| # CodiEsp Diagnosis Grounding Data |
|
|
| This repository contains the prepared data files needed to reproduce the |
| CodiEsp-D diagnosis grounding experiments. It is a data artifact only: it does |
| not include experiment code, Slurm scripts, model outputs, logs, or raw source |
| archives. |
|
|
| ## Directory Layout |
|
|
| ```text |
| data/codiesp/ |
| facts_test_full_exact.jsonl |
| evidence_relocations_full_exact.jsonl |
| stats_full_exact.json |
| test_docs_full_exact.txt |
| spotcheck_50_full_exact.tsv |
| |
| index/icd10cm_fy2018/ |
| icd10cm_fy2018_retrieval.jsonl |
| code_metadata.jsonl |
| inventory_manifest.json |
| self_retrieval_probe.json |
| |
| schema/icd10cm/ |
| normalization_map.json |
| vocab_family.json |
| vocab_role.json |
| vocab_qualifier.json |
| vocab_scope.json |
| vocab_temporal.json |
| vocab_temporal_raw.json |
| ``` |
|
|
| ## Main Evaluation File |
|
|
| ```text |
| data/codiesp/facts_test_full_exact.jsonl |
| ``` |
|
|
| This is the prepared CodiEsp-D test set used by the second-domain experiments. |
| It contains the exact-English-relocation slice of the official CodiEsp test |
| split. |
|
|
| Summary from `data/codiesp/stats_full_exact.json`: |
|
|
| - Source documents: 250 |
| - Target facts: 3,144 |
| - Unique gold diagnosis codes: 958 |
| - Exact relocation parse rate: 1.0 |
| - Exact substring rate: 1.0 |
|
|
| Each JSONL row contains the clinical mention, English context fields, document |
| identifier, one gold diagnosis code, and relocation metadata. |
|
|
| ## Relocation Files |
|
|
| ```text |
| data/codiesp/evidence_relocations_full_exact.jsonl |
| data/codiesp/spotcheck_50_full_exact.tsv |
| ``` |
|
|
| These files document how Spanish CodiEsp diagnosis spans were relocated into |
| the English context used for retrieval. The evaluation JSONL keeps only facts |
| with exact English substring relocation. |
|
|
| ## Retrieval Inventory |
|
|
| ```text |
| index/icd10cm_fy2018/icd10cm_fy2018_retrieval.jsonl |
| ``` |
|
|
| This is the candidate label inventory used by retrieval. It contains 71,344 |
| candidate diagnosis-code entries. Each entry contains a code identifier, |
| canonical English label, retrieval/documentation text, and structural metadata. |
|
|
| Inventory construction metadata is in: |
|
|
| ```text |
| index/icd10cm_fy2018/inventory_manifest.json |
| ``` |
|
|
| ## Schema Files |
|
|
| ```text |
| schema/icd10cm/ |
| ``` |
|
|
| This directory contains the controlled vocabularies and normalization map used |
| by the CodiEsp structured grounding schema. |
|
|
| ## Not Included |
|
|
| The following are intentionally excluded: |
|
|
| - Experiment code and Slurm scripts. |
| - Model outputs and intermediate run files. |
| - Slurm logs. |
| - Raw downloaded CodiEsp or diagnosis-code archives. |
| - Python bytecode caches. |
|
|
| `MANIFEST.tsv` lists the files in this data artifact with byte sizes. |
|
|
