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train
get_esri_extent
Get the extent of an ESRI resource
hypermap/aggregator/utils.py
def get_esri_extent(esriobj): """ Get the extent of an ESRI resource """ extent = None srs = None if 'fullExtent' in esriobj._json_struct: extent = esriobj._json_struct['fullExtent'] if 'extent' in esriobj._json_struct: extent = esriobj._json_struct['extent'] try: ...
def get_esri_extent(esriobj): """ Get the extent of an ESRI resource """ extent = None srs = None if 'fullExtent' in esriobj._json_struct: extent = esriobj._json_struct['fullExtent'] if 'extent' in esriobj._json_struct: extent = esriobj._json_struct['extent'] try: ...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/utils.py#L461-L479
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
bbox2wktpolygon
Return OGC WKT Polygon of a simple bbox list of strings
hypermap/aggregator/utils.py
def bbox2wktpolygon(bbox): """ Return OGC WKT Polygon of a simple bbox list of strings """ minx = float(bbox[0]) miny = float(bbox[1]) maxx = float(bbox[2]) maxy = float(bbox[3]) return 'POLYGON((%.2f %.2f, %.2f %.2f, %.2f %.2f, %.2f %.2f, %.2f %.2f))' \ % (minx, miny, minx, max...
def bbox2wktpolygon(bbox): """ Return OGC WKT Polygon of a simple bbox list of strings """ minx = float(bbox[0]) miny = float(bbox[1]) maxx = float(bbox[2]) maxy = float(bbox[3]) return 'POLYGON((%.2f %.2f, %.2f %.2f, %.2f %.2f, %.2f %.2f, %.2f %.2f))' \ % (minx, miny, minx, max...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/utils.py#L503-L513
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
get_solr_date
Returns a date in a valid Solr format from a string.
hypermap/aggregator/utils.py
def get_solr_date(pydate, is_negative): """ Returns a date in a valid Solr format from a string. """ # check if date is valid and then set it to solr format YYYY-MM-DDThh:mm:ssZ try: if isinstance(pydate, datetime.datetime): solr_date = '%sZ' % pydate.isoformat()[0:19] ...
def get_solr_date(pydate, is_negative): """ Returns a date in a valid Solr format from a string. """ # check if date is valid and then set it to solr format YYYY-MM-DDThh:mm:ssZ try: if isinstance(pydate, datetime.datetime): solr_date = '%sZ' % pydate.isoformat()[0:19] ...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/utils.py#L516-L532
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
get_date
Returns a custom date representation. A date can be detected or from metadata. It can be a range or a simple date in isoformat.
hypermap/aggregator/utils.py
def get_date(layer): """ Returns a custom date representation. A date can be detected or from metadata. It can be a range or a simple date in isoformat. """ date = None sign = '+' date_type = 1 layer_dates = layer.get_layer_dates() # we index the first date! if layer_dates: ...
def get_date(layer): """ Returns a custom date representation. A date can be detected or from metadata. It can be a range or a simple date in isoformat. """ date = None sign = '+' date_type = 1 layer_dates = layer.get_layer_dates() # we index the first date! if layer_dates: ...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/utils.py#L535-L559
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
layer2dict
Return a json representation for a layer.
hypermap/aggregator/utils.py
def layer2dict(layer): """ Return a json representation for a layer. """ category = None username = None # bbox must be valid before proceeding if not layer.has_valid_bbox(): message = 'Layer id: %s has a not valid bbox' % layer.id return None, message # we can proceed...
def layer2dict(layer): """ Return a json representation for a layer. """ category = None username = None # bbox must be valid before proceeding if not layer.has_valid_bbox(): message = 'Layer id: %s has a not valid bbox' % layer.id return None, message # we can proceed...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/utils.py#L570-L661
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
detect_metadata_url_scheme
detect whether a url is a Service type that HHypermap supports
hypermap/aggregator/utils.py
def detect_metadata_url_scheme(url): """detect whether a url is a Service type that HHypermap supports""" scheme = None url_lower = url.lower() if any(x in url_lower for x in ['wms', 'service=wms']): scheme = 'OGC:WMS' if any(x in url_lower for x in ['wmts', 'service=wmts']): schem...
def detect_metadata_url_scheme(url): """detect whether a url is a Service type that HHypermap supports""" scheme = None url_lower = url.lower() if any(x in url_lower for x in ['wms', 'service=wms']): scheme = 'OGC:WMS' if any(x in url_lower for x in ['wmts', 'service=wmts']): schem...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/utils.py#L664-L679
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
serialize_checks
Serialize a check_set for raphael
hypermap/aggregator/views.py
def serialize_checks(check_set): """ Serialize a check_set for raphael """ check_set_list = [] for check in check_set.all()[:25]: check_set_list.append( { 'datetime': check.checked_datetime.isoformat(), 'value': check.response_time, ...
def serialize_checks(check_set): """ Serialize a check_set for raphael """ check_set_list = [] for check in check_set.all()[:25]: check_set_list.append( { 'datetime': check.checked_datetime.isoformat(), 'value': check.response_time, ...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/views.py#L45-L58
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
domains
A page with number of services and layers faceted on domains.
hypermap/aggregator/views.py
def domains(request): """ A page with number of services and layers faceted on domains. """ url = '' query = '*:*&facet=true&facet.limit=-1&facet.pivot=domain_name,service_id&wt=json&indent=true&rows=0' if settings.SEARCH_TYPE == 'elasticsearch': url = '%s/select?q=%s' % (settings.SEARCH...
def domains(request): """ A page with number of services and layers faceted on domains. """ url = '' query = '*:*&facet=true&facet.limit=-1&facet.pivot=domain_name,service_id&wt=json&indent=true&rows=0' if settings.SEARCH_TYPE == 'elasticsearch': url = '%s/select?q=%s' % (settings.SEARCH...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/views.py#L62-L84
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
tasks_runner
A page that let the admin to run global tasks.
hypermap/aggregator/views.py
def tasks_runner(request): """ A page that let the admin to run global tasks. """ # server info cached_layers_number = 0 cached_layers = cache.get('layers') if cached_layers: cached_layers_number = len(cached_layers) cached_deleted_layers_number = 0 cached_deleted_layers = ...
def tasks_runner(request): """ A page that let the admin to run global tasks. """ # server info cached_layers_number = 0 cached_layers = cache.get('layers') if cached_layers: cached_layers_number = len(cached_layers) cached_deleted_layers_number = 0 cached_deleted_layers = ...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/views.py#L254-L307
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
layer_mapproxy
Get Layer with matching catalog and uuid
hypermap/aggregator/views.py
def layer_mapproxy(request, catalog_slug, layer_uuid, path_info): """ Get Layer with matching catalog and uuid """ layer = get_object_or_404(Layer, uuid=layer_uuid, catalog__slug=catalog_slug) # for WorldMap layers we need to use the url o...
def layer_mapproxy(request, catalog_slug, layer_uuid, path_info): """ Get Layer with matching catalog and uuid """ layer = get_object_or_404(Layer, uuid=layer_uuid, catalog__slug=catalog_slug) # for WorldMap layers we need to use the url o...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/views.py#L310-L350
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
parse_datetime
Parses a date string to date object. for BCE dates, only supports the year part.
hypermap/search_api/utils.py
def parse_datetime(date_str): """ Parses a date string to date object. for BCE dates, only supports the year part. """ is_common_era = True date_str_parts = date_str.split("-") if date_str_parts and date_str_parts[0] == '': is_common_era = False # for now, only support BCE ye...
def parse_datetime(date_str): """ Parses a date string to date object. for BCE dates, only supports the year part. """ is_common_era = True date_str_parts = date_str.split("-") if date_str_parts and date_str_parts[0] == '': is_common_era = False # for now, only support BCE ye...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search_api/utils.py#L24-L57
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
parse_solr_time_range_as_pair
:param time_filter: [2013-03-01 TO 2013-05-01T00:00:00] :return: (2013-03-01, 2013-05-01T00:00:00)
hypermap/search_api/utils.py
def parse_solr_time_range_as_pair(time_filter): """ :param time_filter: [2013-03-01 TO 2013-05-01T00:00:00] :return: (2013-03-01, 2013-05-01T00:00:00) """ pattern = "\\[(.*) TO (.*)\\]" matcher = re.search(pattern, time_filter) if matcher: return matcher.group(1), matcher.group(2) ...
def parse_solr_time_range_as_pair(time_filter): """ :param time_filter: [2013-03-01 TO 2013-05-01T00:00:00] :return: (2013-03-01, 2013-05-01T00:00:00) """ pattern = "\\[(.*) TO (.*)\\]" matcher = re.search(pattern, time_filter) if matcher: return matcher.group(1), matcher.group(2) ...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search_api/utils.py#L60-L70
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
parse_datetime_range
Parse the url param to python objects. From what time range to divide by a.time.gap into intervals. Defaults to q.time and otherwise 90 days. Validate in API: re.search("\\[(.*) TO (.*)\\]", value) :param time_filter: [2013-03-01 TO 2013-05-01T00:00:00] :return: datetime.datetime(2013, 3, 1, 0, 0), ...
hypermap/search_api/utils.py
def parse_datetime_range(time_filter): """ Parse the url param to python objects. From what time range to divide by a.time.gap into intervals. Defaults to q.time and otherwise 90 days. Validate in API: re.search("\\[(.*) TO (.*)\\]", value) :param time_filter: [2013-03-01 TO 2013-05-01T00:00:00]...
def parse_datetime_range(time_filter): """ Parse the url param to python objects. From what time range to divide by a.time.gap into intervals. Defaults to q.time and otherwise 90 days. Validate in API: re.search("\\[(.*) TO (.*)\\]", value) :param time_filter: [2013-03-01 TO 2013-05-01T00:00:00]...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search_api/utils.py#L73-L88
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
parse_ISO8601
P1D to (1, ("DAYS", isodate.Duration(days=1)). P1Y to (1, ("YEARS", isodate.Duration(years=1)). :param time_gap: ISO8601 string. :return: tuple with quantity and unit of time.
hypermap/search_api/utils.py
def parse_ISO8601(time_gap): """ P1D to (1, ("DAYS", isodate.Duration(days=1)). P1Y to (1, ("YEARS", isodate.Duration(years=1)). :param time_gap: ISO8601 string. :return: tuple with quantity and unit of time. """ matcher = None if time_gap.count("T"): units = { "H": ...
def parse_ISO8601(time_gap): """ P1D to (1, ("DAYS", isodate.Duration(days=1)). P1Y to (1, ("YEARS", isodate.Duration(years=1)). :param time_gap: ISO8601 string. :return: tuple with quantity and unit of time. """ matcher = None if time_gap.count("T"): units = { "H": ...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search_api/utils.py#L109-L145
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
compute_gap
Compute a gap that seems reasonable, considering natural time units and limit. # TODO: make it to be reasonable. # TODO: make it to be small unit of time sensitive. :param start: datetime :param end: datetime :param time_limit: gaps count :return: solr's format duration.
hypermap/search_api/utils.py
def compute_gap(start, end, time_limit): """ Compute a gap that seems reasonable, considering natural time units and limit. # TODO: make it to be reasonable. # TODO: make it to be small unit of time sensitive. :param start: datetime :param end: datetime :param time_limit: gaps count :ret...
def compute_gap(start, end, time_limit): """ Compute a gap that seems reasonable, considering natural time units and limit. # TODO: make it to be reasonable. # TODO: make it to be small unit of time sensitive. :param start: datetime :param end: datetime :param time_limit: gaps count :ret...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search_api/utils.py#L148-L166
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
gap_to_sorl
P1D to +1DAY :param time_gap: :return: solr's format duration.
hypermap/search_api/utils.py
def gap_to_sorl(time_gap): """ P1D to +1DAY :param time_gap: :return: solr's format duration. """ quantity, unit = parse_ISO8601(time_gap) if unit[0] == "WEEKS": return "+{0}DAYS".format(quantity * 7) else: return "+{0}{1}".format(quantity, unit[0])
def gap_to_sorl(time_gap): """ P1D to +1DAY :param time_gap: :return: solr's format duration. """ quantity, unit = parse_ISO8601(time_gap) if unit[0] == "WEEKS": return "+{0}DAYS".format(quantity * 7) else: return "+{0}{1}".format(quantity, unit[0])
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search_api/utils.py#L185-L195
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
request_time_facet
time facet query builder :param field: map the query to this field. :param time_limit: Non-0 triggers time/date range faceting. This value is the maximum number of time ranges to return when a.time.gap is unspecified. This is a soft maximum; less will usually be returned. A suggested value is 100. N...
hypermap/search_api/utils.py
def request_time_facet(field, time_filter, time_gap, time_limit=100): """ time facet query builder :param field: map the query to this field. :param time_limit: Non-0 triggers time/date range faceting. This value is the maximum number of time ranges to return when a.time.gap is unspecified. This is ...
def request_time_facet(field, time_filter, time_gap, time_limit=100): """ time facet query builder :param field: map the query to this field. :param time_limit: Non-0 triggers time/date range faceting. This value is the maximum number of time ranges to return when a.time.gap is unspecified. This is ...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search_api/utils.py#L198-L244
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
parse_solr_geo_range_as_pair
:param geo_box_str: [-90,-180 TO 90,180] :return: ("-90,-180", "90,180")
hypermap/search_api/utils.py
def parse_solr_geo_range_as_pair(geo_box_str): """ :param geo_box_str: [-90,-180 TO 90,180] :return: ("-90,-180", "90,180") """ pattern = "\\[(.*) TO (.*)\\]" matcher = re.search(pattern, geo_box_str) if matcher: return matcher.group(1), matcher.group(2) else: raise Excep...
def parse_solr_geo_range_as_pair(geo_box_str): """ :param geo_box_str: [-90,-180 TO 90,180] :return: ("-90,-180", "90,180") """ pattern = "\\[(.*) TO (.*)\\]" matcher = re.search(pattern, geo_box_str) if matcher: return matcher.group(1), matcher.group(2) else: raise Excep...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search_api/utils.py#L247-L257
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
parse_geo_box
parses [-90,-180 TO 90,180] to a shapely.geometry.box :param geo_box_str: :return:
hypermap/search_api/utils.py
def parse_geo_box(geo_box_str): """ parses [-90,-180 TO 90,180] to a shapely.geometry.box :param geo_box_str: :return: """ from_point_str, to_point_str = parse_solr_geo_range_as_pair(geo_box_str) from_point = parse_lat_lon(from_point_str) to_point = parse_lat_lon(to_point_str) recta...
def parse_geo_box(geo_box_str): """ parses [-90,-180 TO 90,180] to a shapely.geometry.box :param geo_box_str: :return: """ from_point_str, to_point_str = parse_solr_geo_range_as_pair(geo_box_str) from_point = parse_lat_lon(from_point_str) to_point = parse_lat_lon(to_point_str) recta...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search_api/utils.py#L265-L276
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
request_heatmap_facet
heatmap facet query builder :param field: map the query to this field. :param hm_filter: From what region to plot the heatmap. Defaults to q.geo or otherwise the world. :param hm_grid_level: To explicitly specify the grid level, e.g. to let a user ask for greater or courser resolution than the most rece...
hypermap/search_api/utils.py
def request_heatmap_facet(field, hm_filter, hm_grid_level, hm_limit): """ heatmap facet query builder :param field: map the query to this field. :param hm_filter: From what region to plot the heatmap. Defaults to q.geo or otherwise the world. :param hm_grid_level: To explicitly specify the grid leve...
def request_heatmap_facet(field, hm_filter, hm_grid_level, hm_limit): """ heatmap facet query builder :param field: map the query to this field. :param hm_filter: From what region to plot the heatmap. Defaults to q.geo or otherwise the world. :param hm_grid_level: To explicitly specify the grid leve...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search_api/utils.py#L279-L315
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
asterisk_to_min_max
traduce [* TO *] to something like [MIN-INDEXED-DATE TO MAX-INDEXED-DATE] :param field: map the stats to this field. :param time_filter: this is the value to be translated. think in "[* TO 2000]" :param search_engine_endpoint: solr core :param actual_params: (not implemented) to merge with other params....
hypermap/search_api/utils.py
def asterisk_to_min_max(field, time_filter, search_engine_endpoint, actual_params=None): """ traduce [* TO *] to something like [MIN-INDEXED-DATE TO MAX-INDEXED-DATE] :param field: map the stats to this field. :param time_filter: this is the value to be translated. think in "[* TO 2000]" :param sear...
def asterisk_to_min_max(field, time_filter, search_engine_endpoint, actual_params=None): """ traduce [* TO *] to something like [MIN-INDEXED-DATE TO MAX-INDEXED-DATE] :param field: map the stats to this field. :param time_filter: this is the value to be translated. think in "[* TO 2000]" :param sear...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search_api/utils.py#L322-L359
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
get_service
Set a service object based on the XML metadata <dct:references scheme="OGC:WMS">http://ngamaps.geointapps.org/arcgis /services/RIO/Rio_Foundation_Transportation/MapServer/WMSServer </dct:references> :param instance: :return: Layer
hypermap/search/pycsw_plugin.py
def get_service(raw_xml): """ Set a service object based on the XML metadata <dct:references scheme="OGC:WMS">http://ngamaps.geointapps.org/arcgis /services/RIO/Rio_Foundation_Transportation/MapServer/WMSServer </dct:references> :param instance: :return: Layer """ from pycsw...
def get_service(raw_xml): """ Set a service object based on the XML metadata <dct:references scheme="OGC:WMS">http://ngamaps.geointapps.org/arcgis /services/RIO/Rio_Foundation_Transportation/MapServer/WMSServer </dct:references> :param instance: :return: Layer """ from pycsw...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search/pycsw_plugin.py#L56-L95
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
HHypermapRepository.query_ids
Query by list of identifiers
hypermap/search/pycsw_plugin.py
def query_ids(self, ids): """ Query by list of identifiers """ results = self._get_repo_filter(Layer.objects).filter(uuid__in=ids).all() if len(results) == 0: # try services results = self._get_repo_filter(Service.objects).filter(uuid__in=ids).all() return...
def query_ids(self, ids): """ Query by list of identifiers """ results = self._get_repo_filter(Layer.objects).filter(uuid__in=ids).all() if len(results) == 0: # try services results = self._get_repo_filter(Service.objects).filter(uuid__in=ids).all() return...
[ "Query", "by", "list", "of", "identifiers" ]
cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search/pycsw_plugin.py#L152-L162
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
HHypermapRepository.query_domain
Query by property domain values
hypermap/search/pycsw_plugin.py
def query_domain(self, domain, typenames, domainquerytype='list', count=False): """ Query by property domain values """ objects = self._get_repo_filter(Layer.objects) if domainquerytype == 'range': return [tuple(objects.aggregate(Min(domain), Max(domain)).values())]...
def query_domain(self, domain, typenames, domainquerytype='list', count=False): """ Query by property domain values """ objects = self._get_repo_filter(Layer.objects) if domainquerytype == 'range': return [tuple(objects.aggregate(Min(domain), Max(domain)).values())]...
[ "Query", "by", "property", "domain", "values" ]
cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search/pycsw_plugin.py#L164-L178
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
HHypermapRepository.query_insert
Query to get latest (default) or earliest update to repository
hypermap/search/pycsw_plugin.py
def query_insert(self, direction='max'): """ Query to get latest (default) or earliest update to repository """ if direction == 'min': return Layer.objects.aggregate( Min('last_updated'))['last_updated__min'].strftime('%Y-%m-%dT%H:%M:%SZ') return self....
def query_insert(self, direction='max'): """ Query to get latest (default) or earliest update to repository """ if direction == 'min': return Layer.objects.aggregate( Min('last_updated'))['last_updated__min'].strftime('%Y-%m-%dT%H:%M:%SZ') return self....
[ "Query", "to", "get", "latest", "(", "default", ")", "or", "earliest", "update", "to", "repository" ]
cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search/pycsw_plugin.py#L180-L188
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
HHypermapRepository.query_source
Query by source
hypermap/search/pycsw_plugin.py
def query_source(self, source): """ Query by source """ return self._get_repo_filter(Layer.objects).filter(url=source)
def query_source(self, source): """ Query by source """ return self._get_repo_filter(Layer.objects).filter(url=source)
[ "Query", "by", "source" ]
cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search/pycsw_plugin.py#L190-L194
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
HHypermapRepository.query
Query records from underlying repository
hypermap/search/pycsw_plugin.py
def query(self, constraint, sortby=None, typenames=None, maxrecords=10, startposition=0): """ Query records from underlying repository """ # run the raw query and get total # we want to exclude layers which are not valid, as it is done in the search engine if 'where' in ...
def query(self, constraint, sortby=None, typenames=None, maxrecords=10, startposition=0): """ Query records from underlying repository """ # run the raw query and get total # we want to exclude layers which are not valid, as it is done in the search engine if 'where' in ...
[ "Query", "records", "from", "underlying", "repository" ]
cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search/pycsw_plugin.py#L196-L231
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
HHypermapRepository.insert
Insert a record into the repository
hypermap/search/pycsw_plugin.py
def insert(self, resourcetype, source, insert_date=None): """ Insert a record into the repository """ caller = inspect.stack()[1][3] if caller == 'transaction': # insert of Layer hhclass = 'Layer' source = resourcetype resourcetype = resourc...
def insert(self, resourcetype, source, insert_date=None): """ Insert a record into the repository """ caller = inspect.stack()[1][3] if caller == 'transaction': # insert of Layer hhclass = 'Layer' source = resourcetype resourcetype = resourc...
[ "Insert", "a", "record", "into", "the", "repository" ]
cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search/pycsw_plugin.py#L233-L249
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
HHypermapRepository._insert_or_update
Insert or update a record in the repository
hypermap/search/pycsw_plugin.py
def _insert_or_update(self, resourcetype, source, mode='insert', hhclass='Service'): """ Insert or update a record in the repository """ keywords = [] if self.filter is not None: catalog = Catalog.objects.get(id=int(self.filter.split()[-1])) try: ...
def _insert_or_update(self, resourcetype, source, mode='insert', hhclass='Service'): """ Insert or update a record in the repository """ keywords = [] if self.filter is not None: catalog = Catalog.objects.get(id=int(self.filter.split()[-1])) try: ...
[ "Insert", "or", "update", "a", "record", "in", "the", "repository" ]
cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search/pycsw_plugin.py#L251-L321
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
HHypermapRepository.delete
Delete a record from the repository
hypermap/search/pycsw_plugin.py
def delete(self, constraint): """ Delete a record from the repository """ results = self._get_repo_filter(Service.objects).extra(where=[constraint['where']], params=constraint['values']).all() deleted = len(results) ...
def delete(self, constraint): """ Delete a record from the repository """ results = self._get_repo_filter(Service.objects).extra(where=[constraint['where']], params=constraint['values']).all() deleted = len(results) ...
[ "Delete", "a", "record", "from", "the", "repository" ]
cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search/pycsw_plugin.py#L323-L332
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
HHypermapRepository._get_repo_filter
Apply repository wide side filter / mask query
hypermap/search/pycsw_plugin.py
def _get_repo_filter(self, query): """ Apply repository wide side filter / mask query """ if self.filter is not None: return query.extra(where=[self.filter]) return query
def _get_repo_filter(self, query): """ Apply repository wide side filter / mask query """ if self.filter is not None: return query.extra(where=[self.filter]) return query
[ "Apply", "repository", "wide", "side", "filter", "/", "mask", "query" ]
cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search/pycsw_plugin.py#L334-L340
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
to_meshcode
緯度経度から指定次の地域メッシュコードを算出する。 Args: lat: 世界測地系の緯度(度単位) lon: 世界測地系の経度(度単位) level: 地域メッシュコードの次数 1次(80km四方):1 40倍(40km四方):40000 20倍(20km四方):20000 16倍(16km四方):16000 2次(10km四方):2 8倍(8km四方):8000 ...
jismesh/utils.py
def to_meshcode(lat, lon, level): """緯度経度から指定次の地域メッシュコードを算出する。 Args: lat: 世界測地系の緯度(度単位) lon: 世界測地系の経度(度単位) level: 地域メッシュコードの次数 1次(80km四方):1 40倍(40km四方):40000 20倍(20km四方):20000 16倍(16km四方):16000 2次(10km四方):2 ...
def to_meshcode(lat, lon, level): """緯度経度から指定次の地域メッシュコードを算出する。 Args: lat: 世界測地系の緯度(度単位) lon: 世界測地系の経度(度単位) level: 地域メッシュコードの次数 1次(80km四方):1 40倍(40km四方):40000 20倍(20km四方):20000 16倍(16km四方):16000 2次(10km四方):2 ...
[ "緯度経度から指定次の地域メッシュコードを算出する。" ]
hni14/jismesh
python
https://github.com/hni14/jismesh/blob/bda486ac7828d0adaea2a128154d0a554be7ef37/jismesh/utils.py#L64-L238
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bda486ac7828d0adaea2a128154d0a554be7ef37
train
to_meshlevel
メッシュコードから次数を算出する。 Args: meshcode: メッシュコード Return: 地域メッシュコードの次数 1次(80km四方):1 40倍(40km四方):40000 20倍(20km四方):20000 16倍(16km四方):16000 2次(10km四方):2 8倍(8km四方):8000 5倍(5km四方):5000 ...
jismesh/utils.py
def to_meshlevel(meshcode): """メッシュコードから次数を算出する。 Args: meshcode: メッシュコード Return: 地域メッシュコードの次数 1次(80km四方):1 40倍(40km四方):40000 20倍(20km四方):20000 16倍(16km四方):16000 2次(10km四方):2 8倍(8km四方):8000 ...
def to_meshlevel(meshcode): """メッシュコードから次数を算出する。 Args: meshcode: メッシュコード Return: 地域メッシュコードの次数 1次(80km四方):1 40倍(40km四方):40000 20倍(20km四方):20000 16倍(16km四方):16000 2次(10km四方):2 8倍(8km四方):8000 ...
[ "メッシュコードから次数を算出する。" ]
hni14/jismesh
python
https://github.com/hni14/jismesh/blob/bda486ac7828d0adaea2a128154d0a554be7ef37/jismesh/utils.py#L240-L310
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bda486ac7828d0adaea2a128154d0a554be7ef37
train
to_meshpoint
地域メッシュコードから緯度経度を算出する。 下記のメッシュに対応している。 1次(80km四方):1 40倍(40km四方):40000 20倍(20km四方):20000 16倍(16km四方):16000 2次(10km四方):2 8倍(8km四方):8000 5倍(5km四方):5000 4倍(4km四方):4000 2.5倍(...
jismesh/utils.py
def to_meshpoint(meshcode, lat_multiplier, lon_multiplier): """地域メッシュコードから緯度経度を算出する。 下記のメッシュに対応している。 1次(80km四方):1 40倍(40km四方):40000 20倍(20km四方):20000 16倍(16km四方):16000 2次(10km四方):2 8倍(8km四方):8000 ...
def to_meshpoint(meshcode, lat_multiplier, lon_multiplier): """地域メッシュコードから緯度経度を算出する。 下記のメッシュに対応している。 1次(80km四方):1 40倍(40km四方):40000 20倍(20km四方):20000 16倍(16km四方):16000 2次(10km四方):2 8倍(8km四方):8000 ...
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hni14/jismesh
python
https://github.com/hni14/jismesh/blob/bda486ac7828d0adaea2a128154d0a554be7ef37/jismesh/utils.py#L312-L811
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bda486ac7828d0adaea2a128154d0a554be7ef37
train
check
Check the permissions, http method and login state.
follow/views.py
def check(func): """ Check the permissions, http method and login state. """ def iCheck(request, *args, **kwargs): if not request.method == "POST": return HttpResponseBadRequest("Must be POST request.") follow = func(request, *args, **kwargs) if request.is_ajax(): ...
def check(func): """ Check the permissions, http method and login state. """ def iCheck(request, *args, **kwargs): if not request.method == "POST": return HttpResponseBadRequest("Must be POST request.") follow = func(request, *args, **kwargs) if request.is_ajax(): ...
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caffeinehit/django-follow
python
https://github.com/caffeinehit/django-follow/blob/765a4795e58f57fbf96efdb7838d0c7222db2e56/follow/views.py#L7-L30
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765a4795e58f57fbf96efdb7838d0c7222db2e56
train
register
This registers any model class to be follow-able.
follow/utils.py
def register(model, field_name=None, related_name=None, lookup_method_name='get_follows'): """ This registers any model class to be follow-able. """ if model in registry: return registry.append(model) if not field_name: field_name = 'target_%s' % model._meta.module_nam...
def register(model, field_name=None, related_name=None, lookup_method_name='get_follows'): """ This registers any model class to be follow-able. """ if model in registry: return registry.append(model) if not field_name: field_name = 'target_%s' % model._meta.module_nam...
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caffeinehit/django-follow
python
https://github.com/caffeinehit/django-follow/blob/765a4795e58f57fbf96efdb7838d0c7222db2e56/follow/utils.py#L9-L30
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765a4795e58f57fbf96efdb7838d0c7222db2e56
train
follow
Make a user follow an object
follow/utils.py
def follow(user, obj): """ Make a user follow an object """ follow, created = Follow.objects.get_or_create(user, obj) return follow
def follow(user, obj): """ Make a user follow an object """ follow, created = Follow.objects.get_or_create(user, obj) return follow
[ "Make", "a", "user", "follow", "an", "object" ]
caffeinehit/django-follow
python
https://github.com/caffeinehit/django-follow/blob/765a4795e58f57fbf96efdb7838d0c7222db2e56/follow/utils.py#L32-L35
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765a4795e58f57fbf96efdb7838d0c7222db2e56
train
unfollow
Make a user unfollow an object
follow/utils.py
def unfollow(user, obj): """ Make a user unfollow an object """ try: follow = Follow.objects.get_follows(obj).get(user=user) follow.delete() return follow except Follow.DoesNotExist: pass
def unfollow(user, obj): """ Make a user unfollow an object """ try: follow = Follow.objects.get_follows(obj).get(user=user) follow.delete() return follow except Follow.DoesNotExist: pass
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caffeinehit/django-follow
python
https://github.com/caffeinehit/django-follow/blob/765a4795e58f57fbf96efdb7838d0c7222db2e56/follow/utils.py#L37-L44
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765a4795e58f57fbf96efdb7838d0c7222db2e56
train
toggle
Toggles a follow status. Useful function if you don't want to perform follow checks but just toggle it on / off.
follow/utils.py
def toggle(user, obj): """ Toggles a follow status. Useful function if you don't want to perform follow checks but just toggle it on / off. """ if Follow.objects.is_following(user, obj): return unfollow(user, obj) return follow(user, obj)
def toggle(user, obj): """ Toggles a follow status. Useful function if you don't want to perform follow checks but just toggle it on / off. """ if Follow.objects.is_following(user, obj): return unfollow(user, obj) return follow(user, obj)
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caffeinehit/django-follow
python
https://github.com/caffeinehit/django-follow/blob/765a4795e58f57fbf96efdb7838d0c7222db2e56/follow/utils.py#L46-L51
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765a4795e58f57fbf96efdb7838d0c7222db2e56
train
SearchSerializer.validate_q_time
Would be for example: [2013-03-01 TO 2013-04-01T00:00:00] and/or [* TO *] Returns a valid sorl value. [2013-03-01T00:00:00Z TO 2013-04-01T00:00:00Z] and/or [* TO *]
hypermap/search_api/serializers.py
def validate_q_time(self, value): """ Would be for example: [2013-03-01 TO 2013-04-01T00:00:00] and/or [* TO *] Returns a valid sorl value. [2013-03-01T00:00:00Z TO 2013-04-01T00:00:00Z] and/or [* TO *] """ if value: try: range = utils.parse_datetime_r...
def validate_q_time(self, value): """ Would be for example: [2013-03-01 TO 2013-04-01T00:00:00] and/or [* TO *] Returns a valid sorl value. [2013-03-01T00:00:00Z TO 2013-04-01T00:00:00Z] and/or [* TO *] """ if value: try: range = utils.parse_datetime_r...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search_api/serializers.py#L114-L126
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
SearchSerializer.validate_q_geo
Would be for example: [-90,-180 TO 90,180]
hypermap/search_api/serializers.py
def validate_q_geo(self, value): """ Would be for example: [-90,-180 TO 90,180] """ if value: try: rectangle = utils.parse_geo_box(value) return "[{0},{1} TO {2},{3}]".format( rectangle.bounds[0], rectang...
def validate_q_geo(self, value): """ Would be for example: [-90,-180 TO 90,180] """ if value: try: rectangle = utils.parse_geo_box(value) return "[{0},{1} TO {2},{3}]".format( rectangle.bounds[0], rectang...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search_api/serializers.py#L128-L144
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
SearchSerializer.validate_a_time_filter
Would be for example: [2013-03-01 TO 2013-04-01:00:00:00] and/or [* TO *]
hypermap/search_api/serializers.py
def validate_a_time_filter(self, value): """ Would be for example: [2013-03-01 TO 2013-04-01:00:00:00] and/or [* TO *] """ if value: try: utils.parse_datetime_range(value) except Exception as e: raise serializers.ValidationError(e.m...
def validate_a_time_filter(self, value): """ Would be for example: [2013-03-01 TO 2013-04-01:00:00:00] and/or [* TO *] """ if value: try: utils.parse_datetime_range(value) except Exception as e: raise serializers.ValidationError(e.m...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search_api/serializers.py#L146-L156
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
FollowManager.fname
Return the field name on the :class:`Follow` model for ``model_or_obj_or_qs``.
follow/models.py
def fname(self, model_or_obj_or_qs): """ Return the field name on the :class:`Follow` model for ``model_or_obj_or_qs``. """ if isinstance(model_or_obj_or_qs, QuerySet): _, fname = model_map[model_or_obj_or_qs.model] else: cls = model_or_obj_or_qs if inspe...
def fname(self, model_or_obj_or_qs): """ Return the field name on the :class:`Follow` model for ``model_or_obj_or_qs``. """ if isinstance(model_or_obj_or_qs, QuerySet): _, fname = model_map[model_or_obj_or_qs.model] else: cls = model_or_obj_or_qs if inspe...
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caffeinehit/django-follow
python
https://github.com/caffeinehit/django-follow/blob/765a4795e58f57fbf96efdb7838d0c7222db2e56/follow/models.py#L10-L19
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765a4795e58f57fbf96efdb7838d0c7222db2e56
train
FollowManager.create
Create a new follow link between a user and an object of a registered model type.
follow/models.py
def create(self, user, obj, **kwargs): """ Create a new follow link between a user and an object of a registered model type. """ follow = Follow(user=user) follow.target = obj follow.save() return follow
def create(self, user, obj, **kwargs): """ Create a new follow link between a user and an object of a registered model type. """ follow = Follow(user=user) follow.target = obj follow.save() return follow
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caffeinehit/django-follow
python
https://github.com/caffeinehit/django-follow/blob/765a4795e58f57fbf96efdb7838d0c7222db2e56/follow/models.py#L21-L30
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765a4795e58f57fbf96efdb7838d0c7222db2e56
train
FollowManager.get_or_create
Almost the same as `FollowManager.objects.create` - behaves the same as the normal `get_or_create` methods in django though. Returns a tuple with the `Follow` and either `True` or `False`
follow/models.py
def get_or_create(self, user, obj, **kwargs): """ Almost the same as `FollowManager.objects.create` - behaves the same as the normal `get_or_create` methods in django though. Returns a tuple with the `Follow` and either `True` or `False` """ if not self.is_following(...
def get_or_create(self, user, obj, **kwargs): """ Almost the same as `FollowManager.objects.create` - behaves the same as the normal `get_or_create` methods in django though. Returns a tuple with the `Follow` and either `True` or `False` """ if not self.is_following(...
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caffeinehit/django-follow
python
https://github.com/caffeinehit/django-follow/blob/765a4795e58f57fbf96efdb7838d0c7222db2e56/follow/models.py#L32-L42
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765a4795e58f57fbf96efdb7838d0c7222db2e56
train
FollowManager.is_following
Returns `True` or `False`
follow/models.py
def is_following(self, user, obj): """ Returns `True` or `False` """ if isinstance(user, AnonymousUser): return False return 0 < self.get_follows(obj).filter(user=user).count()
def is_following(self, user, obj): """ Returns `True` or `False` """ if isinstance(user, AnonymousUser): return False return 0 < self.get_follows(obj).filter(user=user).count()
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caffeinehit/django-follow
python
https://github.com/caffeinehit/django-follow/blob/765a4795e58f57fbf96efdb7838d0c7222db2e56/follow/models.py#L44-L48
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765a4795e58f57fbf96efdb7838d0c7222db2e56
train
FollowManager.get_follows
Returns all the followers of a model, an object or a queryset.
follow/models.py
def get_follows(self, model_or_obj_or_qs): """ Returns all the followers of a model, an object or a queryset. """ fname = self.fname(model_or_obj_or_qs) if isinstance(model_or_obj_or_qs, QuerySet): return self.filter(**{'%s__in' % fname: model_or_obj_or_qs}) ...
def get_follows(self, model_or_obj_or_qs): """ Returns all the followers of a model, an object or a queryset. """ fname = self.fname(model_or_obj_or_qs) if isinstance(model_or_obj_or_qs, QuerySet): return self.filter(**{'%s__in' % fname: model_or_obj_or_qs}) ...
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caffeinehit/django-follow
python
https://github.com/caffeinehit/django-follow/blob/765a4795e58f57fbf96efdb7838d0c7222db2e56/follow/models.py#L50-L62
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765a4795e58f57fbf96efdb7838d0c7222db2e56
train
FIRDeconvolution.create_event_regressors
create_event_regressors creates the part of the design matrix corresponding to one event type. :param event_times_indices: indices in the resampled data, on which the events occurred. :type event_times_indices: numpy array, (nr_events) :param covariates: covariates belonging to thi...
src/FIRDeconvolution.py
def create_event_regressors(self, event_times_indices, covariates = None, durations = None): """create_event_regressors creates the part of the design matrix corresponding to one event type. :param event_times_indices: indices in the resampled data, on which the events occurred. :type ...
def create_event_regressors(self, event_times_indices, covariates = None, durations = None): """create_event_regressors creates the part of the design matrix corresponding to one event type. :param event_times_indices: indices in the resampled data, on which the events occurred. :type ...
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tknapen/FIRDeconvolution
python
https://github.com/tknapen/FIRDeconvolution/blob/6263496a356c449062fe4c216fef56541f6dc151/src/FIRDeconvolution.py#L121-L172
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6263496a356c449062fe4c216fef56541f6dc151
train
FIRDeconvolution.create_design_matrix
create_design_matrix calls create_event_regressors for each of the covariates in the self.covariates dict. self.designmatrix is created and is shaped (nr_regressors, self.resampled_signal.shape[-1])
src/FIRDeconvolution.py
def create_design_matrix(self, demean = False, intercept = True): """create_design_matrix calls create_event_regressors for each of the covariates in the self.covariates dict. self.designmatrix is created and is shaped (nr_regressors, self.resampled_signal.shape[-1]) """ self.design_matrix = np....
def create_design_matrix(self, demean = False, intercept = True): """create_design_matrix calls create_event_regressors for each of the covariates in the self.covariates dict. self.designmatrix is created and is shaped (nr_regressors, self.resampled_signal.shape[-1]) """ self.design_matrix = np....
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tknapen/FIRDeconvolution
python
https://github.com/tknapen/FIRDeconvolution/blob/6263496a356c449062fe4c216fef56541f6dc151/src/FIRDeconvolution.py#L174-L200
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6263496a356c449062fe4c216fef56541f6dc151
train
FIRDeconvolution.add_continuous_regressors_to_design_matrix
add_continuous_regressors_to_design_matrix appends continuously sampled regressors to the existing design matrix. One uses this addition to the design matrix when one expects the data to contain nuisance factors that aren't tied to the moments of specific events. For instance, in fMRI analysis this allows us to add car...
src/FIRDeconvolution.py
def add_continuous_regressors_to_design_matrix(self, regressors): """add_continuous_regressors_to_design_matrix appends continuously sampled regressors to the existing design matrix. One uses this addition to the design matrix when one expects the data to contain nuisance factors that aren't tied to the moments...
def add_continuous_regressors_to_design_matrix(self, regressors): """add_continuous_regressors_to_design_matrix appends continuously sampled regressors to the existing design matrix. One uses this addition to the design matrix when one expects the data to contain nuisance factors that aren't tied to the moments...
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tknapen/FIRDeconvolution
python
https://github.com/tknapen/FIRDeconvolution/blob/6263496a356c449062fe4c216fef56541f6dc151/src/FIRDeconvolution.py#L202-L215
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6263496a356c449062fe4c216fef56541f6dc151
train
FIRDeconvolution.regress
regress performs linear least squares regression of the designmatrix on the data. :param method: method, or backend to be used for the regression analysis. :type method: string, one of ['lstsq', 'sm_ols'] :returns: instance variables 'betas' (nr_betas x nr_signals) and 'residuals' ...
src/FIRDeconvolution.py
def regress(self, method = 'lstsq'): """regress performs linear least squares regression of the designmatrix on the data. :param method: method, or backend to be used for the regression analysis. :type method: string, one of ['lstsq', 'sm_ols'] :returns: instance variables ...
def regress(self, method = 'lstsq'): """regress performs linear least squares regression of the designmatrix on the data. :param method: method, or backend to be used for the regression analysis. :type method: string, one of ['lstsq', 'sm_ols'] :returns: instance variables ...
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tknapen/FIRDeconvolution
python
https://github.com/tknapen/FIRDeconvolution/blob/6263496a356c449062fe4c216fef56541f6dc151/src/FIRDeconvolution.py#L217-L239
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6263496a356c449062fe4c216fef56541f6dc151
train
FIRDeconvolution.ridge_regress
perform k-folds cross-validated ridge regression on the design_matrix. To be used when the design matrix contains very collinear regressors. For cross-validation and ridge fitting, we use sklearn's RidgeCV functionality. Note: intercept is not fit, and data are not prenormalized. :param cv: cross-validate...
src/FIRDeconvolution.py
def ridge_regress(self, cv = 20, alphas = None ): """perform k-folds cross-validated ridge regression on the design_matrix. To be used when the design matrix contains very collinear regressors. For cross-validation and ridge fitting, we use sklearn's RidgeCV functionality. Note: intercept is not fit, and data a...
def ridge_regress(self, cv = 20, alphas = None ): """perform k-folds cross-validated ridge regression on the design_matrix. To be used when the design matrix contains very collinear regressors. For cross-validation and ridge fitting, we use sklearn's RidgeCV functionality. Note: intercept is not fit, and data a...
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tknapen/FIRDeconvolution
python
https://github.com/tknapen/FIRDeconvolution/blob/6263496a356c449062fe4c216fef56541f6dc151/src/FIRDeconvolution.py#L241-L260
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6263496a356c449062fe4c216fef56541f6dc151
train
FIRDeconvolution.betas_for_cov
betas_for_cov returns the beta values (i.e. IRF) associated with a specific covariate. :param covariate: name of covariate. :type covariate: string
src/FIRDeconvolution.py
def betas_for_cov(self, covariate = '0'): """betas_for_cov returns the beta values (i.e. IRF) associated with a specific covariate. :param covariate: name of covariate. :type covariate: string """ # find the index in the designmatrix of the current covariate this...
def betas_for_cov(self, covariate = '0'): """betas_for_cov returns the beta values (i.e. IRF) associated with a specific covariate. :param covariate: name of covariate. :type covariate: string """ # find the index in the designmatrix of the current covariate this...
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tknapen/FIRDeconvolution
python
https://github.com/tknapen/FIRDeconvolution/blob/6263496a356c449062fe4c216fef56541f6dc151/src/FIRDeconvolution.py#L262-L270
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6263496a356c449062fe4c216fef56541f6dc151
train
FIRDeconvolution.betas_for_events
betas_for_events creates an internal self.betas_per_event_type array, of (nr_covariates x self.devonvolution_interval_size), which holds the outcome betas per event type,in the order generated by self.covariates.keys()
src/FIRDeconvolution.py
def betas_for_events(self): """betas_for_events creates an internal self.betas_per_event_type array, of (nr_covariates x self.devonvolution_interval_size), which holds the outcome betas per event type,in the order generated by self.covariates.keys() """ self.betas_per_event_type = np.ze...
def betas_for_events(self): """betas_for_events creates an internal self.betas_per_event_type array, of (nr_covariates x self.devonvolution_interval_size), which holds the outcome betas per event type,in the order generated by self.covariates.keys() """ self.betas_per_event_type = np.ze...
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tknapen/FIRDeconvolution
python
https://github.com/tknapen/FIRDeconvolution/blob/6263496a356c449062fe4c216fef56541f6dc151/src/FIRDeconvolution.py#L272-L278
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6263496a356c449062fe4c216fef56541f6dc151
train
FIRDeconvolution.predict_from_design_matrix
predict_from_design_matrix predicts signals given a design matrix. :param design_matrix: design matrix from which to predict a signal. :type design_matrix: numpy array, (nr_samples x betas.shape) :returns: predicted signal(s) :rtype: numpy array (nr_signals x nr_samples...
src/FIRDeconvolution.py
def predict_from_design_matrix(self, design_matrix): """predict_from_design_matrix predicts signals given a design matrix. :param design_matrix: design matrix from which to predict a signal. :type design_matrix: numpy array, (nr_samples x betas.shape) :returns: predicted sig...
def predict_from_design_matrix(self, design_matrix): """predict_from_design_matrix predicts signals given a design matrix. :param design_matrix: design matrix from which to predict a signal. :type design_matrix: numpy array, (nr_samples x betas.shape) :returns: predicted sig...
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tknapen/FIRDeconvolution
python
https://github.com/tknapen/FIRDeconvolution/blob/6263496a356c449062fe4c216fef56541f6dc151/src/FIRDeconvolution.py#L280-L298
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6263496a356c449062fe4c216fef56541f6dc151
train
FIRDeconvolution.calculate_rsq
calculate_rsq calculates coefficient of determination, or r-squared, defined here as 1.0 - SS_res / SS_tot. rsq is only calculated for those timepoints in the data for which the design matrix is non-zero.
src/FIRDeconvolution.py
def calculate_rsq(self): """calculate_rsq calculates coefficient of determination, or r-squared, defined here as 1.0 - SS_res / SS_tot. rsq is only calculated for those timepoints in the data for which the design matrix is non-zero. """ assert hasattr(self, 'betas'), 'no betas found, please run ...
def calculate_rsq(self): """calculate_rsq calculates coefficient of determination, or r-squared, defined here as 1.0 - SS_res / SS_tot. rsq is only calculated for those timepoints in the data for which the design matrix is non-zero. """ assert hasattr(self, 'betas'), 'no betas found, please run ...
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tknapen/FIRDeconvolution
python
https://github.com/tknapen/FIRDeconvolution/blob/6263496a356c449062fe4c216fef56541f6dc151/src/FIRDeconvolution.py#L300-L310
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6263496a356c449062fe4c216fef56541f6dc151
train
FIRDeconvolution.bootstrap_on_residuals
bootstrap_on_residuals bootstraps, by shuffling the residuals. bootstrap_on_residuals should only be used on single-channel data, as otherwise the memory load might increase too much. This uses the lstsq backend regression for a single-pass fit across repetitions. Please note that shuffling the residuals may change the...
src/FIRDeconvolution.py
def bootstrap_on_residuals(self, nr_repetitions = 1000): """bootstrap_on_residuals bootstraps, by shuffling the residuals. bootstrap_on_residuals should only be used on single-channel data, as otherwise the memory load might increase too much. This uses the lstsq backend regression for a single-pass fit across ...
def bootstrap_on_residuals(self, nr_repetitions = 1000): """bootstrap_on_residuals bootstraps, by shuffling the residuals. bootstrap_on_residuals should only be used on single-channel data, as otherwise the memory load might increase too much. This uses the lstsq backend regression for a single-pass fit across ...
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tknapen/FIRDeconvolution
python
https://github.com/tknapen/FIRDeconvolution/blob/6263496a356c449062fe4c216fef56541f6dc151/src/FIRDeconvolution.py#L312-L337
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6263496a356c449062fe4c216fef56541f6dc151
train
resource_urls
Global values to pass to templates
hypermap/context_processors.py
def resource_urls(request): """Global values to pass to templates""" url_parsed = urlparse(settings.SEARCH_URL) defaults = dict( APP_NAME=__description__, APP_VERSION=__version__, SITE_URL=settings.SITE_URL.rstrip('/'), SEARCH_TYPE=settings.SEARCH_TYPE, SEARCH_URL=se...
def resource_urls(request): """Global values to pass to templates""" url_parsed = urlparse(settings.SEARCH_URL) defaults = dict( APP_NAME=__description__, APP_VERSION=__version__, SITE_URL=settings.SITE_URL.rstrip('/'), SEARCH_TYPE=settings.SEARCH_TYPE, SEARCH_URL=se...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/context_processors.py#L7-L19
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
index_cached_layers
Index and unindex all layers in the Django cache (Index all layers who have been checked).
hypermap/aggregator/tasks.py
def index_cached_layers(self): """ Index and unindex all layers in the Django cache (Index all layers who have been checked). """ from hypermap.aggregator.models import Layer if SEARCH_TYPE == 'solr': from hypermap.aggregator.solr import SolrHypermap solrobject = SolrHypermap() ...
def index_cached_layers(self): """ Index and unindex all layers in the Django cache (Index all layers who have been checked). """ from hypermap.aggregator.models import Layer if SEARCH_TYPE == 'solr': from hypermap.aggregator.solr import SolrHypermap solrobject = SolrHypermap() ...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/tasks.py#L94-L177
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
remove_service_checks
Remove all checks from a service.
hypermap/aggregator/tasks.py
def remove_service_checks(self, service_id): """ Remove all checks from a service. """ from hypermap.aggregator.models import Service service = Service.objects.get(id=service_id) service.check_set.all().delete() layer_to_process = service.layer_set.all() for layer in layer_to_process: ...
def remove_service_checks(self, service_id): """ Remove all checks from a service. """ from hypermap.aggregator.models import Service service = Service.objects.get(id=service_id) service.check_set.all().delete() layer_to_process = service.layer_set.all() for layer in layer_to_process: ...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/tasks.py#L195-L205
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
index_service
Index a service in search engine.
hypermap/aggregator/tasks.py
def index_service(self, service_id): """ Index a service in search engine. """ from hypermap.aggregator.models import Service service = Service.objects.get(id=service_id) if not service.is_valid: LOGGER.debug('Not indexing service with id %s in search engine as it is not valid' % servi...
def index_service(self, service_id): """ Index a service in search engine. """ from hypermap.aggregator.models import Service service = Service.objects.get(id=service_id) if not service.is_valid: LOGGER.debug('Not indexing service with id %s in search engine as it is not valid' % servi...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/tasks.py#L209-L228
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
index_layer
Index a layer in the search backend. If cache is set, append it to the list, if it isn't send the transaction right away. cache needs memcached to be available.
hypermap/aggregator/tasks.py
def index_layer(self, layer_id, use_cache=False): """ Index a layer in the search backend. If cache is set, append it to the list, if it isn't send the transaction right away. cache needs memcached to be available. """ from hypermap.aggregator.models import Layer layer = Layer.objects.get(i...
def index_layer(self, layer_id, use_cache=False): """ Index a layer in the search backend. If cache is set, append it to the list, if it isn't send the transaction right away. cache needs memcached to be available. """ from hypermap.aggregator.models import Layer layer = Layer.objects.get(i...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/tasks.py#L232-L291
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
unindex_layers_with_issues
Remove the index for layers in search backend, which are linked to an issue.
hypermap/aggregator/tasks.py
def unindex_layers_with_issues(self, use_cache=False): """ Remove the index for layers in search backend, which are linked to an issue. """ from hypermap.aggregator.models import Issue, Layer, Service from django.contrib.contenttypes.models import ContentType layer_type = ContentType.objects.ge...
def unindex_layers_with_issues(self, use_cache=False): """ Remove the index for layers in search backend, which are linked to an issue. """ from hypermap.aggregator.models import Issue, Layer, Service from django.contrib.contenttypes.models import ContentType layer_type = ContentType.objects.ge...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/tasks.py#L295-L310
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
unindex_layer
Remove the index for a layer in the search backend. If cache is set, append it to the list of removed layers, if it isn't send the transaction right away.
hypermap/aggregator/tasks.py
def unindex_layer(self, layer_id, use_cache=False): """ Remove the index for a layer in the search backend. If cache is set, append it to the list of removed layers, if it isn't send the transaction right away. """ from hypermap.aggregator.models import Layer layer = Layer.objects.get(id=layer_...
def unindex_layer(self, layer_id, use_cache=False): """ Remove the index for a layer in the search backend. If cache is set, append it to the list of removed layers, if it isn't send the transaction right away. """ from hypermap.aggregator.models import Layer layer = Layer.objects.get(id=layer_...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/tasks.py#L314-L343
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
index_all_layers
Index all layers in search engine.
hypermap/aggregator/tasks.py
def index_all_layers(self): """ Index all layers in search engine. """ from hypermap.aggregator.models import Layer if not settings.REGISTRY_SKIP_CELERY: layers_cache = set(Layer.objects.filter(is_valid=True).values_list('id', flat=True)) deleted_layers_cache = set(Layer.objects.fil...
def index_all_layers(self): """ Index all layers in search engine. """ from hypermap.aggregator.models import Layer if not settings.REGISTRY_SKIP_CELERY: layers_cache = set(Layer.objects.filter(is_valid=True).values_list('id', flat=True)) deleted_layers_cache = set(Layer.objects.fil...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/tasks.py#L347-L360
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
update_last_wm_layers
Update and index the last added and deleted layers (num_layers) in WorldMap service.
hypermap/aggregator/tasks.py
def update_last_wm_layers(self, service_id, num_layers=10): """ Update and index the last added and deleted layers (num_layers) in WorldMap service. """ from hypermap.aggregator.models import Service LOGGER.debug( 'Updating the index the last %s added and %s deleted layers in WorldMap servi...
def update_last_wm_layers(self, service_id, num_layers=10): """ Update and index the last added and deleted layers (num_layers) in WorldMap service. """ from hypermap.aggregator.models import Service LOGGER.debug( 'Updating the index the last %s added and %s deleted layers in WorldMap servi...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/tasks.py#L364-L399
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
bbox2wktpolygon
Return OGC WKT Polygon of a simple bbox list
hypermap/aggregator/models.py
def bbox2wktpolygon(bbox): """ Return OGC WKT Polygon of a simple bbox list """ try: minx = float(bbox[0]) miny = float(bbox[1]) maxx = float(bbox[2]) maxy = float(bbox[3]) except: LOGGER.debug("Invalid bbox, setting it to a zero POLYGON") minx = 0 ...
def bbox2wktpolygon(bbox): """ Return OGC WKT Polygon of a simple bbox list """ try: minx = float(bbox[0]) miny = float(bbox[1]) maxx = float(bbox[2]) maxy = float(bbox[3]) except: LOGGER.debug("Invalid bbox, setting it to a zero POLYGON") minx = 0 ...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L975-L994
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
create_metadata_record
Create a csw:Record XML document from harvested metadata
hypermap/aggregator/models.py
def create_metadata_record(**kwargs): """ Create a csw:Record XML document from harvested metadata """ if 'srs' in kwargs: srs = kwargs['srs'] else: srs = '4326' modified = '%sZ' % datetime.datetime.utcnow().isoformat().split('.')[0] nsmap = Namespaces().get_namespaces(['c...
def create_metadata_record(**kwargs): """ Create a csw:Record XML document from harvested metadata """ if 'srs' in kwargs: srs = kwargs['srs'] else: srs = '4326' modified = '%sZ' % datetime.datetime.utcnow().isoformat().split('.')[0] nsmap = Namespaces().get_namespaces(['c...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L997-L1042
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
gen_anytext
Convenience function to create bag of words for anytext property
hypermap/aggregator/models.py
def gen_anytext(*args): """ Convenience function to create bag of words for anytext property """ bag = [] for term in args: if term is not None: if isinstance(term, list): for term2 in term: if term2 is not None: bag.a...
def gen_anytext(*args): """ Convenience function to create bag of words for anytext property """ bag = [] for term in args: if term is not None: if isinstance(term, list): for term2 in term: if term2 is not None: bag.a...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L1045-L1060
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
update_layers_wmts
Update layers for an OGC:WMTS service. Sample endpoint: http://map1.vis.earthdata.nasa.gov/wmts-geo/1.0.0/WMTSCapabilities.xml
hypermap/aggregator/models.py
def update_layers_wmts(service): """ Update layers for an OGC:WMTS service. Sample endpoint: http://map1.vis.earthdata.nasa.gov/wmts-geo/1.0.0/WMTSCapabilities.xml """ try: wmts = WebMapTileService(service.url) # set srs # WMTS is always in 4326 srs, created = Spatia...
def update_layers_wmts(service): """ Update layers for an OGC:WMTS service. Sample endpoint: http://map1.vis.earthdata.nasa.gov/wmts-geo/1.0.0/WMTSCapabilities.xml """ try: wmts = WebMapTileService(service.url) # set srs # WMTS is always in 4326 srs, created = Spatia...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L1156-L1235
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
update_layers_geonode_wm
Update layers for a WorldMap instance. Sample endpoint: http://localhost:8000/
hypermap/aggregator/models.py
def update_layers_geonode_wm(service, num_layers=None): """ Update layers for a WorldMap instance. Sample endpoint: http://localhost:8000/ """ wm_api_url = urlparse.urljoin(service.url, 'worldmap/api/2.8/layer/?format=json') if num_layers: total = num_layers else: response =...
def update_layers_geonode_wm(service, num_layers=None): """ Update layers for a WorldMap instance. Sample endpoint: http://localhost:8000/ """ wm_api_url = urlparse.urljoin(service.url, 'worldmap/api/2.8/layer/?format=json') if num_layers: total = num_layers else: response =...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L1238-L1390
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
update_layers_warper
Update layers for a Warper service. Sample endpoint: http://warp.worldmap.harvard.edu/maps
hypermap/aggregator/models.py
def update_layers_warper(service): """ Update layers for a Warper service. Sample endpoint: http://warp.worldmap.harvard.edu/maps """ params = {'field': 'title', 'query': '', 'show_warped': '1', 'format': 'json'} headers = {'Content-Type': 'application/json', 'Accept': 'application/json'} re...
def update_layers_warper(service): """ Update layers for a Warper service. Sample endpoint: http://warp.worldmap.harvard.edu/maps """ params = {'field': 'title', 'query': '', 'show_warped': '1', 'format': 'json'} headers = {'Content-Type': 'application/json', 'Accept': 'application/json'} re...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L1541-L1632
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
update_layers_esri_mapserver
Update layers for an ESRI REST MapServer. Sample endpoint: https://gis.ngdc.noaa.gov/arcgis/rest/services/SampleWorldCities/MapServer/?f=json
hypermap/aggregator/models.py
def update_layers_esri_mapserver(service, greedy_opt=False): """ Update layers for an ESRI REST MapServer. Sample endpoint: https://gis.ngdc.noaa.gov/arcgis/rest/services/SampleWorldCities/MapServer/?f=json """ try: esri_service = ArcMapService(service.url) # set srs # both m...
def update_layers_esri_mapserver(service, greedy_opt=False): """ Update layers for an ESRI REST MapServer. Sample endpoint: https://gis.ngdc.noaa.gov/arcgis/rest/services/SampleWorldCities/MapServer/?f=json """ try: esri_service = ArcMapService(service.url) # set srs # both m...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L1635-L1749
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
update_layers_esri_imageserver
Update layers for an ESRI REST ImageServer. Sample endpoint: https://gis.ngdc.noaa.gov/arcgis/rest/services/bag_bathymetry/ImageServer/?f=json
hypermap/aggregator/models.py
def update_layers_esri_imageserver(service): """ Update layers for an ESRI REST ImageServer. Sample endpoint: https://gis.ngdc.noaa.gov/arcgis/rest/services/bag_bathymetry/ImageServer/?f=json """ try: esri_service = ArcImageService(service.url) # set srs # both mapserver and ...
def update_layers_esri_imageserver(service): """ Update layers for an ESRI REST ImageServer. Sample endpoint: https://gis.ngdc.noaa.gov/arcgis/rest/services/bag_bathymetry/ImageServer/?f=json """ try: esri_service = ArcImageService(service.url) # set srs # both mapserver and ...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L1752-L1813
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
endpointlist_post_save
Used to process the lines of the endpoint list.
hypermap/aggregator/models.py
def endpointlist_post_save(instance, *args, **kwargs): """ Used to process the lines of the endpoint list. """ with open(instance.upload.file.name, mode='rb') as f: lines = f.readlines() for url in lines: if len(url) > 255: LOGGER.debug('Skipping this endpoint, as it is m...
def endpointlist_post_save(instance, *args, **kwargs): """ Used to process the lines of the endpoint list. """ with open(instance.upload.file.name, mode='rb') as f: lines = f.readlines() for url in lines: if len(url) > 255: LOGGER.debug('Skipping this endpoint, as it is m...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L1818-L1835
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
service_pre_save
Used to do a service full check when saving it.
hypermap/aggregator/models.py
def service_pre_save(instance, *args, **kwargs): """ Used to do a service full check when saving it. """ # check if service is unique # we cannot use unique_together as it relies on a combination of fields # from different models (service, resource) exists = Service.objects.filter(url=insta...
def service_pre_save(instance, *args, **kwargs): """ Used to do a service full check when saving it. """ # check if service is unique # we cannot use unique_together as it relies on a combination of fields # from different models (service, resource) exists = Service.objects.filter(url=insta...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L1851-L1868
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
service_post_save
Used to do a service full check when saving it.
hypermap/aggregator/models.py
def service_post_save(instance, *args, **kwargs): """ Used to do a service full check when saving it. """ # check service if instance.is_monitored and settings.REGISTRY_SKIP_CELERY: check_service(instance.id) elif instance.is_monitored: check_service.delay(instance.id)
def service_post_save(instance, *args, **kwargs): """ Used to do a service full check when saving it. """ # check service if instance.is_monitored and settings.REGISTRY_SKIP_CELERY: check_service(instance.id) elif instance.is_monitored: check_service.delay(instance.id)
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L1871-L1880
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
layer_pre_save
Used to check layer validity.
hypermap/aggregator/models.py
def layer_pre_save(instance, *args, **kwargs): """ Used to check layer validity. """ is_valid = True # we do not need to check validity for WM layers if not instance.service.type == 'Hypermap:WorldMap': # 0. a layer is invalid if its service its invalid as well if not instance...
def layer_pre_save(instance, *args, **kwargs): """ Used to check layer validity. """ is_valid = True # we do not need to check validity for WM layers if not instance.service.type == 'Hypermap:WorldMap': # 0. a layer is invalid if its service its invalid as well if not instance...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L1883-L1905
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
layer_post_save
Used to do a layer full check when saving it.
hypermap/aggregator/models.py
def layer_post_save(instance, *args, **kwargs): """ Used to do a layer full check when saving it. """ if instance.is_monitored and instance.service.is_monitored: # index and monitor if not settings.REGISTRY_SKIP_CELERY: check_layer.delay(instance.id) else: check_...
def layer_post_save(instance, *args, **kwargs): """ Used to do a layer full check when saving it. """ if instance.is_monitored and instance.service.is_monitored: # index and monitor if not settings.REGISTRY_SKIP_CELERY: check_layer.delay(instance.id) else: check_...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L1908-L1918
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
issue_post_delete
Used to do reindex layers/services when a issue is removed form them.
hypermap/aggregator/models.py
def issue_post_delete(instance, *args, **kwargs): """ Used to do reindex layers/services when a issue is removed form them. """ LOGGER.debug('Re-adding layer/service to search engine index') if isinstance(instance.content_object, Service): if not settings.REGISTRY_SKIP_CELERY: in...
def issue_post_delete(instance, *args, **kwargs): """ Used to do reindex layers/services when a issue is removed form them. """ LOGGER.debug('Re-adding layer/service to search engine index') if isinstance(instance.content_object, Service): if not settings.REGISTRY_SKIP_CELERY: in...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L1921-L1935
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
Resource.get_checks_admin_reliability_warning_url
When service Realiability is going down users should go to the the check history to find problem causes. :return: admin url with check list for this instance
hypermap/aggregator/models.py
def get_checks_admin_reliability_warning_url(self): """ When service Realiability is going down users should go to the the check history to find problem causes. :return: admin url with check list for this instance """ # TODO: cache this. path = self.get_checks_adm...
def get_checks_admin_reliability_warning_url(self): """ When service Realiability is going down users should go to the the check history to find problem causes. :return: admin url with check list for this instance """ # TODO: cache this. path = self.get_checks_adm...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L261-L275
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
Service.update_layers
Update layers for a service.
hypermap/aggregator/models.py
def update_layers(self): """ Update layers for a service. """ signals.post_save.disconnect(layer_post_save, sender=Layer) try: LOGGER.debug('Updating layers for service id %s' % self.id) if self.type == 'OGC:WMS': update_layers_wms(self) ...
def update_layers(self): """ Update layers for a service. """ signals.post_save.disconnect(layer_post_save, sender=Layer) try: LOGGER.debug('Updating layers for service id %s' % self.id) if self.type == 'OGC:WMS': update_layers_wms(self) ...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L309-L336
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
Service.check_available
Check for availability of a service and provide run metrics.
hypermap/aggregator/models.py
def check_available(self): """ Check for availability of a service and provide run metrics. """ success = True start_time = datetime.datetime.utcnow() message = '' LOGGER.debug('Checking service id %s' % self.id) try: title = None ...
def check_available(self): """ Check for availability of a service and provide run metrics. """ success = True start_time = datetime.datetime.utcnow() message = '' LOGGER.debug('Checking service id %s' % self.id) try: title = None ...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L338-L453
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
Service.update_validity
Update validity of a service.
hypermap/aggregator/models.py
def update_validity(self): """ Update validity of a service. """ # WM is always valid if self.type == 'Hypermap:WorldMap': return signals.post_save.disconnect(service_post_save, sender=Service) try: # some service now must be considered...
def update_validity(self): """ Update validity of a service. """ # WM is always valid if self.type == 'Hypermap:WorldMap': return signals.post_save.disconnect(service_post_save, sender=Service) try: # some service now must be considered...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L455-L497
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
Catalog.get_search_url
resolve the search url no matter if local or remote. :return: url or exception
hypermap/aggregator/models.py
def get_search_url(self): """ resolve the search url no matter if local or remote. :return: url or exception """ if self.is_remote: return self.url return reverse('search_api', args=[self.slug])
def get_search_url(self): """ resolve the search url no matter if local or remote. :return: url or exception """ if self.is_remote: return self.url return reverse('search_api', args=[self.slug])
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L525-L534
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
Layer.get_url_endpoint
Returns the Hypermap endpoint for a layer. This endpoint will be the WMTS MapProxy endpoint, only for WM we use the original endpoint.
hypermap/aggregator/models.py
def get_url_endpoint(self): """ Returns the Hypermap endpoint for a layer. This endpoint will be the WMTS MapProxy endpoint, only for WM we use the original endpoint. """ endpoint = self.url if self.type not in ('Hypermap:WorldMap',): endpoint = 'registry/%s/l...
def get_url_endpoint(self): """ Returns the Hypermap endpoint for a layer. This endpoint will be the WMTS MapProxy endpoint, only for WM we use the original endpoint. """ endpoint = self.url if self.type not in ('Hypermap:WorldMap',): endpoint = 'registry/%s/l...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L573-L584
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
Layer.check_available
Check for availability of a layer and provide run metrics.
hypermap/aggregator/models.py
def check_available(self): """ Check for availability of a layer and provide run metrics. """ success = True start_time = datetime.datetime.utcnow() message = '' LOGGER.debug('Checking layer id %s' % self.id) signals.post_save.disconnect(layer_post_save, ...
def check_available(self): """ Check for availability of a layer and provide run metrics. """ success = True start_time = datetime.datetime.utcnow() message = '' LOGGER.debug('Checking layer id %s' % self.id) signals.post_save.disconnect(layer_post_save, ...
[ "Check", "for", "availability", "of", "a", "layer", "and", "provide", "run", "metrics", "." ]
cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L800-L837
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
Layer.registry_tags
Get extra metadata tagged with a registry keyword. For example: <registry:property name="nomination/serviceOwner" value="True"/> <registry:property name="nominator/name" value="Random Person"/> <registry:property name="nominator/email" value="contact@example.com"/> ...
hypermap/aggregator/models.py
def registry_tags(self, query_string='{http://gis.harvard.edu/HHypermap/registry/0.1}property'): """ Get extra metadata tagged with a registry keyword. For example: <registry:property name="nomination/serviceOwner" value="True"/> <registry:property name="nominator/name" v...
def registry_tags(self, query_string='{http://gis.harvard.edu/HHypermap/registry/0.1}property'): """ Get extra metadata tagged with a registry keyword. For example: <registry:property name="nomination/serviceOwner" value="True"/> <registry:property name="nominator/name" v...
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cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/aggregator/models.py#L839-L879
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
_input_github_repo
Grabs input from the user and saves it as their trytravis target repo
trytravis.py
def _input_github_repo(url=None): """ Grabs input from the user and saves it as their trytravis target repo """ if url is None: url = user_input('Input the URL of the GitHub repository ' 'to use as a `trytravis` repository: ') url = url.strip() http_match = _HTTPS_RE...
def _input_github_repo(url=None): """ Grabs input from the user and saves it as their trytravis target repo """ if url is None: url = user_input('Input the URL of the GitHub repository ' 'to use as a `trytravis` repository: ') url = url.strip() http_match = _HTTPS_RE...
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sethmlarson/trytravis
python
https://github.com/sethmlarson/trytravis/blob/d92ed708fe71d8db93a6df8077d23ee39ec0364e/trytravis.py#L86-L125
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d92ed708fe71d8db93a6df8077d23ee39ec0364e
train
_load_github_repo
Loads the GitHub repository from the users config.
trytravis.py
def _load_github_repo(): """ Loads the GitHub repository from the users config. """ if 'TRAVIS' in os.environ: raise RuntimeError('Detected that we are running in Travis. ' 'Stopping to prevent infinite loops.') try: with open(os.path.join(config_dir, 'repo'), 'r')...
def _load_github_repo(): """ Loads the GitHub repository from the users config. """ if 'TRAVIS' in os.environ: raise RuntimeError('Detected that we are running in Travis. ' 'Stopping to prevent infinite loops.') try: with open(os.path.join(config_dir, 'repo'), 'r')...
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sethmlarson/trytravis
python
https://github.com/sethmlarson/trytravis/blob/d92ed708fe71d8db93a6df8077d23ee39ec0364e/trytravis.py#L128-L138
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d92ed708fe71d8db93a6df8077d23ee39ec0364e
train
_submit_changes_to_github_repo
Temporarily commits local changes and submits them to the GitHub repository that the user has specified. Then reverts the changes to the git repository if a commit was necessary.
trytravis.py
def _submit_changes_to_github_repo(path, url): """ Temporarily commits local changes and submits them to the GitHub repository that the user has specified. Then reverts the changes to the git repository if a commit was necessary. """ try: repo = git.Repo(path) except Exception: r...
def _submit_changes_to_github_repo(path, url): """ Temporarily commits local changes and submits them to the GitHub repository that the user has specified. Then reverts the changes to the git repository if a commit was necessary. """ try: repo = git.Repo(path) except Exception: r...
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sethmlarson/trytravis
python
https://github.com/sethmlarson/trytravis/blob/d92ed708fe71d8db93a6df8077d23ee39ec0364e/trytravis.py#L141-L185
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d92ed708fe71d8db93a6df8077d23ee39ec0364e
train
_wait_for_travis_build
Waits for a Travis build to appear with the given commit SHA
trytravis.py
def _wait_for_travis_build(url, commit, committed_at): """ Waits for a Travis build to appear with the given commit SHA """ print('Waiting for a Travis build to appear ' 'for `%s` after `%s`...' % (commit, committed_at)) import requests slug = _slug_from_url(url) start_time = time.time() ...
def _wait_for_travis_build(url, commit, committed_at): """ Waits for a Travis build to appear with the given commit SHA """ print('Waiting for a Travis build to appear ' 'for `%s` after `%s`...' % (commit, committed_at)) import requests slug = _slug_from_url(url) start_time = time.time() ...
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sethmlarson/trytravis
python
https://github.com/sethmlarson/trytravis/blob/d92ed708fe71d8db93a6df8077d23ee39ec0364e/trytravis.py#L188-L234
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d92ed708fe71d8db93a6df8077d23ee39ec0364e
train
_watch_travis_build
Watches and progressively outputs information about a given Travis build
trytravis.py
def _watch_travis_build(build_id): """ Watches and progressively outputs information about a given Travis build """ import requests try: build_size = None # type: int running = True while running: with requests.get('https://api.travis-ci.org/builds/%d' % build_id, ...
def _watch_travis_build(build_id): """ Watches and progressively outputs information about a given Travis build """ import requests try: build_size = None # type: int running = True while running: with requests.get('https://api.travis-ci.org/builds/%d' % build_id, ...
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sethmlarson/trytravis
python
https://github.com/sethmlarson/trytravis/blob/d92ed708fe71d8db93a6df8077d23ee39ec0364e/trytravis.py#L237-L286
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d92ed708fe71d8db93a6df8077d23ee39ec0364e
train
_travis_job_state
Converts a Travis state into a state character, color, and whether it's still running or a stopped state.
trytravis.py
def _travis_job_state(state): """ Converts a Travis state into a state character, color, and whether it's still running or a stopped state. """ if state in [None, 'queued', 'created', 'received']: return colorama.Fore.YELLOW, '*', True elif state in ['started', 'running']: return coloram...
def _travis_job_state(state): """ Converts a Travis state into a state character, color, and whether it's still running or a stopped state. """ if state in [None, 'queued', 'created', 'received']: return colorama.Fore.YELLOW, '*', True elif state in ['started', 'running']: return coloram...
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sethmlarson/trytravis
python
https://github.com/sethmlarson/trytravis/blob/d92ed708fe71d8db93a6df8077d23ee39ec0364e/trytravis.py#L289-L305
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d92ed708fe71d8db93a6df8077d23ee39ec0364e
train
_slug_from_url
Parses a project slug out of either an HTTPS or SSH URL.
trytravis.py
def _slug_from_url(url): """ Parses a project slug out of either an HTTPS or SSH URL. """ http_match = _HTTPS_REGEX.match(url) ssh_match = _SSH_REGEX.match(url) if not http_match and not ssh_match: raise RuntimeError('Could not parse the URL (`%s`) ' 'for your reposito...
def _slug_from_url(url): """ Parses a project slug out of either an HTTPS or SSH URL. """ http_match = _HTTPS_REGEX.match(url) ssh_match = _SSH_REGEX.match(url) if not http_match and not ssh_match: raise RuntimeError('Could not parse the URL (`%s`) ' 'for your reposito...
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sethmlarson/trytravis
python
https://github.com/sethmlarson/trytravis/blob/d92ed708fe71d8db93a6df8077d23ee39ec0364e/trytravis.py#L308-L318
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d92ed708fe71d8db93a6df8077d23ee39ec0364e
train
_version_string
Gets the output for `trytravis --version`.
trytravis.py
def _version_string(): """ Gets the output for `trytravis --version`. """ platform_system = platform.system() if platform_system == 'Linux': os_name, os_version, _ = platform.dist() else: os_name = platform_system os_version = platform.version() python_version = platform.pyth...
def _version_string(): """ Gets the output for `trytravis --version`. """ platform_system = platform.system() if platform_system == 'Linux': os_name, os_version, _ = platform.dist() else: os_name = platform_system os_version = platform.version() python_version = platform.pyth...
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sethmlarson/trytravis
python
https://github.com/sethmlarson/trytravis/blob/d92ed708fe71d8db93a6df8077d23ee39ec0364e/trytravis.py#L321-L333
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d92ed708fe71d8db93a6df8077d23ee39ec0364e
train
_main
Function that acts just like main() except doesn't catch exceptions.
trytravis.py
def _main(argv): """ Function that acts just like main() except doesn't catch exceptions. """ repo_input_argv = len(argv) == 2 and argv[0] in ['--repo', '-r', '-R'] # We only support a single argv parameter. if len(argv) > 1 and not repo_input_argv: _main(['--help']) # Parse the comman...
def _main(argv): """ Function that acts just like main() except doesn't catch exceptions. """ repo_input_argv = len(argv) == 2 and argv[0] in ['--repo', '-r', '-R'] # We only support a single argv parameter. if len(argv) > 1 and not repo_input_argv: _main(['--help']) # Parse the comman...
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sethmlarson/trytravis
python
https://github.com/sethmlarson/trytravis/blob/d92ed708fe71d8db93a6df8077d23ee39ec0364e/trytravis.py#L343-L388
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d92ed708fe71d8db93a6df8077d23ee39ec0364e
train
main
Main entry point when the user runs the `trytravis` command.
trytravis.py
def main(argv=None): # pragma: no coverage """ Main entry point when the user runs the `trytravis` command. """ try: colorama.init() if argv is None: argv = sys.argv[1:] _main(argv) except RuntimeError as e: print(colorama.Fore.RED + 'ERROR: ' + str...
def main(argv=None): # pragma: no coverage """ Main entry point when the user runs the `trytravis` command. """ try: colorama.init() if argv is None: argv = sys.argv[1:] _main(argv) except RuntimeError as e: print(colorama.Fore.RED + 'ERROR: ' + str...
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sethmlarson/trytravis
python
https://github.com/sethmlarson/trytravis/blob/d92ed708fe71d8db93a6df8077d23ee39ec0364e/trytravis.py#L391-L403
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d92ed708fe71d8db93a6df8077d23ee39ec0364e
train
csw_global_dispatch
pycsw wrapper
hypermap/search/views.py
def csw_global_dispatch(request, url=None, catalog_id=None): """pycsw wrapper""" if request.user.is_authenticated(): # turn on CSW-T settings.REGISTRY_PYCSW['manager']['transactions'] = 'true' env = request.META.copy() # TODO: remove this workaround # HH should be able to pass env['wsgi....
def csw_global_dispatch(request, url=None, catalog_id=None): """pycsw wrapper""" if request.user.is_authenticated(): # turn on CSW-T settings.REGISTRY_PYCSW['manager']['transactions'] = 'true' env = request.META.copy() # TODO: remove this workaround # HH should be able to pass env['wsgi....
[ "pycsw", "wrapper" ]
cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search/views.py#L19-L59
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899a5385b15af7fba190ab4fae1d41e47d155a1b
train
csw_global_dispatch_by_catalog
pycsw wrapper for catalogs
hypermap/search/views.py
def csw_global_dispatch_by_catalog(request, catalog_slug): """pycsw wrapper for catalogs""" catalog = get_object_or_404(Catalog, slug=catalog_slug) if catalog: # define catalog specific settings url = settings.SITE_URL.rstrip('/') + request.path.rstrip('/') return csw_global_dispatch(requ...
def csw_global_dispatch_by_catalog(request, catalog_slug): """pycsw wrapper for catalogs""" catalog = get_object_or_404(Catalog, slug=catalog_slug) if catalog: # define catalog specific settings url = settings.SITE_URL.rstrip('/') + request.path.rstrip('/') return csw_global_dispatch(requ...
[ "pycsw", "wrapper", "for", "catalogs" ]
cga-harvard/Hypermap-Registry
python
https://github.com/cga-harvard/Hypermap-Registry/blob/899a5385b15af7fba190ab4fae1d41e47d155a1b/hypermap/search/views.py#L63-L70
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899a5385b15af7fba190ab4fae1d41e47d155a1b