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6f98b99724820bb3eb03c89ec895b1443fbf2b05
subsection
2
19
Introduction
Of course, in our setting, we are dealing with sequence length, not computing time, but the two problems have an analogous flavour.In the next section, we describe a general framework for discussing these issues, and we exhibit an (abstract) example where the sequence length required to test a discrete parameter is far...
{ "cite_spans": [] }
0807.1756
Phylogenetic information complexity: Is testing a tree easier than finding it?
[ "Mike Steel", "Laszlo Szekely", "Elchanan Mossel" ]
[ "q-bio.PE", "q-bio.QM" ]
2,008
en
Quantitative Biology
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08577386b8dda59de1e28d502e8d4c062c97feb7
subsection
3
19
Testing versus reconstructing
In this section, we describe definitions and properties of testing and reconstructing in a general setting; we will specialize our approach to the phylogenetic setting in the following section.Suppose A=A_n and U= U_n are finite sets, and that we have a random variable X=X_{(a,\theta )} taking values in U and whose dis...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 1612, "openalex_id": "", "raw": "Steel, M.A., Székely, L.A., 2008. Inverting random functions III: Discrete maximum likelihood revisited. Ann. Comb, in revision, (preprint arXiv:math/0608273).", "source_ref_id": "473dab609f9...
0807.1756
Phylogenetic information complexity: Is testing a tree easier than finding it?
[ "Mike Steel", "Laszlo Szekely", "Elchanan Mossel" ]
[ "q-bio.PE", "q-bio.QM" ]
2,008
en
Quantitative Biology
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48965ec33ae42a78dc86fd805024682339fe371b
subsection
4
19
Definitions: Reconstruction, testing and accuracy
Throughout we will let (X_{(a, \theta )}^1, \ldots X_{(a, \theta )}^k) denote a sequence of k i.i.d. observations generated by (a, \theta ).A reconstruction method R is a random variableReconstruction is often viewed as a deterministic function, but in reality, most methods have to break ties and so allowing R to be ra...
{ "cite_spans": [] }
0807.1756
Phylogenetic information complexity: Is testing a tree easier than finding it?
[ "Mike Steel", "Laszlo Szekely", "Elchanan Mossel" ]
[ "q-bio.PE", "q-bio.QM" ]
2,008
en
Quantitative Biology
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a38c6ec844c8dd4802ca3f23ad46f0192599f529
subsection
5
19
Definitions: Reconstruction, testing and accuracy
We say that a testing process has accuracy 1-\epsilon (for k samples) if for all a \in A, and \theta \in \Theta (a), the following two conditions hold:{\mathbb {P}}(\psi (a, (X^1_{(a,\theta )}, \ldots , X^k_{(a,\theta )})) = {\rm true}) \ge 1- \epsilon ,and for any b \ne a, and \theta ^{\prime } \in \Theta (b),{\mathbb...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 2007, "openalex_id": "", "raw": "Steel, M.A., Székely, L.A., 1999. Inverting random functions. Ann. Comb. 3, 103–113.", "source_ref_id": "15c7323401579d36dc5ee6082b8e0eaa4f5eb099", "start": 1959 } ] }
0807.1756
Phylogenetic information complexity: Is testing a tree easier than finding it?
[ "Mike Steel", "Laszlo Szekely", "Elchanan Mossel" ]
[ "q-bio.PE", "q-bio.QM" ]
2,008
en
Quantitative Biology
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36311c099fe9d6252f709e7fc5bbaebe8a973dde
subsection
6
19
Definitions: Reconstruction, testing and accuracy
For Part (ii), let U = \lbrace 1, \ldots , n\rbrace and let A be a collection of subsets of U with the property that for any two elements a,a^{\prime } \in A:\frac{|a \cap a^{\prime } |}{\min \lbrace |a|, |a^{\prime }|\rbrace } \le \epsilon .Consider the following simply-parameterized random variable X_a (a \in A) defi...
{ "cite_spans": [] }
0807.1756
Phylogenetic information complexity: Is testing a tree easier than finding it?
[ "Mike Steel", "Laszlo Szekely", "Elchanan Mossel" ]
[ "q-bio.PE", "q-bio.QM" ]
2,008
en
Quantitative Biology
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597a35852c4f08aac7104f7e4cfaf820012e7947
subsection
7
19
Definitions: Reconstruction, testing and accuracy
The following lemma follows easily from the definitions.Lemma 2.2 Given a parameterized random variable X_{(a, \theta )} and an associated reconstruction method R with accuracy 1-\epsilon , the associated testing process \psi _{R} has reconstruction accuracy 1-\epsilon .In summary, it is clear that in general, `testin...
{ "cite_spans": [] }
0807.1756
Phylogenetic information complexity: Is testing a tree easier than finding it?
[ "Mike Steel", "Laszlo Szekely", "Elchanan Mossel" ]
[ "q-bio.PE", "q-bio.QM" ]
2,008
en
Quantitative Biology
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2de4781a8dc07e8725bceed317fbc8af771ff2e4
subsection
8
19
Testing versus reconstruction in phylogenetics
A phylogenetic (X–) tree is a tree , whose leaf set X is labelled and whose interior vertices are unlabeled and of degree at least 3. If, in addition, every interior vertex of has degree exactly 3 then is said to be {\em binary}. Without loss of generality, we can usually take X={1, ..., n}. In this section, we special...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 1250, "openalex_id": "", "raw": "Daskalakis, C., Mossel E., Roch, S., 2006. Optimal Phylogenetic Reconstruction, in Proceedings of the thirty-eighth annual ACM symposium on Theory of computing (STOC 2006). 159–168.", "source...
0807.1756
Phylogenetic information complexity: Is testing a tree easier than finding it?
[ "Mike Steel", "Laszlo Szekely", "Elchanan Mossel" ]
[ "q-bio.PE", "q-bio.QM" ]
2,008
en
Quantitative Biology
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51104902a00f08b56ab0fc95f7a30e8e609e183e
subsection
9
19
Testing for a finite-state Markov process requires at least
Finite-state Markov processes on trees underlie many approaches in molecular phylogenetics (see, for example, ). We provide a brief formal description; for more details, the reader may wish to consult or . [Figure: (a): In a finite-state Markov process, a random state (\alpha ) at some vertex (w) evolves along the arcs...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 112, "openalex_id": "", "raw": "Felsenstein, J., 2003. Inferring phylogenies. Sinauer Press.", "source_ref_id": "612006f2c743e30a152e6f5eb07c578cb3313199", "start": 0 }, { "arxiv_id": "", "doi": "",...
0807.1756
Phylogenetic information complexity: Is testing a tree easier than finding it?
[ "Mike Steel", "Laszlo Szekely", "Elchanan Mossel" ]
[ "q-bio.PE", "q-bio.QM" ]
2,008
en
Quantitative Biology
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846f6987962c71c5f841f3bf4ce91ee4c6408444
subsection
10
19
Testing for a finite-state Markov process requires at least
Then any testing procedure that has accuracy > \frac{1}{2} requires k to grow at least at the rate \log (n), even in the simply-parameterized setting where all edge lengths are equal to a fixed strictly positive value.Remark: Theorem REF should be viewed alongside the result of , which shows that tree reconstruction (u...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 572, "openalex_id": "", "raw": "Daskalakis, C., Mossel E., Roch, S., 2006. Optimal Phylogenetic Reconstruction, in Proceedings of the thirty-eighth annual ACM symposium on Theory of computing (STOC 2006). 159–168.", "source_...
0807.1756
Phylogenetic information complexity: Is testing a tree easier than finding it?
[ "Mike Steel", "Laszlo Szekely", "Elchanan Mossel" ]
[ "q-bio.PE", "q-bio.QM" ]
2,008
en
Quantitative Biology
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b6aa7ed3c7f0775f19e8c902ac5b1626f9c09ee4
subsection
11
19
Testing for a finite-state Markov process requires at least
Let R: U^k \rightarrow \lbrace a, *\rbrace be defined as follows:R({\bf u}) = {\left\lbrace \begin{array}{ll} a, & \mbox{if $\psi (a, {\bf u}) =$ true;}\\ *, & \mbox{if $\psi (a, {\bf u}) =$ false.} \end{array}\right.}Then, \rho _a^R = {\mathbb {P}}(\psi (a, (X_{(a, \theta )}^1, \ldots X_{(a, \theta )}^k)) = {\rm true}...
{ "cite_spans": [] }
0807.1756
Phylogenetic information complexity: Is testing a tree easier than finding it?
[ "Mike Steel", "Laszlo Szekely", "Elchanan Mossel" ]
[ "q-bio.PE", "q-bio.QM" ]
2,008
en
Quantitative Biology
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79f2730cd2ef300275c7330265bbd46f37418784
subsection
12
19
Testing for a finite-state Markov process requires at least
Note that C has the same probability distribution for any element b in A^{\prime } as it does for a, and so, in particular, we have:{\mathbb {P}}_a(C=c) = {\mathbb {P}}_*(C=c)for all choices of c. Thus:d^{(k)}(a, *) = \sum _{{\bf u} \in U^k}|{\mathbb {P}}_a({\bf u})-{\mathbb {P}}_*({\bf u})| = \sum _{\bf u}|\sum _c({\m...
{ "cite_spans": [] }
0807.1756
Phylogenetic information complexity: Is testing a tree easier than finding it?
[ "Mike Steel", "Laszlo Szekely", "Elchanan Mossel" ]
[ "q-bio.PE", "q-bio.QM" ]
2,008
en
Quantitative Biology
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276b6a45093dfe83e49fff502167ac62566d32d6
subsection
13
19
Testing for a finite-state Markov process requires at least
Then:\sum _{\bf u}|Q_a({\bf u})-Q_*({\bf u})| = \sum _{\bf u}|Q_a({\bf u})-\frac{1}{m}\sum _{b \in A^{\prime }} Q_b({\bf u})|.We can rewrite the expression on the right-hand side of (REF ) as:|\sum _{\bf u} Q_a({\bf u})(1- \frac{1}{m}\sum _{b \in A^{\prime }}\frac{Q_b({\bf u})}{Q_a({\bf u})})| \le \sum _{\bf u} Q_a({\b...
{ "cite_spans": [] }
0807.1756
Phylogenetic information complexity: Is testing a tree easier than finding it?
[ "Mike Steel", "Laszlo Szekely", "Elchanan Mossel" ]
[ "q-bio.PE", "q-bio.QM" ]
2,008
en
Quantitative Biology
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49ec4a1d428cb95298e6a6740d6cf6c91fb7e010
subsection
14
19
Testing for a finite-state Markov process requires at least
Thus, by Jensen's inequality:{\mathbb {E}}\left(|\frac{1}{m}\sum _{b \in A^{\prime }} Z_b|\right)^2 \le {\mathbb {E}}\left((\frac{1}{m}\sum _{b \in A^{\prime }} Z_b)^2\right) = \frac{1}{m^2}\sum _{b \in A^{\prime }} {\mathbb {E}}(Z_b^2).Now, since {\mathbb {E}}(Z_b)=0, we have 1 + {\mathbb {E}}(Z_b^2) = {\mathbb {E}}((...
{ "cite_spans": [] }
0807.1756
Phylogenetic information complexity: Is testing a tree easier than finding it?
[ "Mike Steel", "Laszlo Szekely", "Elchanan Mossel" ]
[ "q-bio.PE", "q-bio.QM" ]
2,008
en
Quantitative Biology
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374aadaaa0b11eae1964556cc1f215db657bc649
subsection
15
19
An O(1) test for the random cluster model
In this section, a character (on X) denotes an arbitrary partition \lbrace \alpha _1, \ldots , \alpha _m\rbrace of X into any number of disjoint subsets.In the random cluster model, one has a phylogenetic X–tree and each edge e has an associated probability p(e) that the edge of is cut. These cuts are performed indepen...
{ "cite_spans": [] }
0807.1756
Phylogenetic information complexity: Is testing a tree easier than finding it?
[ "Mike Steel", "Laszlo Szekely", "Elchanan Mossel" ]
[ "q-bio.PE", "q-bio.QM" ]
2,008
en
Quantitative Biology
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23f91189d528595a7e49ad3be4b477e99aaf16aa
subsection
16
19
An O(1) test for the random cluster model
There exist induced rooted phylogenetic subtrees A, B, on leaf sets A and B, respectively, where A, B are disjoint, nonempty subsets of X, such that:(i) A and B are present as pendant subtrees in 1 and 2; and (ii) the root of A and of B are adjacent to a common vertex in 2 but not in 1.The proof is by induction on |X|....
{ "cite_spans": [] }
0807.1756
Phylogenetic information complexity: Is testing a tree easier than finding it?
[ "Mike Steel", "Laszlo Szekely", "Elchanan Mossel" ]
[ "q-bio.PE", "q-bio.QM" ]
2,008
en
Quantitative Biology
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2d694929dd540ed8ffc3826af21f960b2c2fa851
subsection
17
19
An O(1) test for the random cluster model
Let \alpha , \beta denote, respectively, the blocks of the character at vertices u, v of 1, and consider the conjunctive event E = \bigcap _{i=1}^5E_i in which:(E_1) \alpha \ne \beta ; (E_2) at least one leaf of A is present in \alpha ; (E_3) at least one leaf of the other subtree of 1, which is incident with u and doe...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 907, "openalex_id": "", "raw": "Mossel, E., Steel, M., 2004. A phase transition for a random cluster model on phylogenetic trees. Math. Biosci. 187, 189–203.", "source_ref_id": "a9415aea56a336b754fcf8fd593b33c0ea2e8a69", ...
0807.1756
Phylogenetic information complexity: Is testing a tree easier than finding it?
[ "Mike Steel", "Laszlo Szekely", "Elchanan Mossel" ]
[ "q-bio.PE", "q-bio.QM" ]
2,008
en
Quantitative Biology
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afd0a7f3e7521b57b86d38e80682faf613c27f70
subsection
18
19
Concluding comments
The reader may be curious as to where our proof for the \log (n) lower bound on sequence length for testing under the finite-state model breaks down for the random cluster model. The crucial distinction is that the random cluster model fails to satisfy condition (REF ) required in the proof for Theorem REF . That is, i...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 664, "openalex_id": "", "raw": "Huber, K., Moulton, V., Steel, M., 2005. Four characters suffice to convexly define a phylogenetic tree. SIAM J. Discrete Math. 18(4), 835–843.", "source_ref_id": "c6ab61e091431037ea05e5c1178f...
0807.1756
Phylogenetic information complexity: Is testing a tree easier than finding it?
[ "Mike Steel", "Laszlo Szekely", "Elchanan Mossel" ]
[ "q-bio.PE", "q-bio.QM" ]
2,008
en
Quantitative Biology
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1eb3f4deded754f0a90c1298d21547115d05e14a
abstract
0
28
Abstract
We analyze the effective potential for nanoparticles trapped at a fluid interface within a simple model which incorporates surface and line tensions as well as a thermal average over interface fluctuations (capillary waves). For a single colloid, a reduced steepness of the potential well hindering movements out of the ...
{ "cite_spans": [] }
10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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6b582b35885a54d82d51e69db6f86faa645890b2
subsection
1
28
Introduction
The effective forces between rigid objects immersed in a fluctuating medium have attracted a steadily growing interest because their understanding allows one to design and tune them by choosing suitable media and boundary conditions and by varying the thermodynamic state of the medium. Possible applications range from ...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 632, "openalex_id": "", "raw": "Bordag M, Mohideen U and Mostepanenko V M 2001 Phys. Rep. 353 1", "source_ref_id": "8fadad4864b456a26e7ed8ca5b87b54f578ce34c", "start": 409 }, { "arxiv_id": "", "doi"...
10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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71875b963c23f9572585068f43d6e1b2f6142657
subsection
2
28
Free energy model for spherical colloids trapped at interfaces
In this section, we consider the free energy of a single, spherical colloid with radius R trapped at an interface between two phases I and II which is assumed to be flat in equilibrium. The height of the center of the colloid above the interface is denoted by z, and we look for the free energy F of the colloid with z f...
{ "cite_spans": [] }
10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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9318c148491589591b9b08089a4b63856912539d
subsection
3
28
Surface tension
Let \gamma denote the surface tension of the fluid interface and \gamma _{\rm I[II]} denote the surface tension of the colloid surface (with area A_{\rm I[II]}) exposed to phase I [II] (see Fig. REF ). The free energy F(z), measured with respect to the configuration where the colloid is completely immersed in phase I, ...
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10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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1e08a68816ceb3dc135f4781fac4eaf6a17ca665
subsection
4
28
Line tension
The line tension was introduced by Gibbs , to define the excess free energy associated to the line where three phases meet. The accurate experimental measurement of the line tension has been a considerable challenge. In fact, the uncertainty in the order of magnitude of the line tension has generated a considerable num...
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10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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6d1e6e34b2ccb9e3720ae3e9e7ce4ca606a9430e
subsection
5
28
Line tension
The new equilibrium position of the colloid is determined by an equation of fourth order in \hat{z}:\hat{z}_{\rm eq}\left( \frac{\hat{\tau }}{\sqrt{1-\hat{z}_{\rm eq}^2}} -1\right) &=& \cos \theta _0 \;.The spring constant k= F^{\prime \prime }(z_{\rm eq}) of the potential well near the minimum is also modified and bec...
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10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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29209c29fa2dbd476a0d6f9e18b150a1aad00b20
subsection
6
28
Capillary waves
In thermal equilibrium, the interface is not sharp but acquires a finite thickness through density fluctuations. In a coarse–grained picture, these density fluctuations correspond to fluctuations of the mean interface position u(\mathbf {x}) around the equilibrium position u=0. Here, \mathbf {x} = (x,y) is a vector in ...
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10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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869d082f81145f8101da71e952d59a43ddc34345
subsection
7
28
Capillary waves
Therefore\mathcal {H}[u(\mathbf {x}),z] &=& (F_{\rm men}[\lbrace u(\mathbf {x}),z\rbrace ] - F_{\rm men}[\lbrace 0,z_{\rm eq}\rbrace ]) +\gamma _{\rm I}\Delta A_{\rm I} +\gamma _{\rm II}\Delta A_{\rm II} + \tau \Delta LThe difference in the interface areas colloid/phase I and colloid/phase II between the configuration ...
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10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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6e888900fcf0525f65dbbfecfa15189c220fe6a6
subsection
8
28
Capillary waves
The Fourier coefficients P_{m} are referred to as contact line multipoles below, and since the contact line height f(\varphi ) is real, P_m=P^*_{-m} holds. With these definitions, the boundary term acquires the form\mathcal {H}_{\rm b}[u(\mathbf {x}),h] &=& \mathcal {H}_{\rm b,1} + \mathcal {H}_{\rm b,2}\,, \\ \mathca...
{ "cite_spans": [] }
10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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c555e78c96d889fdb4df788a768575ababf75045
subsection
9
28
Capillary waves
The mean–field part solves the Euler–Lagrange equation (-\Delta +\lambda _c^{-2})\,u_{\rm mf}=0 with the boundary condition u_{\rm mf}\,|_{ \partial S_{\rm men, ref}}=f . Consequently the fluctuation part vanishes at the contact line: v\,|_{ \partial S_{\rm men, ref}}=0. Then the partition function \mathcal {Z}=\mathc...
{ "cite_spans": [] }
10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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19a3504ba87d579bff63fcc969e3673acb47bd79
subsection
10
28
Capillary waves
()) is diagonal in the multipole moments P_m (see ):-\frac{\beta \gamma }{2} \oint _{\partial S_{\rm men, ref}} \!\!\!\!\!\!\!\!\!\! d\ell \, f({\bf x})\,( \partial _n u_{\rm mf}({\bf x})) \stackrel{\lambda _c \gg R}{\simeq } -\pi \beta \gamma \left( \frac{P_0^2}{\ln \hat{\lambda }_c} + 2 \sum _{m> 0} m|P_m|^2 \right)\...
{ "cite_spans": [] }
10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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4f327c8c23ff660716628ff2abffc312e4b80fb4
subsection
11
28
Capillary waves
Thus the effective potential for the colloid moving around its equilibrium position is given byF(z) & = & - \beta ^{-1} \; \ln \mathcal {Z} \\ & = & {\rm const.} + \pi \gamma \, (z-z_{\rm eq})^2\, \frac{ 1 - \frac{\displaystyle \hat{\tau }}{\displaystyle \hat{r}_{0,{\rm eq}}^3}}{1+\ln \hat{\lambda }_c \left(1-\frac{\d...
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10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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d57273d40bdc8718a4946c9728451be0726e708d
subsection
12
28
Capillary waves
Clearly, for arbitrarily small but negative \tau there exists a critical multipole order m_c above which the exponent becomes positive and thus the partition function becomes infinite. Taken at face value, for negative line tensions the interface would become unstable by forming ripples with small wavelengths near the ...
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10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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1ae568f4cef3b2f41ef44506cc6a334e5c9fce65
subsection
13
28
Fluctuation induced forces between two colloids
The previous considerations can be extended to the case of two colloids which are trapped at the interface at distance d. Clearly, if both colloids are at their equilibrium position (defined by Eq. (REF )) and capillary waves are neglected, the interface is flat and therefore no interface–mediated interactions are pres...
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10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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e9b170ad042a927fddb73d95d82dff0c89d6a99e
subsection
14
28
Fluctuation induced forces between two colloids
In the present work, we will show (i) that for case (A2), fixed colloids but unpinned contact line, the effective potential is still long–ranged, V(d) \propto \ln (1+\ln d) and (ii) that line tensions do not change the leading power in the long–range behavior of V(d) but the instability for negative line tensions in th...
{ "cite_spans": [] }
10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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e713239df0f377ce2aa22ebf4d0b32de6d1a4d44
subsection
15
28
Fluctuation induced forces between two colloids
Via the integration domain S_{\rm men,ref} of \mathcal {H}_{\rm cw}, the total Hamiltonian and hence the partition function \mathcal {Z}(d) of the system depends on the distance d of the colloid centers.As before, the fluctuations over the contact lines f_i=\sum _m \exp ({\rm i}m\varphi _i)P_{im} are incorporated into ...
{ "cite_spans": [] }
10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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eb637008a053c61390edb6c43d96ab965438707d
subsection
16
28
Fluctuation induced forces between two colloids
Then the partition function \mathcal {Z}=\mathcal {Z}_{\rm fluc}\mathcal {Z}_{\rm mf} factorises into a product of a fluctuation part independent of the boundary conditions and a mean field part which depends on the fluctuating boundary conditions f_i of the meniscus on the colloid surfaces:\mathcal {Z}_{\rm fluc} &=& ...
{ "cite_spans": [] }
10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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4632f8232cd781b761a7a920b06a1726e3593e57
subsection
17
28
Fluctuation induced forces between two colloids
The techniques to evaluate the fluctuation and mean–field part to the effective potential have been presented in detail in Ref. , and we give a summary of the main results which are necessary to discuss the influence of the line tension terms on V(d).
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10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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98a7d4e3af3fce33868ec7c1783133c6efa7f75b
subsection
18
28
Fluctuation part
The fluctuation part contributes equally for both cases (A1) and (A2) introduced above. The \delta -functions in the fluctuation part of the partition function can be removed by using their integral representation via auxiliary fields \psi _i ({\bf x}_i) defined on the interface boundaries \partial S^0_i  . This enable...
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10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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abcfd19b1da32ae2958f7f254fc11da57fe959ac
subsection
19
28
Mean–field part
The calculation of \mathcal {Z}_{\rm mf} (Eq. (REF )) requires to determine the solution of the differential equation(-\Delta +\lambda _c^{-2})\,u_{\rm mf}=0with the boundary conditions at the fluctuating contact line and at infinity, respectively:\left.u_{\rm mf}({\bf x}_i)\right|_{{\bf x}_i \in \partial S^0_i} &=&f_i...
{ "cite_spans": [] }
10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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f36adda373dc90dd8bc2328feac539e4cf49e98b
subsection
20
28
Mean–field part
(REF ), the mean field part of the partition function \mathcal {Z}_{\rm mf} can be written in a Gaussian form:\mathcal {Z}_{\rm mf} = \int \mathcal {D} f_i\; \exp \left( - \beta \mathcal {H}[u_{\rm mf},d] \right)\; \exp \left\lbrace -\pi \beta \gamma \left(1-\frac{\displaystyle \hat{\tau }}{\displaystyle \hat{r}_{0,{\r...
{ "cite_spans": [] }
10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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cddf00ec1c4fb6f40b8d7f7e58790099a753f5d6
subsection
21
28
Mean–field part
(REF ) that the d–dependent part of \mathcal {Z}_{\rm mf} is given by \det {\bf E}. For the case of vanishing line tension, the properties of \det {\bf E} were discussed in detail in Ref. . In particular it turns out that the four leading terms in the expansion of V_{\rm mf} and V_{\rm fluc} cancel each other (b_m=-a_m...
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10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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277fdedebdc3b8fdd84f4e5b647ee45547c0be56
subsection
22
28
Mean–field part
The dependence on \tau enters through thereduced variable x= \hat{\tau }/r_{0,{\rm eq}}^3 where \hat{\tau }= \tau /(\gamma R)and \hat{r}_{0,{\rm eq}}= r_{0,{\rm eq}}/R.](A2) This case implies fixing the colloids at their equilibrium positions z_{\rm eq}. Thus in the integration measure for the contact line fluctuations...
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10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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f308dffa96f4dc55a1119892ad5a61c923b864df
subsection
23
28
Conclusion
In this paper, we have studied the influence of capillary waves on the stability and interactions of colloids (with radius R) trapped at a fluid interface with surface tension \gamma , with particular attention to the effects of a line tension \tau . Quite often, the stability of colloids at a fluid interface with resp...
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10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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d550006b258938c197f2614d2a81b6cb5cc90700
subsection
24
28
Derivation of the boundary Hamiltonian
In this appendix we derive the boundary term \mathcal {H}_{\rm b} which describes free energy changes upon shifting the contact line (cf. the result in Eqs. (REF )–() of Sec. REF ). According to Eqs. (REF )–(REF ) the boundary term is given by\mathcal {H}_{\rm b}= \gamma _{\rm I}\Delta A_{\rm I}+\gamma _{\rm II}\Delta ...
{ "cite_spans": [] }
10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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37af050b5fc4b155e838ea331ed9cee06671383e
subsection
25
28
Derivation of the boundary Hamiltonian
Then, the associated changes of the free energy can be written as\gamma _{\rm I}\Delta A_{\rm I} +\gamma _{\rm II}\Delta A_{\rm II} &=& \gamma \cos \theta _0 \int _{0}^{2\pi }d\varphi \int _{r_{0,\rm eq}}^{r_0(\varphi )} dr\, \frac{r}{\sqrt{1-r^2/R^2}} \\ &=& -R\gamma \cos \theta _0 \,\int _{0}^{2\pi }d\varphi \,\left[...
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10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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db39b4726ebf36a807c906138f554eac4a49d90a
subsection
26
28
Derivation of the boundary Hamiltonian
(REF ) and using relation (REF ) for the equilibrium position of the colloid (R\cos \theta _0 /z_{\rm eq}=\tau /(\gamma r_{0,\rm eq})-1) we find\gamma _{\rm I}\Delta A_{\rm I} +\gamma _{\rm II}\Delta A_{\rm II} +\gamma \Delta A_{\rm proj} &=& \frac{\gamma }{2}\int _0^{2\pi } d\varphi \, [f-h]^2 - \frac{\tau z_{\rm eq}}...
{ "cite_spans": [] }
10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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d748e5908d8a00a1d3edb2b8e3d9a68ed8240d25
subsection
27
28
Derivation of the mean–field energy term in Eq. (
Let (r,\varphi ) be polar coordinates in the equilibrium interface plane z=0 where r=0 is the center of the circle enclosed by the reference contact line. The solution to the mean–field equation (-\Delta +\lambda _c^{-2})\,u_{\rm mf}=0 with the boundary condition u_{\rm mf}(r_{0,{\rm eq}},\varphi )= f(\varphi ) = \sum...
{ "cite_spans": [] }
10.1088/0953-8984/20/40/404224
0807.1757
Stability and interactions of nanocolloids at fluid interfaces: effects of capillary waves and line tensions
[ "H. Lehle", "M. Oettel" ]
[ "cond-mat.soft" ]
2,008
en
Physics
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a1c9dbea57e3c76a953ae75c7368e9a8a5ee47ca
abstract
0
21
Abstract
We investigate the formation of carbon-enhanced metal-poor (CEMP) stars via the scenario of mass transfer from a carbon-rich asymptotic giant branch (AGB) primary to a low-mass companion in a binary system. We explore the extent to which material accreted from a companion star becomes mixed with that of the recipient, ...
{ "cite_spans": [] }
10.1111/j.1365-2966.2008.13700.x
0807.1758
Thermohaline mixing and gravitational settling in carbon-enhanced metal-poor stars
[ "Richard J. Stancliffe", "Evert Glebbeek" ]
[ "astro-ph" ]
2,008
en
Physics
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768ba4005ab8cd539a66ff3f246c6c000d5eb7f3
subsection
1
21
Introduction
Carbon-enhanced, metal-poor (CEMP) stars are defined as stars with [C/Fe][A/B] = \log (N_\mathrm {A}/N_\mathrm {B}) - \log (N_\mathrm {A}/N_\mathrm {B})_\odot >+1.0 , with [Fe/H]<-2 in most cases. These objects appear with increasing frequency at low metallicity . The study of CEMP stars is being used to probe conditio...
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10.1111/j.1365-2966.2008.13700.x
0807.1758
Thermohaline mixing and gravitational settling in carbon-enhanced metal-poor stars
[ "Richard J. Stancliffe", "Evert Glebbeek" ]
[ "astro-ph" ]
2,008
en
Physics
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a3573e0e3d7be1f1230e978753ab10d1276a8852
subsection
2
21
Introduction
Neither of these scenarios is consistent with the extensive mixing found by .A possible source for reduced thermohaline mixing efficiency has been suggested by . These authors suggest that the action of gravitational settling will alter the composition gradient of the accreting star near its surface. Helium will settle...
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10.1111/j.1365-2966.2008.13700.x
0807.1758
Thermohaline mixing and gravitational settling in carbon-enhanced metal-poor stars
[ "Richard J. Stancliffe", "Evert Glebbeek" ]
[ "astro-ph" ]
2,008
en
Physics
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cc41fcd8c8b01ef9a8e7c9d2cebd3ac33e1c0acb
subsection
3
21
The stellar evolution code
Calculations in this work have been carried out using a modified version of the stars stellar evolution code originally developed by and updated by many authors . The version used here includes the nucleosynthesis routines of and , which follow the nucleosynthesis of 40 isotopes from D to ^{32}\mathrm {S} and important...
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10.1111/j.1365-2966.2008.13700.x
0807.1758
Thermohaline mixing and gravitational settling in carbon-enhanced metal-poor stars
[ "Richard J. Stancliffe", "Evert Glebbeek" ]
[ "astro-ph" ]
2,008
en
Physics
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cf7e3c4cb09c1f3772086170a592b43410c93c9f
subsection
4
21
AGB models
We have evolved a set of models with masses of 1, 1.5, 2, 2.5, 3 and 3.5\,M_\mathrm {\odot } from the pre-main-sequence without the use of convective overshooting. A mixing length of \alpha =2.0 has been employed throughout. This value is chosen based on calibration to a solar model. All the models were evolved using 9...
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10.1111/j.1365-2966.2008.13700.x
0807.1758
Thermohaline mixing and gravitational settling in carbon-enhanced metal-poor stars
[ "Richard J. Stancliffe", "Evert Glebbeek" ]
[ "astro-ph" ]
2,008
en
Physics
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98fe46ee0cafc2479aad82906716f5a69d4855c7
subsection
5
21
AGB models
As mass loss is very rapid in the superwind phase we believe that we have missed only a few thermal pulses (and associated episodes of third dredge-up) at most. We record the final yield, the mass removed and the age of the final model for each of the masses considered. These details are needed to model the accretion o...
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10.1111/j.1365-2966.2008.13700.x
0807.1758
Thermohaline mixing and gravitational settling in carbon-enhanced metal-poor stars
[ "Richard J. Stancliffe", "Evert Glebbeek" ]
[ "astro-ph" ]
2,008
en
Physics
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36df89384d87274a156a19dec3a2adae9eb4355e
subsection
6
21
AGB models
The results are displayed in Figure REF . We note that there is generally good agreement between the 2\,M_\mathrm {\odot } models, with few of the isotopes showing variations of over one order of magnitude. For many of the heavier isotopes, our average compositions tend to lie between those of KL07 and H04. The maximum...
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10.1111/j.1365-2966.2008.13700.x
0807.1758
Thermohaline mixing and gravitational settling in carbon-enhanced metal-poor stars
[ "Richard J. Stancliffe", "Evert Glebbeek" ]
[ "astro-ph" ]
2,008
en
Physics
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c00cc81e1e85f60819254a6d0b14543ba5336aae
subsection
7
21
Cessation of third dredge-up
The 1\,M_\mathrm {\odot } model displays some behaviour not found in the other models, namely that TDUP operates only between pulses 3 and 8 and ceases until the final pulse, where it occurs once more. We believe that the reason for the temporary cessation of TDUP is a consequence of the changing metallicity of the env...
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10.1111/j.1365-2966.2008.13700.x
0807.1758
Thermohaline mixing and gravitational settling in carbon-enhanced metal-poor stars
[ "Richard J. Stancliffe", "Evert Glebbeek" ]
[ "astro-ph" ]
2,008
en
Physics
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2ca88d3bf4d636c95ab4299bce1f84e1c3a24c09
subsection
8
21
CEMP models
We now turn to the modelling of the secondaries in these putative AGB binaries. We assume we are free to choose the primary mass, secondary mass and amount of material accreted to produce a secondary which has the appropriate mass (about 0.8\,M_\mathrm {\odot }, see below). The primary mass determines the composition o...
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10.1111/j.1365-2966.2008.13700.x
0807.1758
Thermohaline mixing and gravitational settling in carbon-enhanced metal-poor stars
[ "Richard J. Stancliffe", "Evert Glebbeek" ]
[ "astro-ph" ]
2,008
en
Physics
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1e6fe01f46918aad82cbbcf5ae8ad3119485024f
subsection
9
21
CEMP models
Figure REF shows the mean molecular weight profile at varies points in the evolution of the model which accretes 0.1\,M_\mathrm {\odot } from a 1.5\,M_\mathrm {\odot } companion with thermohaline mixing taken into account. Initially, the star burns hydrogen in its core, raising the mean molecular weight in the central ...
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10.1111/j.1365-2966.2008.13700.x
0807.1758
Thermohaline mixing and gravitational settling in carbon-enhanced metal-poor stars
[ "Richard J. Stancliffe", "Evert Glebbeek" ]
[ "astro-ph" ]
2,008
en
Physics
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9f4f2fe13e4473680a70833449859513cac2dcb7
subsection
10
21
CEMP models
These plots are representative of the full data set. [Figure: The evolution of the surface [C/H] ratio as a function of luminosity when accreting 0.1\,M_\mathrm {\odot } (solid line), 0.01\,M_\mathrm {\odot } (dotted line) and 0.001\,M_\mathrm {\odot } (dashed line) of material from a 1.5\,M_\mathrm {\odot } companion....
{ "cite_spans": [] }
10.1111/j.1365-2966.2008.13700.x
0807.1758
Thermohaline mixing and gravitational settling in carbon-enhanced metal-poor stars
[ "Richard J. Stancliffe", "Evert Glebbeek" ]
[ "astro-ph" ]
2,008
en
Physics
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8e9e72875e708fab1757bb86f210ee3530b5bee6
subsection
11
21
CEMP models
Models without thermohaline mixing struggle to populate those turn-off stars with low [C/H] values and unless a large quantity of material is accreted, they suffer too much dilution at first dredge-up. Models with thermohaline mixing do not produce the highest [C/H] values as the accreted matter is mixed with the prist...
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10.1111/j.1365-2966.2008.13700.x
0807.1758
Thermohaline mixing and gravitational settling in carbon-enhanced metal-poor stars
[ "Richard J. Stancliffe", "Evert Glebbeek" ]
[ "astro-ph" ]
2,008
en
Physics
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66a3c6ee042d9d4ce39393dcb29ea0cf8e4be0c4
subsection
12
21
CEMP models
This occurs because the convective envelope reaches down to those regions of the star where carbon originally present in the star has been processed to nitrogen via the CN cycle. This rise in [N/H] is exactly what would be expected in a `normal' metal-poor star.The picture is very different for models including thermoh...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 792, "openalex_id": "", "raw": "Stancliffe R. J., Glebbeek E., Izzard R. G., Pols O. R., 2007, A&A, 464, L57", "source_ref_id": "059c19f7f63cd5ab71651a9e06d3f081ba496a95", "start": 624 }, { "arxiv_id": ""...
10.1111/j.1365-2966.2008.13700.x
0807.1758
Thermohaline mixing and gravitational settling in carbon-enhanced metal-poor stars
[ "Richard J. Stancliffe", "Evert Glebbeek" ]
[ "astro-ph" ]
2,008
en
Physics
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b91b8280d549bb4b691fafe910a6d75f52745b58
subsection
13
21
The effect of gravitational settling
There are certainly problems with models including thermohaline mixing from an observational perspective. They do not seem to reproduce those objects with high [C/H] ratios and they imply there should be a population of low [C/H] objects that are not observed. However from the theoretical perspective there are problems...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 605, "openalex_id": "", "raw": "Thompson I. B., Ivans I. I., Bisterzo S., Sneden C., Gallino R., Vauclair S., Burley G. S., Shectman S. A., Preston G. W., 2008, ApJ, 677, 556", "source_ref_id": "0f9c5d3cb18f3f88651b74ebb8bbe...
10.1111/j.1365-2966.2008.13700.x
0807.1758
Thermohaline mixing and gravitational settling in carbon-enhanced metal-poor stars
[ "Richard J. Stancliffe", "Evert Glebbeek" ]
[ "astro-ph" ]
2,008
en
Physics
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738055a1dd714837d36664f6fd7c3e3967d85664
subsection
14
21
The effect of gravitational settling
This leads to the mean molecular weight decreasing in the surface regions (down to a fractional mass of around \mathrm {d}M/M\approx 0.01) and a mean molecular weight gradient building up (see the long-dashed line of the figure). It is this which may potentially inhibit any thermohaline mixing. Note that the mean molec...
{ "cite_spans": [] }
10.1111/j.1365-2966.2008.13700.x
0807.1758
Thermohaline mixing and gravitational settling in carbon-enhanced metal-poor stars
[ "Richard J. Stancliffe", "Evert Glebbeek" ]
[ "astro-ph" ]
2,008
en
Physics
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695d5f92e97009394e7ea360c8029c55261a3ea0
subsection
15
21
The effect of gravitational settling
The accreted material suffers more dilution with the H-enriched, He-depleted surface of the star which reduces its mean molecular weight, slowing the rate of thermohaline mixing. In the case that the amount of material accreted is very small, the barrier can be completely effective and mixing does not proceed to great ...
{ "cite_spans": [] }
10.1111/j.1365-2966.2008.13700.x
0807.1758
Thermohaline mixing and gravitational settling in carbon-enhanced metal-poor stars
[ "Richard J. Stancliffe", "Evert Glebbeek" ]
[ "astro-ph" ]
2,008
en
Physics
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afca2d2cebf958c55a5d87b63bc56d626e8d1d1a
subsection
16
21
The effect of gravitational settling
This is in contrast to the situation with thermohaline mixing alone, where the model which accretes 0.001\,M_\mathrm {\odot } (the dashed line in Figure REF ) has a [C/H] value about 0.6 dex lower than that of the model which accretes 0.01\,M_\mathrm {\odot } throughout its whole evolution.With the inclusion of gravita...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 1288, "openalex_id": "", "raw": "Richard O., Michaud G., Richer J., Turcotte S., Turck-Chièze S., VandenBerg D. A., 2002, ApJ, 568, 979", "source_ref_id": "51db7c433c3004229b37d1adcbbdf7b197bf7ba0", "start": 1176 }...
10.1111/j.1365-2966.2008.13700.x
0807.1758
Thermohaline mixing and gravitational settling in carbon-enhanced metal-poor stars
[ "Richard J. Stancliffe", "Evert Glebbeek" ]
[ "astro-ph" ]
2,008
en
Physics
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837bdb2c7267570ebc5d091e27b6ffc4a283b161
subsection
17
21
Discussion
As suggested by a means of suppressing the action of thermohaline mixing is necessary to prevent the destruction of lithium in some CEMPs. Lithium is a fragile element that is easily destroyed at temperatures of around 2\times 10^6 K which are found at around 0.01\,M_\mathrm {\odot } below the stellar surface of the lo...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 139, "openalex_id": "", "raw": "Thompson I. B., Ivans I. I., Bisterzo S., Sneden C., Gallino R., Vauclair S., Burley G. S., Shectman S. A., Preston G. W., 2008, ApJ, 677, 556", "source_ref_id": "0f9c5d3cb18f3f88651b74ebb8bbe...
10.1111/j.1365-2966.2008.13700.x
0807.1758
Thermohaline mixing and gravitational settling in carbon-enhanced metal-poor stars
[ "Richard J. Stancliffe", "Evert Glebbeek" ]
[ "astro-ph" ]
2,008
en
Physics
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5cc039620ab3bd20cecfd0a3f150de2c4aa7086b
subsection
18
21
Discussion
Stars are identified as turn-off objects if \log L/\mathrm {L}_\odot <0.7 (i.e. they have not yet undergone first dredge-up) and are displayed in the upper panels. Stars are defined as post-first dredge-up giants if \log L/\mathrm {L}_\odot >1.5 and are displayed in the lower panels. The total number of stars, \mathrm ...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 697, "openalex_id": "", "raw": "Aoki W., Beers T. C., Sivarani T., Marsteller B., Lee Y. S., Honda S., Norris J. E., Ryan S. G., Carollo D., 2008, ApJ, 678, 1351", "source_ref_id": "315c01f738d1a3b05c513c10cfc98e9d9bcd1548",...
10.1111/j.1365-2966.2008.13700.x
0807.1758
Thermohaline mixing and gravitational settling in carbon-enhanced metal-poor stars
[ "Richard J. Stancliffe", "Evert Glebbeek" ]
[ "astro-ph" ]
2,008
en
Physics
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49372f3ce64b2c529326e425d38fd525fc6b370b
subsection
19
21
Conclusions
We have modelled the accretion of AGB material on to low-mass stars in order to determine what chemical signatures may be observed in CEMP stars. We have examined three specific cases: canonical evolution including only convective mixing, the inclusion of thermohaline mixing and the inclusion of both thermohaline mixin...
{ "cite_spans": [] }
10.1111/j.1365-2966.2008.13700.x
0807.1758
Thermohaline mixing and gravitational settling in carbon-enhanced metal-poor stars
[ "Richard J. Stancliffe", "Evert Glebbeek" ]
[ "astro-ph" ]
2,008
en
Physics
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96d102f75d470682b404129f9bead7fb9dd235a7
subsection
20
21
Stellar yields
Here we present the final gross yields (i.e. the total mass of each isotope ejected) from each of the AGB models for all of the isotopes in the nucleosynthesis network. [Table: Final gross yields in stellar masses for all the isotopes in the nucleosynthesis network.]
{ "cite_spans": [] }
10.1111/j.1365-2966.2008.13700.x
0807.1758
Thermohaline mixing and gravitational settling in carbon-enhanced metal-poor stars
[ "Richard J. Stancliffe", "Evert Glebbeek" ]
[ "astro-ph" ]
2,008
en
Physics
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9e29f6842ef7c1eb8f972bdcf57ae68132b471af
abstract
0
17
Abstract
Prediction and prevention of musculo-skeletal injuries is an important aspect of preventive health science. Using as an example a human knee joint, this paper proposes a new coupled-loading-rate hypothesis, which states that a generic cause of any musculo-skeletal injury is a Euclidean jolt, or SE(3)-jolt, an impulsive...
{ "cite_spans": [] }
0807.1759
New Mechanics of Generic Musculo-Skeletal Injury
[ "Vladimir G. Ivancevic" ]
[ "q-bio.TO", "q-bio.QM" ]
2,008
en
Quantitative Biology
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3ebee83370189ef463d3ca9f6d3bcbcba30ab76d
subsection
1
17
Introduction
In this paper, we propose a new model of musculo-skeletal injury, using as an example the human knee joint. The knee joint comprises three articulations: (i) a tibio-femoral joint) between the medial and lateral condyles of the femur and tibia (see Figure REF ), (ii) patelo-femoral joint between the femur and patella, ...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 713, "openalex_id": "", "raw": "Whiting, W.C., Zernicke, R.F. Biomechanics of Musculoskeletal Injury. Human Kinetics, Champaign, IL, (1998).", "source_ref_id": "0b4b9c0deb0ae3601c9488b0a6c24a75c7eff1b1", "start": 595 ...
0807.1759
New Mechanics of Generic Musculo-Skeletal Injury
[ "Vladimir G. Ivancevic" ]
[ "q-bio.TO", "q-bio.QM" ]
2,008
en
Quantitative Biology
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390c9f07c0059aee366a5ae0f8358315c240d87f
subsection
2
17
Introduction
The number of sports–related injuries is increasing because of active participation of children in competitive sports . Children differ from adults in many areas, such as increased rate and ability of healing, higher strength of ligaments compared with growth plates, and continued growth. Growth around the knee can be ...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 119, "openalex_id": "", "raw": "Siow, H.M., Cameron, D.B., Ganley, T.J. Acute Knee Injuries in Skeletally Immature Athletes. Phys. Med. Rehab. 19(2), 319–345, (2008)", "source_ref_id": "46351aa7525bdb2cc1f6443d645ccef5855aa4...
0807.1759
New Mechanics of Generic Musculo-Skeletal Injury
[ "Vladimir G. Ivancevic" ]
[ "q-bio.TO", "q-bio.QM" ]
2,008
en
Quantitative Biology
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1eab9f27b827f7fc3a8ca4a60e558122491efc38
subsection
3
17
Introduction
These knee SE(3)–jolts do not belong to the standard Newton–Euler dynamics. The only way to monitor them would be to measure “in vivo" the rate of the combined (forces + torques)– rise in the knee joint (see Figure REF ).This paper proposes a new hypothesis for generic musculo-skeletal injury, called:Coupled–loading–ra...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 1528, "openalex_id": "", "raw": "Brand, R.A., Pedersen, D.R., Davy, D.T., Kotzar, G.M., Heiple, K.G., Goldberg, V.M. Comparison of hip force calculations and measurements in the same patient. J. Arthroplasty 9(1), 45–51, (1994)", ...
0807.1759
New Mechanics of Generic Musculo-Skeletal Injury
[ "Vladimir G. Ivancevic" ]
[ "q-bio.TO", "q-bio.QM" ]
2,008
en
Quantitative Biology
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32f4e2259e75cea281459fb275b74dca5635dd54
subsection
4
17
Introduction
The cause of knee disclinations is an angular 3–axial jolt, the time rate-of-change of a 3–axial torque (angular jolt = inertia moment \times angular jerk).This decoupled framework has been implemented in the Human Biodynamics Engine , a high-resolution neuro–musculo–skeletal dynamics simulator (with 270 DOFs, the sam...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 490, "openalex_id": "", "raw": "Ivancevic, V. Human Biodynamics Engine – Full Spine Simulator. Australian Defence Excellence in Science & Technology Award 2005 for Physiological Modelling, Adelaide, (2005).", "source_ref_id"...
0807.1759
New Mechanics of Generic Musculo-Skeletal Injury
[ "Vladimir G. Ivancevic" ]
[ "q-bio.TO", "q-bio.QM" ]
2,008
en
Quantitative Biology
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f0861eea7ed8d895d6028bf977aecc5f9c310beb
subsection
5
17
The
In the language of modern biodynamics , , the general knee motion is governed by the Euclidean SE(3)–group of 3D motions. Within the knee SE(3)–group we have both SE(3)–kinematics (consisting of the knee SE(3)–velocity and its two time derivatives: SE(3)–acceleration and SE(3)–jerk) and the knee SE(3)–dynamics (consist...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 121, "openalex_id": "", "raw": "Ivancevic, V. Symplectic Rotational Geometry in Human Biomechanics. SIAM Rev. 46(3), 455–474, (2004).", "source_ref_id": "a4c4d7fdaf18f03f00a9cdc7d6db09fbb8462972", "start": 0 }, ...
0807.1759
New Mechanics of Generic Musculo-Skeletal Injury
[ "Vladimir G. Ivancevic" ]
[ "q-bio.TO", "q-bio.QM" ]
2,008
en
Quantitative Biology
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27b4575866aa527538fa2a1c797ecb2f416f2ee2
subsection
6
17
The
With this respect, recall that the fundamental law of biomechanics – the so–called covariant force law , , , states:\text{Force co-vector field}=\text{Mass distribution}\times \text{Acceleration vector--field},which is formally written (using the Einstein summation convention, with indices labelling the three local Car...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 825, "openalex_id": "", "raw": "Ivancevic, V., Ivancevic, T., Human–Like Biomechanics. Springer, Dordrecht, (2006).", "source_ref_id": "c52f931a45465b790c0380ea51a39bbbf613d11c", "start": 0 }, { "arxiv_id...
0807.1759
New Mechanics of Generic Musculo-Skeletal Injury
[ "Vladimir G. Ivancevic" ]
[ "q-bio.TO", "q-bio.QM" ]
2,008
en
Quantitative Biology
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bce73a7072aa647df18db3df37f475f929236aef
subsection
7
17
Body
Briefly, the SE(3)-group of knee motions is defined as a semidirect (noncommutative) product of 3D knee rotations and 3D knee micro–translations,SE(3):=SO(3)\rhd \mathbb {R}^{3}.Its most important subgroups are the following:\begin{array}{cc} \mathbf {Subgroup} & \mathbf {Definition} \\ \hline \begin{array}{c} SO(3),\t...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 2311, "openalex_id": "", "raw": "Ivancevic, V. Symplectic Rotational Geometry in Human Biomechanics. SIAM Rev. 46(3), 455–474, (2004).", "source_ref_id": "a4c4d7fdaf18f03f00a9cdc7d6db09fbb8462972", "start": 178 }, ...
0807.1759
New Mechanics of Generic Musculo-Skeletal Injury
[ "Vladimir G. Ivancevic" ]
[ "q-bio.TO", "q-bio.QM" ]
2,008
en
Quantitative Biology
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91426a9d71d3296d99f1109dc4757102c4c90452
subsection
8
17
Local joint
To support our locally–coupled loading–rate hypothesis, we formulate the coupled Newton–Euler dynamics of the knee motions within the SE(3)- group. The forced Newton–Euler equations read in vector (boldface) form\text{Newton} &:&~\mathbf {\dot{p}}~\mathbf {\equiv M\dot{v}=F+p\times \omega }, \\ \text{Euler} &:&~\mathbf...
{ "cite_spans": [] }
0807.1759
New Mechanics of Generic Musculo-Skeletal Injury
[ "Vladimir G. Ivancevic" ]
[ "q-bio.TO", "q-bio.QM" ]
2,008
en
Quantitative Biology
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9a7b589b6093447fda74edc1ca307ba874f5406e
subsection
9
17
Local joint
However, for simplicity, in this paper we shall consider only the simple case of two separate diagonal 3\times 3 matrices (\mathbf {M,I}). defining the total moving segment mass–inertia distribution, with principal inertia moments given in Cartesian coordinates (x,y,z) by volume integralsI_{1}=\iiint \rho (z^{2}+y^{2})...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 4172, "openalex_id": "", "raw": "Lamb, H., Hydrodynamics (6th ed). Dover, New York, (1932).", "source_ref_id": "3ca65ca4266dbdca3d0b6ada7a492cebac370586", "start": 3278 }, { "arxiv_id": "", "doi": "...
0807.1759
New Mechanics of Generic Musculo-Skeletal Injury
[ "Vladimir G. Ivancevic" ]
[ "q-bio.TO", "q-bio.QM" ]
2,008
en
Quantitative Biology
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9d0a9803f1930066617407a73c8b0b11c6491d7d
subsection
10
17
Joint injury dynamics: the
The SE(3)-jolt, the actual cause of the knee injury (in the form of the plastic deformations), is defined as a coupled Newton+Euler jolt; in (co)vector form the SE(3)-jolt readsNote that the derivative of the cross–product of two vectors follows the standard calculus product–rule: \frac{d}{dt}(\mathbf {u\times v})=\mat...
{ "cite_spans": [] }
0807.1759
New Mechanics of Generic Musculo-Skeletal Injury
[ "Vladimir G. Ivancevic" ]
[ "q-bio.TO", "q-bio.QM" ]
2,008
en
Quantitative Biology
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9f009407ff158398c672a13e399f61bf26c5bba4
subsection
11
17
Joint injury dynamics: the
However, for the sake of simplicity and wider readability, we stick to the same overdot notation.~\dot{F}_{i} &=&\ddot{p}_{i}-\varepsilon _{ik}^{j}\dot{p}_{j}{\omega }^{k}-\varepsilon _{ik}^{j}p_{j}{\dot{\omega }}^{k}, \qquad (i,j,k=1,2,3) \\ ~\dot{T}_{{i}} &=&\ddot{\pi }_{i}~-\varepsilon _{ik}^{j}\dot{\pi }_{j}\omega ...
{ "cite_spans": [] }
0807.1759
New Mechanics of Generic Musculo-Skeletal Injury
[ "Vladimir G. Ivancevic" ]
[ "q-bio.TO", "q-bio.QM" ]
2,008
en
Quantitative Biology
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6bda48fdedf0e3a0280fa9b0a252c780d768bba2
subsection
12
17
Joint injury dynamics: the
\\ && \\ \text{Euler~jolt} &:&\left\lbrace \begin{array}{l} \dot{T}_{{1}}=\ddot{\pi }_{1}-(m_{{2}}-m_{{3}})\left( v_{{3}}\dot{v}_{{2}}+v_{{2}}\dot{v}_{{3}}\right) -(I_{{2}}-I_{{3}})\left( \omega _{{3}}\dot{\omega }_{{2}}+{\omega }_{{2}}{\dot{\omega }}_{{3}}\right) , \\ \dot{T}_{{2}}=\ddot{\pi }_{2}+(m_{{1}}-m_{{3}})\l...
{ "cite_spans": [] }
0807.1759
New Mechanics of Generic Musculo-Skeletal Injury
[ "Vladimir G. Ivancevic" ]
[ "q-bio.TO", "q-bio.QM" ]
2,008
en
Quantitative Biology
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e4ef0fa474701d4d0bbcc15fe5894cb307666168
subsection
13
17
Joint disclinations and dislocations caused by the
For mild knee injury (caused by internal loss of stability), the best injury predictor is considered to be the product of localized knee strain and strain rate, which is the standard isotropic viscoelastic continuum concept (see, e.g. ). To improve this standard concept, in this subsection, we consider the knee joint a...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 237, "openalex_id": "", "raw": "Halloran, J.P., Easley, S.K., Petrella, A.J., Rullkoetter, P. Comparison of deformable and elastic foundation finite element simulations for predicting knee replacement mechanics. J. Biomech. Eng. 1...
0807.1759
New Mechanics of Generic Musculo-Skeletal Injury
[ "Vladimir G. Ivancevic" ]
[ "q-bio.TO", "q-bio.QM" ]
2,008
en
Quantitative Biology
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d572e893337d58605600224d258a2fd5519b12d5
subsection
14
17
Joint disclinations and dislocations caused by the
According to Edelen , , these four SE(3)-based differential forms satisfy the following set of continuity equations:&&\mathbf {\dot{\alpha }}=\mathbf {-dJ-S,} \\ &&\mathbf {\dot{Q}}=\mathbf {-dS,} \\ &&\mathbf {d\alpha }=\mathbf {Q,} \\ &&\mathbf {dQ}=\mathbf {0,}\qquadwhere \mathbf {d} denotes the exterior derivative....
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 323, "openalex_id": "", "raw": "Edelen, D.G.B., A four-dimensional formulation of defect dynamics and some of its consequences, Int. J. Engng. Sci. 18, 1095, (1980).", "source_ref_id": "02b1e14d0b72805f76a604d101e60841b4f26e...
0807.1759
New Mechanics of Generic Musculo-Skeletal Injury
[ "Vladimir G. Ivancevic" ]
[ "q-bio.TO", "q-bio.QM" ]
2,008
en
Quantitative Biology
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8435a25d246a6d1ebb3f8a4de98b0144927e978c
subsection
15
17
Joint disclinations and dislocations caused by the
The 3–form equation () states that the time derivative \mathbf {\dot{Q}=}\frac{1}{3!}\dot{Q}_{ijk}\,dx^{i}\wedge dx^{j}\wedge dx^{k} of the disclination density \mathbf {Q} is the (negative) divergence of the disclination current \mathbf {S}. This time derivative is caused by the rotational part of the SE(3) jolt. The...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 680, "openalex_id": "", "raw": "Ivancevic, V., Ivancevic, T., Geometrical Dynamics of Complex systems: A Unified Modelling Approach to Physics, Control, Biomechanics, Neurodynamics and Psycho-Socio-Economical Dynamics. Springer, D...
0807.1759
New Mechanics of Generic Musculo-Skeletal Injury
[ "Vladimir G. Ivancevic" ]
[ "q-bio.TO", "q-bio.QM" ]
2,008
en
Quantitative Biology
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060d2f6734913f4a02c99b9dfb6ba1aa5d46af20
subsection
16
17
Conclusion
Based on the previously developed covariant force law , , its recent application to traumatic brain injury , and using as an example a human knee joint, in this paper we have formulated a new coupled loading–rate hypothesis for the generic musculo-skeletal injury. This new injury hypothesis states that generic cause of...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 264, "openalex_id": "", "raw": "Ivancevic, V., Ivancevic, T., Natural Biodynamics. World Scientific, Singapore, (2006).", "source_ref_id": "ff72e723e212bb5833387275fc17f798f3c6fa26", "start": 0 }, { "arxi...
0807.1759
New Mechanics of Generic Musculo-Skeletal Injury
[ "Vladimir G. Ivancevic" ]
[ "q-bio.TO", "q-bio.QM" ]
2,008
en
Quantitative Biology
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b74b5f503c68ef81d0ed57df25fb88255ca8682b
abstract
0
6
Abstract
In this paper, we investigate the long-standing gap of quantum key rate between the Weak Coherent Pulse (WCP) and Heralded Single Photon Sources(HSPS) implementation of quantum cryptographical protocol. We prove that, by utilizing the Heralded Pair Coherent State (HPCS) photon sources, such a gap can be actually filled...
{ "cite_spans": [] }
0807.1760
Closing the gap of secure quantum key rate with the Heralded Pair-Coherent States
[ "ShengLi Zhang", "XuBo Zou", "ChenHui Jin", "GuangCan Guo" ]
[ "quant-ph" ]
2,008
en
Physics
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289e7c7a31fa607151593b27c590fd84a641538b
subsection
1
6
Body
10Closing the gap of secure quantum key rate with the Heralded Pair-Coherent States ShengLi Zhang^{1,2}, XuBo Zou^{1}, ChenHui Jin^{2} and GuangCan Guo^{1} 1 Key Laboratory of Quantum Information, University of Science and Technology of China (CAS), Hefei 230026, China.2 Zheng Zhou Information and Technology Institute,...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 1020, "openalex_id": "", "raw": "C. H. Bennett and G. Brassard, in Proceedings of the IEEE International Conference on Computers, Systems, and Signal Processing, Bangalore, India (IEEE, New York, 1984), p. 175.", "source_ref...
0807.1760
Closing the gap of secure quantum key rate with the Heralded Pair-Coherent States
[ "ShengLi Zhang", "XuBo Zou", "ChenHui Jin", "GuangCan Guo" ]
[ "quant-ph" ]
2,008
en
Physics
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1274b90014f93f1814ff45f88316f05fcef0d4f6
subsection
2
6
Body
Put simply, to optimize the final performance, one should resort to WCP sources within the threshold distance but resort to HSPS sources if the distance is threshold-beyond.In commercialization of QKD, it is important to find a universal photon-emitting sources which is the optimal in secure key generating rate for eac...
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0807.1760
Closing the gap of secure quantum key rate with the Heralded Pair-Coherent States
[ "ShengLi Zhang", "XuBo Zou", "ChenHui Jin", "GuangCan Guo" ]
[ "quant-ph" ]
2,008
en
Physics
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d0933b45f2f3be8655cc851b0b876f21b1f1d075
subsection
3
6
Body
If the signal state and the decoy state have the same wavelength, timing, and many other physical characters, no eavesdropper will be able to distinguish a decoy state from a signal state successfully. Thus the condition probability that Bob's detector clicks when a n-photon pulse is emitted from Alice will be the same...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 1277, "openalex_id": "", "raw": "G. S. Agarwal, Phys. Rev. Lett. 57, 827(1986).", "source_ref_id": "33444bed2f9bfedf97bd6a7818c902d583ce9726", "start": 1131 }, { "arxiv_id": "", "doi": "", "en...
0807.1760
Closing the gap of secure quantum key rate with the Heralded Pair-Coherent States
[ "ShengLi Zhang", "XuBo Zou", "ChenHui Jin", "GuangCan Guo" ]
[ "quant-ph" ]
2,008
en
Physics
[ -0.01789974234998226, -0.02057020552456379, -0.048922907561063766, 0.024675091728568077, 0.017045192420482635, 0.004795391112565994, 0.017365649342536926, 0.013428620994091034, 0.03479233756661415, 0.06787557899951935, -0.0275591928511858, 0.008179251104593277, 0.02050916664302349, 0.02057...
37d12b183db225a21c6ca89f66e5cebf94358841
subsection
4
6
Body
In fact, it will be shown that only one signal state \mu and two decoy state \nu _1,\nu _2(1>\mu >\nu _1>\nu _2 and \nu _1^2+\nu _2^2\le \mu ^2) will be enough to give an estimation. First of all, it is sufficient to use only \nu _1,\nu _2 and obtain the estimation of Y_1 and e_1. Plugging Eq. (REF ) into Eq.(REF ), on...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 1005, "openalex_id": "", "raw": "C. Gobby, Z. L. Yuan and A. J. Shields , Appl. Phys. Lett. 84, 3762(2004);", "source_ref_id": "9ad98a3ea43c5408ce02a55790e40478bd64682e", "start": 523 }, { "arxiv_id": "",...
0807.1760
Closing the gap of secure quantum key rate with the Heralded Pair-Coherent States
[ "ShengLi Zhang", "XuBo Zou", "ChenHui Jin", "GuangCan Guo" ]
[ "quant-ph" ]
2,008
en
Physics
[ -0.010671486146748066, 0.021159902215003967, -0.04540149122476578, -0.033074744045734406, -0.007475379854440689, -0.0019794499967247248, -0.01650686003267765, 0.029489610344171524, 0.017986679449677467, 0.04775089770555496, -0.050435930490493774, -0.0022159162908792496, 0.010587578639388084,...
2abe98fa31b43e7435c1a9979c0b367a4996aa65
subsection
5
6
Body
Similarly, for SARG protocol, we obtain Q_{\mu ,SARG}=\left(\frac{e_{det}}{2}+\frac{1}{4}\right)\xi -\left(\frac{e_{det}}{2}+\frac{1}{4}-\frac{p_{dark}}{2}\right)\zeta , EQ_{\mu ,SARG}=\frac{e_{det}}{2}\xi -\left(\frac{e_{det}}{2}-\frac{p_{dark}}{4}\right)\zeta , E_{\mu ,SARG}=EQ_{\mu ,SARG}/Q_{\mu ,SARG}^, where \xi =...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 772, "openalex_id": "", "raw": "Tomoyuki Horikiri and Takayoshi Kobayashi, Phys. Rev. A. 73, 032331 (2006).", "source_ref_id": "fee7407edf8de146249fb8bc6590964b139e0cf0", "start": 672 }, { "arxiv_id": "",...
0807.1760
Closing the gap of secure quantum key rate with the Heralded Pair-Coherent States
[ "ShengLi Zhang", "XuBo Zou", "ChenHui Jin", "GuangCan Guo" ]
[ "quant-ph" ]
2,008
en
Physics
[ -0.0125869270414114, -0.016111265867948532, -0.07024268060922623, -0.027782781049609184, 0.018872762098908424, 0.011846967972815037, 0.011587601155042648, -0.01958983577787876, -0.004763961303979158, 0.019696634262800217, -0.02206145040690899, 0.024838201701641083, 0.00440542446449399, 0.0...
45771f569b1ab07bc9c402aca24c63356f46e8cc
abstract
0
19
Abstract
We study the conditions for collisions between planetesimals to be accretional or disruptive in turbulent disks, through analytical arguments based on fluid dynamical simulations and orbital integrations. In turbulent disks, the velocity dispersion of planetesimals is pumped up by random gravitational perturbations fro...
{ "cite_spans": [] }
10.1086/591903
0807.1761
Accretion and destruction of planetesimals in turbulent disks
[ "Shigeru Ida", "Tristan Guillot", "Alessandro Morbidelli" ]
[ "astro-ph" ]
2,008
en
Physics
[ 0.006494229659438133, -0.006936844438314438, -0.02472538687288761, -0.000603826018050313, -0.028083154931664467, -0.007581688929349184, -0.03965219482779503, -0.0020528174936771393, 0.021688131615519524, 0.024786436930298805, -0.007116179913282394, 0.004296417348086834, -0.010462502017617226...
abee99ae6a851e1a9a9f377c3d89aa2f38b77016
subsection
1
19
Introduction
It is often considered that the evolution of protoplanetary disks and the consequent accretion of gas by the central protostar are driven by turbulent viscosity due to a Magneto-Rotational-Instability (MRI) . and carried out fluid dynamical simulations of MRI and found that the random torques due to the turbulent densi...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 576, "openalex_id": "", "raw": "Balbus, S. A., & Hawley, J. F. 1991, , 376, 214", "source_ref_id": "7f66374ea569bc4c69f73ce26d1b25e72e69882e", "start": 0 }, { "arxiv_id": "", "doi": "", "end":...
10.1086/591903
0807.1761
Accretion and destruction of planetesimals in turbulent disks
[ "Shigeru Ida", "Tristan Guillot", "Alessandro Morbidelli" ]
[ "astro-ph" ]
2,008
en
Physics
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85e5078d4f29ce844bbac6cac4334216cdac1780
subsection
2
19
Accretion and destruction conditions
We summarize the accretion and destruction conditions below. From energy conservation, the collision velocity (v_{\rm coll}) between two planetesimals (labeled 1 and 2) satisfiesE = \frac{1}{2}v_{\rm coll}^2 - \frac{G(M_1 + M_2)}{R_1 + R_2} = \frac{1}{2}v_{\rm rel}^2,where M_j and R_j are the mass and physical radius o...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 702, "openalex_id": "", "raw": "Ida, S. & Nakazawa, K. 1989, å, 224, 303", "source_ref_id": "40b2ac4e9037bde8412f404d216036c074dd75ac", "start": 428 }, { "arxiv_id": "", "doi": "", "end": 702,...
10.1086/591903
0807.1761
Accretion and destruction of planetesimals in turbulent disks
[ "Shigeru Ida", "Tristan Guillot", "Alessandro Morbidelli" ]
[ "astro-ph" ]
2,008
en
Physics
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9393df3b508ca69e9fe29520caa8046bb61f4cdf
subsection
3
19
Accretion and destruction conditions
The physical radius R is given byR=7.8 \times 10^8 (M/M_{\oplus })^{1/3} (\rho _{\rm p}/3{\rm gcm}^{-3})^{-1/3} {\rm cm}.A collision results in destruction if the collision velocity is such that the specific kinetic energy of a collision (v_{\rm col}^2/2) exceedsQ_{\rm D} \simeq \left[ Q_0 \left(\frac{R}{1{\rm cm}}\rig...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 529, "openalex_id": "", "raw": "Benz, W. & Asphaug, E. 1999, Icarus, 142, 5", "source_ref_id": "02348101b1fcdd3cf85ebfe9a2fc9d53d39bc46d", "start": 121 }, { "arxiv_id": "", "doi": "", "end": 6...
10.1086/591903
0807.1761
Accretion and destruction of planetesimals in turbulent disks
[ "Shigeru Ida", "Tristan Guillot", "Alessandro Morbidelli" ]
[ "astro-ph" ]
2,008
en
Physics
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2c60b35d2223015839de17a425c616a8f7d57dd6
subsection
4
19
Equilibrium eccentricities
We first derive the equilibrium eccentricities of planetesimals at which the excitation by the MRI turbulence is balanced by damping due to drag and/or collisions. Comparing the estimated eccentricities with e_{\rm acc} and e_{\rm dis}, we then evaluate the outcome of collisions between planetesimals as a function of p...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 995, "openalex_id": "", "raw": "Hayashi, C., 1981, Prog. Theor. Phys. Suppl, 70, 35", "source_ref_id": "53b3432946256025557fd8a8efbd3c3dd246346e", "start": 895 }, { "arxiv_id": "", "doi": "", ...
10.1086/591903
0807.1761
Accretion and destruction of planetesimals in turbulent disks
[ "Shigeru Ida", "Tristan Guillot", "Alessandro Morbidelli" ]
[ "astro-ph" ]
2,008
en
Physics
[ 0.010407760739326477, -0.0009404373122379184, -0.025729449465870857, -0.008874066174030304, -0.011269987560808659, -0.007424304727464914, -0.0109418835490942, -0.01928945630788803, 0.013498041778802872, 0.04492734372615814, -0.031116457656025887, 0.038151614367961884, -0.041722606867551804, ...
f4665f2bf1eb5a5be6d20dd3892c6c5fb865e429
subsection
5
19
Excitation
The orbital eccentricities of planetesimals are pumped up both by the random gravitational perturbations from density fluctuations of disk gas, as well as by mutual gravitational scattering among planetesimals. Assuming planetesimals have equal masses, their orbital eccentricities should be excited to at most \sim e_{\...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 354, "openalex_id": "", "raw": "Safronov, V. 1969, Evolution of thr Protoplanetary Cloud and Formation of the Earth and Planets (Moscow: Nauka Press)", "source_ref_id": "29e88038abc30904ed79191ec5cb5fd4ad6d07a1", "star...
10.1086/591903
0807.1761
Accretion and destruction of planetesimals in turbulent disks
[ "Shigeru Ida", "Tristan Guillot", "Alessandro Morbidelli" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.02933531627058983, -0.0006439040880650282, -0.027915865182876587, -0.031960539519786835, -0.036539413034915924, -0.06508105993270874, 0.020665982738137245, -0.01273689977824688, 0.030892133712768555, 0.020009677857160568, -0.041820377111434937, 0.04224773868918419, -0.023062260821461678, ...
f0cefa6cea296729a3205997b4d311264c9fd4b4
subsection
6
19
Excitation
Interestingly, with a quite different approach, derived a similar formula for \Delta a/a with the same dependences on r, \Sigma _g and t. If e \simeq \Delta a/a, their formula is consistent with ours. They suggested that \gamma \sim \alpha or \alpha ^{1/2} h/a where h is disk scale height and \alpha is the parameter f...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 201, "openalex_id": "", "raw": "Johnson, E. T., Goodman, J. & Menou, K. 2006, , 647, 1413", "source_ref_id": "8208623fcafc4a25190764df8a8b36334a29db54", "start": 0 }, { "arxiv_id": "", "doi": "", ...
10.1086/591903
0807.1761
Accretion and destruction of planetesimals in turbulent disks
[ "Shigeru Ida", "Tristan Guillot", "Alessandro Morbidelli" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.03004693053662777, 0.001790188136510551, -0.022264333441853523, -0.0073400577530264854, 0.01902921311557293, -0.01809835433959961, 0.021959133446216583, 0.0069394828751683235, 0.032290149480104446, 0.04016430675983429, -0.02238641306757927, 0.043094225227832794, -0.015137915499508381, -...
16b6ae602cda5986b0ce0eafea0e591e02cec707
subsection
7
19
Damping
The eccentricity damping processes are i) tidal interaction with disk gas, ii) aerodynamical gas drag, and iii) inelastic collisions. The tidal damping timescale (i) is derived by as\tau _{\rm tidal} \simeq 1.3 \left(\frac{M}{M_{\odot }}\right)^{-1} \left(\frac{\Sigma _{g} r^2}{M_{\odot }}\right)^{-1} \left(\frac{c_s}{...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 486, "openalex_id": "", "raw": "Tanaka, H., & Ward, W. R., 2004, , 602, 388", "source_ref_id": "7d55de26fb0c4f0a8849e9eb5c76235f430caa65", "start": 134 }, { "arxiv_id": "", "doi": "", "end": 8...
10.1086/591903
0807.1761
Accretion and destruction of planetesimals in turbulent disks
[ "Shigeru Ida", "Tristan Guillot", "Alessandro Morbidelli" ]
[ "astro-ph" ]
2,008
en
Physics
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27412f5dbc8455d29349197f4edc76de5e5ed928
subsection
8
19
Equilibrium eccentricity
We now equate eq. (REF ) with eqs. (REF ), (REF ), and (REF ), respectively, to obtain an equilibrium eccentricity for each damping process. For simplicity and to a good approximation, the actual equilibrium eccentricity can be approximated as the minimum of the three equilibrium eccentricities. From eqs. (REF ) and (R...
{ "cite_spans": [] }
10.1086/591903
0807.1761
Accretion and destruction of planetesimals in turbulent disks
[ "Shigeru Ida", "Tristan Guillot", "Alessandro Morbidelli" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.008484604768455029, -0.026583058759570122, -0.015298229642212391, -0.043704867362976074, -0.02636941708624363, -0.04401006922125816, 0.010170843452215195, -0.01474886666983366, 0.01777799241244793, 0.027361322194337845, -0.019075099378824234, 0.014359734952449799, -0.010704945772886276, ...
5542327f21a607695020e80e803cfa3652d938a6
subsection
9
19
Equilibrium eccentricity
(REF ),\begin{array}{ll} e_{\rm coll} & \simeq 3.2 \times 10^2 f_g (f_d \eta _{\rm ice})^{-1/2} \gamma \left(\frac{M}{M_{\oplus }}\right)^{1/6} \left(\frac{\rho _{\rm p}}{3{\rm gcm}^{-3}}\right)^{1/3} \left(\frac{r}{1{\rm AU}}\right)^{5/4} \\ & \simeq 3.6 f_g (f_d \eta _{\rm ice})^{-1/2} \gamma \left(\frac{R}{1{\rm km}...
{ "cite_spans": [] }
10.1086/591903
0807.1761
Accretion and destruction of planetesimals in turbulent disks
[ "Shigeru Ida", "Tristan Guillot", "Alessandro Morbidelli" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.01973555237054825, -0.004517960827797651, -0.03394576162099838, -0.04337853193283081, -0.008112487383186817, -0.05653556436300278, -0.010310414247214794, 0.008875655941665173, -0.03324364498257637, 0.017583414912223816, -0.02947358973324299, 0.012103861197829247, -0.04579014331102371, 0...
6b338dddb78e9993b83985147de99267299a6a97
subsection
10
19
Equilibrium eccentricity
\end{array}The accretion of planetesimals is possible for M > M_{\rm acc} (R > R_{\rm acc}). In the top panel of fig. REF (\gamma = 10^{-3} and f_g = 1), planetesimal accretion proceeds in a range of R's in which the solid line (e_{\rm eq}) is located below the dashed line (e_{\rm acc}), that is, only if a body is lar...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 484, "openalex_id": "", "raw": "Johansen, A., Oishi, J. S., Low, M. M., Klahr, H., Thomas, H. & Youdin, A. 2007. Nature, 448, 1022", "source_ref_id": "fd89ca012e4718a17237d8f328b751d716644103", "start": 336 } ] }
10.1086/591903
0807.1761
Accretion and destruction of planetesimals in turbulent disks
[ "Shigeru Ida", "Tristan Guillot", "Alessandro Morbidelli" ]
[ "astro-ph" ]
2,008
en
Physics
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