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054950a8d17dab8f997c969f81c3525b5c5d3312
subsection
11
19
Equilibrium eccentricity
The body is not disrupted if \sqrt{2Q_{\rm D}}/v_{\rm K} > e_{\rm drag}, which is equivalent to\begin{array}{l} M M_{\rm mat} \simeq 0.8 \times 10^{-17} f_g^{-1.9} \left(\frac{\gamma }{10^{-3}}\right)^{-3.7} \left(\frac{\rho _{\rm p}}{3{\rm gcm}^{-3}}\right)^{-0.9} \left(\frac{r}{1{\rm AU}}\right)^{2.8} M_{\oplus }, \...
{ "cite_spans": [] }
10.1086/591903
0807.1761
Accretion and destruction of planetesimals in turbulent disks
[ "Shigeru Ida", "Tristan Guillot", "Alessandro Morbidelli" ]
[ "astro-ph" ]
2,008
en
Physics
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07dcd7b9c98c9f4498bcabede045d76ff232ff58
subsection
12
19
Accretion/destruction of planetesimals in an evolving disk
We now put these various critical physical radii in the context of the evolution of the protoplanetary disk. In order to investigate the effect of departures from power-law relations of the surface density and temperature profiles in real disks, we also present in this section results obtained from a 1D disk model that...
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10.1086/591903
0807.1761
Accretion and destruction of planetesimals in turbulent disks
[ "Shigeru Ida", "Tristan Guillot", "Alessandro Morbidelli" ]
[ "astro-ph" ]
2,008
en
Physics
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adbc2696118b37262993b1d64dbb9ed18400a2f8
subsection
13
19
Accretion/destruction of planetesimals in an evolving disk
Although the original MMSN model by used r_{\rm edge} = 35 AU, we here adopt r_{\rm edge} = 1000 AU (for comparison, our fiducial alpha disk model with T_{\rm atm}=100 K extends up to a maximum of 350 AU).These are found to be in excellent agreement with the analytical expressions derived in the previous section, with ...
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10.1086/591903
0807.1761
Accretion and destruction of planetesimals in turbulent disks
[ "Shigeru Ida", "Tristan Guillot", "Alessandro Morbidelli" ]
[ "astro-ph" ]
2,008
en
Physics
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03c7466d3ddcb280f9050a6afe1c99b130c98a1c
subsection
14
19
Accretion/destruction of planetesimals in an evolving disk
The disk mass necessary for Jupiter to grow to its present mass if it captures 70% of the mass flux at its orbital distance. For our model, M_{\rm disk}=0.0054\,\rm M_\odot (about 5 times the mass of Jupiter) and an age of 2.85 Myrs.Table REF provides the values of the physical radii that define the accretive regime an...
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10.1086/591903
0807.1761
Accretion and destruction of planetesimals in turbulent disks
[ "Shigeru Ida", "Tristan Guillot", "Alessandro Morbidelli" ]
[ "astro-ph" ]
2,008
en
Physics
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bfd75edf6a6123322faf32995846338f8382b81f
subsection
15
19
Conclusion and discussion
We have investigated the critical physical radii for collisions between planetesimals to be accretional (R > R_{\rm acc}) or disruptive (R < R_{\rm dis}) in turbulent disks, as functions of turbulent strength (\gamma \sim O(\Delta \rho /\rho )), disk gas surface density, and orbital radius. The results presented here h...
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10.1086/591903
0807.1761
Accretion and destruction of planetesimals in turbulent disks
[ "Shigeru Ida", "Tristan Guillot", "Alessandro Morbidelli" ]
[ "astro-ph" ]
2,008
en
Physics
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336af8532373fdbabd27d2615600f342f38cbe30
subsection
16
19
Conclusion and discussion
The possibility to delay planet formation while keeping non-migrating km-size planetesimals is noteworthy because it would help planetary systems resisting to type-I migration: they would grow in a gas disk that is less dense, and for which migration timescales may be considerably increased. , , and showed that type-I...
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10.1086/591903
0807.1761
Accretion and destruction of planetesimals in turbulent disks
[ "Shigeru Ida", "Tristan Guillot", "Alessandro Morbidelli" ]
[ "astro-ph" ]
2,008
en
Physics
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ce05cb39914e2ca721fab6ebcaba9c0e3096f6df
subsection
17
19
Conclusion and discussion
This is in qualitative agreement with observations that do not indicate a significant depletion of micron-sized grains with time, contrary to what would be predicted in the absence of turbulence , .In conclusion, the existence of MRI turbulence may be a threat to planetesimal accretion. Given the uncertainties related ...
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10.1086/591903
0807.1761
Accretion and destruction of planetesimals in turbulent disks
[ "Shigeru Ida", "Tristan Guillot", "Alessandro Morbidelli" ]
[ "astro-ph" ]
2,008
en
Physics
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f2b16567b7ef282558ac90297f54c7d1197c6fda
subsection
18
19
Appendix
Here we derive the r-dependence in eq. (REF ). If the equation of motion is scaled by a reference radius r_1 and T_{\rm K1} where T_{\rm K1} is a Keplerian period at r_1, the only remaining non-dimensional parameter in the equations is\gamma \Gamma (r_1) = \gamma \frac{64 \Sigma _g r^2}{\pi M_{\odot }}|_{r_1}(see eqs. ...
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10.1086/591903
0807.1761
Accretion and destruction of planetesimals in turbulent disks
[ "Shigeru Ida", "Tristan Guillot", "Alessandro Morbidelli" ]
[ "astro-ph" ]
2,008
en
Physics
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b38e48ed967f63f7faa04ff624e43d0153697440
abstract
0
28
Abstract
There is an intrinsic relationship between the molecular evolution in primordial period and the properties of genomes and proteomes of contemporary species. The genomic data may help us understand the driving force of evolution of life at molecular level. In absence of evidence, numerous problems in molecular evolution...
{ "cite_spans": [] }
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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b68a5c52cfd17f75be31ea7f1e9b91c5596b5c88
subsection
1
28
Introduction
The driving force of evolution of life is a core problem in the theory of evolution. A qualified mechanism on driving force should explain the evolutionary trends for both molecular evolution and macroevolution of life. The driving force must be effective persistently from the primordial period through present days. An...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 769, "openalex_id": "", "raw": "Knight R. D., and Landweber L. F. The early evolution of the genetic code. Cell 101, 569-572 (2000).", "source_ref_id": "d61d983c2dcf8311d975aceeb97984a7c65b7a03", "start": 690 }, ...
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
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Quantitative Biology
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4b99df5365330f10c8d1c57961af25914e1c94c3
subsection
2
28
Choosing orders of species properly to observe variation trends of amino acid frequencies
The amino acid frequencies in species vary slightly, which was routinely assumed to be constant . Unfortunately, this is a misleading assumption and resulted in ignorance of studying the mechanism of variation of amino acid frequencies in the past. Actually, it is easy to observe the variation trends of amino acid freq...
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10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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94602473f54bc43099b6a99ed420d8edba215ce4
subsection
3
28
Choosing orders of species properly to observe variation trends of amino acid frequencies
Similarly, we obtain R_{HQW/GV} order and R_{1/G} order, whereR_{HQW/GV}(\xi )=\frac{\frac{1}{3}\sum _{a=H, Q, W}f(a,\xi )}{\frac{1}{2}\sum _{a=G, V}f(a,\xi )},andR_{1/G}(\xi )=\frac{1}{f(G,\xi )}.R_{10/10} order, R_{HQW/GV} order and R_{1/G} order are some cases of Late-early Ratio Orders.If we choose orders of specie...
{ "cite_spans": [] }
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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bbf09fa7d654ef9991ea52796ba6b64115b37959
subsection
4
28
General variation trends of amino acid frequencies
When sorting the species properly, we can obtain a set of variation trends for the 20 amino acids. The variation trends are generally common for different proper orders of species, and the results of variation trends are also common either based on the data of species in PEP or based on the data of species in NCBI. So ...
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10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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57ac5ce4013df461b0b3d3b537273f33aaf60331
subsection
5
28
Fine structures of the variation of amino acid frequencies
Furthermore, we can observe fine structures and superfine structures of the variation of amino acid frequencies because f(a(i),\xi ) do not vary with \xi linearly in general. We choose R_{10/10} order in studying the variation of amino acid frequencies, which is an intrinsic order related to the molecular evolution. Ro...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 810, "openalex_id": "", "raw": "Savitzky, A. and Golay, M. J. E. Smoothing and differentiation of data. Anal. Chem. 36, 1627-1639 (1964).", "source_ref_id": "e93b905de3ec8686c69e25eaa4df73d10a7c2768", "start": 668 ...
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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06fa70210b55581bbfd7a11d42cc506a7cc29f32
subsection
6
28
Fine structures of the variation of amino acid frequencies
As a result, we can observe more steep variation trends in the sections with small and big series numbers in the fine structures.In the simulation in Fig. S4, we choose a linear relationship between parameter t and series number of species N_s, i.e., t=t_1(N_s), without consideration of the variation of sample density....
{ "cite_spans": [] }
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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931de41bab614b7fd029ad7f55084ea23f255997
subsection
7
28
Superfine structures of the variation of amino acid frequencies
We prescribe the superfine structures as the fluctuations in the profiles of the variations of amino acid frequencies. The smoothed lines corresponding to superfine structures can be obtained by certain smaller spans according to Savitzky-Golay method (red lines in Fig. 2). We also sorted the species by R_{10/10} order...
{ "cite_spans": [] }
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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0d91fd09837e8574de24bde247a3d544b0f58498
subsection
8
28
Variation trends of amino acid frequencies for three domains
It is significant to compare the variation trends of amino acid frequencies for three domains (eubacteria, archaebacteria, and eukaryotes). The evolution trends of each of the 20 amino acid frequencies are the same without exception for three domains (Fig. 4). But there are differences of the ranges of amino acid frequ...
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10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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7011a0e0d1020807371fb111ca040d51e029037c
subsection
9
28
Experimental observations
It is well known that base compositions in genomes vary greatly, which are often referred as GC pressure or GA pressure in molecular evolution. There are delicate structures in the variation of genomic base compositions of contemporary species, which are discussed in details in Ref. .The precise correlations between ge...
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10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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0456fd7a4cbc4711adb67945b7090733d81f9d1e
subsection
10
28
Theoretical Results
The mechanism of the evolution of genomic base compositions can also be explained by the same model based on genetic code multiplicity and codon chronology. The simulations of correlations of genomic base compositions and codon position base compositions (Fig. 6e-6h) agree with the experimental observations respectivel...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 783, "openalex_id": "", "raw": "Muto A., and Osawa S. The guanine and cytosine content of genomic DNA and bacterial evolution. Proc. Natl. Acad. Sci. USA 84, 166-169 (1987).", "source_ref_id": "bb33a1231206ce0c1aebc4c4b5521e...
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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10ecdcf09235cbd0f55c2ad95fa1420caa951154
subsection
11
28
Relationships between amino acid frequencies and genomic base compositions
There is explicit relationship between amino acid frequencies and genomic base compositions. We observe that the genomic GC content decreases linearly with the ratio R_{10/10} (Fig. 7a) . Similar results are also valid for other Late-early Ratio Orders. So the genomic GC content and the amino acid frequencies are not i...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 187, "openalex_id": "", "raw": "Sueoka N. Correlation between base composition of deoxyribonucleic acid and amino acid composition of protein. Proc. Natl. Acad. Sci. USA 47, 1141-1149 (1961).", "source_ref_id": "b2bd4efc5d19...
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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f8e4a8f07f061e3a313ba4b59a2ccf8aca84cdfd
subsection
12
28
Relationships between amino acid frequencies and average protein lengths
There is also correlation between the average protein length \bar{l} and the ratio R_{HQW/GV} (Fig. 8). The distribution of all species forms a bowed line in the \bar{l} - R_{HQW/GV} plane, and the closely related species cluster together in the \bar{l} - R_{HQW/GV} plane (Fig. 8). Roughly speaking, the average protein...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 1780, "openalex_id": "", "raw": "Hornos, J. E. M., and Hornos, Y. M. M., Algebraic Model for the Evolution of the Genetic Code. Phy. Rev. Lett. 71, 4401-4404 (1993).", "source_ref_id": "418d11dbc9b5f02ded8f987b3221ae1f287ee7...
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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7f9da77682367ad11b90e0f571273a9a1cc01bb0
subsection
13
28
Relationships between amino acid frequencies and genomic base compositions
According to the simulation, we found that the genetic code multiplicity can influence both amino acid frequencies and genomic GC content. So the evolutionary pressure in the overall molecular evolution originated in the genetic code evolution. The evolutionary pressure influences the amino acid frequencies, genomic ba...
{ "cite_spans": [] }
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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283e142314a2df3e42ad52118fd756745d27ddb6
subsection
14
28
Timing the mechanism of the variation of amino acid frequencies
The estimation of the time when the variation of amino acid frequencies appeared firstly will help us seek the mechanism that determines the variation of amino acid frequencies of contemporary species. We can explain that the variation of amino acid frequencies formed before the stage when three domains began to branch...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 562, "openalex_id": "", "raw": "Jordan, I. K. et al. A univeral trend of amino acid gain and loss in protein evolution. Nature 433, 633-638, (2005).", "source_ref_id": "4cf8a18240857dc1419351307d9209f5edcab9e8", "start...
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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2a91831245f5a0de1631dd6309dccd35951eaa2c
subsection
15
28
Initial driving force for molecular evolution
The variations of amino acid frequencies and genomic base compositions can be explained in a unified theoretical framework based on genetic code evolution. All the theoretical results in section 2-4 are based on one model, whose core is the genetic code multiplicity and chronology. The simulations by the model agree wi...
{ "cite_spans": [] }
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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0707d8423193d233d3448650096898229300aa6f
subsection
16
28
Cracking the genetic code evolution
If our conjecture is reasonable, we found a new method to crack the genetic code evolution in primordial time by studying the variation of amino acid frequencies and genomic base compositions of contemporary species. Especially, there are some detailed disagreements between theoretical results and experimental observat...
{ "cite_spans": [] }
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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cff524f55f192a5f0612f8754d9355d14ebd321e
subsection
17
28
Outline of the model
We proposed a model based on the evolution of genetic code to explain the variations of amino acid frequencies and base compositions in species. The model mainly consists of three parts: (i) generating void protein sequences by formal language; (ii) generating protein sequences based on genetic code multiplicity; and (...
{ "cite_spans": [] }
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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e9376b0e6f51de043775b714e2926297e1f0f96c
subsection
18
28
Generation of void protein sequences by formal language
There are two steps in generation of protein sequences in the model: (1) generating void protein sequences according to tree adjoining grammars in Fig. S12 ; (2) the leaf \pi in the tree adjoining grammar will be substituted by amino acids based on the genetic code multiplicity in Ref. (Fig. S13 and Tab. 3), where the ...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 307, "openalex_id": "", "raw": "Joshi, A. K. and Schabes, Y., in Handbook of Formal Lan- guages, eds G. Rozenberg and A. Salomma, pp.69-214 (Springer, Heidelberg, 1997).", "source_ref_id": "ae7e97221e46af7c8fba302e8adcbc4397...
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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7600aadfae11a81aac22546927f9ddd2e5e000c4
subsection
19
28
Fill in the protein sequences based on genetic code multiplicity
In the second step, the void character \pi in the void protein sequences will be substituted by 20 amino acids by calling a subprogram. The rules of substitutions in the subprogram are based rigorously on the genetic code multiplicity (Fig. S13, Tab. 3). Namely, \pi may be substituted by either of \pi _1, \pi _2, \pi _...
{ "cite_spans": [] }
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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78e01ce7cf316c823ca2d6d4067b5ec3e18ba274
subsection
20
28
Calculation of amino acid frequencies and their variation trends
When the parameter t is fixed, we can generate sufficient numerous protein sequences so that the amino acid frequency for each of the 20 amino acids goes to a certain constant value. Then, the amino acid frequencies vary with parameter t.We can study the evolution of amino acid frequencies by adjusting the parameter t ...
{ "cite_spans": [] }
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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805c563592b2079777a36f937d3080a51f0b11d4
subsection
21
28
The mechanism of the variation of amino acid frequencies in the simulation
According to the simulation by the model, the genetic code multiplicity plays central role in the evolution of amino acid frequencies. It should take more steps of substitutions to replace \pi in the void protein sequences by a late recruited amino acid. The placements of amino acids in the genetic code multiplicity tr...
{ "cite_spans": [] }
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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a37b10850674138275b71caa1e10162797e31905
subsection
22
28
Codon chronology
The codon chronology can be reconstructed based on the amino acid chronology and the primacy of thermostability and complementarity (Tab. 4) . The result of codon chronology in Tab. 4 is almost the same as the chronology in Ref. , but amino acid chronology in the first line of Tab. 4 in our calculation is replaced by a...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 142, "openalex_id": "", "raw": "Trifonov, E. N. The triplet code from first principle. J. Biomol. Struct. Dyn. 22, 1-11 (2004)", "source_ref_id": "b8457a2be4a86761d32d81769730b6241677a382", "start": 138 }, { ...
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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c8d8acb46c6e3404812b2b6d3c85ede6267ef527
subsection
23
28
Generation of DNA sequences according to codon chronology
There is a one to one relationship between amino acids and a codon at each of the 32 stages according to the codon chronology in Tab. 5. We separated the section [t_{min}, t_{max}] equally into 32 subsections so that each value of parameter t is in one of these subsections. Thus, the amino acids in the protein sequence...
{ "cite_spans": [] }
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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fffac3329eb1c4071a48bde8aa8b7ec722da6ea1
subsection
24
28
Calculation of genomic base compositions and their variation trends
For a fixed value of parameter t, which corresponds to a certain stage, we can obtain numerous DNA sequences. Then we can calculate the compositions of bases G, C, A, T. At last, we can obtain GC content or GA content at certain codon positions and the total GC content or GA content in all the DNA sequences. When the p...
{ "cite_spans": [] }
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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532ea3ad14f0c6196e13653001b13f24f0eb9a34
subsection
25
28
The mechanism of the variation of genomic base compositions in the simulation
According to the simulation in the model, the variation of base compositions in contemporary species can be explained by the codon chronology, genetic code multiplicity and amino acid chronology together. For instance, we can explain the relationship between genomic GC content and GC content at the first, second and th...
{ "cite_spans": [] }
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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c25c99a9ed7425509fb6f7327287e1757bfb02f8
subsection
26
28
Relationships between amino acid frequencies and average protein lengths
When the parameter t is fixed, a group of proteins can be generated by the model. So both the amino acid frequencies and average protein length can be calculated together. When t varies, we can obtain the relationship between R_{HQW/GV} and average protein length \bar{l} (Fig. 8, Embedded), which agrees with the experi...
{ "cite_spans": [] }
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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dda1431c7aaa753aaf83b4871e41e629f9a9a500
subsection
27
28
Conclusion
The variation of amino acid frequencies and the variation of genomic base compositions can be explained in a unified framework based on genetic code evolution. According to the model, we show that the genetic code multiplicity plays central roles in explanation of the variation of amino acid frequencies of contemporary...
{ "cite_spans": [] }
10.1016/j.physa.2009.06.017
0807.1762
Genetic code evolution as an initial driving force for molecular evolution
[ "Dirson Jian Li", "Shengli Zhang" ]
[ "q-bio.GN" ]
2,008
en
Quantitative Biology
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189676db9a6450068cd4fc5097960443e9f3844f
abstract
0
8
Abstract
We report high spatial resolution 11.2 and 18.1 micron imaging of V838 Monocerotis obtained with Gemini Observatory's Michelle instrument in 2007 March. Strong emission is observed from the unresolved stellar core of V838 Mon in our Gemini imagery, and is confirmed by Spitzer MIPS 24 micron imaging obtained in 2007 Apr...
{ "cite_spans": [] }
10.1086/591735
0807.1763
High Spatial Resolution Mid-IR Imaging of V838 Monocerotis: Evidence of New Circumstellar Dust Creation
[ "John P. Wisniewski", "Mark Clampin", "Karen S. Bjorkman", "Richard K. Barry" ]
[ "astro-ph" ]
2,008
en
Physics
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e6390bc1adce176594c543e48c4e73792e87a78a
subsection
1
8
Introduction
V838 Monocerotis experienced three photometric outbursts in early 2002, beginning with an initial event on 2002 January 6.6 and continuing with events in 2002 February and 2002 March , . The star's spectrum cooled through the F, G, and K spectral types throughout February , transitioned to a late M-type giant by 2002 A...
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10.1086/591735
0807.1763
High Spatial Resolution Mid-IR Imaging of V838 Monocerotis: Evidence of New Circumstellar Dust Creation
[ "John P. Wisniewski", "Mark Clampin", "Karen S. Bjorkman", "Richard K. Barry" ]
[ "astro-ph" ]
2,008
en
Physics
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3d2b14537e056d46b34fdfb1b07b137148d8e536
subsection
2
8
Observations
We obtained N^{^{\prime }} (11.2\mu m) and Q_{a} (18.1\mu m) imaging of V838 Mon on 2007 March 21-22 using Gemini Obervatory's Michelle imager. Michelle is a 320 x 240 pixel array which has a 320 x 240 field of view (01 per pixel). All observations were obtained using a standard chop-nod mode with the same instrument c...
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10.1086/591735
0807.1763
High Spatial Resolution Mid-IR Imaging of V838 Monocerotis: Evidence of New Circumstellar Dust Creation
[ "John P. Wisniewski", "Mark Clampin", "Karen S. Bjorkman", "Richard K. Barry" ]
[ "astro-ph" ]
2,008
en
Physics
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7ee8163bce7d3ae2117eb0627a8648fe750f0034
subsection
3
8
Photometry of the Unresolved Point Source
We used simple aperture photometry to extract flux densities for the unresolved V838 Mon point source in our Gemini data. We explored the use of 5 circular apertures having radii ranging in size from 06-30 for our N^{^{\prime }} data and from 07-30 for our Q_{a} data, and found consistent results from each. The mean fl...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 1143, "openalex_id": "", "raw": "Banerjee, D.P.K., Su, K.Y.L., Misselt, K.A., & Ashok, N.M. 2006, ApJL, 644, 57", "source_ref_id": "70d6931d8aab17bf282b917b8910cf2a0b0ca5d4", "start": 1019 }, { "arxiv_id"...
10.1086/591735
0807.1763
High Spatial Resolution Mid-IR Imaging of V838 Monocerotis: Evidence of New Circumstellar Dust Creation
[ "John P. Wisniewski", "Mark Clampin", "Karen S. Bjorkman", "Richard K. Barry" ]
[ "astro-ph" ]
2,008
en
Physics
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23df5f66434eb6be93e054e58d11fa5c136cfcc1
subsection
4
8
Extended Emission
Gemini's Michelle provides a 10-fold improvement in spatial resolution compared to Spitzer's MIPS; hence, our data provide us the unique opportunity to search for mid-IR extended emission interior to that probed by . Comparison of median azimuthally averaged radial profiles of our 11.2\mu m and 18.1\mu m imagery of V83...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 216, "openalex_id": "", "raw": "Banerjee, D.P.K., Su, K.Y.L., Misselt, K.A., & Ashok, N.M. 2006, ApJL, 644, 57", "source_ref_id": "70d6931d8aab17bf282b917b8910cf2a0b0ca5d4", "start": 0 }, { "arxiv_id": ""...
10.1086/591735
0807.1763
High Spatial Resolution Mid-IR Imaging of V838 Monocerotis: Evidence of New Circumstellar Dust Creation
[ "John P. Wisniewski", "Mark Clampin", "Karen S. Bjorkman", "Richard K. Barry" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.04935423284769058, -0.03418475016951561, -0.0637911856174469, -0.027103623375296593, -0.011171088553965092, -0.025730129331350327, -0.04514218494296074, 0.005955624394118786, 0.03500884771347046, 0.03812210261821747, -0.022677918896079063, 0.016588760539889336, -0.03354378789663315, 0.0...
06003233fed326e2a3063616c98c10d1e653f9f8
subsection
5
8
Extended Emission
This is exactly the flux density one would expect to see if the extended emission component did not vary between 2004 and 2007, given the reported 2004 extended emission flux of 0.91 Jy and our use of a scaling factor of 1.97, i.e.24\mu m_{2007} - (1.97 \times 24\mu m_{2004}) = 24\mu m_{net}0.91 Jy - (1.97 \times 0.91 ...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 714, "openalex_id": "", "raw": "Banerjee, D.P.K., Su, K.Y.L., Misselt, K.A., & Ashok, N.M. 2006, ApJL, 644, 57", "source_ref_id": "70d6931d8aab17bf282b917b8910cf2a0b0ca5d4", "start": 0 } ] }
10.1086/591735
0807.1763
High Spatial Resolution Mid-IR Imaging of V838 Monocerotis: Evidence of New Circumstellar Dust Creation
[ "John P. Wisniewski", "Mark Clampin", "Karen S. Bjorkman", "Richard K. Barry" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.05603295564651489, 0.00296416156925261, -0.022034745663404465, -0.00814095325767994, -0.012917183339595795, -0.04791489243507385, -0.055941399186849594, 0.02027990110218525, 0.023560697212815285, 0.006637890823185444, -0.0151298139244318, 0.02984762005507946, -0.029221979901194572, -0.0...
99f73af83b212d0526fe96ab2a204566a773b235
subsection
6
8
Discussion
We detect no evidence of extended 18.1 \mu m emission above a level of \sim 7 mJy from radial distances of 1860 AU (03) to 93000 AU (150), assuming a distance of 6.2 kpc . Making the simple assumption that V838 Mon's circumstellar ejecta expands at a constant velocity, this gap of thermal IR emission suggests no circum...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 171, "openalex_id": "", "raw": "Sparks, W.B. 2008, AJ, 135, 605", "source_ref_id": "4f17b6ff8dad87f11335a1e4c7eb4035efca5ce7", "start": 0 }, { "arxiv_id": "", "doi": "", "end": 482, "ope...
10.1086/591735
0807.1763
High Spatial Resolution Mid-IR Imaging of V838 Monocerotis: Evidence of New Circumstellar Dust Creation
[ "John P. Wisniewski", "Mark Clampin", "Karen S. Bjorkman", "Richard K. Barry" ]
[ "astro-ph" ]
2,008
en
Physics
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70a69cfbbecf53927c9dcd82f8b377c3ddd6a9e0
subsection
7
8
Discussion
The enhanced flux at 18.1, 24, and 70 \mu m we observed in 2007 suggests that the equally strong (2007 epoch) 11.2 \mu m flux might not represent an additional enhancement of gas-phase molecular emission above that suggested by , but rather represents a warm thermal dust emission component.Early post-outburst polarimet...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 291, "openalex_id": "", "raw": "Lynch, D.K. et al. 2004, ApJ, 607, 460", "source_ref_id": "4e32d30e2dcc95108bd260e1eb7f303ab1e91e04", "start": 0 }, { "arxiv_id": "", "doi": "", "end": 501, ...
10.1086/591735
0807.1763
High Spatial Resolution Mid-IR Imaging of V838 Monocerotis: Evidence of New Circumstellar Dust Creation
[ "John P. Wisniewski", "Mark Clampin", "Karen S. Bjorkman", "Richard K. Barry" ]
[ "astro-ph" ]
2,008
en
Physics
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47a5ab30d3814d77b50dfa08a2997cd3ed74fe1c
abstract
0
8
Abstract
We numerically investigate the six-species predator-prey game in complex networks as well as in $d$-dimensional hypercubic lattices with $d=1,2,..., 6$. The interaction topology of the six species contains two loops, each of which is composed of cyclically predating three species. As the mutation rate $P$ is lowered be...
{ "cite_spans": [] }
10.1103/PhysRevE.79.066114
0807.1764
Reentrant phase transition in a predator-prey model
[ "Sung-Guk Han", "Su-Chan Park", "Beom Jun Kim" ]
[ "cond-mat.stat-mech", "q-bio.PE" ]
2,008
en
Physics
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c8c0f489b98154fb44a430e762ad7ee0f07a1c7c
subsection
1
8
Introduction
Recently, nonequilibrium dynamical systems as well as standard equilibrium statistical mechanical model systems have been intensively studied in the interaction structure of complex networks . Effects of shortcuts in the Watts-Strogatz (WS) networks  on collective dynamic behaviors have been drawn much attention, revea...
{ "cite_spans": [] }
10.1103/PhysRevE.79.066114
0807.1764
Reentrant phase transition in a predator-prey model
[ "Sung-Guk Han", "Su-Chan Park", "Beom Jun Kim" ]
[ "cond-mat.stat-mech", "q-bio.PE" ]
2,008
en
Physics
[ -0.027362870052456856, -0.02334924228489399, -0.061013251543045044, -0.005711407866328955, -0.009744112379848957, 0.0006190220010466874, 0.0497811958193779, -0.015093072317540646, 0.00229486427269876, 0.015054920688271523, -0.002601990709081292, 0.0006161605706438422, -0.03555799648165703, ...
aa80c6676dab6f6b0580555be3e6c2a4d0b4bd86
subsection
2
8
Introduction
Specifically, Szabó et al.  have shown that the predator-prey game played on a 2D regular lattice exhibits a phase transition of the 2D Ising universality as the mutation rate is changed, and also identified the relevant order parameter detecting the Z_2 symmetry breaking of the defensive alliance of three cyclically p...
{ "cite_spans": [] }
10.1103/PhysRevE.79.066114
0807.1764
Reentrant phase transition in a predator-prey model
[ "Sung-Guk Han", "Su-Chan Park", "Beom Jun Kim" ]
[ "cond-mat.stat-mech", "q-bio.PE" ]
2,008
en
Physics
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5e52887727fbc5556b04f92703a98cfac20846d2
subsection
3
8
Defensive alliance process
We start from the description of how the DAP is implemented on general networks. The algorithm for the simulations is as follows: Initially at time t=0, six species are equally distributed on vertices of the given network structure, with the density c_s of the species s given by c_s(t=0) = 1/6 for all species (s=0,1, \...
{ "cite_spans": [] }
10.1103/PhysRevE.79.066114
0807.1764
Reentrant phase transition in a predator-prey model
[ "Sung-Guk Han", "Su-Chan Park", "Beom Jun Kim" ]
[ "cond-mat.stat-mech", "q-bio.PE" ]
2,008
en
Physics
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60a7b0b1d995841575c230cf59949b3a104a9b67
subsection
4
8
DAP in the WS networks
We first construct WS networks for the DAP as follows : (i) 1D and 2D regular lattices are first built. For 1D each vertex has connections to its four neighbors (nearest and next-nearest neighbors), whereas for 2D we assume only four nearest neighbor connections. (ii) With the rewiring probability \alpha one end of eac...
{ "cite_spans": [] }
10.1103/PhysRevE.79.066114
0807.1764
Reentrant phase transition in a predator-prey model
[ "Sung-Guk Han", "Su-Chan Park", "Beom Jun Kim" ]
[ "cond-mat.stat-mech", "q-bio.PE" ]
2,008
en
Physics
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0c006ca94b807e2506ec32f4108cac076c525369
subsection
5
8
DAP in the WS networks
At \alpha = 0,WS_1 and WS_2 correspond to the regular 1D and 2D lattices.(c) m versus \alpha for the WS_2 networks of the sizesN=256 \times 256 and 512 \times 512 with \mu set to 6.0, followingthe vertical arrow in (b). The reentrant behavior is again seen veryclearly.]It is very interesting that the phase diagrams in ...
{ "cite_spans": [] }
10.1103/PhysRevE.79.066114
0807.1764
Reentrant phase transition in a predator-prey model
[ "Sung-Guk Han", "Su-Chan Park", "Beom Jun Kim" ]
[ "cond-mat.stat-mech", "q-bio.PE" ]
2,008
en
Physics
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dbce65737a17fd23fb900ff5d52c753ef1c0dbe7
subsection
6
8
DAP in the WS networks
It appears that \alpha ^* is close to the value of \alpha at the end point of the lob structure in the phase diagram, i.e., \alpha ^* \approx 0.1 for the WS_1 network. [Figure: (Color online) Phase transitions in 3D [for (a)-(c)], 4D [for (d)-(f)],and 5D [for (g)-(i)] regular hypercubic lattices in terms of the mutatio...
{ "cite_spans": [] }
10.1103/PhysRevE.79.066114
0807.1764
Reentrant phase transition in a predator-prey model
[ "Sung-Guk Han", "Su-Chan Park", "Beom Jun Kim" ]
[ "cond-mat.stat-mech", "q-bio.PE" ]
2,008
en
Physics
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db1eaf13d4c3741c00ff9fb6b9daa31da1341aa4
subsection
7
8
DAP in 3-, 4-, and 5-dimensional regular lattices
The results in three-, four-, and five-dimensional regular hypercubic lattices are given in Fig. REF for hypercubic lattices with the linear size L (the total number of individual species N = L^d). We use the system size L=16, 20, 24, 28, 32, and 48 for 3D, L=12, 14, 16, 18, and 20 for 4D, and L=8, 10, 12 and 14 for 5...
{ "cite_spans": [] }
10.1103/PhysRevE.79.066114
0807.1764
Reentrant phase transition in a predator-prey model
[ "Sung-Guk Han", "Su-Chan Park", "Beom Jun Kim" ]
[ "cond-mat.stat-mech", "q-bio.PE" ]
2,008
en
Physics
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48c3de3af53f9ceca280794a12d12c890bb784be
abstract
0
19
Abstract
We present the first multi-color view of the scattered light disk of the Herbig Ae star HD 163296, based on coronagraphic observations from the Hubble Space Telescope Advanced Camera for Surveys (ACS). Radial profile fits of the surface brightness along the disk's semi-major axis indicates that the disk is not continuo...
{ "cite_spans": [] }
10.1086/589629
0807.1766
The HD 163296 Circumstellar Disk in Scattered Light: Evidence of Time-Variable Self-Shadowing
[ "John P. Wisniewski", "Mark Clampin", "Carol A. Grady", "David R. Ardila", "Holland C. Ford", "David A. Golimowski", "Garth D. Illingworth", "John E. Krist", ";" ]
[ "astro-ph" ]
2,008
en
Physics
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c2b34087e78c7c75c6c0be68c955123b10545fc9
subsection
1
19
Introduction
Investigations of the nature and evolution of dust grains in proto-planetary systems are motivated in part by our desire to understand the birth and evolution of planetary bodies, which originate from these systems. It is well established that Herbig Ae/Be stars are intermediate mass pre-main-sequence stars, analogous ...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 427, "openalex_id": "", "raw": "Herbig, G. 1960, ApJS, 4, 337", "source_ref_id": "70dbedf1b5f40861c2edad3ba2369fb82efff901", "start": 216 }, { "arxiv_id": "", "doi": "", "end": 427, "ope...
10.1086/589629
0807.1766
The HD 163296 Circumstellar Disk in Scattered Light: Evidence of Time-Variable Self-Shadowing
[ "John P. Wisniewski", "Mark Clampin", "Carol A. Grady", "David R. Ardila", "Holland C. Ford", "David A. Golimowski", "Garth D. Illingworth", "John E. Krist", ";" ]
[ "astro-ph" ]
2,008
en
Physics
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4a7d576f5b84773708f46a0b7aa74c8371c97f3e
subsection
2
19
Introduction
The possible mechanisms which might explain the observed scattered light variability are discussed in Section . We provide a summary of our main results in Section .
{ "cite_spans": [] }
10.1086/589629
0807.1766
The HD 163296 Circumstellar Disk in Scattered Light: Evidence of Time-Variable Self-Shadowing
[ "John P. Wisniewski", "Mark Clampin", "Carol A. Grady", "David R. Ardila", "Holland C. Ford", "David A. Golimowski", "Garth D. Illingworth", "John E. Krist", ";" ]
[ "astro-ph" ]
2,008
en
Physics
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69020ac9c2589f745404efa639c45bc25798672b
subsection
3
19
Observations and Data Reduction
We obtained coronagraphic imaging of HD 163296 in the HST ACS F435W filter via the cycle 12 GTO program 9987, and in the ACS F606W and F814W filters via the cycle 11 GTO program 9295. All observations utilized the coronagraphic mode of the High Resolution Channel (HRC) camera, along with its 18 diameter occulting spot,...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 1302, "openalex_id": "", "raw": "Clampin, M. et al. 2003, AJ, 126, 385", "source_ref_id": "dc3bf6d9c2ee799faa8b0be4e797e949d9b1ef6f", "start": 1180 }, { "arxiv_id": "", "doi": "", "end": 1302,...
10.1086/589629
0807.1766
The HD 163296 Circumstellar Disk in Scattered Light: Evidence of Time-Variable Self-Shadowing
[ "John P. Wisniewski", "Mark Clampin", "Carol A. Grady", "David R. Ardila", "Holland C. Ford", "David A. Golimowski", "Garth D. Illingworth", "John E. Krist", ";" ]
[ "astro-ph" ]
2,008
en
Physics
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877f563799484abd87f7e5f2c57cef837642e26f
subsection
4
19
Disk Characteristics Derived from HST ACS Observations
Figures REF , REF , and REF present the PSF-subtracted, roll angle combined, calibrated images of HD 163296 in the F435W, F606W, and F814W filters respectively, using a square-root intensity stretch and a 3 pixel Gaussian kernel smoothing function. We have masked regions interior to a radial distance of 20, which are d...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 532, "openalex_id": "", "raw": "Clampin, M. et al. 2003, AJ, 126, 385", "source_ref_id": "dc3bf6d9c2ee799faa8b0be4e797e949d9b1ef6f", "start": 360 }, { "arxiv_id": "", "doi": "", "end": 532, ...
10.1086/589629
0807.1766
The HD 163296 Circumstellar Disk in Scattered Light: Evidence of Time-Variable Self-Shadowing
[ "John P. Wisniewski", "Mark Clampin", "Carol A. Grady", "David R. Ardila", "Holland C. Ford", "David A. Golimowski", "Garth D. Illingworth", "John E. Krist", ";" ]
[ "astro-ph" ]
2,008
en
Physics
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5b1745883ee32d7afd1d9dd272938fed7f8c2b9d
subsection
5
19
Disk Surface Brightness
While the surface brightness profile of portions of the HD 163296 disk were characterized via white-light STIS coronagraphic imaging , the large occulting wedges used by this coronagraph prevents an investigation of the full radial and azimuthal structure of the disk. Our ACS images do not suffer from such artifacts, h...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 268, "openalex_id": "", "raw": "Grady, C.A., Devine, D., Woodgate, B., Kimble, R., Bruhweiler, F.C., Boggess, A., Linsky, J.L., Plait, P., Clampin, M., & Kalas, P. 2000, ApJ, 544, 895", "source_ref_id": "045fbd992b5015c857d8...
10.1086/589629
0807.1766
The HD 163296 Circumstellar Disk in Scattered Light: Evidence of Time-Variable Self-Shadowing
[ "John P. Wisniewski", "Mark Clampin", "Carol A. Grady", "David R. Ardila", "Holland C. Ford", "David A. Golimowski", "Garth D. Illingworth", "John E. Krist", ";" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.0028597076889127493, 0.012675047852098942, -0.05573663488030434, -0.008752726949751377, -0.003615173976868391, 0.00818803533911705, -0.020298391580581665, 0.026235289871692657, 0.024174926802515984, 0.04819723218679428, -0.016894977539777756, 0.029287679120898247, -0.011255687102675438, ...
ea3f70aaa2be20521c7387079f5d9c2cf199d6b8
subsection
6
19
Disk Surface Brightness
As the 1998 epoch STIS data are significantly fainter than that measured in each bandpass of our ACS data, it is clear that no combination of the ACS data can reproduce the behavior of the STIS scattered light surface brightnesses. We suggest that the observed multi-epoch behavior of the disk's surface brightness is on...
{ "cite_spans": [] }
10.1086/589629
0807.1766
The HD 163296 Circumstellar Disk in Scattered Light: Evidence of Time-Variable Self-Shadowing
[ "John P. Wisniewski", "Mark Clampin", "Carol A. Grady", "David R. Ardila", "Holland C. Ford", "David A. Golimowski", "Garth D. Illingworth", "John E. Krist", ";" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.02070584148168564, -0.0058363922871649265, -0.06149192154407501, -0.0077017489820718765, -0.057463668286800385, -0.07836786657571793, -0.008750773966312408, 0.06799206137657166, 0.013015535660088062, 0.03454533964395523, -0.011253174394369125, 0.03839049115777016, -0.02827407792210579, ...
6ebd6216e142c092ceaa12acfac42d3dbc3cb4bb
subsection
7
19
Disk Size
A large range of sizes have been suggested for the HD 163296 circumstellar disk. assumed an outer radius of 50 AU in their SED fitting of the system. reported that CO emission, likely produced in the upper layers of the disk, extended out to a radial distance of 540 AU; moreover, they reported an unexpected deficit of...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 594, "openalex_id": "", "raw": "Dominik, C., Dullemond, C.P., Waters, L.B.F.M., & Walch, S. 2003, A&A, 398, 607", "source_ref_id": "4860375d9a52094cb1ffc360e40d79329543ee9f", "start": 0 }, { "arxiv_id": "...
10.1086/589629
0807.1766
The HD 163296 Circumstellar Disk in Scattered Light: Evidence of Time-Variable Self-Shadowing
[ "John P. Wisniewski", "Mark Clampin", "Carol A. Grady", "David R. Ardila", "Holland C. Ford", "David A. Golimowski", "Garth D. Illingworth", "John E. Krist", ";" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.01764862611889839, -0.004511306528002024, -0.0449986606836319, -0.012225907295942307, -0.008259923197329044, -0.008099758997559547, -0.05268656834959984, 0.020668875426054, -0.013751285150647163, 0.0008956830715760589, 0.01696220599114895, 0.029653353616595268, -0.008999732322990894, 0....
c6ffd8f97b5892a01df5edc28b9597123d799a6e
subsection
8
19
Disk Geometry
Power-law fits to scattered light imagery provide one means to diagnose the geometry of Herbig Ae circumstellar disks (see e.g. ). As seen in Table REF , the surface brightness of the HD 163296 disk in the ACS F435W, F606W, and F814W filters follow a \sim r^{-4} dependence. These data clearly deviate from the expected ...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 130, "openalex_id": "", "raw": "Grady, C.A. et al. 2007, ApJ, 665, 1391", "source_ref_id": "96ea36d259fc1aeb44ffe648069af507e505d5e5", "start": 0 }, { "arxiv_id": "", "doi": "", "end": 703, ...
10.1086/589629
0807.1766
The HD 163296 Circumstellar Disk in Scattered Light: Evidence of Time-Variable Self-Shadowing
[ "John P. Wisniewski", "Mark Clampin", "Carol A. Grady", "David R. Ardila", "Holland C. Ford", "David A. Golimowski", "Garth D. Illingworth", "John E. Krist", ";" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.02042778581380844, -0.010191008448600769, -0.028803329914808273, -0.012952344492077827, -0.007273298688232899, -0.01774272881448269, 0.03463112190365791, 0.0034078091848641634, -0.01437878143042326, 0.014333013445138931, -0.012151405215263367, 0.022350041195750237, -0.0022769581992179155,...
ceef16de958ea58f5b1af7cd8276627ab76d632d
subsection
9
19
Disk Color
Our multi-filter HST ACS dataset also allows us to provide the first measurement of the color of HD 163296's scattered light disk. We first calculated the surface brightness at radial distances of 30 and 35 along the disk semi-major axis (PAs of 132^{\circ } and 312^{\circ }). The median flux within 10 x 10 apertures w...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 1588, "openalex_id": "", "raw": "Sirianni, M. et al. 2005, PASP, 117, 1049", "source_ref_id": "640b94f13b3ab79f3a26f41127839c6f38207228", "start": 1148 }, { "arxiv_id": "", "doi": "", "end": 1...
10.1086/589629
0807.1766
The HD 163296 Circumstellar Disk in Scattered Light: Evidence of Time-Variable Self-Shadowing
[ "John P. Wisniewski", "Mark Clampin", "Carol A. Grady", "David R. Ardila", "Holland C. Ford", "David A. Golimowski", "Garth D. Illingworth", "John E. Krist", ";" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.023227455094456673, -0.021441901102662086, -0.06052567809820175, 0.007928161881864071, -0.012689637951552868, -0.0006810283521190286, -0.028278890997171402, 0.020312577486038208, 0.015543471090495586, 0.01605471968650818, -0.04422678425908089, 0.011957102455198765, -0.008447040803730488, ...
3a7238d5c6aaa22f234019b18571209519e2a57e
subsection
10
19
Disk Color
The detection of a non-continuously flared disk and red (V-I) disk color from our spatially resolved scattered light imagery is thus consistent (though not conclusive) with such phenomenon occurring. We also note that our HD 163296 imagery does not exhibit significant evidence of a scattering asymmetry due to differenc...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 417, "openalex_id": "", "raw": "Krist, J.E. et al. 2005b, AJ, 130, 2778", "source_ref_id": "4ff5560a8220ff3e4e20bc5a5df1c74fc031603f", "start": 200 }, { "arxiv_id": "", "doi": "", "end": 649, ...
10.1086/589629
0807.1766
The HD 163296 Circumstellar Disk in Scattered Light: Evidence of Time-Variable Self-Shadowing
[ "John P. Wisniewski", "Mark Clampin", "Carol A. Grady", "David R. Ardila", "Holland C. Ford", "David A. Golimowski", "Garth D. Illingworth", "John E. Krist", ";" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.049847785383462906, -0.020268786698579788, -0.02832746133208275, 0.006959764286875725, -0.03492092341184616, 0.01814728043973446, -0.018696734681725502, 0.06630091369152069, 0.014148468151688576, -0.00869207363575697, -0.011195147410035133, -0.004971805028617382, -0.019704069942235947, ...
5c456889410e0ec34f9b8fbca10483c10b519e15
subsection
11
19
Morphological Features
The superlative spatial resolution of the HST ACS allows for the search of both radial and azimuthal morphological structures within the HD 163296 scattered light disk. Simple visual inspection of our F606W and F814W images (Figure REF ) reveals no clear evidence of disk structure. By contrast, our later epoch F435W da...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 537, "openalex_id": "", "raw": "Grady, C.A., Devine, D., Woodgate, B., Kimble, R., Bruhweiler, F.C., Boggess, A., Linsky, J.L., Plait, P., Clampin, M., & Kalas, P. 2000, ApJ, 544, 895", "source_ref_id": "045fbd992b5015c857d8...
10.1086/589629
0807.1766
The HD 163296 Circumstellar Disk in Scattered Light: Evidence of Time-Variable Self-Shadowing
[ "John P. Wisniewski", "Mark Clampin", "Carol A. Grady", "David R. Ardila", "Holland C. Ford", "David A. Golimowski", "Garth D. Illingworth", "John E. Krist", ";" ]
[ "astro-ph" ]
2,008
en
Physics
[ 0.013820972293615341, -0.007852998562157154, -0.015293886885046959, 0.002478388138115406, -0.0019346307963132858, -0.01973552443087101, 0.003922683652490377, 0.0149580929428339, 0.03370149806141853, 0.04227950796484947, 0.0023123989813029766, -0.0010627114679664373, 0.02103290893137455, 0....
9957acd9229fbf1cf299182fd71f60d3d5af1a0b
subsection
12
19
Morphological Features
Note that our ACS radial profile cuts correspond to the median average of a 10 pixel wide (025 arcsec) aperture which were subsequently averaged in 3 (radial) pixel bins, while our STIS radial profile cuts correspond to the median average of a 5 pixel wide (025 arcsec) aperture which were subsequently averaged in 3 (ra...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 647, "openalex_id": "", "raw": "Grady, C.A., Devine, D., Woodgate, B., Kimble, R., Bruhweiler, F.C., Boggess, A., Linsky, J.L., Plait, P., Clampin, M., & Kalas, P. 2000, ApJ, 544, 895", "source_ref_id": "045fbd992b5015c857d8...
10.1086/589629
0807.1766
The HD 163296 Circumstellar Disk in Scattered Light: Evidence of Time-Variable Self-Shadowing
[ "John P. Wisniewski", "Mark Clampin", "Carol A. Grady", "David R. Ardila", "Holland C. Ford", "David A. Golimowski", "Garth D. Illingworth", "John E. Krist", ";" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.020769190043210983, -0.005344899836927652, -0.03833372890949249, 0.00837024301290512, -0.017396677285432816, -0.027254793792963028, -0.007920065894722939, 0.03222963213920593, 0.029696432873606682, 0.02722427248954773, -0.00964447297155857, 0.023958580568432808, 0.017488237470388412, 0....
c3fb7c63960d337a7d74c1ed655bb6496cd314e0
subsection
13
19
The Multi-Epoch Behavior of the HD 163296 Scattered Light Disk
presented white-light HST STIS coronagraphic observations of HD 163296, obtained in September 1998. The STIS observations were characterized by a featureless signal from 15 to 25, a darker zone at 265 of width 04, and two bright ansae peaking at 29 in the SE quadrant and 32 in the NW quadrant (see Figure REF ). consid...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 100, "openalex_id": "", "raw": "Grady, C.A., Devine, D., Woodgate, B., Kimble, R., Bruhweiler, F.C., Boggess, A., Linsky, J.L., Plait, P., Clampin, M., & Kalas, P. 2000, ApJ, 544, 895", "source_ref_id": "045fbd992b5015c857d8...
10.1086/589629
0807.1766
The HD 163296 Circumstellar Disk in Scattered Light: Evidence of Time-Variable Self-Shadowing
[ "John P. Wisniewski", "Mark Clampin", "Carol A. Grady", "David R. Ardila", "Holland C. Ford", "David A. Golimowski", "Garth D. Illingworth", "John E. Krist", ";" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.010038112290203571, -0.018337098881602287, -0.056384291499853134, -0.013752824626863003, -0.0032932788599282503, -0.054370567202568054, 0.0016494998708367348, 0.001962237525731325, -0.0020156316459178925, 0.07353146374225616, -0.016994616016745567, 0.012768845073878765, 0.0036594106350094...
e6ba45805324b0650d348384ac396d781563b6bb
subsection
14
19
Origin of the Observed Scattered Light Variability
Our analysis of multi-epoch, multi-color spatially resolved imagery of HD 163296 suggests that its scattered light disk is variable; we observe a \sim 1 mag arcsec^{-2} change in the overall surface brightness of the disk between epochs of observations, variability in the visibility of ansa structure(s), and azimuthall...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 1100, "openalex_id": "", "raw": "Grady, C.A., Devine, D., Woodgate, B., Kimble, R., Bruhweiler, F.C., Boggess, A., Linsky, J.L., Plait, P., Clampin, M., & Kalas, P. 2000, ApJ, 544, 895", "source_ref_id": "045fbd992b5015c857d...
10.1086/589629
0807.1766
The HD 163296 Circumstellar Disk in Scattered Light: Evidence of Time-Variable Self-Shadowing
[ "John P. Wisniewski", "Mark Clampin", "Carol A. Grady", "David R. Ardila", "Holland C. Ford", "David A. Golimowski", "Garth D. Illingworth", "John E. Krist", ";" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.009419520385563374, -0.0019277601968497038, -0.044328950345516205, 0.023476343601942062, -0.007794939447194338, -0.0336204431951046, -0.026450930163264275, 0.028113646432757378, 0.03697638586163521, 0.007810193579643965, -0.006033069454133511, 0.01144071388989687, -0.02951704151928425, ...
3cd46a2686a2fe54ea75b32a1c11f2fd121503bd
subsection
15
19
Origin of the Observed Scattered Light Variability
One suggested method to produce a self-shadowed disk is by inflation of the inner disk wall, which prevents copious amounts of photons from reaching at least part of the outer (flatter) disk. has noted that the infrared spectral energy distribution (IR SED) of HD 163296 can vary by \sim 30% on time-scales of 3 years or...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 440, "openalex_id": "", "raw": "Sitko, M. L. et al. 2008, ApJ, 678, 1070", "source_ref_id": "c66c8100e776efd7314c7594c5c5ef6076bc0e09", "start": 0 }, { "arxiv_id": "", "doi": "", "end": 669, ...
10.1086/589629
0807.1766
The HD 163296 Circumstellar Disk in Scattered Light: Evidence of Time-Variable Self-Shadowing
[ "John P. Wisniewski", "Mark Clampin", "Carol A. Grady", "David R. Ardila", "Holland C. Ford", "David A. Golimowski", "Garth D. Illingworth", "John E. Krist", ";" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.012246385216712952, 0.020525094121694565, -0.03421357646584511, 0.03616689518094063, -0.0031798635609447956, -0.021501751616597176, -0.015779143199324608, 0.04224048927426338, 0.04459057375788689, 0.020341970026493073, -0.018602296710014343, 0.03345056250691414, -0.04501786455512047, -0...
30fe8073966708347dd690a780964aa13452b389
subsection
16
19
Origin of the Observed Scattered Light Variability
We speculate that the inner disk wall might be azimuthally asymmetric, hence cast an azimuthally asymmetric shadow on the outer disk. Given the orbital period of material located at the inner wall sublimation radius, \le 1 week (Sitko 2007, personal communication), the time-scale for such a asymmetry to produce a brigh...
{ "cite_spans": [] }
10.1086/589629
0807.1766
The HD 163296 Circumstellar Disk in Scattered Light: Evidence of Time-Variable Self-Shadowing
[ "John P. Wisniewski", "Mark Clampin", "Carol A. Grady", "David R. Ardila", "Holland C. Ford", "David A. Golimowski", "Garth D. Illingworth", "John E. Krist", ";" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.04187752306461334, 0.03040088340640068, -0.011056948453187943, 0.007527729030698538, -0.007867297157645226, -0.017581233754754066, -0.03858104348182678, 0.026509204879403114, 0.03369736671447754, 0.02768433839082718, 0.04975245147943497, 0.014879951253533363, -0.027821693569421768, 0.01...
18bc42ae89cc5c7b3457131da4241a4313e9f3eb
subsection
17
19
Summary
We have presented the first multi-color, multi-epoch analysis of resolved optical scattered light imaging of the Herbig Ae star HD 163296. To summarize the observational properties of these data:We spatially resolved the HD 163296 scattered light disk over radial distances of 29-44 (350-540 AU) in the HST/ACS F435W, F6...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 1392, "openalex_id": "", "raw": "Grady, C.A., Devine, D., Woodgate, B., Kimble, R., Bruhweiler, F.C., Boggess, A., Linsky, J.L., Plait, P., Clampin, M., & Kalas, P. 2000, ApJ, 544, 895", "source_ref_id": "045fbd992b5015c857d...
10.1086/589629
0807.1766
The HD 163296 Circumstellar Disk in Scattered Light: Evidence of Time-Variable Self-Shadowing
[ "John P. Wisniewski", "Mark Clampin", "Carol A. Grady", "David R. Ardila", "Holland C. Ford", "David A. Golimowski", "Garth D. Illingworth", "John E. Krist", ";" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.0020700290333479643, 0.00996666494756937, -0.04609391838312149, 0.01875808835029602, -0.012820824980735779, -0.01857493259012699, -0.010729809291660786, 0.04203398898243904, 0.019994381815195084, 0.018635984510183334, -0.007234608288854361, 0.02065068483352661, -0.02831265516579151, 0.0...
bd00052a3123b296910dd04484c8012a4c084c2f
subsection
18
19
Summary
Based on the short (\le 1 week, Sitko 2007 personal communication) orbital time-scale of material located at the inner wall, we suggest that a series of resolved scattered light images of HD 163296, obtained during an epoch of enhanced self-shadowing, would provide a test of this particular suggested phenomenon.We than...
{ "cite_spans": [] }
10.1086/589629
0807.1766
The HD 163296 Circumstellar Disk in Scattered Light: Evidence of Time-Variable Self-Shadowing
[ "John P. Wisniewski", "Mark Clampin", "Carol A. Grady", "David R. Ardila", "Holland C. Ford", "David A. Golimowski", "Garth D. Illingworth", "John E. Krist", ";" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.04035120829939842, 0.02396043762564659, -0.04642525687813759, 0.015299579128623009, -0.008737165480852127, -0.004669995978474617, 0.05085106939077377, 0.028905140236020088, -0.0028729632031172514, 0.025883376598358154, 0.007516251876950264, 0.0023407211992889643, -0.017306456342339516, ...
aca4b1992a0448546c752ec36d3b64867df36228
abstract
0
13
Abstract
We report the discovery of an exact mapping from Galilean time and space coordinates to Minkowski spacetime coordinates, showing that Lorentz covariance and the spacetime construct are consistent with the existence of a dynamical 3-space, and "absolute motion". We illustrate this mapping first with the standard theory ...
{ "cite_spans": [] }
0807.1767
Unravelling Lorentz Covariance and the Spacetime Formalism
[ "Reginald T Cahill" ]
[ "physics.gen-ph" ]
2,008
en
Physics
[ -0.058718323707580566, 0.06970512121915817, -0.017807764932513237, 0.008613953366875648, -0.005649807397276163, 0.027985811233520508, 0.002786755096167326, 0.014145500026643276, 0.021195361390709877, -0.004326051101088524, 0.01583929732441902, 0.013611420057713985, -0.019059039652347565, -...
b30640503c2e2229ed4bdeae080a128c350edd56
subsection
1
13
Introduction
It is commonly argued that the manifest success of Lorentz covariance and the spacetime formalism in Special Relativity (SR) is inconsistent with the anisotropy of the speed of light, and indeed the existence of absolute motion, that is, a detectable motion relative to an actual dynamical 3-space, despite the repeated ...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 885, "openalex_id": "", "raw": "Minkowski H. “Raum und Zeit”, Physikalische Zeitschrift, 10 Jahrgang, 104-115, 1909. English translation in The Principle of Relativity by Lorentz H.A., Einstein A., Minkowski H. and Weyl H., transl...
0807.1767
Unravelling Lorentz Covariance and the Spacetime Formalism
[ "Reginald T Cahill" ]
[ "physics.gen-ph" ]
2,008
en
Physics
[ -0.02895226702094078, 0.05811809003353119, -0.020577769726514816, -0.00857280008494854, -0.011288028210401535, 0.03877590224146843, -0.023415030911564827, 0.02698448859155178, 0.029287856072187424, 0.0040080128237605095, 0.014010883867740631, 0.001988752279430628, -0.017359156161546707, -0...
644f2f2119ad2ad8d09f2b29b78918beefd2112b
subsection
2
13
Introduction
The conclusion is that Lorentz covariance and the spacetime formalism are artifacts of the use of peculiar non-physical space and time coordinates. The use of this class of coordinates has confounded 20th century physics, and lead to the existence of a “flowing" dynamical 3-space being overlooked. The dynamics of this ...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 1406, "openalex_id": "", "raw": "Miller D.C. Rev. Mod. Phys., 5, 203-242, 1933.", "source_ref_id": "9a5995e065dac76d069c405326dabd9f341ccb02", "start": 1099 }, { "arxiv_id": "", "doi": "", "en...
0807.1767
Unravelling Lorentz Covariance and the Spacetime Formalism
[ "Reginald T Cahill" ]
[ "physics.gen-ph" ]
2,008
en
Physics
[ -0.08116023242473602, 0.039420682936906815, -0.031091080978512764, -0.005301349796354771, 0.015095498412847519, 0.01713213138282299, 0.0016542881494387984, 0.024088723585009575, 0.01583539880812168, 0.002341747283935547, -0.02939769998192787, 0.023264916613698006, -0.0009458523127250373, -...
8942e0a135018338adaac85822ccad52a62c8d8a
subsection
3
13
Introduction
These cavity experiments are based on two mistaken notions: (i) that a breakdown of Lorentz symmetry is related to the existence of a preferred frame, and (ii) that vacuum-mode Michelson interferometers can detect a light speed anisotropy associated with such a preferred frame..There are now four different experimental...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 562, "openalex_id": "", "raw": "Miller D.C. Rev. Mod. Phys., 5, 203-242, 1933.", "source_ref_id": "9a5995e065dac76d069c405326dabd9f341ccb02", "start": 279 }, { "arxiv_id": "", "doi": "", "end"...
0807.1767
Unravelling Lorentz Covariance and the Spacetime Formalism
[ "Reginald T Cahill" ]
[ "physics.gen-ph" ]
2,008
en
Physics
[ -0.05818246304988861, -0.0028866103384643793, -0.018956616520881653, 0.010096458718180656, 0.010142247192561626, 0.014102989807724953, 0.02791598252952099, 0.02420707978308201, 0.012904846109449863, 0.006704261992126703, -0.027213886380195618, -0.023459194228053093, 0.004403368569910526, -...
780dad1c054054968f13cc33088999bc1db30078
subsection
4
13
Sound Wave Galilean Covariant Formalism
Let us first use the example of sound waves to discuss the mapping from Galilean space and time coordinates to Minkowski-Einstein spacetime coordinates - as in this case the underlying physics is well understood. The standard formulation for sound waves in a moving fluid is\left(\frac{\partial }{\partial t} +{\bf v}({\...
{ "cite_spans": [] }
0807.1767
Unravelling Lorentz Covariance and the Spacetime Formalism
[ "Reginald T Cahill" ]
[ "physics.gen-ph" ]
2,008
en
Physics
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91ee1dd843054c7afffbb7bf6dc1ba5ae43dcc0c
subsection
5
13
Sound Wave Galilean Covariant Formalism
Then the physical time and space coordinates of each are related by the Galilean transformationt^\prime &=&t, \\ x^\prime &=&x-Vt, \mbox{\ \ \ }y^\prime =y, \mbox{\ \ \ }z^\prime =z.We have taken the simplest case where V is the relative speed of the two observers in their common x directions. Then the derivatives are ...
{ "cite_spans": [] }
0807.1767
Unravelling Lorentz Covariance and the Spacetime Formalism
[ "Reginald T Cahill" ]
[ "physics.gen-ph" ]
2,008
en
Physics
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305c05ec2409616f227a72e67df339f7a1be885d
subsection
6
13
Sound Wave Lorentz Covariant Formalism
The above Galilean formalism for sound waves is well known and uses physically sensible choices for the time and space coordinates. Of course we could choose to use spherical or cylindrical space coordinates if we so desired. This would cause no confusion. However we could also choose to use a new class of time and spa...
{ "cite_spans": [] }
0807.1767
Unravelling Lorentz Covariance and the Spacetime Formalism
[ "Reginald T Cahill" ]
[ "physics.gen-ph" ]
2,008
en
Physics
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23263fac5359519743de1054b3f522a924dc7409
subsection
7
13
Sound Wave Lorentz Covariant Formalism
Eqn.(REF ) is now covariant under Lorentz transformationsLorentz did not construct the “Lorentz transformation" - and this nomenclature is very misleading as Lorentz held to a different interpretation of the so-called relativistic effects.,T^\prime &=&\gamma (V)\left(T+\frac{VX}{c^2}\right), \\ X^\prime &=&\gamma (V)(X...
{ "cite_spans": [] }
0807.1767
Unravelling Lorentz Covariance and the Spacetime Formalism
[ "Reginald T Cahill" ]
[ "physics.gen-ph" ]
2,008
en
Physics
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f55393ba94b2a729a69add44c075b5f635277df2
subsection
8
13
Dynamical 3-Space Theory
Here we briefly review the dynamics of the 3-space that is the analogue of the “flowing fluid" in the sound allegory. For zero vorticity we have , , \nabla .\left(\frac{\partial {\bf v} }{\partial t}+ ({\bf v}.{\bf \nabla }){\bf v}\right)+ \frac{\alpha }{8}\left((tr D)^2 -tr(D^2)\right)=-4\pi G\rho ,\nabla \times {\bf ...
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0807.1767
Unravelling Lorentz Covariance and the Spacetime Formalism
[ "Reginald T Cahill" ]
[ "physics.gen-ph" ]
2,008
en
Physics
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bec149099e39b20e8a8b7cb9770adbece75a5e3c
subsection
9
13
Dynamical 3-Space Theory
Together (REF ) and (REF ) amount to the derivation of gravity as a quantum effect, explaining both the equivalence principle (\bf g in (REF ) is independent of m) and the Lense-Thirring effect. Overall we see, on ignoring vorticity effects, that\nabla .{\bf g}=-4\pi G\rho -\frac{\alpha }{8}\left((tr D)^2 -tr(D^2)\righ...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 843, "openalex_id": "", "raw": "Cahill R.T. A Quantum Cosmology: No Dark Matter, Dark Energy nor Accelerating Universe, arXiv:0709.2909, 2007.", "source_ref_id": "074f0b7dd03a40d2cbfe5d264e8a3cb237c1931a", "start": 610...
0807.1767
Unravelling Lorentz Covariance and the Spacetime Formalism
[ "Reginald T Cahill" ]
[ "physics.gen-ph" ]
2,008
en
Physics
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391e7c5c87c83454947db7ae30d99c9221670044
subsection
10
13
Galilean Covariant Electromagnetic Theory
Hertz in 1890 noted that Maxwell had overlooked the velocity field that accompanies time derivatives, as in (REF ), and presented an improved formalism, and the minimal source-free form is\mu \left(\frac{\partial }{\partial t}+{\bf v.\nabla }\right) {\bf H}&=&-\nabla \times {\bf E},\\ \epsilon \left(\frac{\partial }{\p...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 848, "openalex_id": "", "raw": "Hertz H. On the Fundamental Equations of Electro-Magnetics for Bodies in Motion, Wiedemann's Ann. 41, 369, 1890; Electric Waves, Collection of Scientific Papers, Dover Pub., New York, 1962.", ...
0807.1767
Unravelling Lorentz Covariance and the Spacetime Formalism
[ "Reginald T Cahill" ]
[ "physics.gen-ph" ]
2,008
en
Physics
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ebbed3941f000838935c683d366352580dde1c8f
subsection
11
13
Galilean Covariant Electromagnetic Theory
Transforming to the Minkowski-Einstein T,X,Y,Z coordinates using (REF ) and (REF ) we obtain the form of the source-free “standard" Maxwell equations\frac{\partial ^2 {\bf E}}{\partial T^2} =c^2\overline{\nabla }^2{\bf E},\mbox{\ \ \ }\frac{\partial ^2 {\bf H}}{\partial T^2} =c^2\overline{\nabla }^2{\bf H}which is agai...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 2864, "openalex_id": "", "raw": "Braxmaier C. et al. Phys. Rev. Lett., 88, 010401, 2002; Müller H. et al. Phys. Rev. D, 68, 116006-1-17, 2003; Müller H. et al. Phys. Rev. D67, 056006,2003; Wolf P. et al. Phys. Rev. D, 70, 051902-1...
0807.1767
Unravelling Lorentz Covariance and the Spacetime Formalism
[ "Reginald T Cahill" ]
[ "physics.gen-ph" ]
2,008
en
Physics
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fd744c193415338ccefd284d2bfb9022a63cee8b
subsection
12
13
Conclusions
We have reported herein the discovery of an exact and invertible mapping from Galilean time and space coordinates to Minkowski-Einstein spacetime coordinates. This mapping removes the effects of the velocity of the dynamical 3-space relative to an observer, and so in this sense the Minkowski-Einstein coordinates are de...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 1994, "openalex_id": "", "raw": "Cahill R.T. Process Physics: From Information Theory to Quantum Space and Matter, Nova Science Pub., New York, 2005.", "source_ref_id": "14bcd8a123d90df11589960ba342917c06aeda2d", "star...
0807.1767
Unravelling Lorentz Covariance and the Spacetime Formalism
[ "Reginald T Cahill" ]
[ "physics.gen-ph" ]
2,008
en
Physics
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fa7e1fdc21c5651f5cbf9d54887d3d02de76c82a
abstract
0
9
Abstract
We carefully examine the negative refractive index slab perfect lens theory by Pendry and point out an inconsistency that can be resolved. As a result, we find negative index slabs do not amplify or enhance evanescent waves and therefore they do not make a perfect lens in the sense that was originally suggested.
{ "cite_spans": [] }
0807.1768
Revisiting the Perfect Lens
[ "Weiguo Yang", "John O. Schenk", "Michael A. Fiddy" ]
[ "physics.optics" ]
2,008
en
Physics
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7727f968dd13583a588a64b9ee40b1559775a234
subsection
1
9
Introduction
In his seminal paper , Pendry derived the fascinating result that a slab of negative index material, despite the fact that evanescent waves would decay away from the interfaces, amplifies the evanescent waves sustaining them through the material to the other side. Since these evanescent waves carry high spatial frequen...
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0807.1768
Revisiting the Perfect Lens
[ "Weiguo Yang", "John O. Schenk", "Michael A. Fiddy" ]
[ "physics.optics" ]
2,008
en
Physics
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47fb87b1c967927a4e452f1453fce5763a8d1d0c
subsection
2
9
Pendry’s Negative Index Perfect Lens Formulism
FigureREF shows an interface between two different materials. The (x-z) plane is chosen to be the plane that contains the propagation vector \mathbf {k}=(k_x,k_z) and a normal of the interface. Following Pendry’s notation , when k_x<|\mathbf {k}|, k_z is a real number and plane waves e^{i\mathbf {k}\cdot \mathbf {r}-i\...
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0807.1768
Revisiting the Perfect Lens
[ "Weiguo Yang", "John O. Schenk", "Michael A. Fiddy" ]
[ "physics.optics" ]
2,008
en
Physics
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ad7eb5048c5480edc183f01c677dc1b971ec6df7
subsection
3
9
Pendry’s Negative Index Perfect Lens Formulism
For reflected field, \omega \mu _0(H_{0S-})_x=k_zE_{0S-}, and \omega \mu _0(H_{0S-})_z=k_xE_{0S-}, and for the transmitted field, \omega \mu \mu _0(H_{1S+})_x=-k_zE_{1S+}, and \omega \mu \mu _0(H_{1S+})_z=k_xE_{1S+}. Combining these relations with the boundary conditions, one has equations for the transmitted and refle...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 621, "openalex_id": "", "raw": "J. B. Pendry, Phys. Rev. Lett. 85, 3966 (2000).", "source_ref_id": "5a593ef0a91dd6edaf31ffcbf2d19077e3b8bde3", "start": 217 }, { "arxiv_id": "", "doi": "", "end...
0807.1768
Revisiting the Perfect Lens
[ "Weiguo Yang", "John O. Schenk", "Michael A. Fiddy" ]
[ "physics.optics" ]
2,008
en
Physics
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9f3d3aa86229fe6e39ba8822c65c70ee263a2282
subsection
4
9
A simple solution to the apparent paradox
Consider the situation for which the medium has a negative refractive index for doubly negative materials (\epsilon <0 and \mu <0), and let us assume, for S-polarization, the evanescent wave in this medium takes the form,E_{1S+}=t[0,1,0]\exp (ik^\prime _z z+ik_x x+i\omega t+i\phi )where k^\prime _z is still given by Eq...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 491, "openalex_id": "", "raw": "J. B. Pendry, Phys. Rev. Lett. 85, 3966 (2000).", "source_ref_id": "5a593ef0a91dd6edaf31ffcbf2d19077e3b8bde3", "start": 357 }, { "arxiv_id": "", "doi": "", "end...
0807.1768
Revisiting the Perfect Lens
[ "Weiguo Yang", "John O. Schenk", "Michael A. Fiddy" ]
[ "physics.optics" ]
2,008
en
Physics
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a600e8f4786087e9a918dd694eb876b70e7c8850
subsection
5
9
A simple solution to the apparent paradox
The z component of the magnetic field is in phase with the y component of the electric field,\omega \mu _0 (H_{0S+})_z=k_x \exp (-|k_z|z)\cos (k_x x-\omega t+\phi _0),which indicates that there will be energy flow in the x direction if k_x is nonzero.Similarly for the reflected wave, we have,E_{0S-}=r[0,1,0]\exp (|k_z|...
{ "cite_spans": [] }
0807.1768
Revisiting the Perfect Lens
[ "Weiguo Yang", "John O. Schenk", "Michael A. Fiddy" ]
[ "physics.optics" ]
2,008
en
Physics
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f8698a4cb0cd96d48bef6a60013fecd08aac8b3d
subsection
6
9
A simple solution to the apparent paradox
Consequently, Eq.REF become,1+r&=&t \\ -|k_z|+|k_z|r&=&\frac{|k^\prime _z|}{\mu }twhich give the transmission and reflection coefficients for evanescent waves at the interface with the negative index medium,t&=&\frac{2\mu |k_z|}{\mu |k_z|-|k^\prime _z|} \\ r&=&\frac{\mu |k_z|+|k^\prime _z|}{\mu |k_z|-|k^\prime _z|},Thi...
{ "cite_spans": [] }
0807.1768
Revisiting the Perfect Lens
[ "Weiguo Yang", "John O. Schenk", "Michael A. Fiddy" ]
[ "physics.optics" ]
2,008
en
Physics
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2ae170214fd5dcea9e8a3e85df50e8a4c9b28be5
subsection
7
9
Another equivalent interpretation
Consider equivalent solutions to the Helmholz equation, \exp [-i(\omega t-\mathbf {k}\cdot \mathbf {r})] and \exp [-i(\omega t+\mathbf {k}\cdot \mathbf {r})], the difference between the two is that their phase velocities are in opposite directions. Using these solutions for positive and negative index media respectivel...
{ "cite_spans": [] }
0807.1768
Revisiting the Perfect Lens
[ "Weiguo Yang", "John O. Schenk", "Michael A. Fiddy" ]
[ "physics.optics" ]
2,008
en
Physics
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1e8b1a0fa12b0104c7d3567d03f9659cdadff0f6
subsection
8
9
Discussion
As mentioned in the introduction, Ref. is cited as an experimental verification of the amplification or enhancement of the evanescent wave in a negative index slab . The maximum transmission of a sliver slab, which serves as a lossy negative index slab, is plotted against the thickness of the slab in Fig.4 of Ref.. The...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 165, "openalex_id": "", "raw": "Z. Liu, N. Fang, T.-J. Yen, and X. Zhang, Applied Physics Letters 83, 5184 (2003), URL http://link.aip.org/link/?APL/83/5184/1.", "source_ref_id": "6aae5ccfa58b9969779dad0ba4ee596b58c95b11", ...
0807.1768
Revisiting the Perfect Lens
[ "Weiguo Yang", "John O. Schenk", "Michael A. Fiddy" ]
[ "physics.optics" ]
2,008
en
Physics
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a079b8f54c5dc47e6a9f2e6897c2a6b5ade5e910
abstract
0
9
Abstract
In helioseismology, there is a well-known offset between observed and computed oscillation frequencies. This offset is known to arise from improper modeling of the near-surface layers of the Sun, and a similar effect must occur for models of other stars. Such an effect impedes progress in asteroseismology, which involv...
{ "cite_spans": [] }
10.1086/591667
0807.1769
Correcting stellar oscillation frequencies for near-surface effects
[ "Hans Kjeldsen", "Timothy R. Bedding", "Joergen Christensen-Dalsgaard" ]
[ "astro-ph" ]
2,008
en
Physics
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34989c46021f6ca0b077c5d4b59a498045f86688
subsection
1
9
Introduction
Both helio- and asteroseismology involve comparing observed oscillation frequencies with those calculated from theoretical models. However, for the Sun there is a long-standing systematic offset between observed and computed frequencies that is known to arise from improper modeling of the near-surface layers , , , . Th...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 317, "openalex_id": "", "raw": "Christensen-Dalsgaard, J., Däppen, W., & Lebreton, Y., 1988, Nat, 336, 634.", "source_ref_id": "ef8b7a10a339f84fd33cd4c2975a56c1ef5ca68d", "start": 131 }, { "arxiv_id": "",...
10.1086/591667
0807.1769
Correcting stellar oscillation frequencies for near-surface effects
[ "Hans Kjeldsen", "Timothy R. Bedding", "Joergen Christensen-Dalsgaard" ]
[ "astro-ph" ]
2,008
en
Physics
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cc051f0c9c58cb0fd9130e0c11305997ff8d6e18
subsection
2
9
Method
The p-mode oscillations in solar-type stars for a given angular degree l are approximately equally spaced in frequency, with a separation of \mbox{$\Delta \nu $} (the so-called large separation; see for a review of the theory of solar-like oscillations). Since the offset from incorrect modelling of the near-surface lay...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 255, "openalex_id": "", "raw": "Christensen-Dalsgaard, J., 2004, Sol. Phys., 220, 137.", "source_ref_id": "1eb0fdab0ec20482c890bd274267d8106ddf1599", "start": 0 }, { "arxiv_id": "", "doi": "", ...
10.1086/591667
0807.1769
Correcting stellar oscillation frequencies for near-surface effects
[ "Hans Kjeldsen", "Timothy R. Bedding", "Joergen Christensen-Dalsgaard" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.019452843815088272, -0.0038695901166647673, -0.052759163081645966, 0.004287254065275192, -0.009444165043532848, 0.002126462757587433, 0.0076171234250068665, 0.018384844064712524, 0.03371826186776161, 0.03689174726605415, -0.015958961099386215, 0.006827566772699356, 0.000920672551728785, ...
11eafb8d4e1b45e07aca64be8800017906b9d2ae
subsection
3
9
Method
From homology scaling it then follows that, to a good approximation,\nu _{\rm best}(n) = r \nu _{\rm ref}(n),where the scaling factor r is related to the mean densities \bar{\rho }_{\rm best} and \bar{\rho }_{\rm ref} of the best and reference models by\bar{\rho }_{\rm best} = r^2 \bar{\rho }_{\rm ref}.Given a determin...
{ "cite_spans": [] }
10.1086/591667
0807.1769
Correcting stellar oscillation frequencies for near-surface effects
[ "Hans Kjeldsen", "Timothy R. Bedding", "Joergen Christensen-Dalsgaard" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.028220489621162415, 0.00016335718100890517, -0.029212556779384613, -0.020573943853378296, -0.01276713889092207, -0.0029933713376522064, 0.0090430723503232, 0.004735211841762066, 0.0430099181830883, 0.039469003677368164, -0.04652031138539314, 0.018147194758057594, -0.007379452232271433, ...
ba9035e6149aafaf8824f45b05ec4933c63db837
subsection
4
9
Method
For \nu _{\rm obs}(n) and \nu _{\rm ref}(n), we simply use the means of the given sets of frequencies, which we denote by \langle \nu _{\rm obs}(n) \rangle and \langle \nu _{\rm ref}(n) \rangle .To estimate the large separations, we calculate the slope of a linear least-squares fit to the given frequencies (as a functi...
{ "cite_spans": [] }
10.1086/591667
0807.1769
Correcting stellar oscillation frequencies for near-surface effects
[ "Hans Kjeldsen", "Timothy R. Bedding", "Joergen Christensen-Dalsgaard" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.025727326050400734, 0.022644929587841034, -0.06323489546775818, -0.0006747510051354766, -0.0010595736093819141, 0.013947078958153725, 0.02346893586218357, -0.0025540399365127087, 0.04159708693623543, 0.01982194371521473, -0.019928758963942528, 0.030671367421746254, -0.006340275052934885, ...
57cb48f56b680391bf2fcc47a5ad8b864601d5c9
subsection
5
9
Application to the Sun
For the Sun we took Model S of , as listed in the first row of Table . We assumed this to be the “best” solar model, in the sense defined above, which means we can set r=1 (see equation REF ). For the observed solar frequencies, we used those measured by with the GOLF instrument on the SOHO spacecraft.We followed the p...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 70, "openalex_id": "", "raw": "Christensen-Dalsgaard, J., Däppen, W., Ajukov, S. V., et al., 1996, Sci, 272, 1286.", "source_ref_id": "c251997a2ce0761229a69300dc0bd8ed290b12ba", "start": 0 }, { "arxiv_id"...
10.1086/591667
0807.1769
Correcting stellar oscillation frequencies for near-surface effects
[ "Hans Kjeldsen", "Timothy R. Bedding", "Joergen Christensen-Dalsgaard" ]
[ "astro-ph" ]
2,008
en
Physics
[ -0.007234634831547737, 0.00440717488527298, -0.07246845215559006, -0.018727630376815796, -0.02820591814815998, -0.03806577995419502, 0.028511177748441696, 0.03977522999048233, 0.03455530107021332, 0.06108229607343674, -0.007723049260675907, 0.03144166246056557, -0.0026557520031929016, -0.0...
027959e900af053aab62e71cdf12fee168341349
subsection
6
9
Application to
We have considered three stars for which observations and models have been published. For \alpha  Cen A we took observed frequencies (radial modes only) from four sources: , , and . This gave a set of 33 measured frequencies for 11 orders, all of which were given equal weight in the fitting process. For \alpha  Cen B t...
{ "cite_spans": [ { "arxiv_id": "", "doi": "", "end": 182, "openalex_id": "", "raw": "Bouchy, F., & Carrier, F., 2002, A&A, 390, 205.", "source_ref_id": "fb84c915e22f746cb3a69a24d9d027d00ac4ceb1", "start": 86 }, { "arxiv_id": "", "doi": "", "end"...
10.1086/591667
0807.1769
Correcting stellar oscillation frequencies for near-surface effects
[ "Hans Kjeldsen", "Timothy R. Bedding", "Joergen Christensen-Dalsgaard" ]
[ "astro-ph" ]
2,008
en
Physics
[ 0.031767215579748154, -0.0044248285703361034, -0.052762262523174286, -0.019591309130191803, -0.005992590915411711, -0.048398468643426895, 0.010558555833995342, 0.010520410723984241, 0.03463572636246681, 0.028090031817555428, -0.049374982714653015, 0.0291580930352211, 0.013427065685391426, ...