self",
"(",
"return_cols",
"=",
"return... | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | compare_provenance | Utility function to compare two abritrary provenance dicts
returns number of discrepancies.
Parameters
----------
this_provenance: provenance dict (to be compared to "other_provenance")
other_provenance: comparison provenance dict
(optional)
left_outer_diff: description/prefix used when pr... | cohorts/provenance.py | def compare_provenance(
this_provenance, other_provenance,
left_outer_diff = "In current but not comparison",
right_outer_diff = "In comparison but not current"):
"""Utility function to compare two abritrary provenance dicts
returns number of discrepancies.
Parameters
----------... | def compare_provenance(
this_provenance, other_provenance,
left_outer_diff = "In current but not comparison",
right_outer_diff = "In comparison but not current"):
"""Utility function to compare two abritrary provenance dicts
returns number of discrepancies.
Parameters
----------... | [
"Utility",
"function",
"to",
"compare",
"two",
"abritrary",
"provenance",
"dicts",
"returns",
"number",
"of",
"discrepancies",
"."
] | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/provenance.py#L22-L65 | [
"def",
"compare_provenance",
"(",
"this_provenance",
",",
"other_provenance",
",",
"left_outer_diff",
"=",
"\"In current but not comparison\"",
",",
"right_outer_diff",
"=",
"\"In comparison but not current\"",
")",
":",
"## if either this or other items is null, return 0",
"if",
... | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | _plot_kmf_single | Helper function to produce a single KM survival plot, among observations in df by groups defined by condition_col.
All inputs are required - this function is intended to be called by `plot_kmf`. | cohorts/survival.py | def _plot_kmf_single(df,
condition_col,
survival_col,
censor_col,
threshold,
title,
xlabel,
ylabel,
ax,
with_condition_color,
... | def _plot_kmf_single(df,
condition_col,
survival_col,
censor_col,
threshold,
title,
xlabel,
ylabel,
ax,
with_condition_color,
... | [
"Helper",
"function",
"to",
"produce",
"a",
"single",
"KM",
"survival",
"plot",
"among",
"observations",
"in",
"df",
"by",
"groups",
"defined",
"by",
"condition_col",
"."
] | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/survival.py#L31-L171 | [
"def",
"_plot_kmf_single",
"(",
"df",
",",
"condition_col",
",",
"survival_col",
",",
"censor_col",
",",
"threshold",
",",
"title",
",",
"xlabel",
",",
"ylabel",
",",
"ax",
",",
"with_condition_color",
",",
"no_condition_color",
",",
"with_condition_label",
",",
... | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | plot_kmf | Plot survival curves by splitting the dataset into two groups based on
condition_col. Report results for a log-rank test (if two groups are plotted)
or CoxPH survival analysis (if >2 groups) for association with survival.
Regarding definition of groups:
If condition_col is numeric, values are split... | cohorts/survival.py | def plot_kmf(df,
condition_col,
censor_col,
survival_col,
strata_col=None,
threshold=None,
title=None,
xlabel=None,
ylabel=None,
ax=None,
with_condition_color="#B38600",
no_cond... | def plot_kmf(df,
condition_col,
censor_col,
survival_col,
strata_col=None,
threshold=None,
title=None,
xlabel=None,
ylabel=None,
ax=None,
with_condition_color="#B38600",
no_cond... | [
"Plot",
"survival",
"curves",
"by",
"splitting",
"the",
"dataset",
"into",
"two",
"groups",
"based",
"on",
"condition_col",
".",
"Report",
"results",
"for",
"a",
"log",
"-",
"rank",
"test",
"(",
"if",
"two",
"groups",
"are",
"plotted",
")",
"or",
"CoxPH",
... | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/survival.py#L174-L307 | [
"def",
"plot_kmf",
"(",
"df",
",",
"condition_col",
",",
"censor_col",
",",
"survival_col",
",",
"strata_col",
"=",
"None",
",",
"threshold",
"=",
"None",
",",
"title",
"=",
"None",
",",
"xlabel",
"=",
"None",
",",
"ylabel",
"=",
"None",
",",
"ax",
"="... | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | FormattedText.concat | :type formatted_text: FormattedText | bot/action/util/textformat.py | def concat(self, formatted_text):
""":type formatted_text: FormattedText"""
assert self._is_compatible(formatted_text), "Cannot concat text with different modes"
self.text += formatted_text.text
return self | def concat(self, formatted_text):
""":type formatted_text: FormattedText"""
assert self._is_compatible(formatted_text), "Cannot concat text with different modes"
self.text += formatted_text.text
return self | [
":",
"type",
"formatted_text",
":",
"FormattedText"
] | alvarogzp/telegram-bot-framework | python | https://github.com/alvarogzp/telegram-bot-framework/blob/7b597a415c1901901c677976cb13100fc3083107/bot/action/util/textformat.py#L42-L46 | [
"def",
"concat",
"(",
"self",
",",
"formatted_text",
")",
":",
"assert",
"self",
".",
"_is_compatible",
"(",
"formatted_text",
")",
",",
"\"Cannot concat text with different modes\"",
"self",
".",
"text",
"+=",
"formatted_text",
".",
"text",
"return",
"self"
] | 7b597a415c1901901c677976cb13100fc3083107 |
train | FormattedText.join | :type formatted_texts: list[FormattedText] | bot/action/util/textformat.py | def join(self, formatted_texts):
""":type formatted_texts: list[FormattedText]"""
formatted_texts = list(formatted_texts) # so that after the first iteration elements are not lost if generator
for formatted_text in formatted_texts:
assert self._is_compatible(formatted_text), "Cannot... | def join(self, formatted_texts):
""":type formatted_texts: list[FormattedText]"""
formatted_texts = list(formatted_texts) # so that after the first iteration elements are not lost if generator
for formatted_text in formatted_texts:
assert self._is_compatible(formatted_text), "Cannot... | [
":",
"type",
"formatted_texts",
":",
"list",
"[",
"FormattedText",
"]"
] | alvarogzp/telegram-bot-framework | python | https://github.com/alvarogzp/telegram-bot-framework/blob/7b597a415c1901901c677976cb13100fc3083107/bot/action/util/textformat.py#L48-L54 | [
"def",
"join",
"(",
"self",
",",
"formatted_texts",
")",
":",
"formatted_texts",
"=",
"list",
"(",
"formatted_texts",
")",
"# so that after the first iteration elements are not lost if generator",
"for",
"formatted_text",
"in",
"formatted_texts",
":",
"assert",
"self",
".... | 7b597a415c1901901c677976cb13100fc3083107 |
train | FormattedTextStringFormat.concat | :type args: FormattedText
:type kwargs: FormattedText | bot/action/util/textformat.py | def concat(self, *args, **kwargs):
"""
:type args: FormattedText
:type kwargs: FormattedText
"""
for arg in args:
assert self.formatted_text._is_compatible(arg), "Cannot concat text with different modes"
self.format_args.append(arg.text)
for kwarg ... | def concat(self, *args, **kwargs):
"""
:type args: FormattedText
:type kwargs: FormattedText
"""
for arg in args:
assert self.formatted_text._is_compatible(arg), "Cannot concat text with different modes"
self.format_args.append(arg.text)
for kwarg ... | [
":",
"type",
"args",
":",
"FormattedText",
":",
"type",
"kwargs",
":",
"FormattedText"
] | alvarogzp/telegram-bot-framework | python | https://github.com/alvarogzp/telegram-bot-framework/blob/7b597a415c1901901c677976cb13100fc3083107/bot/action/util/textformat.py#L251-L263 | [
"def",
"concat",
"(",
"self",
",",
"*",
"args",
",",
"*",
"*",
"kwargs",
")",
":",
"for",
"arg",
"in",
"args",
":",
"assert",
"self",
".",
"formatted_text",
".",
"_is_compatible",
"(",
"arg",
")",
",",
"\"Cannot concat text with different modes\"",
"self",
... | 7b597a415c1901901c677976cb13100fc3083107 |
train | random_cohort | Parameters
----------
min_random_variants: optional, int
Minimum number of random variants to be generated per patient.
max_random_variants: optional, int
Maximum number of random variants to be generated per patient. | cohorts/random.py | def random_cohort(size, cache_dir, data_dir=None,
min_random_variants=None,
max_random_variants=None,
seed_val=1234):
"""
Parameters
----------
min_random_variants: optional, int
Minimum number of random variants to be generated per patient.
... | def random_cohort(size, cache_dir, data_dir=None,
min_random_variants=None,
max_random_variants=None,
seed_val=1234):
"""
Parameters
----------
min_random_variants: optional, int
Minimum number of random variants to be generated per patient.
... | [
"Parameters",
"----------",
"min_random_variants",
":",
"optional",
"int",
"Minimum",
"number",
"of",
"random",
"variants",
"to",
"be",
"generated",
"per",
"patient",
".",
"max_random_variants",
":",
"optional",
"int",
"Maximum",
"number",
"of",
"random",
"variants"... | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/random.py#L24-L75 | [
"def",
"random_cohort",
"(",
"size",
",",
"cache_dir",
",",
"data_dir",
"=",
"None",
",",
"min_random_variants",
"=",
"None",
",",
"max_random_variants",
"=",
"None",
",",
"seed_val",
"=",
"1234",
")",
":",
"seed",
"(",
"seed_val",
")",
"d",
"=",
"{",
"}... | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | generate_random_missense_variants | Generate a random collection of missense variants by trying random variants repeatedly. | cohorts/random.py | def generate_random_missense_variants(num_variants=10, max_search=100000, reference="GRCh37"):
"""
Generate a random collection of missense variants by trying random variants repeatedly.
"""
variants = []
for i in range(max_search):
bases = ["A", "C", "T", "G"]
random_ref = choice(ba... | def generate_random_missense_variants(num_variants=10, max_search=100000, reference="GRCh37"):
"""
Generate a random collection of missense variants by trying random variants repeatedly.
"""
variants = []
for i in range(max_search):
bases = ["A", "C", "T", "G"]
random_ref = choice(ba... | [
"Generate",
"a",
"random",
"collection",
"of",
"missense",
"variants",
"by",
"trying",
"random",
"variants",
"repeatedly",
"."
] | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/random.py#L77-L100 | [
"def",
"generate_random_missense_variants",
"(",
"num_variants",
"=",
"10",
",",
"max_search",
"=",
"100000",
",",
"reference",
"=",
"\"GRCh37\"",
")",
":",
"variants",
"=",
"[",
"]",
"for",
"i",
"in",
"range",
"(",
"max_search",
")",
":",
"bases",
"=",
"[... | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | generate_simple_vcf | Output a very simple metadata-free VCF for each variant in a variant_collection. | cohorts/random.py | def generate_simple_vcf(filename, variant_collection):
"""
Output a very simple metadata-free VCF for each variant in a variant_collection.
"""
contigs = []
positions = []
refs = []
alts = []
for variant in variant_collection:
contigs.append("chr" + variant.contig)
positi... | def generate_simple_vcf(filename, variant_collection):
"""
Output a very simple metadata-free VCF for each variant in a variant_collection.
"""
contigs = []
positions = []
refs = []
alts = []
for variant in variant_collection:
contigs.append("chr" + variant.contig)
positi... | [
"Output",
"a",
"very",
"simple",
"metadata",
"-",
"free",
"VCF",
"for",
"each",
"variant",
"in",
"a",
"variant_collection",
"."
] | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/random.py#L102-L140 | [
"def",
"generate_simple_vcf",
"(",
"filename",
",",
"variant_collection",
")",
":",
"contigs",
"=",
"[",
"]",
"positions",
"=",
"[",
"]",
"refs",
"=",
"[",
"]",
"alts",
"=",
"[",
"]",
"for",
"variant",
"in",
"variant_collection",
":",
"contigs",
".",
"ap... | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | SFTPServerInterface.list_folder | Looks up folder contents of `path.` | mockssh/sftp.py | def list_folder(self, path):
"""Looks up folder contents of `path.`"""
# Inspired by https://github.com/rspivak/sftpserver/blob/0.3/src/sftpserver/stub_sftp.py#L70
try:
folder_contents = []
for f in os.listdir(path):
attr = paramiko.SFTPAttributes.from_sta... | def list_folder(self, path):
"""Looks up folder contents of `path.`"""
# Inspired by https://github.com/rspivak/sftpserver/blob/0.3/src/sftpserver/stub_sftp.py#L70
try:
folder_contents = []
for f in os.listdir(path):
attr = paramiko.SFTPAttributes.from_sta... | [
"Looks",
"up",
"folder",
"contents",
"of",
"path",
"."
] | carletes/mock-ssh-server | python | https://github.com/carletes/mock-ssh-server/blob/0d724ad4a43bafcb6a4bbe28b52383528f3460cc/mockssh/sftp.py#L142-L153 | [
"def",
"list_folder",
"(",
"self",
",",
"path",
")",
":",
"# Inspired by https://github.com/rspivak/sftpserver/blob/0.3/src/sftpserver/stub_sftp.py#L70",
"try",
":",
"folder_contents",
"=",
"[",
"]",
"for",
"f",
"in",
"os",
".",
"listdir",
"(",
"path",
")",
":",
"at... | 0d724ad4a43bafcb6a4bbe28b52383528f3460cc |
train | filter_variants | Filter variants from the Variant Collection
Parameters
----------
variant_collection : varcode.VariantCollection
patient : cohorts.Patient
filter_fn: function
Takes a FilterableVariant and returns a boolean. Only variants returning True are preserved.
Returns
-------
varcode.Va... | cohorts/varcode_utils.py | def filter_variants(variant_collection, patient, filter_fn, **kwargs):
"""Filter variants from the Variant Collection
Parameters
----------
variant_collection : varcode.VariantCollection
patient : cohorts.Patient
filter_fn: function
Takes a FilterableVariant and returns a boolean. Only ... | def filter_variants(variant_collection, patient, filter_fn, **kwargs):
"""Filter variants from the Variant Collection
Parameters
----------
variant_collection : varcode.VariantCollection
patient : cohorts.Patient
filter_fn: function
Takes a FilterableVariant and returns a boolean. Only ... | [
"Filter",
"variants",
"from",
"the",
"Variant",
"Collection"
] | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/varcode_utils.py#L79-L105 | [
"def",
"filter_variants",
"(",
"variant_collection",
",",
"patient",
",",
"filter_fn",
",",
"*",
"*",
"kwargs",
")",
":",
"if",
"filter_fn",
":",
"return",
"variant_collection",
".",
"clone_with_new_elements",
"(",
"[",
"variant",
"for",
"variant",
"in",
"varian... | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | filter_effects | Filter variants from the Effect Collection
Parameters
----------
effect_collection : varcode.EffectCollection
variant_collection : varcode.VariantCollection
patient : cohorts.Patient
filter_fn : function
Takes a FilterableEffect and returns a boolean. Only effects returning True are pre... | cohorts/varcode_utils.py | def filter_effects(effect_collection, variant_collection, patient, filter_fn, all_effects, **kwargs):
"""Filter variants from the Effect Collection
Parameters
----------
effect_collection : varcode.EffectCollection
variant_collection : varcode.VariantCollection
patient : cohorts.Patient
fil... | def filter_effects(effect_collection, variant_collection, patient, filter_fn, all_effects, **kwargs):
"""Filter variants from the Effect Collection
Parameters
----------
effect_collection : varcode.EffectCollection
variant_collection : varcode.VariantCollection
patient : cohorts.Patient
fil... | [
"Filter",
"variants",
"from",
"the",
"Effect",
"Collection"
] | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/varcode_utils.py#L107-L157 | [
"def",
"filter_effects",
"(",
"effect_collection",
",",
"variant_collection",
",",
"patient",
",",
"filter_fn",
",",
"all_effects",
",",
"*",
"*",
"kwargs",
")",
":",
"def",
"top_priority_maybe",
"(",
"effect_collection",
")",
":",
"\"\"\"\n Always (unless all_... | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | count_lines_in | Count lines in a file | src/timelog/lib.py | def count_lines_in(filename):
"Count lines in a file"
f = open(filename)
lines = 0
buf_size = 1024 * 1024
read_f = f.read # loop optimization
buf = read_f(buf_size)
while buf:
lines += buf.count('\n')
buf = read_f(buf_size)
return lines | def count_lines_in(filename):
"Count lines in a file"
f = open(filename)
lines = 0
buf_size = 1024 * 1024
read_f = f.read # loop optimization
buf = read_f(buf_size)
while buf:
lines += buf.count('\n')
buf = read_f(buf_size)
return lines | [
"Count",
"lines",
"in",
"a",
"file"
] | garethr/django-timelog | python | https://github.com/garethr/django-timelog/blob/84c7015248a82faccb9d3fe4e6014645cc9ec103/src/timelog/lib.py#L16-L28 | [
"def",
"count_lines_in",
"(",
"filename",
")",
":",
"f",
"=",
"open",
"(",
"filename",
")",
"lines",
"=",
"0",
"buf_size",
"=",
"1024",
"*",
"1024",
"read_f",
"=",
"f",
".",
"read",
"# loop optimization",
"buf",
"=",
"read_f",
"(",
"buf_size",
")",
"wh... | 84c7015248a82faccb9d3fe4e6014645cc9ec103 |
train | view_name_from | Resolve a path to the full python module name of the related view function | src/timelog/lib.py | def view_name_from(path):
"Resolve a path to the full python module name of the related view function"
try:
return CACHED_VIEWS[path]
except KeyError:
view = resolve(path)
module = path
name = ''
if hasattr(view.func, '__module__'):
module = resol... | def view_name_from(path):
"Resolve a path to the full python module name of the related view function"
try:
return CACHED_VIEWS[path]
except KeyError:
view = resolve(path)
module = path
name = ''
if hasattr(view.func, '__module__'):
module = resol... | [
"Resolve",
"a",
"path",
"to",
"the",
"full",
"python",
"module",
"name",
"of",
"the",
"related",
"view",
"function"
] | garethr/django-timelog | python | https://github.com/garethr/django-timelog/blob/84c7015248a82faccb9d3fe4e6014645cc9ec103/src/timelog/lib.py#L30-L46 | [
"def",
"view_name_from",
"(",
"path",
")",
":",
"try",
":",
"return",
"CACHED_VIEWS",
"[",
"path",
"]",
"except",
"KeyError",
":",
"view",
"=",
"resolve",
"(",
"path",
")",
"module",
"=",
"path",
"name",
"=",
"''",
"if",
"hasattr",
"(",
"view",
".",
... | 84c7015248a82faccb9d3fe4e6014645cc9ec103 |
train | generate_table_from | Output a nicely formatted ascii table | src/timelog/lib.py | def generate_table_from(data):
"Output a nicely formatted ascii table"
table = Texttable(max_width=120)
table.add_row(["view", "method", "status", "count", "minimum", "maximum", "mean", "stdev", "queries", "querytime"])
table.set_cols_align(["l", "l", "l", "r", "r", "r", "r", "r", "r", "r"])
for i... | def generate_table_from(data):
"Output a nicely formatted ascii table"
table = Texttable(max_width=120)
table.add_row(["view", "method", "status", "count", "minimum", "maximum", "mean", "stdev", "queries", "querytime"])
table.set_cols_align(["l", "l", "l", "r", "r", "r", "r", "r", "r", "r"])
for i... | [
"Output",
"a",
"nicely",
"formatted",
"ascii",
"table"
] | garethr/django-timelog | python | https://github.com/garethr/django-timelog/blob/84c7015248a82faccb9d3fe4e6014645cc9ec103/src/timelog/lib.py#L48-L70 | [
"def",
"generate_table_from",
"(",
"data",
")",
":",
"table",
"=",
"Texttable",
"(",
"max_width",
"=",
"120",
")",
"table",
".",
"add_row",
"(",
"[",
"\"view\"",
",",
"\"method\"",
",",
"\"status\"",
",",
"\"count\"",
",",
"\"minimum\"",
",",
"\"maximum\"",
... | 84c7015248a82faccb9d3fe4e6014645cc9ec103 |
train | analyze_log_file | Given a log file and regex group and extract the performance data | src/timelog/lib.py | def analyze_log_file(logfile, pattern, reverse_paths=True, progress=True):
"Given a log file and regex group and extract the performance data"
if progress:
lines = count_lines_in(logfile)
pbar = ProgressBar(widgets=[Percentage(), Bar()], maxval=lines+1).start()
counter = 0
data ... | def analyze_log_file(logfile, pattern, reverse_paths=True, progress=True):
"Given a log file and regex group and extract the performance data"
if progress:
lines = count_lines_in(logfile)
pbar = ProgressBar(widgets=[Percentage(), Bar()], maxval=lines+1).start()
counter = 0
data ... | [
"Given",
"a",
"log",
"file",
"and",
"regex",
"group",
"and",
"extract",
"the",
"performance",
"data"
] | garethr/django-timelog | python | https://github.com/garethr/django-timelog/blob/84c7015248a82faccb9d3fe4e6014645cc9ec103/src/timelog/lib.py#L72-L132 | [
"def",
"analyze_log_file",
"(",
"logfile",
",",
"pattern",
",",
"reverse_paths",
"=",
"True",
",",
"progress",
"=",
"True",
")",
":",
"if",
"progress",
":",
"lines",
"=",
"count_lines_in",
"(",
"logfile",
")",
"pbar",
"=",
"ProgressBar",
"(",
"widgets",
"=... | 84c7015248a82faccb9d3fe4e6014645cc9ec103 |
train | Collection.to_string | Create a string representation of this collection, showing up to
`limit` items. | cohorts/collection.py | def to_string(self, limit=None):
"""
Create a string representation of this collection, showing up to
`limit` items.
"""
header = self.short_string()
if len(self) == 0:
return header
contents = ""
element_lines = [
" -- %s" % (elem... | def to_string(self, limit=None):
"""
Create a string representation of this collection, showing up to
`limit` items.
"""
header = self.short_string()
if len(self) == 0:
return header
contents = ""
element_lines = [
" -- %s" % (elem... | [
"Create",
"a",
"string",
"representation",
"of",
"this",
"collection",
"showing",
"up",
"to",
"limit",
"items",
"."
] | hammerlab/cohorts | python | https://github.com/hammerlab/cohorts/blob/278b05e609e6c4d4a77c57d49446460be53ea33e/cohorts/collection.py#L29-L46 | [
"def",
"to_string",
"(",
"self",
",",
"limit",
"=",
"None",
")",
":",
"header",
"=",
"self",
".",
"short_string",
"(",
")",
"if",
"len",
"(",
"self",
")",
"==",
"0",
":",
"return",
"header",
"contents",
"=",
"\"\"",
"element_lines",
"=",
"[",
"\" --... | 278b05e609e6c4d4a77c57d49446460be53ea33e |
train | UserStorageHandler.get_instance | :rtype: UserStorageHandler | bot/action/standard/userinfo.py | def get_instance(cls, state):
""":rtype: UserStorageHandler"""
if cls.instance is None:
cls.instance = UserStorageHandler(state)
return cls.instance | def get_instance(cls, state):
""":rtype: UserStorageHandler"""
if cls.instance is None:
cls.instance = UserStorageHandler(state)
return cls.instance | [
":",
"rtype",
":",
"UserStorageHandler"
] | alvarogzp/telegram-bot-framework | python | https://github.com/alvarogzp/telegram-bot-framework/blob/7b597a415c1901901c677976cb13100fc3083107/bot/action/standard/userinfo.py#L26-L30 | [
"def",
"get_instance",
"(",
"cls",
",",
"state",
")",
":",
"if",
"cls",
".",
"instance",
"is",
"None",
":",
"cls",
".",
"instance",
"=",
"UserStorageHandler",
"(",
"state",
")",
"return",
"cls",
".",
"instance"
] | 7b597a415c1901901c677976cb13100fc3083107 |
train | WorkersAction._get_active_threads_names | May contain sensitive info (like user ids). Use with care. | bot/action/standard/benchmark.py | def _get_active_threads_names():
"""May contain sensitive info (like user ids). Use with care."""
active_threads = threading.enumerate()
return FormattedText().join(
[
FormattedText().newline().normal(" - {name}").start_format().bold(name=thread.name).end_format()
... | def _get_active_threads_names():
"""May contain sensitive info (like user ids). Use with care."""
active_threads = threading.enumerate()
return FormattedText().join(
[
FormattedText().newline().normal(" - {name}").start_format().bold(name=thread.name).end_format()
... | [
"May",
"contain",
"sensitive",
"info",
"(",
"like",
"user",
"ids",
")",
".",
"Use",
"with",
"care",
"."
] | alvarogzp/telegram-bot-framework | python | https://github.com/alvarogzp/telegram-bot-framework/blob/7b597a415c1901901c677976cb13100fc3083107/bot/action/standard/benchmark.py#L164-L172 | [
"def",
"_get_active_threads_names",
"(",
")",
":",
"active_threads",
"=",
"threading",
".",
"enumerate",
"(",
")",
"return",
"FormattedText",
"(",
")",
".",
"join",
"(",
"[",
"FormattedText",
"(",
")",
".",
"newline",
"(",
")",
".",
"normal",
"(",
"\" - {n... | 7b597a415c1901901c677976cb13100fc3083107 |
train | WorkersAction._get_running_workers_names | May contain sensitive info (like user ids). Use with care. | bot/action/standard/benchmark.py | def _get_running_workers_names(running_workers: list):
"""May contain sensitive info (like user ids). Use with care."""
return FormattedText().join(
[
FormattedText().newline().normal(" - {name}").start_format().bold(name=worker.name).end_format()
for worker i... | def _get_running_workers_names(running_workers: list):
"""May contain sensitive info (like user ids). Use with care."""
return FormattedText().join(
[
FormattedText().newline().normal(" - {name}").start_format().bold(name=worker.name).end_format()
for worker i... | [
"May",
"contain",
"sensitive",
"info",
"(",
"like",
"user",
"ids",
")",
".",
"Use",
"with",
"care",
"."
] | alvarogzp/telegram-bot-framework | python | https://github.com/alvarogzp/telegram-bot-framework/blob/7b597a415c1901901c677976cb13100fc3083107/bot/action/standard/benchmark.py#L187-L194 | [
"def",
"_get_running_workers_names",
"(",
"running_workers",
":",
"list",
")",
":",
"return",
"FormattedText",
"(",
")",
".",
"join",
"(",
"[",
"FormattedText",
"(",
")",
".",
"newline",
"(",
")",
".",
"normal",
"(",
"\" - {name}\"",
")",
".",
"start_format"... | 7b597a415c1901901c677976cb13100fc3083107 |
train | WorkersAction._get_worker_pools_names | May contain sensitive info (like user ids). Use with care. | bot/action/standard/benchmark.py | def _get_worker_pools_names(worker_pools: list):
"""May contain sensitive info (like user ids). Use with care."""
return FormattedText().join(
[
FormattedText().newline().normal(" - {name}").start_format().bold(name=worker.name).end_format()
for worker in work... | def _get_worker_pools_names(worker_pools: list):
"""May contain sensitive info (like user ids). Use with care."""
return FormattedText().join(
[
FormattedText().newline().normal(" - {name}").start_format().bold(name=worker.name).end_format()
for worker in work... | [
"May",
"contain",
"sensitive",
"info",
"(",
"like",
"user",
"ids",
")",
".",
"Use",
"with",
"care",
"."
] | alvarogzp/telegram-bot-framework | python | https://github.com/alvarogzp/telegram-bot-framework/blob/7b597a415c1901901c677976cb13100fc3083107/bot/action/standard/benchmark.py#L209-L216 | [
"def",
"_get_worker_pools_names",
"(",
"worker_pools",
":",
"list",
")",
":",
"return",
"FormattedText",
"(",
")",
".",
"join",
"(",
"[",
"FormattedText",
"(",
")",
".",
"newline",
"(",
")",
".",
"normal",
"(",
"\" - {name}\"",
")",
".",
"start_format",
"(... | 7b597a415c1901901c677976cb13100fc3083107 |
train | UserInfoFormatter.format | :param member_info: If True, adds also chat member info. Please, note that this additional info requires
to make ONE api call. | bot/action/standard/info/formatter/user.py | def format(self, member_info: bool = False):
"""
:param member_info: If True, adds also chat member info. Please, note that this additional info requires
to make ONE api call.
"""
user = self.api_object
self.__format_user(user)
if member_info and self.chat.typ... | def format(self, member_info: bool = False):
"""
:param member_info: If True, adds also chat member info. Please, note that this additional info requires
to make ONE api call.
"""
user = self.api_object
self.__format_user(user)
if member_info and self.chat.typ... | [
":",
"param",
"member_info",
":",
"If",
"True",
"adds",
"also",
"chat",
"member",
"info",
".",
"Please",
"note",
"that",
"this",
"additional",
"info",
"requires",
"to",
"make",
"ONE",
"api",
"call",
"."
] | alvarogzp/telegram-bot-framework | python | https://github.com/alvarogzp/telegram-bot-framework/blob/7b597a415c1901901c677976cb13100fc3083107/bot/action/standard/info/formatter/user.py#L19-L28 | [
"def",
"format",
"(",
"self",
",",
"member_info",
":",
"bool",
"=",
"False",
")",
":",
"user",
"=",
"self",
".",
"api_object",
"self",
".",
"__format_user",
"(",
"user",
")",
"if",
"member_info",
"and",
"self",
".",
"chat",
".",
"type",
"!=",
"CHAT_TYP... | 7b597a415c1901901c677976cb13100fc3083107 |
train | UpdatesProcessor.safe_log_error | Log error failing silently on error | bot/bot.py | def safe_log_error(self, error: Exception, *info: str):
"""Log error failing silently on error"""
self.__do_safe(lambda: self.logger.error(error, *info)) | def safe_log_error(self, error: Exception, *info: str):
"""Log error failing silently on error"""
self.__do_safe(lambda: self.logger.error(error, *info)) | [
"Log",
"error",
"failing",
"silently",
"on",
"error"
] | alvarogzp/telegram-bot-framework | python | https://github.com/alvarogzp/telegram-bot-framework/blob/7b597a415c1901901c677976cb13100fc3083107/bot/bot.py#L173-L175 | [
"def",
"safe_log_error",
"(",
"self",
",",
"error",
":",
"Exception",
",",
"*",
"info",
":",
"str",
")",
":",
"self",
".",
"__do_safe",
"(",
"lambda",
":",
"self",
".",
"logger",
".",
"error",
"(",
"error",
",",
"*",
"info",
")",
")"
] | 7b597a415c1901901c677976cb13100fc3083107 |
train | UpdatesProcessor.safe_log_info | Log info failing silently on error | bot/bot.py | def safe_log_info(self, *info: str):
"""Log info failing silently on error"""
self.__do_safe(lambda: self.logger.info(*info)) | def safe_log_info(self, *info: str):
"""Log info failing silently on error"""
self.__do_safe(lambda: self.logger.info(*info)) | [
"Log",
"info",
"failing",
"silently",
"on",
"error"
] | alvarogzp/telegram-bot-framework | python | https://github.com/alvarogzp/telegram-bot-framework/blob/7b597a415c1901901c677976cb13100fc3083107/bot/bot.py#L177-L179 | [
"def",
"safe_log_info",
"(",
"self",
",",
"*",
"info",
":",
"str",
")",
":",
"self",
".",
"__do_safe",
"(",
"lambda",
":",
"self",
".",
"logger",
".",
"info",
"(",
"*",
"info",
")",
")"
] | 7b597a415c1901901c677976cb13100fc3083107 |
train | wald_wolfowitz | implements the wald-wolfowitz runs test:
http://en.wikipedia.org/wiki/Wald-Wolfowitz_runs_test
http://support.sas.com/kb/33/092.html
:param sequence: any iterable with at most 2 values. e.g.
'1001001'
[1, 0, 1, 0, 1]
'abaaabbba'
:rtype: a ... | skidmarks.py | def wald_wolfowitz(sequence):
"""
implements the wald-wolfowitz runs test:
http://en.wikipedia.org/wiki/Wald-Wolfowitz_runs_test
http://support.sas.com/kb/33/092.html
:param sequence: any iterable with at most 2 values. e.g.
'1001001'
[1, 0, 1, 0, 1]
... | def wald_wolfowitz(sequence):
"""
implements the wald-wolfowitz runs test:
http://en.wikipedia.org/wiki/Wald-Wolfowitz_runs_test
http://support.sas.com/kb/33/092.html
:param sequence: any iterable with at most 2 values. e.g.
'1001001'
[1, 0, 1, 0, 1]
... | [
"implements",
"the",
"wald",
"-",
"wolfowitz",
"runs",
"test",
":",
"http",
":",
"//",
"en",
".",
"wikipedia",
".",
"org",
"/",
"wiki",
"/",
"Wald",
"-",
"Wolfowitz_runs_test",
"http",
":",
"//",
"support",
".",
"sas",
".",
"com",
"/",
"kb",
"/",
"33... | brentp/skidmarks | python | https://github.com/brentp/skidmarks/blob/f63b9f1b822cb47991215b655155b5041e86ea39/skidmarks.py#L51-L99 | [
"def",
"wald_wolfowitz",
"(",
"sequence",
")",
":",
"R",
"=",
"n_runs",
"=",
"sum",
"(",
"1",
"for",
"s",
"in",
"groupby",
"(",
"sequence",
",",
"lambda",
"a",
":",
"a",
")",
")",
"n",
"=",
"float",
"(",
"sum",
"(",
"1",
"for",
"s",
"in",
"sequ... | f63b9f1b822cb47991215b655155b5041e86ea39 |
train | auto_correlation | test for the autocorrelation of a sequence between t and t - 1
as the 'auto_correlation' it is less likely that the sequence is
generated randomly.
:param sequence: any iterable with at most 2 values that can be turned
into a float via np.float . e.g.
'1001001'
... | skidmarks.py | def auto_correlation(sequence):
"""
test for the autocorrelation of a sequence between t and t - 1
as the 'auto_correlation' it is less likely that the sequence is
generated randomly.
:param sequence: any iterable with at most 2 values that can be turned
into a float via np.floa... | def auto_correlation(sequence):
"""
test for the autocorrelation of a sequence between t and t - 1
as the 'auto_correlation' it is less likely that the sequence is
generated randomly.
:param sequence: any iterable with at most 2 values that can be turned
into a float via np.floa... | [
"test",
"for",
"the",
"autocorrelation",
"of",
"a",
"sequence",
"between",
"t",
"and",
"t",
"-",
"1",
"as",
"the",
"auto_correlation",
"it",
"is",
"less",
"likely",
"that",
"the",
"sequence",
"is",
"generated",
"randomly",
".",
":",
"param",
"sequence",
":... | brentp/skidmarks | python | https://github.com/brentp/skidmarks/blob/f63b9f1b822cb47991215b655155b5041e86ea39/skidmarks.py#L102-L129 | [
"def",
"auto_correlation",
"(",
"sequence",
")",
":",
"if",
"isinstance",
"(",
"sequence",
",",
"basestring",
")",
":",
"sequence",
"=",
"map",
"(",
"int",
",",
"sequence",
")",
"seq",
"=",
"np",
".",
"array",
"(",
"list",
"(",
"sequence",
")",
",",
... | f63b9f1b822cb47991215b655155b5041e86ea39 |
train | _parse_header_links | Parse the links from a Link: header field.
.. todo:: Links with the same relation collide at the moment.
:param bytes value: The header value.
:rtype: `dict`
:return: A dictionary of parsed links, keyed by ``rel`` or ``url``. | src/txacme/client.py | def _parse_header_links(response):
"""
Parse the links from a Link: header field.
.. todo:: Links with the same relation collide at the moment.
:param bytes value: The header value.
:rtype: `dict`
:return: A dictionary of parsed links, keyed by ``rel`` or ``url``.
"""
values = respon... | def _parse_header_links(response):
"""
Parse the links from a Link: header field.
.. todo:: Links with the same relation collide at the moment.
:param bytes value: The header value.
:rtype: `dict`
:return: A dictionary of parsed links, keyed by ``rel`` or ``url``.
"""
values = respon... | [
"Parse",
"the",
"links",
"from",
"a",
"Link",
":",
"header",
"field",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L37-L69 | [
"def",
"_parse_header_links",
"(",
"response",
")",
":",
"values",
"=",
"response",
".",
"headers",
".",
"getRawHeaders",
"(",
"b'link'",
",",
"[",
"b''",
"]",
")",
"value",
"=",
"b','",
".",
"join",
"(",
"values",
")",
".",
"decode",
"(",
"'ascii'",
"... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | _default_client | Make a client if we didn't get one. | src/txacme/client.py | def _default_client(jws_client, reactor, key, alg):
"""
Make a client if we didn't get one.
"""
if jws_client is None:
pool = HTTPConnectionPool(reactor)
agent = Agent(reactor, pool=pool)
jws_client = JWSClient(HTTPClient(agent=agent), key, alg)
return jws_client | def _default_client(jws_client, reactor, key, alg):
"""
Make a client if we didn't get one.
"""
if jws_client is None:
pool = HTTPConnectionPool(reactor)
agent = Agent(reactor, pool=pool)
jws_client = JWSClient(HTTPClient(agent=agent), key, alg)
return jws_client | [
"Make",
"a",
"client",
"if",
"we",
"didn",
"t",
"get",
"one",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L72-L80 | [
"def",
"_default_client",
"(",
"jws_client",
",",
"reactor",
",",
"key",
",",
"alg",
")",
":",
"if",
"jws_client",
"is",
"None",
":",
"pool",
"=",
"HTTPConnectionPool",
"(",
"reactor",
")",
"agent",
"=",
"Agent",
"(",
"reactor",
",",
"pool",
"=",
"pool",... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | _find_supported_challenge | Find a challenge combination that consists of a single challenge that the
responder can satisfy.
:param ~acme.messages.AuthorizationResource auth: The authorization to
examine.
:type responder: List[`~txacme.interfaces.IResponder`]
:param responder: The possible responders to use.
:raises... | src/txacme/client.py | def _find_supported_challenge(authzr, responders):
"""
Find a challenge combination that consists of a single challenge that the
responder can satisfy.
:param ~acme.messages.AuthorizationResource auth: The authorization to
examine.
:type responder: List[`~txacme.interfaces.IResponder`]
... | def _find_supported_challenge(authzr, responders):
"""
Find a challenge combination that consists of a single challenge that the
responder can satisfy.
:param ~acme.messages.AuthorizationResource auth: The authorization to
examine.
:type responder: List[`~txacme.interfaces.IResponder`]
... | [
"Find",
"a",
"challenge",
"combination",
"that",
"consists",
"of",
"a",
"single",
"challenge",
"that",
"the",
"responder",
"can",
"satisfy",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L505-L531 | [
"def",
"_find_supported_challenge",
"(",
"authzr",
",",
"responders",
")",
":",
"matches",
"=",
"[",
"(",
"responder",
",",
"challbs",
"[",
"0",
"]",
")",
"for",
"challbs",
"in",
"authzr",
".",
"body",
".",
"resolved_combinations",
"for",
"responder",
"in",
... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | answer_challenge | Complete an authorization using a responder.
:param ~acme.messages.AuthorizationResource auth: The authorization to
complete.
:param .Client client: The ACME client.
:type responders: List[`~txacme.interfaces.IResponder`]
:param responders: A list of responders that can be used to complete the... | src/txacme/client.py | def answer_challenge(authzr, client, responders):
"""
Complete an authorization using a responder.
:param ~acme.messages.AuthorizationResource auth: The authorization to
complete.
:param .Client client: The ACME client.
:type responders: List[`~txacme.interfaces.IResponder`]
:param res... | def answer_challenge(authzr, client, responders):
"""
Complete an authorization using a responder.
:param ~acme.messages.AuthorizationResource auth: The authorization to
complete.
:param .Client client: The ACME client.
:type responders: List[`~txacme.interfaces.IResponder`]
:param res... | [
"Complete",
"an",
"authorization",
"using",
"a",
"responder",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L534-L565 | [
"def",
"answer_challenge",
"(",
"authzr",
",",
"client",
",",
"responders",
")",
":",
"responder",
",",
"challb",
"=",
"_find_supported_challenge",
"(",
"authzr",
",",
"responders",
")",
"response",
"=",
"challb",
".",
"response",
"(",
"client",
".",
"key",
... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | poll_until_valid | Poll an authorization until it is in a state other than pending or
processing.
:param ~acme.messages.AuthorizationResource auth: The authorization to
complete.
:param clock: The ``IReactorTime`` implementation to use; usually the
reactor, when not testing.
:param .Client client: The ACM... | src/txacme/client.py | def poll_until_valid(authzr, clock, client, timeout=300.0):
"""
Poll an authorization until it is in a state other than pending or
processing.
:param ~acme.messages.AuthorizationResource auth: The authorization to
complete.
:param clock: The ``IReactorTime`` implementation to use; usually t... | def poll_until_valid(authzr, clock, client, timeout=300.0):
"""
Poll an authorization until it is in a state other than pending or
processing.
:param ~acme.messages.AuthorizationResource auth: The authorization to
complete.
:param clock: The ``IReactorTime`` implementation to use; usually t... | [
"Poll",
"an",
"authorization",
"until",
"it",
"is",
"in",
"a",
"state",
"other",
"than",
"pending",
"or",
"processing",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L568-L609 | [
"def",
"poll_until_valid",
"(",
"authzr",
",",
"clock",
",",
"client",
",",
"timeout",
"=",
"300.0",
")",
":",
"def",
"repoll",
"(",
"result",
")",
":",
"authzr",
",",
"retry_after",
"=",
"result",
"if",
"authzr",
".",
"body",
".",
"status",
"in",
"{",... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | Client.from_url | Construct a client from an ACME directory at a given URL.
:param url: The ``twisted.python.url.URL`` to fetch the directory from.
See `txacme.urls` for constants for various well-known public
directories.
:param reactor: The Twisted reactor to use.
:param ~josepy.jwk.JWK... | src/txacme/client.py | def from_url(cls, reactor, url, key, alg=RS256, jws_client=None):
"""
Construct a client from an ACME directory at a given URL.
:param url: The ``twisted.python.url.URL`` to fetch the directory from.
See `txacme.urls` for constants for various well-known public
directori... | def from_url(cls, reactor, url, key, alg=RS256, jws_client=None):
"""
Construct a client from an ACME directory at a given URL.
:param url: The ``twisted.python.url.URL`` to fetch the directory from.
See `txacme.urls` for constants for various well-known public
directori... | [
"Construct",
"a",
"client",
"from",
"an",
"ACME",
"directory",
"at",
"a",
"given",
"URL",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L109-L138 | [
"def",
"from_url",
"(",
"cls",
",",
"reactor",
",",
"url",
",",
"key",
",",
"alg",
"=",
"RS256",
",",
"jws_client",
"=",
"None",
")",
":",
"action",
"=",
"LOG_ACME_CONSUME_DIRECTORY",
"(",
"url",
"=",
"url",
",",
"key_type",
"=",
"key",
".",
"typ",
"... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | Client.register | Create a new registration with the ACME server.
:param ~acme.messages.NewRegistration new_reg: The registration message
to use, or ``None`` to construct one.
:return: The registration resource.
:rtype: Deferred[`~acme.messages.RegistrationResource`] | src/txacme/client.py | def register(self, new_reg=None):
"""
Create a new registration with the ACME server.
:param ~acme.messages.NewRegistration new_reg: The registration message
to use, or ``None`` to construct one.
:return: The registration resource.
:rtype: Deferred[`~acme.messages.R... | def register(self, new_reg=None):
"""
Create a new registration with the ACME server.
:param ~acme.messages.NewRegistration new_reg: The registration message
to use, or ``None`` to construct one.
:return: The registration resource.
:rtype: Deferred[`~acme.messages.R... | [
"Create",
"a",
"new",
"registration",
"with",
"the",
"ACME",
"server",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L140-L161 | [
"def",
"register",
"(",
"self",
",",
"new_reg",
"=",
"None",
")",
":",
"if",
"new_reg",
"is",
"None",
":",
"new_reg",
"=",
"messages",
".",
"NewRegistration",
"(",
")",
"action",
"=",
"LOG_ACME_REGISTER",
"(",
"registration",
"=",
"new_reg",
")",
"with",
... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | Client._maybe_location | Get the Location: if there is one. | src/txacme/client.py | def _maybe_location(cls, response, uri=None):
"""
Get the Location: if there is one.
"""
location = response.headers.getRawHeaders(b'location', [None])[0]
if location is not None:
return location.decode('ascii')
return uri | def _maybe_location(cls, response, uri=None):
"""
Get the Location: if there is one.
"""
location = response.headers.getRawHeaders(b'location', [None])[0]
if location is not None:
return location.decode('ascii')
return uri | [
"Get",
"the",
"Location",
":",
"if",
"there",
"is",
"one",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L164-L171 | [
"def",
"_maybe_location",
"(",
"cls",
",",
"response",
",",
"uri",
"=",
"None",
")",
":",
"location",
"=",
"response",
".",
"headers",
".",
"getRawHeaders",
"(",
"b'location'",
",",
"[",
"None",
"]",
")",
"[",
"0",
"]",
"if",
"location",
"is",
"not",
... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | Client._maybe_registered | If the registration already exists, we should just load it. | src/txacme/client.py | def _maybe_registered(self, failure, new_reg):
"""
If the registration already exists, we should just load it.
"""
failure.trap(ServerError)
response = failure.value.response
if response.code == http.CONFLICT:
reg = new_reg.update(
resource=mes... | def _maybe_registered(self, failure, new_reg):
"""
If the registration already exists, we should just load it.
"""
failure.trap(ServerError)
response = failure.value.response
if response.code == http.CONFLICT:
reg = new_reg.update(
resource=mes... | [
"If",
"the",
"registration",
"already",
"exists",
"we",
"should",
"just",
"load",
"it",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L173-L184 | [
"def",
"_maybe_registered",
"(",
"self",
",",
"failure",
",",
"new_reg",
")",
":",
"failure",
".",
"trap",
"(",
"ServerError",
")",
"response",
"=",
"failure",
".",
"value",
".",
"response",
"if",
"response",
".",
"code",
"==",
"http",
".",
"CONFLICT",
"... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | Client.agree_to_tos | Accept the terms-of-service for a registration.
:param ~acme.messages.RegistrationResource regr: The registration to
update.
:return: The updated registration resource.
:rtype: Deferred[`~acme.messages.RegistrationResource`] | src/txacme/client.py | def agree_to_tos(self, regr):
"""
Accept the terms-of-service for a registration.
:param ~acme.messages.RegistrationResource regr: The registration to
update.
:return: The updated registration resource.
:rtype: Deferred[`~acme.messages.RegistrationResource`]
... | def agree_to_tos(self, regr):
"""
Accept the terms-of-service for a registration.
:param ~acme.messages.RegistrationResource regr: The registration to
update.
:return: The updated registration resource.
:rtype: Deferred[`~acme.messages.RegistrationResource`]
... | [
"Accept",
"the",
"terms",
"-",
"of",
"-",
"service",
"for",
"a",
"registration",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L186-L199 | [
"def",
"agree_to_tos",
"(",
"self",
",",
"regr",
")",
":",
"return",
"self",
".",
"update_registration",
"(",
"regr",
".",
"update",
"(",
"body",
"=",
"regr",
".",
"body",
".",
"update",
"(",
"agreement",
"=",
"regr",
".",
"terms_of_service",
")",
")",
... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | Client.update_registration | Submit a registration to the server to update it.
:param ~acme.messages.RegistrationResource regr: The registration to
update. Can be a :class:`~acme.messages.NewRegistration` instead,
in order to create a new registration.
:param str uri: The url to submit to. Must be
... | src/txacme/client.py | def update_registration(self, regr, uri=None):
"""
Submit a registration to the server to update it.
:param ~acme.messages.RegistrationResource regr: The registration to
update. Can be a :class:`~acme.messages.NewRegistration` instead,
in order to create a new registrat... | def update_registration(self, regr, uri=None):
"""
Submit a registration to the server to update it.
:param ~acme.messages.RegistrationResource regr: The registration to
update. Can be a :class:`~acme.messages.NewRegistration` instead,
in order to create a new registrat... | [
"Submit",
"a",
"registration",
"to",
"the",
"server",
"to",
"update",
"it",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L201-L228 | [
"def",
"update_registration",
"(",
"self",
",",
"regr",
",",
"uri",
"=",
"None",
")",
":",
"if",
"uri",
"is",
"None",
":",
"uri",
"=",
"regr",
".",
"uri",
"if",
"isinstance",
"(",
"regr",
",",
"messages",
".",
"RegistrationResource",
")",
":",
"message... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | Client._parse_regr_response | Parse a registration response from the server. | src/txacme/client.py | def _parse_regr_response(self, response, uri=None, new_authzr_uri=None,
terms_of_service=None):
"""
Parse a registration response from the server.
"""
links = _parse_header_links(response)
if u'terms-of-service' in links:
terms_of_service ... | def _parse_regr_response(self, response, uri=None, new_authzr_uri=None,
terms_of_service=None):
"""
Parse a registration response from the server.
"""
links = _parse_header_links(response)
if u'terms-of-service' in links:
terms_of_service ... | [
"Parse",
"a",
"registration",
"response",
"from",
"the",
"server",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L230-L251 | [
"def",
"_parse_regr_response",
"(",
"self",
",",
"response",
",",
"uri",
"=",
"None",
",",
"new_authzr_uri",
"=",
"None",
",",
"terms_of_service",
"=",
"None",
")",
":",
"links",
"=",
"_parse_header_links",
"(",
"response",
")",
"if",
"u'terms-of-service'",
"i... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | Client._check_regr | Check that a registration response contains the registration we were
expecting. | src/txacme/client.py | def _check_regr(self, regr, new_reg):
"""
Check that a registration response contains the registration we were
expecting.
"""
body = getattr(new_reg, 'body', new_reg)
for k, v in body.items():
if k == 'resource' or not v:
continue
i... | def _check_regr(self, regr, new_reg):
"""
Check that a registration response contains the registration we were
expecting.
"""
body = getattr(new_reg, 'body', new_reg)
for k, v in body.items():
if k == 'resource' or not v:
continue
i... | [
"Check",
"that",
"a",
"registration",
"response",
"contains",
"the",
"registration",
"we",
"were",
"expecting",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L253-L266 | [
"def",
"_check_regr",
"(",
"self",
",",
"regr",
",",
"new_reg",
")",
":",
"body",
"=",
"getattr",
"(",
"new_reg",
",",
"'body'",
",",
"new_reg",
")",
"for",
"k",
",",
"v",
"in",
"body",
".",
"items",
"(",
")",
":",
"if",
"k",
"==",
"'resource'",
... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | Client.request_challenges | Create a new authorization.
:param ~acme.messages.Identifier identifier: The identifier to
authorize.
:return: The new authorization resource.
:rtype: Deferred[`~acme.messages.AuthorizationResource`] | src/txacme/client.py | def request_challenges(self, identifier):
"""
Create a new authorization.
:param ~acme.messages.Identifier identifier: The identifier to
authorize.
:return: The new authorization resource.
:rtype: Deferred[`~acme.messages.AuthorizationResource`]
"""
... | def request_challenges(self, identifier):
"""
Create a new authorization.
:param ~acme.messages.Identifier identifier: The identifier to
authorize.
:return: The new authorization resource.
:rtype: Deferred[`~acme.messages.AuthorizationResource`]
"""
... | [
"Create",
"a",
"new",
"authorization",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L268-L289 | [
"def",
"request_challenges",
"(",
"self",
",",
"identifier",
")",
":",
"action",
"=",
"LOG_ACME_CREATE_AUTHORIZATION",
"(",
"identifier",
"=",
"identifier",
")",
"with",
"action",
".",
"context",
"(",
")",
":",
"message",
"=",
"messages",
".",
"NewAuthorization"... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | Client._expect_response | Ensure we got the expected response code. | src/txacme/client.py | def _expect_response(cls, response, code):
"""
Ensure we got the expected response code.
"""
if response.code != code:
raise errors.ClientError(
'Expected {!r} response but got {!r}'.format(
code, response.code))
return response | def _expect_response(cls, response, code):
"""
Ensure we got the expected response code.
"""
if response.code != code:
raise errors.ClientError(
'Expected {!r} response but got {!r}'.format(
code, response.code))
return response | [
"Ensure",
"we",
"got",
"the",
"expected",
"response",
"code",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L292-L300 | [
"def",
"_expect_response",
"(",
"cls",
",",
"response",
",",
"code",
")",
":",
"if",
"response",
".",
"code",
"!=",
"code",
":",
"raise",
"errors",
".",
"ClientError",
"(",
"'Expected {!r} response but got {!r}'",
".",
"format",
"(",
"code",
",",
"response",
... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | Client._parse_authorization | Parse an authorization resource. | src/txacme/client.py | def _parse_authorization(cls, response, uri=None):
"""
Parse an authorization resource.
"""
links = _parse_header_links(response)
try:
new_cert_uri = links[u'next'][u'url']
except KeyError:
raise errors.ClientError('"next" link missing')
re... | def _parse_authorization(cls, response, uri=None):
"""
Parse an authorization resource.
"""
links = _parse_header_links(response)
try:
new_cert_uri = links[u'next'][u'url']
except KeyError:
raise errors.ClientError('"next" link missing')
re... | [
"Parse",
"an",
"authorization",
"resource",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L303-L319 | [
"def",
"_parse_authorization",
"(",
"cls",
",",
"response",
",",
"uri",
"=",
"None",
")",
":",
"links",
"=",
"_parse_header_links",
"(",
"response",
")",
"try",
":",
"new_cert_uri",
"=",
"links",
"[",
"u'next'",
"]",
"[",
"u'url'",
"]",
"except",
"KeyError... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | Client._check_authorization | Check that the authorization we got is the one we expected. | src/txacme/client.py | def _check_authorization(cls, authzr, identifier):
"""
Check that the authorization we got is the one we expected.
"""
if authzr.body.identifier != identifier:
raise errors.UnexpectedUpdate(authzr)
return authzr | def _check_authorization(cls, authzr, identifier):
"""
Check that the authorization we got is the one we expected.
"""
if authzr.body.identifier != identifier:
raise errors.UnexpectedUpdate(authzr)
return authzr | [
"Check",
"that",
"the",
"authorization",
"we",
"got",
"is",
"the",
"one",
"we",
"expected",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L322-L328 | [
"def",
"_check_authorization",
"(",
"cls",
",",
"authzr",
",",
"identifier",
")",
":",
"if",
"authzr",
".",
"body",
".",
"identifier",
"!=",
"identifier",
":",
"raise",
"errors",
".",
"UnexpectedUpdate",
"(",
"authzr",
")",
"return",
"authzr"
] | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | Client.answer_challenge | Respond to an authorization challenge.
:param ~acme.messages.ChallengeBody challenge_body: The challenge being
responded to.
:param ~acme.challenges.ChallengeResponse response: The response to the
challenge.
:return: The updated challenge resource.
:rtype: Defer... | src/txacme/client.py | def answer_challenge(self, challenge_body, response):
"""
Respond to an authorization challenge.
:param ~acme.messages.ChallengeBody challenge_body: The challenge being
responded to.
:param ~acme.challenges.ChallengeResponse response: The response to the
challeng... | def answer_challenge(self, challenge_body, response):
"""
Respond to an authorization challenge.
:param ~acme.messages.ChallengeBody challenge_body: The challenge being
responded to.
:param ~acme.challenges.ChallengeResponse response: The response to the
challeng... | [
"Respond",
"to",
"an",
"authorization",
"challenge",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L330-L353 | [
"def",
"answer_challenge",
"(",
"self",
",",
"challenge_body",
",",
"response",
")",
":",
"action",
"=",
"LOG_ACME_ANSWER_CHALLENGE",
"(",
"challenge_body",
"=",
"challenge_body",
",",
"response",
"=",
"response",
")",
"with",
"action",
".",
"context",
"(",
")",... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | Client._parse_challenge | Parse a challenge resource. | src/txacme/client.py | def _parse_challenge(cls, response):
"""
Parse a challenge resource.
"""
links = _parse_header_links(response)
try:
authzr_uri = links['up']['url']
except KeyError:
raise errors.ClientError('"up" link missing')
return (
response... | def _parse_challenge(cls, response):
"""
Parse a challenge resource.
"""
links = _parse_header_links(response)
try:
authzr_uri = links['up']['url']
except KeyError:
raise errors.ClientError('"up" link missing')
return (
response... | [
"Parse",
"a",
"challenge",
"resource",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L356-L371 | [
"def",
"_parse_challenge",
"(",
"cls",
",",
"response",
")",
":",
"links",
"=",
"_parse_header_links",
"(",
"response",
")",
"try",
":",
"authzr_uri",
"=",
"links",
"[",
"'up'",
"]",
"[",
"'url'",
"]",
"except",
"KeyError",
":",
"raise",
"errors",
".",
"... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | Client._check_challenge | Check that the challenge resource we got is the one we expected. | src/txacme/client.py | def _check_challenge(cls, challenge, challenge_body):
"""
Check that the challenge resource we got is the one we expected.
"""
if challenge.uri != challenge_body.uri:
raise errors.UnexpectedUpdate(challenge.uri)
return challenge | def _check_challenge(cls, challenge, challenge_body):
"""
Check that the challenge resource we got is the one we expected.
"""
if challenge.uri != challenge_body.uri:
raise errors.UnexpectedUpdate(challenge.uri)
return challenge | [
"Check",
"that",
"the",
"challenge",
"resource",
"we",
"got",
"is",
"the",
"one",
"we",
"expected",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L374-L380 | [
"def",
"_check_challenge",
"(",
"cls",
",",
"challenge",
",",
"challenge_body",
")",
":",
"if",
"challenge",
".",
"uri",
"!=",
"challenge_body",
".",
"uri",
":",
"raise",
"errors",
".",
"UnexpectedUpdate",
"(",
"challenge",
".",
"uri",
")",
"return",
"challe... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | Client.poll | Update an authorization from the server (usually to check its status). | src/txacme/client.py | def poll(self, authzr):
"""
Update an authorization from the server (usually to check its status).
"""
action = LOG_ACME_POLL_AUTHORIZATION(authorization=authzr)
with action.context():
return (
DeferredContext(self._client.get(authzr.uri))
... | def poll(self, authzr):
"""
Update an authorization from the server (usually to check its status).
"""
action = LOG_ACME_POLL_AUTHORIZATION(authorization=authzr)
with action.context():
return (
DeferredContext(self._client.get(authzr.uri))
... | [
"Update",
"an",
"authorization",
"from",
"the",
"server",
"(",
"usually",
"to",
"check",
"its",
"status",
")",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L382-L406 | [
"def",
"poll",
"(",
"self",
",",
"authzr",
")",
":",
"action",
"=",
"LOG_ACME_POLL_AUTHORIZATION",
"(",
"authorization",
"=",
"authzr",
")",
"with",
"action",
".",
"context",
"(",
")",
":",
"return",
"(",
"DeferredContext",
"(",
"self",
".",
"_client",
"."... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | Client.retry_after | Parse the Retry-After value from a response. | src/txacme/client.py | def retry_after(cls, response, default=5, _now=time.time):
"""
Parse the Retry-After value from a response.
"""
val = response.headers.getRawHeaders(b'retry-after', [default])[0]
try:
return int(val)
except ValueError:
return http.stringToDatetime(... | def retry_after(cls, response, default=5, _now=time.time):
"""
Parse the Retry-After value from a response.
"""
val = response.headers.getRawHeaders(b'retry-after', [default])[0]
try:
return int(val)
except ValueError:
return http.stringToDatetime(... | [
"Parse",
"the",
"Retry",
"-",
"After",
"value",
"from",
"a",
"response",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L409-L417 | [
"def",
"retry_after",
"(",
"cls",
",",
"response",
",",
"default",
"=",
"5",
",",
"_now",
"=",
"time",
".",
"time",
")",
":",
"val",
"=",
"response",
".",
"headers",
".",
"getRawHeaders",
"(",
"b'retry-after'",
",",
"[",
"default",
"]",
")",
"[",
"0"... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | Client.request_issuance | Request a certificate.
Authorizations should have already been completed for all of the names
requested in the CSR.
Note that unlike `acme.client.Client.request_issuance`, the certificate
resource will have the body data as raw bytes.
.. seealso:: `txacme.util.csr_for_names`
... | src/txacme/client.py | def request_issuance(self, csr):
"""
Request a certificate.
Authorizations should have already been completed for all of the names
requested in the CSR.
Note that unlike `acme.client.Client.request_issuance`, the certificate
resource will have the body data as raw bytes... | def request_issuance(self, csr):
"""
Request a certificate.
Authorizations should have already been completed for all of the names
requested in the CSR.
Note that unlike `acme.client.Client.request_issuance`, the certificate
resource will have the body data as raw bytes... | [
"Request",
"a",
"certificate",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L419-L451 | [
"def",
"request_issuance",
"(",
"self",
",",
"csr",
")",
":",
"action",
"=",
"LOG_ACME_REQUEST_CERTIFICATE",
"(",
")",
"with",
"action",
".",
"context",
"(",
")",
":",
"return",
"(",
"DeferredContext",
"(",
"self",
".",
"_client",
".",
"post",
"(",
"self",... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | Client._parse_certificate | Parse a response containing a certificate resource. | src/txacme/client.py | def _parse_certificate(cls, response):
"""
Parse a response containing a certificate resource.
"""
links = _parse_header_links(response)
try:
cert_chain_uri = links[u'up'][u'url']
except KeyError:
cert_chain_uri = None
return (
... | def _parse_certificate(cls, response):
"""
Parse a response containing a certificate resource.
"""
links = _parse_header_links(response)
try:
cert_chain_uri = links[u'up'][u'url']
except KeyError:
cert_chain_uri = None
return (
... | [
"Parse",
"a",
"response",
"containing",
"a",
"certificate",
"resource",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L454-L470 | [
"def",
"_parse_certificate",
"(",
"cls",
",",
"response",
")",
":",
"links",
"=",
"_parse_header_links",
"(",
"response",
")",
"try",
":",
"cert_chain_uri",
"=",
"links",
"[",
"u'up'",
"]",
"[",
"u'url'",
"]",
"except",
"KeyError",
":",
"cert_chain_uri",
"="... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | Client.fetch_chain | Fetch the intermediary chain for a certificate.
:param acme.messages.CertificateResource certr: The certificate to
fetch the chain for.
:param int max_length: The maximum length of the chain that will be
fetched.
:rtype: Deferred[List[`acme.messages.CertificateResource`... | src/txacme/client.py | def fetch_chain(self, certr, max_length=10):
"""
Fetch the intermediary chain for a certificate.
:param acme.messages.CertificateResource certr: The certificate to
fetch the chain for.
:param int max_length: The maximum length of the chain that will be
fetched.
... | def fetch_chain(self, certr, max_length=10):
"""
Fetch the intermediary chain for a certificate.
:param acme.messages.CertificateResource certr: The certificate to
fetch the chain for.
:param int max_length: The maximum length of the chain that will be
fetched.
... | [
"Fetch",
"the",
"intermediary",
"chain",
"for",
"a",
"certificate",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L472-L502 | [
"def",
"fetch_chain",
"(",
"self",
",",
"certr",
",",
"max_length",
"=",
"10",
")",
":",
"action",
"=",
"LOG_ACME_FETCH_CHAIN",
"(",
")",
"with",
"action",
".",
"context",
"(",
")",
":",
"if",
"certr",
".",
"cert_chain_uri",
"is",
"None",
":",
"return",
... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | JWSClient._wrap_in_jws | Wrap ``JSONDeSerializable`` object in JWS.
.. todo:: Implement ``acmePath``.
:param ~josepy.interfaces.JSONDeSerializable obj:
:param bytes nonce:
:rtype: `bytes`
:return: JSON-encoded data | src/txacme/client.py | def _wrap_in_jws(self, nonce, obj):
"""
Wrap ``JSONDeSerializable`` object in JWS.
.. todo:: Implement ``acmePath``.
:param ~josepy.interfaces.JSONDeSerializable obj:
:param bytes nonce:
:rtype: `bytes`
:return: JSON-encoded data
"""
with LOG_J... | def _wrap_in_jws(self, nonce, obj):
"""
Wrap ``JSONDeSerializable`` object in JWS.
.. todo:: Implement ``acmePath``.
:param ~josepy.interfaces.JSONDeSerializable obj:
:param bytes nonce:
:rtype: `bytes`
:return: JSON-encoded data
"""
with LOG_J... | [
"Wrap",
"JSONDeSerializable",
"object",
"in",
"JWS",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L678-L697 | [
"def",
"_wrap_in_jws",
"(",
"self",
",",
"nonce",
",",
"obj",
")",
":",
"with",
"LOG_JWS_SIGN",
"(",
"key_type",
"=",
"self",
".",
"_key",
".",
"typ",
",",
"alg",
"=",
"self",
".",
"_alg",
".",
"name",
",",
"nonce",
"=",
"nonce",
")",
":",
"jobj",
... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | JWSClient._check_response | Check response content and its type.
.. note::
Unlike :mod:`acme.client`, checking is strict.
:param bytes content_type: Expected Content-Type response header. If
the response Content-Type does not match, :exc:`ClientError` is
raised.
:raises .ServerErro... | src/txacme/client.py | def _check_response(cls, response, content_type=JSON_CONTENT_TYPE):
"""
Check response content and its type.
.. note::
Unlike :mod:`acme.client`, checking is strict.
:param bytes content_type: Expected Content-Type response header. If
the response Content-Typ... | def _check_response(cls, response, content_type=JSON_CONTENT_TYPE):
"""
Check response content and its type.
.. note::
Unlike :mod:`acme.client`, checking is strict.
:param bytes content_type: Expected Content-Type response header. If
the response Content-Typ... | [
"Check",
"response",
"content",
"and",
"its",
"type",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L700-L748 | [
"def",
"_check_response",
"(",
"cls",
",",
"response",
",",
"content_type",
"=",
"JSON_CONTENT_TYPE",
")",
":",
"def",
"_got_failure",
"(",
"f",
")",
":",
"f",
".",
"trap",
"(",
"ValueError",
")",
"return",
"None",
"def",
"_got_json",
"(",
"jobj",
")",
"... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | JWSClient._send_request | Send HTTP request.
:param str method: The HTTP method to use.
:param str url: The URL to make the request to.
:return: Deferred firing with the HTTP response. | src/txacme/client.py | def _send_request(self, method, url, *args, **kwargs):
"""
Send HTTP request.
:param str method: The HTTP method to use.
:param str url: The URL to make the request to.
:return: Deferred firing with the HTTP response.
"""
action = LOG_JWS_REQUEST(url=url)
... | def _send_request(self, method, url, *args, **kwargs):
"""
Send HTTP request.
:param str method: The HTTP method to use.
:param str url: The URL to make the request to.
:return: Deferred firing with the HTTP response.
"""
action = LOG_JWS_REQUEST(url=url)
... | [
"Send",
"HTTP",
"request",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L750-L772 | [
"def",
"_send_request",
"(",
"self",
",",
"method",
",",
"url",
",",
"*",
"args",
",",
"*",
"*",
"kwargs",
")",
":",
"action",
"=",
"LOG_JWS_REQUEST",
"(",
"url",
"=",
"url",
")",
"with",
"action",
".",
"context",
"(",
")",
":",
"headers",
"=",
"kw... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | JWSClient.head | Send HEAD request without checking the response.
Note that ``_check_response`` is not called, as there will be no
response body to check.
:param str url: The URL to make the request to. | src/txacme/client.py | def head(self, url, *args, **kwargs):
"""
Send HEAD request without checking the response.
Note that ``_check_response`` is not called, as there will be no
response body to check.
:param str url: The URL to make the request to.
"""
with LOG_JWS_HEAD().context():... | def head(self, url, *args, **kwargs):
"""
Send HEAD request without checking the response.
Note that ``_check_response`` is not called, as there will be no
response body to check.
:param str url: The URL to make the request to.
"""
with LOG_JWS_HEAD().context():... | [
"Send",
"HEAD",
"request",
"without",
"checking",
"the",
"response",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L774-L786 | [
"def",
"head",
"(",
"self",
",",
"url",
",",
"*",
"args",
",",
"*",
"*",
"kwargs",
")",
":",
"with",
"LOG_JWS_HEAD",
"(",
")",
".",
"context",
"(",
")",
":",
"return",
"DeferredContext",
"(",
"self",
".",
"_send_request",
"(",
"u'HEAD'",
",",
"url",
... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | JWSClient.get | Send GET request and check response.
:param str method: The HTTP method to use.
:param str url: The URL to make the request to.
:raises txacme.client.ServerError: If server response body carries HTTP
Problem (draft-ietf-appsawg-http-problem-00).
:raises acme.errors.ClientEr... | src/txacme/client.py | def get(self, url, content_type=JSON_CONTENT_TYPE, **kwargs):
"""
Send GET request and check response.
:param str method: The HTTP method to use.
:param str url: The URL to make the request to.
:raises txacme.client.ServerError: If server response body carries HTTP
... | def get(self, url, content_type=JSON_CONTENT_TYPE, **kwargs):
"""
Send GET request and check response.
:param str method: The HTTP method to use.
:param str url: The URL to make the request to.
:raises txacme.client.ServerError: If server response body carries HTTP
... | [
"Send",
"GET",
"request",
"and",
"check",
"response",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L788-L805 | [
"def",
"get",
"(",
"self",
",",
"url",
",",
"content_type",
"=",
"JSON_CONTENT_TYPE",
",",
"*",
"*",
"kwargs",
")",
":",
"with",
"LOG_JWS_GET",
"(",
")",
".",
"context",
"(",
")",
":",
"return",
"(",
"DeferredContext",
"(",
"self",
".",
"_send_request",
... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | JWSClient._add_nonce | Store a nonce from a response we received.
:param twisted.web.iweb.IResponse response: The HTTP response.
:return: The response, unmodified. | src/txacme/client.py | def _add_nonce(self, response):
"""
Store a nonce from a response we received.
:param twisted.web.iweb.IResponse response: The HTTP response.
:return: The response, unmodified.
"""
nonce = response.headers.getRawHeaders(
REPLAY_NONCE_HEADER, [None])[0]
... | def _add_nonce(self, response):
"""
Store a nonce from a response we received.
:param twisted.web.iweb.IResponse response: The HTTP response.
:return: The response, unmodified.
"""
nonce = response.headers.getRawHeaders(
REPLAY_NONCE_HEADER, [None])[0]
... | [
"Store",
"a",
"nonce",
"from",
"a",
"response",
"we",
"received",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L807-L829 | [
"def",
"_add_nonce",
"(",
"self",
",",
"response",
")",
":",
"nonce",
"=",
"response",
".",
"headers",
".",
"getRawHeaders",
"(",
"REPLAY_NONCE_HEADER",
",",
"[",
"None",
"]",
")",
"[",
"0",
"]",
"with",
"LOG_JWS_ADD_NONCE",
"(",
"raw_nonce",
"=",
"nonce",... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | JWSClient._get_nonce | Get a nonce to use in a request, removing it from the nonces on hand. | src/txacme/client.py | def _get_nonce(self, url):
"""
Get a nonce to use in a request, removing it from the nonces on hand.
"""
action = LOG_JWS_GET_NONCE()
if len(self._nonces) > 0:
with action:
nonce = self._nonces.pop()
action.add_success_fields(nonce=nonc... | def _get_nonce(self, url):
"""
Get a nonce to use in a request, removing it from the nonces on hand.
"""
action = LOG_JWS_GET_NONCE()
if len(self._nonces) > 0:
with action:
nonce = self._nonces.pop()
action.add_success_fields(nonce=nonc... | [
"Get",
"a",
"nonce",
"to",
"use",
"in",
"a",
"request",
"removing",
"it",
"from",
"the",
"nonces",
"on",
"hand",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L831-L849 | [
"def",
"_get_nonce",
"(",
"self",
",",
"url",
")",
":",
"action",
"=",
"LOG_JWS_GET_NONCE",
"(",
")",
"if",
"len",
"(",
"self",
".",
"_nonces",
")",
">",
"0",
":",
"with",
"action",
":",
"nonce",
"=",
"self",
".",
"_nonces",
".",
"pop",
"(",
")",
... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | JWSClient._post | POST an object and check the response.
:param str url: The URL to request.
:param ~josepy.interfaces.JSONDeSerializable obj: The serializable
payload of the request.
:param bytes content_type: The expected content type of the response.
:raises txacme.client.ServerError: If ... | src/txacme/client.py | def _post(self, url, obj, content_type, **kwargs):
"""
POST an object and check the response.
:param str url: The URL to request.
:param ~josepy.interfaces.JSONDeSerializable obj: The serializable
payload of the request.
:param bytes content_type: The expected conten... | def _post(self, url, obj, content_type, **kwargs):
"""
POST an object and check the response.
:param str url: The URL to request.
:param ~josepy.interfaces.JSONDeSerializable obj: The serializable
payload of the request.
:param bytes content_type: The expected conten... | [
"POST",
"an",
"object",
"and",
"check",
"the",
"response",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L851-L875 | [
"def",
"_post",
"(",
"self",
",",
"url",
",",
"obj",
",",
"content_type",
",",
"*",
"*",
"kwargs",
")",
":",
"with",
"LOG_JWS_POST",
"(",
")",
".",
"context",
"(",
")",
":",
"headers",
"=",
"kwargs",
".",
"setdefault",
"(",
"'headers'",
",",
"Headers... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | JWSClient.post | POST an object and check the response. Retry once if a badNonce error
is received.
:param str url: The URL to request.
:param ~josepy.interfaces.JSONDeSerializable obj: The serializable
payload of the request.
:param bytes content_type: The expected content type of the respo... | src/txacme/client.py | def post(self, url, obj, content_type=JSON_CONTENT_TYPE, **kwargs):
"""
POST an object and check the response. Retry once if a badNonce error
is received.
:param str url: The URL to request.
:param ~josepy.interfaces.JSONDeSerializable obj: The serializable
payload o... | def post(self, url, obj, content_type=JSON_CONTENT_TYPE, **kwargs):
"""
POST an object and check the response. Retry once if a badNonce error
is received.
:param str url: The URL to request.
:param ~josepy.interfaces.JSONDeSerializable obj: The serializable
payload o... | [
"POST",
"an",
"object",
"and",
"check",
"the",
"response",
".",
"Retry",
"once",
"if",
"a",
"badNonce",
"error",
"is",
"received",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/client.py#L877-L907 | [
"def",
"post",
"(",
"self",
",",
"url",
",",
"obj",
",",
"content_type",
"=",
"JSON_CONTENT_TYPE",
",",
"*",
"*",
"kwargs",
")",
":",
"def",
"retry_bad_nonce",
"(",
"f",
")",
":",
"f",
".",
"trap",
"(",
"ServerError",
")",
"# The current RFC draft defines ... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | _daemon_thread | Create a `threading.Thread`, but always set ``daemon``. | src/txacme/challenges/_libcloud.py | def _daemon_thread(*a, **kw):
"""
Create a `threading.Thread`, but always set ``daemon``.
"""
thread = Thread(*a, **kw)
thread.daemon = True
return thread | def _daemon_thread(*a, **kw):
"""
Create a `threading.Thread`, but always set ``daemon``.
"""
thread = Thread(*a, **kw)
thread.daemon = True
return thread | [
"Create",
"a",
"threading",
".",
"Thread",
"but",
"always",
"set",
"daemon",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/challenges/_libcloud.py#L18-L24 | [
"def",
"_daemon_thread",
"(",
"*",
"a",
",",
"*",
"*",
"kw",
")",
":",
"thread",
"=",
"Thread",
"(",
"*",
"a",
",",
"*",
"*",
"kw",
")",
"thread",
".",
"daemon",
"=",
"True",
"return",
"thread"
] | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | _defer_to_worker | Run a task in a worker, delivering the result as a ``Deferred`` in the
reactor thread. | src/txacme/challenges/_libcloud.py | def _defer_to_worker(deliver, worker, work, *args, **kwargs):
"""
Run a task in a worker, delivering the result as a ``Deferred`` in the
reactor thread.
"""
deferred = Deferred()
def wrapped_work():
try:
result = work(*args, **kwargs)
except BaseException:
... | def _defer_to_worker(deliver, worker, work, *args, **kwargs):
"""
Run a task in a worker, delivering the result as a ``Deferred`` in the
reactor thread.
"""
deferred = Deferred()
def wrapped_work():
try:
result = work(*args, **kwargs)
except BaseException:
... | [
"Run",
"a",
"task",
"in",
"a",
"worker",
"delivering",
"the",
"result",
"as",
"a",
"Deferred",
"in",
"the",
"reactor",
"thread",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/challenges/_libcloud.py#L27-L43 | [
"def",
"_defer_to_worker",
"(",
"deliver",
",",
"worker",
",",
"work",
",",
"*",
"args",
",",
"*",
"*",
"kwargs",
")",
":",
"deferred",
"=",
"Deferred",
"(",
")",
"def",
"wrapped_work",
"(",
")",
":",
"try",
":",
"result",
"=",
"work",
"(",
"*",
"a... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | _split_zone | Split the zone portion off from a DNS label.
:param str server_name: The full DNS label.
:param str zone_name: The zone name suffix. | src/txacme/challenges/_libcloud.py | def _split_zone(server_name, zone_name):
"""
Split the zone portion off from a DNS label.
:param str server_name: The full DNS label.
:param str zone_name: The zone name suffix.
"""
server_name = server_name.rstrip(u'.')
zone_name = zone_name.rstrip(u'.')
if not (server_name == zone_nam... | def _split_zone(server_name, zone_name):
"""
Split the zone portion off from a DNS label.
:param str server_name: The full DNS label.
:param str zone_name: The zone name suffix.
"""
server_name = server_name.rstrip(u'.')
zone_name = zone_name.rstrip(u'.')
if not (server_name == zone_nam... | [
"Split",
"the",
"zone",
"portion",
"off",
"from",
"a",
"DNS",
"label",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/challenges/_libcloud.py#L46-L58 | [
"def",
"_split_zone",
"(",
"server_name",
",",
"zone_name",
")",
":",
"server_name",
"=",
"server_name",
".",
"rstrip",
"(",
"u'.'",
")",
"zone_name",
"=",
"zone_name",
".",
"rstrip",
"(",
"u'.'",
")",
"if",
"not",
"(",
"server_name",
"==",
"zone_name",
"o... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | _get_existing | Get existing validation records. | src/txacme/challenges/_libcloud.py | def _get_existing(driver, zone_name, server_name, validation):
"""
Get existing validation records.
"""
if zone_name is None:
zones = sorted(
(z for z
in driver.list_zones()
if server_name.rstrip(u'.')
.endswith(u'.' + z.domain.rstrip(u'.')))... | def _get_existing(driver, zone_name, server_name, validation):
"""
Get existing validation records.
"""
if zone_name is None:
zones = sorted(
(z for z
in driver.list_zones()
if server_name.rstrip(u'.')
.endswith(u'.' + z.domain.rstrip(u'.')))... | [
"Get",
"existing",
"validation",
"records",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/challenges/_libcloud.py#L61-L90 | [
"def",
"_get_existing",
"(",
"driver",
",",
"zone_name",
",",
"server_name",
",",
"validation",
")",
":",
"if",
"zone_name",
"is",
"None",
":",
"zones",
"=",
"sorted",
"(",
"(",
"z",
"for",
"z",
"in",
"driver",
".",
"list_zones",
"(",
")",
"if",
"serve... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | _validation | Get the validation value for a challenge response. | src/txacme/challenges/_libcloud.py | def _validation(response):
"""
Get the validation value for a challenge response.
"""
h = hashlib.sha256(response.key_authorization.encode("utf-8"))
return b64encode(h.digest()).decode() | def _validation(response):
"""
Get the validation value for a challenge response.
"""
h = hashlib.sha256(response.key_authorization.encode("utf-8"))
return b64encode(h.digest()).decode() | [
"Get",
"the",
"validation",
"value",
"for",
"a",
"challenge",
"response",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/challenges/_libcloud.py#L93-L98 | [
"def",
"_validation",
"(",
"response",
")",
":",
"h",
"=",
"hashlib",
".",
"sha256",
"(",
"response",
".",
"key_authorization",
".",
"encode",
"(",
"\"utf-8\"",
")",
")",
"return",
"b64encode",
"(",
"h",
".",
"digest",
"(",
")",
")",
".",
"decode",
"("... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | load_or_create_client_key | Load the client key from a directory, creating it if it does not exist.
.. note:: The client key that will be created will be a 2048-bit RSA key.
:type pem_path: ``twisted.python.filepath.FilePath``
:param pem_path: The certificate directory
to use, as with the endpoint. | src/txacme/endpoint.py | def load_or_create_client_key(pem_path):
"""
Load the client key from a directory, creating it if it does not exist.
.. note:: The client key that will be created will be a 2048-bit RSA key.
:type pem_path: ``twisted.python.filepath.FilePath``
:param pem_path: The certificate directory
to ... | def load_or_create_client_key(pem_path):
"""
Load the client key from a directory, creating it if it does not exist.
.. note:: The client key that will be created will be a 2048-bit RSA key.
:type pem_path: ``twisted.python.filepath.FilePath``
:param pem_path: The certificate directory
to ... | [
"Load",
"the",
"client",
"key",
"from",
"a",
"directory",
"creating",
"it",
"if",
"it",
"does",
"not",
"exist",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/endpoint.py#L131-L154 | [
"def",
"load_or_create_client_key",
"(",
"pem_path",
")",
":",
"acme_key_file",
"=",
"pem_path",
".",
"asTextMode",
"(",
")",
".",
"child",
"(",
"u'client.key'",
")",
"if",
"acme_key_file",
".",
"exists",
"(",
")",
":",
"key",
"=",
"serialization",
".",
"loa... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | _parse | Parse a txacme endpoint description.
:param reactor: The Twisted reactor.
:param directory: ``twisted.python.url.URL`` for the ACME directory to use
for issuing certs.
:param str pemdir: The path to the certificate directory to use. | src/txacme/endpoint.py | def _parse(reactor, directory, pemdir, *args, **kwargs):
"""
Parse a txacme endpoint description.
:param reactor: The Twisted reactor.
:param directory: ``twisted.python.url.URL`` for the ACME directory to use
for issuing certs.
:param str pemdir: The path to the certificate directory to us... | def _parse(reactor, directory, pemdir, *args, **kwargs):
"""
Parse a txacme endpoint description.
:param reactor: The Twisted reactor.
:param directory: ``twisted.python.url.URL`` for the ACME directory to use
for issuing certs.
:param str pemdir: The path to the certificate directory to us... | [
"Parse",
"a",
"txacme",
"endpoint",
"description",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/endpoint.py#L157-L177 | [
"def",
"_parse",
"(",
"reactor",
",",
"directory",
",",
"pemdir",
",",
"*",
"args",
",",
"*",
"*",
"kwargs",
")",
":",
"def",
"colon_join",
"(",
"items",
")",
":",
"return",
"':'",
".",
"join",
"(",
"[",
"item",
".",
"replace",
"(",
"':'",
",",
"... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | lazyread | Generator which continually reads ``f`` to the next instance
of ``delimiter``.
This allows you to do batch processing on the contents of ``f`` without
loading the entire file into memory.
:param f: Any file-like object which has a ``.read()`` method.
:param delimiter: Delimiter on which to split u... | lazyreader.py | def lazyread(f, delimiter):
"""
Generator which continually reads ``f`` to the next instance
of ``delimiter``.
This allows you to do batch processing on the contents of ``f`` without
loading the entire file into memory.
:param f: Any file-like object which has a ``.read()`` method.
:param ... | def lazyread(f, delimiter):
"""
Generator which continually reads ``f`` to the next instance
of ``delimiter``.
This allows you to do batch processing on the contents of ``f`` without
loading the entire file into memory.
:param f: Any file-like object which has a ``.read()`` method.
:param ... | [
"Generator",
"which",
"continually",
"reads",
"f",
"to",
"the",
"next",
"instance",
"of",
"delimiter",
"."
] | alexwlchan/lazyreader | python | https://github.com/alexwlchan/lazyreader/blob/918c408efba015efc1d67b05d1e4b373ac9d1192/lazyreader.py#L3-L44 | [
"def",
"lazyread",
"(",
"f",
",",
"delimiter",
")",
":",
"# Get an empty string to start with. We need to make sure that if the",
"# file is opened in binary mode, we're using byte strings, and similar",
"# for Unicode. Otherwise trying to update the running string will",
"# hit a TypeError.... | 918c408efba015efc1d67b05d1e4b373ac9d1192 |
train | generate_private_key | Generate a random private key using sensible parameters.
:param str key_type: The type of key to generate. One of: ``rsa``. | src/txacme/util.py | def generate_private_key(key_type):
"""
Generate a random private key using sensible parameters.
:param str key_type: The type of key to generate. One of: ``rsa``.
"""
if key_type == u'rsa':
return rsa.generate_private_key(
public_exponent=65537, key_size=2048, backend=default_b... | def generate_private_key(key_type):
"""
Generate a random private key using sensible parameters.
:param str key_type: The type of key to generate. One of: ``rsa``.
"""
if key_type == u'rsa':
return rsa.generate_private_key(
public_exponent=65537, key_size=2048, backend=default_b... | [
"Generate",
"a",
"random",
"private",
"key",
"using",
"sensible",
"parameters",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/util.py#L20-L29 | [
"def",
"generate_private_key",
"(",
"key_type",
")",
":",
"if",
"key_type",
"==",
"u'rsa'",
":",
"return",
"rsa",
".",
"generate_private_key",
"(",
"public_exponent",
"=",
"65537",
",",
"key_size",
"=",
"2048",
",",
"backend",
"=",
"default_backend",
"(",
")",... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | generate_tls_sni_01_cert | Generate a certificate/key pair for responding to a tls-sni-01 challenge.
:param str server_name: The SAN the certificate should have.
:param str key_type: The type of key to generate; usually not necessary.
:rtype: ``Tuple[`~cryptography.x509.Certificate`, PrivateKey]``
:return: A tuple of the certif... | src/txacme/util.py | def generate_tls_sni_01_cert(server_name, key_type=u'rsa',
_generate_private_key=None):
"""
Generate a certificate/key pair for responding to a tls-sni-01 challenge.
:param str server_name: The SAN the certificate should have.
:param str key_type: The type of key to generat... | def generate_tls_sni_01_cert(server_name, key_type=u'rsa',
_generate_private_key=None):
"""
Generate a certificate/key pair for responding to a tls-sni-01 challenge.
:param str server_name: The SAN the certificate should have.
:param str key_type: The type of key to generat... | [
"Generate",
"a",
"certificate",
"/",
"key",
"pair",
"for",
"responding",
"to",
"a",
"tls",
"-",
"sni",
"-",
"01",
"challenge",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/util.py#L32-L62 | [
"def",
"generate_tls_sni_01_cert",
"(",
"server_name",
",",
"key_type",
"=",
"u'rsa'",
",",
"_generate_private_key",
"=",
"None",
")",
":",
"key",
"=",
"(",
"_generate_private_key",
"or",
"generate_private_key",
")",
"(",
"key_type",
")",
"name",
"=",
"x509",
".... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | tap | "Tap" a Deferred callback chain with a function whose return value is
ignored. | src/txacme/util.py | def tap(f):
"""
"Tap" a Deferred callback chain with a function whose return value is
ignored.
"""
@wraps(f)
def _cb(res, *a, **kw):
d = maybeDeferred(f, res, *a, **kw)
d.addCallback(lambda ignored: res)
return d
return _cb | def tap(f):
"""
"Tap" a Deferred callback chain with a function whose return value is
ignored.
"""
@wraps(f)
def _cb(res, *a, **kw):
d = maybeDeferred(f, res, *a, **kw)
d.addCallback(lambda ignored: res)
return d
return _cb | [
"Tap",
"a",
"Deferred",
"callback",
"chain",
"with",
"a",
"function",
"whose",
"return",
"value",
"is",
"ignored",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/util.py#L65-L75 | [
"def",
"tap",
"(",
"f",
")",
":",
"@",
"wraps",
"(",
"f",
")",
"def",
"_cb",
"(",
"res",
",",
"*",
"a",
",",
"*",
"*",
"kw",
")",
":",
"d",
"=",
"maybeDeferred",
"(",
"f",
",",
"res",
",",
"*",
"a",
",",
"*",
"*",
"kw",
")",
"d",
".",
... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | decode_csr | Decode JOSE Base-64 DER-encoded CSR.
:param str b64der: The encoded CSR.
:rtype: `cryptography.x509.CertificateSigningRequest`
:return: The decoded CSR. | src/txacme/util.py | def decode_csr(b64der):
"""
Decode JOSE Base-64 DER-encoded CSR.
:param str b64der: The encoded CSR.
:rtype: `cryptography.x509.CertificateSigningRequest`
:return: The decoded CSR.
"""
try:
return x509.load_der_x509_csr(
decode_b64jose(b64der), default_backend())
ex... | def decode_csr(b64der):
"""
Decode JOSE Base-64 DER-encoded CSR.
:param str b64der: The encoded CSR.
:rtype: `cryptography.x509.CertificateSigningRequest`
:return: The decoded CSR.
"""
try:
return x509.load_der_x509_csr(
decode_b64jose(b64der), default_backend())
ex... | [
"Decode",
"JOSE",
"Base",
"-",
"64",
"DER",
"-",
"encoded",
"CSR",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/util.py#L89-L102 | [
"def",
"decode_csr",
"(",
"b64der",
")",
":",
"try",
":",
"return",
"x509",
".",
"load_der_x509_csr",
"(",
"decode_b64jose",
"(",
"b64der",
")",
",",
"default_backend",
"(",
")",
")",
"except",
"ValueError",
"as",
"error",
":",
"raise",
"DeserializationError",... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | csr_for_names | Generate a certificate signing request for the given names and private key.
.. seealso:: `acme.client.Client.request_issuance`
.. seealso:: `generate_private_key`
:param ``List[str]``: One or more names (subjectAltName) for which to
request a certificate.
:param key: A Cryptography private ... | src/txacme/util.py | def csr_for_names(names, key):
"""
Generate a certificate signing request for the given names and private key.
.. seealso:: `acme.client.Client.request_issuance`
.. seealso:: `generate_private_key`
:param ``List[str]``: One or more names (subjectAltName) for which to
request a certifica... | def csr_for_names(names, key):
"""
Generate a certificate signing request for the given names and private key.
.. seealso:: `acme.client.Client.request_issuance`
.. seealso:: `generate_private_key`
:param ``List[str]``: One or more names (subjectAltName) for which to
request a certifica... | [
"Generate",
"a",
"certificate",
"signing",
"request",
"for",
"the",
"given",
"names",
"and",
"private",
"key",
"."
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/src/txacme/util.py#L105-L133 | [
"def",
"csr_for_names",
"(",
"names",
",",
"key",
")",
":",
"if",
"len",
"(",
"names",
")",
"==",
"0",
":",
"raise",
"ValueError",
"(",
"'Must have at least one name'",
")",
"if",
"len",
"(",
"names",
"[",
"0",
"]",
")",
">",
"64",
":",
"common_name",
... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | Debug._wrap_parse | async wrapper is required to avoid await calls raising a SyntaxError | devtools/debug.py | def _wrap_parse(code, filename):
"""
async wrapper is required to avoid await calls raising a SyntaxError
"""
code = 'async def wrapper():\n' + indent(code, ' ')
return ast.parse(code, filename=filename).body[0].body[0].value | def _wrap_parse(code, filename):
"""
async wrapper is required to avoid await calls raising a SyntaxError
"""
code = 'async def wrapper():\n' + indent(code, ' ')
return ast.parse(code, filename=filename).body[0].body[0].value | [
"async",
"wrapper",
"is",
"required",
"to",
"avoid",
"await",
"calls",
"raising",
"a",
"SyntaxError"
] | samuelcolvin/python-devtools | python | https://github.com/samuelcolvin/python-devtools/blob/fb0021b3e6815348a28c1d2bf11b50b8f0bd511a/devtools/debug.py#L274-L279 | [
"def",
"_wrap_parse",
"(",
"code",
",",
"filename",
")",
":",
"code",
"=",
"'async def wrapper():\\n'",
"+",
"indent",
"(",
"code",
",",
"' '",
")",
"return",
"ast",
".",
"parse",
"(",
"code",
",",
"filename",
"=",
"filename",
")",
".",
"body",
"[",
"0... | fb0021b3e6815348a28c1d2bf11b50b8f0bd511a |
train | linkcode_resolve | Determine the URL corresponding to Python object | docs/conf.py | def linkcode_resolve(domain, info):
"""
Determine the URL corresponding to Python object
"""
if domain != 'py':
return None
modname = info['module']
fullname = info['fullname']
submod = sys.modules.get(modname)
if submod is None:
return None
obj = submod
for part ... | def linkcode_resolve(domain, info):
"""
Determine the URL corresponding to Python object
"""
if domain != 'py':
return None
modname = info['module']
fullname = info['fullname']
submod = sys.modules.get(modname)
if submod is None:
return None
obj = submod
for part ... | [
"Determine",
"the",
"URL",
"corresponding",
"to",
"Python",
"object"
] | twisted/txacme | python | https://github.com/twisted/txacme/blob/9478381cc63c6d53d14bf8db8407c923f472989a/docs/conf.py#L326-L359 | [
"def",
"linkcode_resolve",
"(",
"domain",
",",
"info",
")",
":",
"if",
"domain",
"!=",
"'py'",
":",
"return",
"None",
"modname",
"=",
"info",
"[",
"'module'",
"]",
"fullname",
"=",
"info",
"[",
"'fullname'",
"]",
"submod",
"=",
"sys",
".",
"modules",
"... | 9478381cc63c6d53d14bf8db8407c923f472989a |
train | SolrHypermap.layers_to_solr | Sync n layers in Solr. | hypermap/aggregator/solr.py | def layers_to_solr(self, layers):
"""
Sync n layers in Solr.
"""
layers_dict_list = []
layers_success_ids = []
layers_errors_ids = []
for layer in layers:
layer_dict, message = layer2dict(layer)
if not layer_dict:
layers_e... | def layers_to_solr(self, layers):
"""
Sync n layers in Solr.
"""
layers_dict_list = []
layers_success_ids = []
layers_errors_ids = []
for layer in layers:
layer_dict, message = layer2dict(layer)
if not layer_dict:
layers_e... | [
"Sync",
"n",
"layers",
"in",
"Solr",
"."
] | cga-harvard/Hypermap-Registry | python | https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/solr.py#L19-L50 | [
"def",
"layers_to_solr",
"(",
"self",
",",
"layers",
")",
":",
"layers_dict_list",
"=",
"[",
"]",
"layers_success_ids",
"=",
"[",
"]",
"layers_errors_ids",
"=",
"[",
"]",
"for",
"layer",
"in",
"layers",
":",
"layer_dict",
",",
"message",
"=",
"layer2dict",
... | 899a5385b15af7fba190ab4fae1d41e47d155a1b |
train | SolrHypermap.layer_to_solr | Sync a layer in Solr. | hypermap/aggregator/solr.py | def layer_to_solr(self, layer):
"""
Sync a layer in Solr.
"""
success = True
message = 'Synced layer id %s to Solr' % layer.id
layer_dict, message = layer2dict(layer)
if not layer_dict:
success = False
else:
layer_json = json.dumps... | def layer_to_solr(self, layer):
"""
Sync a layer in Solr.
"""
success = True
message = 'Synced layer id %s to Solr' % layer.id
layer_dict, message = layer2dict(layer)
if not layer_dict:
success = False
else:
layer_json = json.dumps... | [
"Sync",
"a",
"layer",
"in",
"Solr",
"."
] | cga-harvard/Hypermap-Registry | python | https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/solr.py#L52-L81 | [
"def",
"layer_to_solr",
"(",
"self",
",",
"layer",
")",
":",
"success",
"=",
"True",
"message",
"=",
"'Synced layer id %s to Solr'",
"%",
"layer",
".",
"id",
"layer_dict",
",",
"message",
"=",
"layer2dict",
"(",
"layer",
")",
"if",
"not",
"layer_dict",
":",
... | 899a5385b15af7fba190ab4fae1d41e47d155a1b |
train | SolrHypermap.clear_solr | Clear all indexes in the solr core | hypermap/aggregator/solr.py | def clear_solr(self, catalog="hypermap"):
"""Clear all indexes in the solr core"""
solr_url = "{0}/solr/{1}".format(SEARCH_URL, catalog)
solr = pysolr.Solr(solr_url, timeout=60)
solr.delete(q='*:*')
LOGGER.debug('Solr core cleared') | def clear_solr(self, catalog="hypermap"):
"""Clear all indexes in the solr core"""
solr_url = "{0}/solr/{1}".format(SEARCH_URL, catalog)
solr = pysolr.Solr(solr_url, timeout=60)
solr.delete(q='*:*')
LOGGER.debug('Solr core cleared') | [
"Clear",
"all",
"indexes",
"in",
"the",
"solr",
"core"
] | cga-harvard/Hypermap-Registry | python | https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/solr.py#L83-L88 | [
"def",
"clear_solr",
"(",
"self",
",",
"catalog",
"=",
"\"hypermap\"",
")",
":",
"solr_url",
"=",
"\"{0}/solr/{1}\"",
".",
"format",
"(",
"SEARCH_URL",
",",
"catalog",
")",
"solr",
"=",
"pysolr",
".",
"Solr",
"(",
"solr_url",
",",
"timeout",
"=",
"60",
"... | 899a5385b15af7fba190ab4fae1d41e47d155a1b |
train | SolrHypermap.update_schema | set the mapping in solr.
:param catalog: core
:return: | hypermap/aggregator/solr.py | def update_schema(self, catalog="hypermap"):
"""
set the mapping in solr.
:param catalog: core
:return:
"""
schema_url = "{0}/solr/{1}/schema".format(SEARCH_URL, catalog)
print schema_url
# create a special type to draw better heatmaps.
location_r... | def update_schema(self, catalog="hypermap"):
"""
set the mapping in solr.
:param catalog: core
:return:
"""
schema_url = "{0}/solr/{1}/schema".format(SEARCH_URL, catalog)
print schema_url
# create a special type to draw better heatmaps.
location_r... | [
"set",
"the",
"mapping",
"in",
"solr",
".",
":",
"param",
"catalog",
":",
"core",
":",
"return",
":"
] | cga-harvard/Hypermap-Registry | python | https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/solr.py#L99-L221 | [
"def",
"update_schema",
"(",
"self",
",",
"catalog",
"=",
"\"hypermap\"",
")",
":",
"schema_url",
"=",
"\"{0}/solr/{1}/schema\"",
".",
"format",
"(",
"SEARCH_URL",
",",
"catalog",
")",
"print",
"schema_url",
"# create a special type to draw better heatmaps.",
"location_... | 899a5385b15af7fba190ab4fae1d41e47d155a1b |
train | create_layer_from_metadata_xml | Create a layer / keyword list from a metadata record if it does not already exist. | hypermap/aggregator/utils.py | def create_layer_from_metadata_xml(resourcetype, xml, monitor=False, service=None, catalog=None):
"""
Create a layer / keyword list from a metadata record if it does not already exist.
"""
from models import gen_anytext, Layer
if resourcetype == 'http://www.opengis.net/cat/csw/2.0.2': # Dublin cor... | def create_layer_from_metadata_xml(resourcetype, xml, monitor=False, service=None, catalog=None):
"""
Create a layer / keyword list from a metadata record if it does not already exist.
"""
from models import gen_anytext, Layer
if resourcetype == 'http://www.opengis.net/cat/csw/2.0.2': # Dublin cor... | [
"Create",
"a",
"layer",
"/",
"keyword",
"list",
"from",
"a",
"metadata",
"record",
"if",
"it",
"does",
"not",
"already",
"exist",
"."
] | cga-harvard/Hypermap-Registry | python | https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/utils.py#L28-L59 | [
"def",
"create_layer_from_metadata_xml",
"(",
"resourcetype",
",",
"xml",
",",
"monitor",
"=",
"False",
",",
"service",
"=",
"None",
",",
"catalog",
"=",
"None",
")",
":",
"from",
"models",
"import",
"gen_anytext",
",",
"Layer",
"if",
"resourcetype",
"==",
"... | 899a5385b15af7fba190ab4fae1d41e47d155a1b |
train | create_service_from_endpoint | Create a service from an endpoint if it does not already exists. | hypermap/aggregator/utils.py | def create_service_from_endpoint(endpoint, service_type, title=None, abstract=None, catalog=None):
"""
Create a service from an endpoint if it does not already exists.
"""
from models import Service
if Service.objects.filter(url=endpoint, catalog=catalog).count() == 0:
# check if endpoint is... | def create_service_from_endpoint(endpoint, service_type, title=None, abstract=None, catalog=None):
"""
Create a service from an endpoint if it does not already exists.
"""
from models import Service
if Service.objects.filter(url=endpoint, catalog=catalog).count() == 0:
# check if endpoint is... | [
"Create",
"a",
"service",
"from",
"an",
"endpoint",
"if",
"it",
"does",
"not",
"already",
"exists",
"."
] | cga-harvard/Hypermap-Registry | python | https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/utils.py#L62-L82 | [
"def",
"create_service_from_endpoint",
"(",
"endpoint",
",",
"service_type",
",",
"title",
"=",
"None",
",",
"abstract",
"=",
"None",
",",
"catalog",
"=",
"None",
")",
":",
"from",
"models",
"import",
"Service",
"if",
"Service",
".",
"objects",
".",
"filter"... | 899a5385b15af7fba190ab4fae1d41e47d155a1b |
train | create_services_from_endpoint | Generate service/services from an endpoint.
WMS, WMTS, TMS endpoints correspond to a single service.
ESRI, CSW endpoints corrispond to many services.
:return: imported, message | hypermap/aggregator/utils.py | def create_services_from_endpoint(url, catalog, greedy_opt=True):
"""
Generate service/services from an endpoint.
WMS, WMTS, TMS endpoints correspond to a single service.
ESRI, CSW endpoints corrispond to many services.
:return: imported, message
"""
# this variable will collect any excepti... | def create_services_from_endpoint(url, catalog, greedy_opt=True):
"""
Generate service/services from an endpoint.
WMS, WMTS, TMS endpoints correspond to a single service.
ESRI, CSW endpoints corrispond to many services.
:return: imported, message
"""
# this variable will collect any excepti... | [
"Generate",
"service",
"/",
"services",
"from",
"an",
"endpoint",
".",
"WMS",
"WMTS",
"TMS",
"endpoints",
"correspond",
"to",
"a",
"single",
"service",
".",
"ESRI",
"CSW",
"endpoints",
"corrispond",
"to",
"many",
"services",
".",
":",
"return",
":",
"importe... | cga-harvard/Hypermap-Registry | python | https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/utils.py#L85-L332 | [
"def",
"create_services_from_endpoint",
"(",
"url",
",",
"catalog",
",",
"greedy_opt",
"=",
"True",
")",
":",
"# this variable will collect any exception message during the routine.",
"# will be used in the last step to send a message if \"detected\" var is False.",
"messages",
"=",
... | 899a5385b15af7fba190ab4fae1d41e47d155a1b |
train | service_url_parse | Function that parses from url the service and folder of services. | hypermap/aggregator/utils.py | def service_url_parse(url):
"""
Function that parses from url the service and folder of services.
"""
endpoint = get_sanitized_endpoint(url)
url_split_list = url.split(endpoint + '/')
if len(url_split_list) != 0:
url_split_list = url_split_list[1].split('/')
else:
raise Excep... | def service_url_parse(url):
"""
Function that parses from url the service and folder of services.
"""
endpoint = get_sanitized_endpoint(url)
url_split_list = url.split(endpoint + '/')
if len(url_split_list) != 0:
url_split_list = url_split_list[1].split('/')
else:
raise Excep... | [
"Function",
"that",
"parses",
"from",
"url",
"the",
"service",
"and",
"folder",
"of",
"services",
"."
] | cga-harvard/Hypermap-Registry | python | https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/utils.py#L335-L349 | [
"def",
"service_url_parse",
"(",
"url",
")",
":",
"endpoint",
"=",
"get_sanitized_endpoint",
"(",
"url",
")",
"url_split_list",
"=",
"url",
".",
"split",
"(",
"endpoint",
"+",
"'/'",
")",
"if",
"len",
"(",
"url_split_list",
")",
"!=",
"0",
":",
"url_split_... | 899a5385b15af7fba190ab4fae1d41e47d155a1b |
train | inverse_mercator | Given coordinates in spherical mercator, return a lon,lat tuple. | hypermap/aggregator/utils.py | def inverse_mercator(xy):
"""
Given coordinates in spherical mercator, return a lon,lat tuple.
"""
lon = (xy[0] / 20037508.34) * 180
lat = (xy[1] / 20037508.34) * 180
lat = 180 / math.pi * \
(2 * math.atan(math.exp(lat * math.pi / 180)) - math.pi / 2)
return (lon, lat) | def inverse_mercator(xy):
"""
Given coordinates in spherical mercator, return a lon,lat tuple.
"""
lon = (xy[0] / 20037508.34) * 180
lat = (xy[1] / 20037508.34) * 180
lat = 180 / math.pi * \
(2 * math.atan(math.exp(lat * math.pi / 180)) - math.pi / 2)
return (lon, lat) | [
"Given",
"coordinates",
"in",
"spherical",
"mercator",
"return",
"a",
"lon",
"lat",
"tuple",
"."
] | cga-harvard/Hypermap-Registry | python | https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/utils.py#L404-L412 | [
"def",
"inverse_mercator",
"(",
"xy",
")",
":",
"lon",
"=",
"(",
"xy",
"[",
"0",
"]",
"/",
"20037508.34",
")",
"*",
"180",
"lat",
"=",
"(",
"xy",
"[",
"1",
"]",
"/",
"20037508.34",
")",
"*",
"180",
"lat",
"=",
"180",
"/",
"math",
".",
"pi",
"... | 899a5385b15af7fba190ab4fae1d41e47d155a1b |
train | get_wms_version_negotiate | OWSLib wrapper function to perform version negotiation against owslib.wms.WebMapService | hypermap/aggregator/utils.py | def get_wms_version_negotiate(url, timeout=10):
"""
OWSLib wrapper function to perform version negotiation against owslib.wms.WebMapService
"""
try:
LOGGER.debug('Trying a WMS 1.3.0 GetCapabilities request')
return WebMapService(url, version='1.3.0', timeout=timeout)
except Exceptio... | def get_wms_version_negotiate(url, timeout=10):
"""
OWSLib wrapper function to perform version negotiation against owslib.wms.WebMapService
"""
try:
LOGGER.debug('Trying a WMS 1.3.0 GetCapabilities request')
return WebMapService(url, version='1.3.0', timeout=timeout)
except Exceptio... | [
"OWSLib",
"wrapper",
"function",
"to",
"perform",
"version",
"negotiation",
"against",
"owslib",
".",
"wms",
".",
"WebMapService"
] | cga-harvard/Hypermap-Registry | python | https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/utils.py#L415-L426 | [
"def",
"get_wms_version_negotiate",
"(",
"url",
",",
"timeout",
"=",
"10",
")",
":",
"try",
":",
"LOGGER",
".",
"debug",
"(",
"'Trying a WMS 1.3.0 GetCapabilities request'",
")",
"return",
"WebMapService",
"(",
"url",
",",
"version",
"=",
"'1.3.0'",
",",
"timeou... | 899a5385b15af7fba190ab4fae1d41e47d155a1b |
train | get_sanitized_endpoint | Sanitize an endpoint, as removing unneeded parameters | hypermap/aggregator/utils.py | def get_sanitized_endpoint(url):
"""
Sanitize an endpoint, as removing unneeded parameters
"""
# sanitize esri
sanitized_url = url.rstrip()
esri_string = '/rest/services'
if esri_string in url:
match = re.search(esri_string, sanitized_url)
sanitized_url = url[0:(match.start(0... | def get_sanitized_endpoint(url):
"""
Sanitize an endpoint, as removing unneeded parameters
"""
# sanitize esri
sanitized_url = url.rstrip()
esri_string = '/rest/services'
if esri_string in url:
match = re.search(esri_string, sanitized_url)
sanitized_url = url[0:(match.start(0... | [
"Sanitize",
"an",
"endpoint",
"as",
"removing",
"unneeded",
"parameters"
] | cga-harvard/Hypermap-Registry | python | https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/utils.py#L435-L445 | [
"def",
"get_sanitized_endpoint",
"(",
"url",
")",
":",
"# sanitize esri",
"sanitized_url",
"=",
"url",
".",
"rstrip",
"(",
")",
"esri_string",
"=",
"'/rest/services'",
"if",
"esri_string",
"in",
"url",
":",
"match",
"=",
"re",
".",
"search",
"(",
"esri_string"... | 899a5385b15af7fba190ab4fae1d41e47d155a1b |
train | get_esri_service_name | A method to get a service name from an esri endpoint.
For example: http://example.com/arcgis/rest/services/myservice/mylayer/MapServer/?f=json
Will return: myservice/mylayer | hypermap/aggregator/utils.py | def get_esri_service_name(url):
"""
A method to get a service name from an esri endpoint.
For example: http://example.com/arcgis/rest/services/myservice/mylayer/MapServer/?f=json
Will return: myservice/mylayer
"""
result = re.search('rest/services/(.*)/[MapServer|ImageServer]', url)
if resul... | def get_esri_service_name(url):
"""
A method to get a service name from an esri endpoint.
For example: http://example.com/arcgis/rest/services/myservice/mylayer/MapServer/?f=json
Will return: myservice/mylayer
"""
result = re.search('rest/services/(.*)/[MapServer|ImageServer]', url)
if resul... | [
"A",
"method",
"to",
"get",
"a",
"service",
"name",
"from",
"an",
"esri",
"endpoint",
".",
"For",
"example",
":",
"http",
":",
"//",
"example",
".",
"com",
"/",
"arcgis",
"/",
"rest",
"/",
"services",
"/",
"myservice",
"/",
"mylayer",
"/",
"MapServer",... | cga-harvard/Hypermap-Registry | python | https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/utils.py#L448-L458 | [
"def",
"get_esri_service_name",
"(",
"url",
")",
":",
"result",
"=",
"re",
".",
"search",
"(",
"'rest/services/(.*)/[MapServer|ImageServer]'",
",",
"url",
")",
"if",
"result",
"is",
"None",
":",
"return",
"url",
"else",
":",
"return",
"result",
".",
"group",
... | 899a5385b15af7fba190ab4fae1d41e47d155a1b |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.