chrom stringclasses 12
values | pos int64 36.1k 249M | ref stringclasses 4
values | alt stringclasses 4
values | label bool 2
classes | subset stringclasses 8
values | match_group int64 0 2.16k | rsid stringlengths 3 15 | pip float64 0 1 | traits stringclasses 279
values | MAF float64 0 0.5 | ld_score float64 1.01 3.79k | consequence stringclasses 13
values | consequence_cre stringclasses 29
values | exon_closest_pc_gene_id stringlengths 15 15 | distance_exon_pc int64 0 1.68M | exon_closest_nc_gene_id stringlengths 15 15 | distance_exon_nc int64 0 507k | distance_exon int64 0 507k | exon_closest_gene_id stringlengths 15 15 | consequence_final stringclasses 28
values | tss_closest_pc_gene_id stringlengths 15 15 | distance_tss_pc int64 0 1.69M | tss_closest_nc_gene_id stringlengths 15 15 | distance_tss_nc int64 0 531k | distance_tss int64 0 531k | tss_closest_gene_id stringlengths 15 15 | consequence_group stringclasses 8
values | distance_tss_pc_bin stringclasses 4
values | distance_exon_pc_bin stringclasses 7
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
11 | 84,883,918 | A | C | false | distal | 334 | rs17147716 | 0.000064 | 0.061096 | 112.13 | intron_variant | dELS | ENSG00000150672 | 39,158 | ENSG00000274006 | 3,288 | 3,288 | ENSG00000274006 | dELS | ENSG00000150672 | 39,261 | ENSG00000274006 | 3,288 | 3,288 | ENSG00000274006 | distal | NA | NA | |
11 | 85,725,309 | G | A | false | missense_variant | 288 | rs641393 | 0.001148 | 0.3618 | 292.57 | missense_variant | missense_variant | ENSG00000137501 | 0 | ENSG00000137501 | 0 | 0 | ENSG00000137501 | missense_variant | ENSG00000137501 | 595 | ENSG00000137501 | 1,158 | 595 | ENSG00000137501 | missense_variant | NA | NA | |
11 | 85,725,825 | G | C | false | missense_variant | 288 | rs597480 | 0.004461 | 0.36064 | 293.74 | missense_variant | missense_variant | ENSG00000137501 | 0 | ENSG00000137501 | 0 | 0 | ENSG00000137501 | missense_variant | ENSG00000137501 | 1,111 | ENSG00000137501 | 642 | 642 | ENSG00000137501 | missense_variant | NA | NA | |
11 | 85,726,221 | A | G | false | missense_variant | 293 | rs147296637 | 0.000923 | 0.000196 | 7.797 | missense_variant | missense_variant | ENSG00000137501 | 0 | ENSG00000137501 | 0 | 0 | ENSG00000137501 | missense_variant | ENSG00000137501 | 1,507 | ENSG00000137501 | 246 | 246 | ENSG00000137501 | missense_variant | NA | NA | |
11 | 85,726,225 | C | A | false | missense_variant | 293 | rs201835158 | 0.000064 | 0.000212 | 9.01 | missense_variant | missense_variant | ENSG00000137501 | 0 | ENSG00000137501 | 0 | 0 | ENSG00000137501 | missense_variant | ENSG00000137501 | 1,511 | ENSG00000137501 | 242 | 242 | ENSG00000137501 | missense_variant | NA | NA | |
11 | 85,726,285 | C | T | false | missense_variant | 293 | rs116639648 | 0.000051 | 0.000014 | 13.812 | missense_variant | missense_variant | ENSG00000137501 | 0 | ENSG00000137501 | 0 | 0 | ENSG00000137501 | missense_variant | ENSG00000137501 | 1,571 | ENSG00000137501 | 182 | 182 | ENSG00000137501 | missense_variant | NA | NA | |
11 | 85,757,665 | G | A | false | missense_variant | 302 | rs149582759 | 0.000098 | 0.004467 | 45.132 | missense_variant | missense_variant | ENSG00000137501 | 0 | ENSG00000137501 | 0 | 0 | ENSG00000137501 | missense_variant | ENSG00000137501 | 59 | ENSG00000137501 | 79 | 59 | ENSG00000137501 | missense_variant | NA | NA | |
11 | 85,777,126 | T | C | false | distal | 324 | rs76095821 | 0.000088 | 0.028593 | 66.339 | intron_variant | dELS | ENSG00000137501 | 19,011 | ENSG00000137501 | 19,056 | 19,011 | ENSG00000137501 | dELS | ENSG00000137501 | 19,122 | ENSG00000137501 | 19,380 | 19,122 | ENSG00000137501 | distal | NA | NA | |
11 | 85,855,126 | A | G | false | 5_prime_UTR_variant | 278 | rs11234446 | 0.001161 | 0.23802 | 287.63 | 5_prime_UTR_variant | 5_prime_UTR_variant | ENSG00000150676 | 0 | ENSG00000279742 | 182 | 0 | ENSG00000150676 | 5_prime_UTR_variant | ENSG00000150676 | 24 | ENSG00000279742 | 182 | 24 | ENSG00000150676 | 5_prime_UTR_variant | NA | NA | |
11 | 86,088,406 | A | C | false | distal | 324 | rs75998169 | 0.000611 | 0.030832 | 166.8 | intergenic_variant | dELS | ENSG00000073921 | 18,523 | ENSG00000073921 | 19,094 | 18,523 | ENSG00000073921 | dELS | ENSG00000073921 | 18,523 | ENSG00000073921 | 19,094 | 18,523 | ENSG00000073921 | distal | NA | NA | |
11 | 86,214,842 | C | A | false | distal | 397 | rs34471798 | 0.001438 | 0.094869 | 113.68 | intron_variant | pELS | ENSG00000074266 | 29,910 | ENSG00000276669 | 1,753 | 1,753 | ENSG00000276669 | pELS | ENSG00000074266 | 29,910 | ENSG00000276669 | 1,753 | 1,753 | ENSG00000276669 | distal | NA | NA | |
11 | 86,673,304 | G | C | false | tss_proximal | 381 | rs684365 | 0.000021 | 0.40294 | 148.11 | upstream_gene_variant | pELS_flank | ENSG00000151376 | 667 | ENSG00000151376 | 667 | 667 | ENSG00000151376 | tss_proximal | ENSG00000151376 | 667 | ENSG00000151376 | 667 | 667 | ENSG00000151376 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
11 | 86,706,462 | T | G | false | distal | 334 | rs77811314 | 0.000051 | 0.055704 | 136.03 | intron_variant | dELS | ENSG00000151376 | 33,825 | ENSG00000254731 | 3,334 | 3,334 | ENSG00000254731 | dELS | ENSG00000151376 | 33,825 | ENSG00000254731 | 3,362 | 3,362 | ENSG00000254731 | distal | NA | NA | |
11 | 86,833,068 | G | A | false | non_coding_transcript_exon_variant | 352 | rs61906680 | 0.000124 | 0.004888 | 9.548 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000150687 | 9,474 | ENSG00000197882 | 0 | 0 | ENSG00000197882 | non_coding_transcript_exon_variant | ENSG00000150687 | 32,525 | ENSG00000269895 | 0 | 0 | ENSG00000269895 | non_coding_transcript_exon_variant | NA | NA | |
11 | 86,833,202 | T | C | false | non_coding_transcript_exon_variant | 352 | rs201353686 | 0.000037 | 0.00444 | 20.119 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000150687 | 9,608 | ENSG00000197882 | 0 | 0 | ENSG00000197882 | non_coding_transcript_exon_variant | ENSG00000150687 | 32,659 | ENSG00000269895 | 133 | 133 | ENSG00000269895 | non_coding_transcript_exon_variant | NA | NA | |
11 | 86,914,935 | C | A | false | distal | 334 | rs17149520 | 0.000032 | 0.041276 | 38.758 | intron_variant | dELS | ENSG00000174804 | 30,743 | ENSG00000280339 | 2,696 | 2,696 | ENSG00000280339 | dELS | ENSG00000174804 | 40,459 | ENSG00000280339 | 2,696 | 2,696 | ENSG00000280339 | distal | NA | NA | |
11 | 86,942,946 | G | A | true | distal | 363 | rs149504726 | 1 | eBMD | 0.006674 | 16.972 | intron_variant | dELS_flank | ENSG00000174804 | 2,732 | ENSG00000150687 | 1,918 | 1,918 | ENSG00000150687 | dELS_flank | ENSG00000174804 | 12,448 | ENSG00000150687 | 2,159 | 2,159 | ENSG00000150687 | distal | NA | NA |
11 | 87,039,905 | G | A | false | distal | 346 | rs2513216 | 0.00029 | 0.19502 | 257.13 | intron_variant | pELS_flank | ENSG00000166575 | 1,718 | ENSG00000166575 | 1,718 | 1,718 | ENSG00000166575 | pELS_flank | ENSG00000166575 | 1,919 | ENSG00000166575 | 2,012 | 1,919 | ENSG00000166575 | distal | NA | NA | |
11 | 88,294,041 | T | C | false | missense_variant | 296 | rs3888798 | 0.000068 | 0.038389 | 81.442 | missense_variant | missense_variant | ENSG00000109861 | 0 | ENSG00000109861 | 0 | 0 | ENSG00000109861 | missense_variant | ENSG00000109861 | 43,680 | ENSG00000109861 | 15,321 | 15,321 | ENSG00000109861 | missense_variant | NA | NA | |
11 | 88,398,171 | C | T | false | distal | 323 | rs61901738 | 0.000028 | 0.24836 | 169.2 | intron_variant | dELS | ENSG00000109861 | 39,175 | ENSG00000249489 | 10,007 | 10,007 | ENSG00000249489 | dELS | ENSG00000109861 | 39,175 | ENSG00000249489 | 11,051 | 11,051 | ENSG00000249489 | distal | NA | NA | |
11 | 89,178,528 | C | A | false | missense_variant | 288 | rs1042602 | 0.0017 | 0.36659 | 376.34 | missense_variant | missense_variant | ENSG00000077498 | 0 | ENSG00000077498 | 0 | 0 | ENSG00000077498 | missense_variant | ENSG00000077498 | 652 | ENSG00000077498 | 634 | 634 | ENSG00000077498 | missense_variant | NA | NA | |
11 | 89,284,793 | G | A | true | missense_variant | 312 | rs1126809 | 0.99904 | SkC | 0.30556 | 372.63 | missense_variant | missense_variant | ENSG00000077498 | 0 | ENSG00000077498 | 0 | 0 | ENSG00000077498 | missense_variant | ENSG00000077498 | 106,917 | ENSG00000077498 | 1,025 | 1,025 | ENSG00000077498 | missense_variant | NA | NA |
11 | 89,490,885 | C | T | false | 5_prime_UTR_variant | 282 | rs56326837 | 0.000061 | 0.012922 | 26 | 5_prime_UTR_variant | 5_prime_UTR_variant | ENSG00000086991 | 0 | ENSG00000086991 | 304 | 0 | ENSG00000086991 | 5_prime_UTR_variant | ENSG00000086991 | 152 | ENSG00000086991 | 471 | 152 | ENSG00000086991 | 5_prime_UTR_variant | NA | NA | |
11 | 89,525,701 | T | A | false | distal | 372 | rs180929754 | 0.000022 | 0.00789 | 21.492 | intergenic_variant | intergenic_variant | ENSG00000086991 | 27,513 | ENSG00000279248 | 7,943 | 7,943 | ENSG00000279248 | intergenic_variant | ENSG00000086991 | 27,513 | ENSG00000279248 | 8,341 | 8,341 | ENSG00000279248 | distal | NA | NA | |
11 | 89,912,085 | C | T | false | splicing | 405 | rs199876662 | 0.000345 | 0.079408 | 159.6 | splice_region_variant | splice_region_variant | ENSG00000223417 | 0 | ENSG00000255055 | 3,037 | 0 | ENSG00000223417 | splice_region_variant | ENSG00000223417 | 8,342 | ENSG00000255055 | 3,544 | 3,544 | ENSG00000255055 | splicing | NA | splicing:b0 | |
11 | 92,225,190 | T | C | false | tss_proximal | 403 | rs191578811 | 0.000007 | 0.00962 | 13.333 | intron_variant | PLS_flank | ENSG00000165323 | 15 | ENSG00000242248 | 63,300 | 15 | ENSG00000165323 | tss_proximal | ENSG00000165323 | 371 | ENSG00000242248 | 64,083 | 371 | ENSG00000165323 | tss_proximal | tss_prox:b1 | tss_prox:b0 | |
11 | 92,391,029 | T | C | false | distal | 323 | rs649315 | 0.000017 | 0.23031 | 171.67 | intron_variant | dELS | ENSG00000165323 | 35,624 | ENSG00000254705 | 9,161 | 9,161 | ENSG00000254705 | dELS | ENSG00000165323 | 38,932 | ENSG00000254705 | 17,146 | 17,146 | ENSG00000254705 | distal | NA | NA | |
11 | 92,946,032 | C | T | false | distal | 361 | rs2121649 | 0.002103 | 0.39212 | 82.76 | intergenic_variant | dELS_flank | ENSG00000134640 | 23,618 | ENSG00000255287 | 8,365 | 8,365 | ENSG00000255287 | dELS_flank | ENSG00000134640 | 23,618 | ENSG00000255287 | 8,590 | 8,590 | ENSG00000255287 | distal | NA | NA | |
11 | 92,975,544 | C | G | true | distal | 402 | rs10830963 | 1 | HbA1c | 0.27526 | 65.199 | intron_variant | CA-TF | ENSG00000134640 | 5,595 | ENSG00000134640 | 2,952 | 2,952 | ENSG00000134640 | CA-TF | ENSG00000134640 | 5,759 | ENSG00000134640 | 5,817 | 5,759 | ENSG00000134640 | distal | NA | NA |
11 | 92,984,961 | G | C | false | missense_variant | 314 | rs1447350 | 0.000122 | 0.48868 | 80.101 | missense_variant | missense_variant | ENSG00000134640 | 0 | ENSG00000134640 | 2,648 | 0 | ENSG00000134640 | missense_variant | ENSG00000134640 | 15,176 | ENSG00000134640 | 15,234 | 15,176 | ENSG00000134640 | missense_variant | NA | NA | |
11 | 93,146,117 | T | G | false | 3_prime_UTR_variant | 394 | rs11020179 | 0.000067 | 0.29604 | 127.54 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000180773 | 0 | ENSG00000180773 | 2,030 | 0 | ENSG00000180773 | 3_prime_UTR_variant | ENSG00000180773 | 36,776 | ENSG00000255445 | 5,957 | 5,957 | ENSG00000255445 | 3_prime_UTR_variant | NA | NA | |
11 | 93,146,213 | C | T | false | 3_prime_UTR_variant | 394 | rs7939448 | 0.00008 | 0.29563 | 127.75 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000180773 | 0 | ENSG00000180773 | 1,934 | 0 | ENSG00000180773 | 3_prime_UTR_variant | ENSG00000180773 | 36,680 | ENSG00000255445 | 5,861 | 5,861 | ENSG00000255445 | 3_prime_UTR_variant | NA | NA | |
11 | 93,147,028 | T | A | false | 3_prime_UTR_variant | 394 | rs7110304 | 0.000045 | 0.32233 | 105.66 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000180773 | 0 | ENSG00000180773 | 1,119 | 0 | ENSG00000180773 | 3_prime_UTR_variant | ENSG00000180773 | 35,865 | ENSG00000255445 | 5,046 | 5,046 | ENSG00000255445 | 3_prime_UTR_variant | NA | NA | |
11 | 93,162,754 | T | C | false | missense_variant | 308 | rs78676517 | 0.000225 | 0.061909 | 189.48 | missense_variant | missense_variant | ENSG00000180773 | 0 | ENSG00000180773 | 0 | 0 | ENSG00000180773 | missense_variant | ENSG00000180773 | 20,139 | ENSG00000180773 | 4,775 | 4,775 | ENSG00000180773 | missense_variant | NA | NA | |
11 | 93,393,562 | T | A | false | distal | 327 | rs11020301 | 0.000066 | 0.25162 | 203.35 | intron_variant | dELS | ENSG00000165325 | 896 | ENSG00000165325 | 894 | 894 | ENSG00000165325 | dELS | ENSG00000165325 | 10,093 | ENSG00000165325 | 17,496 | 10,093 | ENSG00000165325 | distal | NA | NA | |
11 | 93,396,727 | T | C | false | distal | 326 | rs11020303 | 0.000065 | 0.25166 | 203.33 | intron_variant | dELS | ENSG00000165325 | 359 | ENSG00000165325 | 401 | 359 | ENSG00000165325 | dELS | ENSG00000165325 | 13,258 | ENSG00000165325 | 14,331 | 13,258 | ENSG00000165325 | distal | NA | NA | |
11 | 93,482,830 | G | A | false | distal | 335 | rs34825570 | 0.000059 | 0.16932 | 123.62 | intron_variant | dELS | ENSG00000166002 | 3,545 | ENSG00000165325 | 44,342 | 3,545 | ENSG00000166002 | dELS | ENSG00000166002 | 3,640 | ENSG00000234106 | 52,637 | 3,640 | ENSG00000166002 | distal | NA | NA | |
11 | 93,483,298 | G | A | false | distal | 335 | rs66464546 | 0.00006 | 0.16961 | 124.19 | intron_variant | dELS | ENSG00000166002 | 4,013 | ENSG00000165325 | 44,810 | 4,013 | ENSG00000166002 | dELS | ENSG00000166002 | 4,108 | ENSG00000234106 | 52,169 | 4,108 | ENSG00000166002 | distal | NA | NA | |
11 | 93,483,336 | G | C | false | distal | 335 | rs75988917 | 0.000066 | 0.15334 | 109.26 | intron_variant | dELS | ENSG00000166002 | 4,051 | ENSG00000165325 | 44,848 | 4,051 | ENSG00000166002 | dELS | ENSG00000166002 | 4,146 | ENSG00000234106 | 52,131 | 4,146 | ENSG00000166002 | distal | NA | NA | |
11 | 93,747,024 | C | A | false | 5_prime_UTR_variant | 280 | rs595650 | 0.000159 | 0.37573 | 221.88 | 5_prime_UTR_variant | 5_prime_UTR_variant | ENSG00000182919 | 0 | ENSG00000182919 | 4,270 | 0 | ENSG00000182919 | 5_prime_UTR_variant | ENSG00000182919 | 538 | ENSG00000182919 | 5,427 | 538 | ENSG00000182919 | 5_prime_UTR_variant | NA | NA | |
11 | 93,784,720 | G | C | false | missense_variant | 288 | rs2848477 | 0.000122 | 0.37095 | 219.2 | missense_variant | missense_variant | ENSG00000042429 | 0 | ENSG00000042429 | 0 | 0 | ENSG00000042429 | missense_variant | ENSG00000042429 | 221 | ENSG00000042429 | 28 | 28 | ENSG00000042429 | missense_variant | NA | NA | |
11 | 93,806,835 | G | A | false | non_coding_transcript_exon_variant | 354 | rs673869 | 0.000111 | 0.37401 | 220.11 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000284057 | 682 | ENSG00000042429 | 0 | 0 | ENSG00000042429 | non_coding_transcript_exon_variant | ENSG00000042429 | 22,336 | ENSG00000042429 | 733 | 733 | ENSG00000042429 | non_coding_transcript_exon_variant | NA | NA | |
11 | 93,811,860 | T | C | false | missense_variant | 295 | rs138934738 | 0.000122 | 0.001384 | 11.823 | missense_variant | missense_variant | ENSG00000042429 | 0 | ENSG00000042429 | 0 | 0 | ENSG00000042429 | missense_variant | ENSG00000042429 | 27,361 | ENSG00000042429 | 5,758 | 5,758 | ENSG00000042429 | missense_variant | NA | NA | |
11 | 94,129,519 | A | G | true | tss_proximal | 403 | rs138436783 | 1 | ALT,AST | 0.022572 | 34.411 | intron_variant | pELS | ENSG00000110218 | 25 | ENSG00000250519 | 55,919 | 25 | ENSG00000110218 | tss_proximal | ENSG00000110218 | 589 | ENSG00000250519 | 55,919 | 589 | ENSG00000110218 | tss_proximal | tss_prox:b1 | tss_prox:b0 |
11 | 94,398,391 | C | A | true | distal | 335 | rs12796488 | 1 | Testosterone_M | 0.17651 | 120.13 | intron_variant | dELS | ENSG00000123901 | 1,866 | ENSG00000020922 | 47,347 | 1,866 | ENSG00000123901 | dELS | ENSG00000123901 | 3,000 | ENSG00000020922 | 48,908 | 3,000 | ENSG00000123901 | distal | NA | NA |
11 | 94,400,774 | C | T | false | tss_proximal | 403 | rs35814524 | 0.000194 | 0.008121 | 138.78 | intron_variant | pELS | ENSG00000123901 | 86 | ENSG00000020922 | 44,964 | 86 | ENSG00000123901 | tss_proximal | ENSG00000123901 | 617 | ENSG00000020922 | 46,525 | 617 | ENSG00000123901 | tss_proximal | tss_prox:b1 | tss_prox:b0 | |
11 | 94,591,299 | C | T | false | distal | 321 | rs7111719 | 0.000074 | 0.29558 | 197.38 | intron_variant | dELS | ENSG00000134627 | 2,066 | ENSG00000134627 | 2,066 | 2,066 | ENSG00000134627 | dELS | ENSG00000134627 | 23,607 | ENSG00000280167 | 32,280 | 23,607 | ENSG00000134627 | distal | NA | NA | |
11 | 94,643,425 | T | C | false | distal | 397 | rs34839308 | 0.000367 | 0.11104 | 64.906 | intron_variant | pELS | ENSG00000134627 | 22,003 | ENSG00000255666 | 544 | 544 | ENSG00000255666 | pELS | ENSG00000134627 | 25,635 | ENSG00000255666 | 1,494 | 1,494 | ENSG00000255666 | distal | NA | NA | |
11 | 94,740,968 | C | G | false | missense_variant | 308 | rs72971737 | 0.000087 | 0.043461 | 30.967 | missense_variant | missense_variant | ENSG00000166025 | 0 | ENSG00000255929 | 612 | 0 | ENSG00000166025 | missense_variant | ENSG00000166025 | 27,373 | ENSG00000255929 | 612 | 612 | ENSG00000255929 | missense_variant | NA | NA | |
11 | 94,895,898 | C | T | false | distal | 364 | rs11602420 | 0.000119 | 0.15715 | 24.251 | intron_variant | dELS_flank | ENSG00000166025 | 19,149 | ENSG00000213368 | 17,148 | 17,148 | ENSG00000213368 | dELS_flank | ENSG00000150316 | 77,657 | ENSG00000213368 | 17,148 | 17,148 | ENSG00000213368 | distal | NA | NA | |
11 | 94,963,263 | G | A | false | 3_prime_UTR_variant | 392 | rs75365808 | 0.000006 | 0.026643 | 14.138 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000150316 | 0 | ENSG00000150316 | 78 | 0 | ENSG00000150316 | 3_prime_UTR_variant | ENSG00000150316 | 10,292 | ENSG00000150316 | 6,991 | 6,991 | ENSG00000150316 | 3_prime_UTR_variant | NA | NA | |
11 | 95,075,551 | T | C | false | distal | 322 | rs684804 | 0.000135 | 0.26889 | 72.75 | intergenic_variant | dELS | ENSG00000263465 | 4,325 | ENSG00000263465 | 6,462 | 4,325 | ENSG00000263465 | dELS | ENSG00000263465 | 8,631 | ENSG00000263465 | 7,492 | 7,492 | ENSG00000263465 | distal | NA | NA | |
11 | 95,134,569 | T | C | false | distal | 343 | rs511248 | 0.005601 | 0.47451 | 54.051 | intergenic_variant | dELS | ENSG00000149218 | 1,923 | ENSG00000270689 | 9,067 | 1,923 | ENSG00000149218 | dELS | ENSG00000149218 | 44,722 | ENSG00000270689 | 9,067 | 9,067 | ENSG00000270689 | distal | NA | NA | |
11 | 95,153,299 | G | A | false | distal | 400 | rs533856 | 0.000148 | 0.41437 | 52.095 | intron_variant | pELS | ENSG00000149212 | 12,213 | ENSG00000245552 | 33 | 33 | ENSG00000245552 | pELS | ENSG00000149218 | 63,452 | ENSG00000245552 | 1,519 | 1,519 | ENSG00000245552 | distal | NA | NA | |
11 | 95,153,468 | T | C | true | distal | 400 | rs496321 | 0.999995 | MCH,MCV | 0.3852 | 43.321 | intron_variant | pELS | ENSG00000149212 | 12,044 | ENSG00000245552 | 202 | 202 | ENSG00000245552 | pELS | ENSG00000149218 | 63,621 | ENSG00000245552 | 1,688 | 1,688 | ENSG00000245552 | distal | NA | NA |
11 | 95,153,714 | G | C | false | distal | 397 | rs472408 | 0.000681 | 0.07289 | 22.464 | intron_variant | pELS | ENSG00000149212 | 11,798 | ENSG00000245552 | 448 | 448 | ENSG00000245552 | pELS | ENSG00000149218 | 63,867 | ENSG00000245552 | 1,934 | 1,934 | ENSG00000245552 | distal | NA | NA | |
11 | 95,645,409 | A | G | false | distal | 336 | rs528837415 | 0.000086 | 0.004142 | 8.8911 | intron_variant | dELS | ENSG00000077458 | 123,543 | ENSG00000255605 | 52,676 | 52,676 | ENSG00000255605 | dELS | ENSG00000077458 | 141,395 | ENSG00000255605 | 52,676 | 52,676 | ENSG00000255605 | distal | NA | NA | |
11 | 95,647,391 | A | G | false | distal | 336 | rs76703017 | 0.000006 | 0.00025 | 9.2781 | intron_variant | dELS | ENSG00000077458 | 121,561 | ENSG00000255605 | 50,694 | 50,694 | ENSG00000255605 | dELS | ENSG00000077458 | 139,413 | ENSG00000255605 | 50,694 | 50,694 | ENSG00000255605 | distal | NA | NA | |
11 | 95,647,590 | T | A | true | distal | 336 | rs73519353 | 0.999985 | SHBG | 0.003321 | 7.3225 | intron_variant | dELS | ENSG00000077458 | 121,362 | ENSG00000255605 | 50,495 | 50,495 | ENSG00000255605 | dELS | ENSG00000077458 | 139,214 | ENSG00000255605 | 50,495 | 50,495 | ENSG00000255605 | distal | NA | NA |
11 | 95,647,590 | T | C | false | distal | 336 | rs73519353 | 0.000141 | 0.024885 | 93.949 | intron_variant | dELS | ENSG00000077458 | 121,362 | ENSG00000255605 | 50,495 | 50,495 | ENSG00000255605 | dELS | ENSG00000077458 | 139,214 | ENSG00000255605 | 50,495 | 50,495 | ENSG00000255605 | distal | NA | NA | |
11 | 95,647,642 | T | C | false | distal | 336 | rs73519357 | 0.000165 | 0.025081 | 93.505 | intron_variant | dELS | ENSG00000077458 | 121,310 | ENSG00000255605 | 50,443 | 50,443 | ENSG00000255605 | dELS | ENSG00000077458 | 139,162 | ENSG00000255605 | 50,443 | 50,443 | ENSG00000255605 | distal | NA | NA | |
11 | 95,649,988 | G | A | false | distal | 336 | rs1893684 | 0.000016 | 0.000137 | 12.149 | intron_variant | dELS | ENSG00000077458 | 118,964 | ENSG00000255605 | 48,097 | 48,097 | ENSG00000255605 | dELS | ENSG00000077458 | 136,816 | ENSG00000255605 | 48,097 | 48,097 | ENSG00000255605 | distal | NA | NA | |
11 | 95,650,001 | C | T | false | distal | 329 | rs145633519 | 0.000241 | 0.01551 | 15.947 | intron_variant | dELS | ENSG00000077458 | 118,951 | ENSG00000255605 | 48,084 | 48,084 | ENSG00000255605 | dELS | ENSG00000077458 | 136,803 | ENSG00000255605 | 48,084 | 48,084 | ENSG00000255605 | distal | NA | NA | |
11 | 95,650,059 | T | C | false | distal | 329 | rs117635503 | 0.000139 | 0.024583 | 93.768 | intron_variant | dELS | ENSG00000077458 | 118,893 | ENSG00000255605 | 48,026 | 48,026 | ENSG00000255605 | dELS | ENSG00000077458 | 136,745 | ENSG00000255605 | 48,026 | 48,026 | ENSG00000255605 | distal | NA | NA | |
11 | 95,653,841 | C | A | false | distal | 329 | rs59909066 | 0.000157 | 0.024775 | 93.439 | intron_variant | dELS | ENSG00000077458 | 115,111 | ENSG00000255605 | 44,244 | 44,244 | ENSG00000255605 | dELS | ENSG00000077458 | 132,963 | ENSG00000255605 | 44,244 | 44,244 | ENSG00000255605 | distal | NA | NA | |
11 | 95,653,856 | G | T | false | distal | 329 | rs59152834 | 0.000154 | 0.024816 | 93.295 | intron_variant | dELS | ENSG00000077458 | 115,096 | ENSG00000255605 | 44,229 | 44,229 | ENSG00000255605 | dELS | ENSG00000077458 | 132,948 | ENSG00000255605 | 44,229 | 44,229 | ENSG00000255605 | distal | NA | NA | |
11 | 95,655,220 | A | G | false | distal | 328 | rs7105177 | 0.000194 | 0.47582 | 118.02 | intron_variant | dELS | ENSG00000077458 | 113,732 | ENSG00000255605 | 42,865 | 42,865 | ENSG00000255605 | dELS | ENSG00000077458 | 131,584 | ENSG00000255605 | 42,865 | 42,865 | ENSG00000255605 | distal | NA | NA | |
11 | 95,757,100 | G | A | false | non_coding_transcript_exon_variant | 352 | rs148091121 | 0.002212 | 0.011694 | 26.684 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000077458 | 11,852 | ENSG00000273600 | 0 | 0 | ENSG00000273600 | non_coding_transcript_exon_variant | ENSG00000077458 | 29,704 | ENSG00000273600 | 341 | 341 | ENSG00000273600 | non_coding_transcript_exon_variant | NA | NA | |
11 | 95,832,676 | G | A | false | 3_prime_UTR_variant | 392 | rs12275165 | 0.000059 | 0.027571 | 80.336 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000166037 | 0 | ENSG00000087053 | 205 | 0 | ENSG00000166037 | 3_prime_UTR_variant | ENSG00000166037 | 14,838 | ENSG00000166037 | 6,992 | 6,992 | ENSG00000166037 | 3_prime_UTR_variant | NA | NA | |
11 | 95,832,884 | G | A | false | 3_prime_UTR_variant | 392 | rs16922613 | 0.000046 | 0.019607 | 14.215 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000087053 | 0 | ENSG00000087053 | 0 | 0 | ENSG00000087053 | 3_prime_UTR_variant | ENSG00000166037 | 15,046 | ENSG00000166037 | 7,200 | 7,200 | ENSG00000166037 | 3_prime_UTR_variant | NA | NA | |
11 | 95,833,338 | C | T | false | 3_prime_UTR_variant | 392 | rs118033833 | 0.000528 | 0.020159 | 92.161 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000087053 | 0 | ENSG00000087053 | 0 | 0 | ENSG00000087053 | 3_prime_UTR_variant | ENSG00000166037 | 15,500 | ENSG00000222578 | 6,785 | 6,785 | ENSG00000222578 | 3_prime_UTR_variant | NA | NA | |
11 | 95,963,550 | A | G | false | non_coding_transcript_exon_variant | 352 | rs146044837 | 0.000125 | 0.00712 | 15.585 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000184384 | 13,047 | ENSG00000242993 | 0 | 0 | ENSG00000242993 | non_coding_transcript_exon_variant | ENSG00000087053 | 39,426 | ENSG00000242993 | 330 | 330 | ENSG00000242993 | non_coding_transcript_exon_variant | NA | NA | |
11 | 96,092,888 | C | A | false | missense_variant | 300 | rs201509772 | 0.000065 | 0.000544 | 3.1153 | missense_variant | missense_variant | ENSG00000184384 | 0 | ENSG00000285921 | 0 | 0 | ENSG00000184384 | missense_variant | ENSG00000184384 | 631 | ENSG00000285921 | 513 | 513 | ENSG00000285921 | missense_variant | NA | NA | |
11 | 96,325,081 | C | T | false | distal | 337 | rs4753195 | 0.000073 | 0.03968 | 42.411 | intron_variant | dELS | ENSG00000184384 | 16,301 | ENSG00000266192 | 16,356 | 16,301 | ENSG00000184384 | dELS | ENSG00000184384 | 18,113 | ENSG00000266192 | 16,356 | 16,356 | ENSG00000266192 | distal | NA | NA | |
11 | 96,325,139 | G | A | true | distal | 337 | rs11021537 | 0.993395 | NAP,TP | 0.038286 | 30.613 | intron_variant | dELS | ENSG00000184384 | 16,243 | ENSG00000266192 | 16,298 | 16,243 | ENSG00000184384 | dELS | ENSG00000184384 | 18,055 | ENSG00000266192 | 16,298 | 16,298 | ENSG00000266192 | distal | NA | NA |
11 | 96,325,796 | C | T | false | distal | 337 | rs79038632 | 0.000072 | 0.037847 | 42.654 | intron_variant | dELS | ENSG00000184384 | 15,586 | ENSG00000266192 | 15,641 | 15,586 | ENSG00000184384 | dELS | ENSG00000184384 | 17,398 | ENSG00000266192 | 15,641 | 15,641 | ENSG00000266192 | distal | NA | NA | |
11 | 96,341,369 | A | C | false | tss_proximal | 404 | rs117349218 | 0.000539 | 0.023717 | 55.881 | intron_variant | PLS_flank | ENSG00000184384 | 13 | ENSG00000266192 | 68 | 13 | ENSG00000184384 | tss_proximal | ENSG00000184384 | 1,825 | ENSG00000266192 | 68 | 68 | ENSG00000266192 | tss_proximal | tss_prox:b2 | tss_prox:b0 | |
11 | 99,169,231 | T | C | false | distal | 328 | rs4754589 | 0.000007 | 0.44257 | 189.15 | intron_variant | dELS | ENSG00000149972 | 147,960 | ENSG00000223269 | 48,740 | 48,740 | ENSG00000223269 | dELS | ENSG00000149972 | 148,040 | ENSG00000223269 | 49,054 | 49,054 | ENSG00000223269 | distal | NA | NA | |
11 | 99,169,299 | A | G | false | distal | 328 | rs4754590 | 0.000007 | 0.44257 | 189.15 | intron_variant | dELS | ENSG00000149972 | 148,028 | ENSG00000223269 | 48,808 | 48,808 | ENSG00000223269 | dELS | ENSG00000149972 | 148,108 | ENSG00000223269 | 49,122 | 49,122 | ENSG00000223269 | distal | NA | NA | |
11 | 99,170,390 | T | C | false | distal | 329 | rs72994348 | 0.00001 | 0.03603 | 41.579 | intron_variant | dELS | ENSG00000149972 | 149,119 | ENSG00000223269 | 49,899 | 49,899 | ENSG00000223269 | dELS | ENSG00000149972 | 149,199 | ENSG00000223269 | 50,213 | 50,213 | ENSG00000223269 | distal | NA | NA | |
11 | 99,170,405 | G | C | false | distal | 328 | rs12805219 | 0.000037 | 0.47683 | 171.13 | intron_variant | dELS | ENSG00000149972 | 149,134 | ENSG00000223269 | 49,914 | 49,914 | ENSG00000223269 | dELS | ENSG00000149972 | 149,214 | ENSG00000223269 | 50,228 | 50,228 | ENSG00000223269 | distal | NA | NA | |
11 | 100,678,806 | A | G | false | distal | 370 | rs4754692 | 0.000522 | 0.49332 | 164.05 | intergenic_variant | intergenic_variant | ENSG00000165895 | 8,481 | ENSG00000248027 | 5,355 | 5,355 | ENSG00000248027 | intergenic_variant | ENSG00000165895 | 8,481 | ENSG00000248027 | 9,148 | 8,481 | ENSG00000165895 | distal | NA | NA | |
11 | 100,704,413 | G | A | false | distal | 337 | rs73003812 | 0.000227 | 0.035193 | 36.698 | intron_variant | dELS | ENSG00000165895 | 16,580 | ENSG00000248027 | 16,457 | 16,457 | ENSG00000248027 | dELS | ENSG00000165895 | 16,759 | ENSG00000248027 | 16,457 | 16,457 | ENSG00000248027 | distal | NA | NA | |
11 | 100,705,846 | C | T | false | distal | 338 | rs111587068 | 0.000752 | 0.032026 | 106.47 | intron_variant | dELS | ENSG00000165895 | 18,013 | ENSG00000248027 | 17,890 | 17,890 | ENSG00000248027 | dELS | ENSG00000165895 | 18,192 | ENSG00000248027 | 17,890 | 17,890 | ENSG00000248027 | distal | NA | NA | |
11 | 100,862,041 | A | G | false | distal | 356 | rs618663 | 0.000588 | 0.31623 | 97.378 | intron_variant | dELS_flank | ENSG00000165895 | 2,415 | ENSG00000165895 | 2,133 | 2,133 | ENSG00000165895 | dELS_flank | ENSG00000165895 | 51,458 | ENSG00000200047 | 22,410 | 22,410 | ENSG00000200047 | distal | NA | NA | |
11 | 100,863,279 | G | A | false | distal | 356 | rs12274135 | 0.000453 | 0.30317 | 98.42 | intron_variant | dELS_flank | ENSG00000165895 | 3,653 | ENSG00000165895 | 3,371 | 3,371 | ENSG00000165895 | dELS_flank | ENSG00000165895 | 50,220 | ENSG00000200047 | 23,648 | 23,648 | ENSG00000200047 | distal | NA | NA | |
11 | 101,096,324 | A | G | false | distal | 321 | rs578938 | 0.000024 | 0.31551 | 118.15 | intron_variant | dELS | ENSG00000082175 | 4,447 | ENSG00000082175 | 4,447 | 4,447 | ENSG00000082175 | dELS | ENSG00000082175 | 30,763 | ENSG00000082175 | 32,298 | 30,763 | ENSG00000082175 | distal | NA | NA | |
11 | 101,253,456 | G | A | false | distal | 329 | rs61892350 | 0.000017 | 0.016385 | 20.673 | intergenic_variant | dELS | ENSG00000082175 | 123,642 | ENSG00000282728 | 43,864 | 43,864 | ENSG00000282728 | dELS | ENSG00000082175 | 123,642 | ENSG00000255504 | 44,550 | 44,550 | ENSG00000255504 | distal | NA | NA | |
11 | 101,510,186 | C | A | false | distal | 343 | rs10750606 | 0.000309 | 0.48762 | 276.71 | intron_variant | dELS | ENSG00000137672 | 5,387 | ENSG00000137672 | 5,387 | 5,387 | ENSG00000137672 | dELS | ENSG00000137672 | 73,316 | ENSG00000137672 | 6,095 | 6,095 | ENSG00000137672 | distal | NA | NA | |
11 | 101,510,242 | A | G | false | distal | 343 | rs7109127 | 0.000288 | 0.48723 | 276.41 | intron_variant | dELS | ENSG00000137672 | 5,443 | ENSG00000137672 | 5,443 | 5,443 | ENSG00000137672 | dELS | ENSG00000137672 | 73,260 | ENSG00000137672 | 6,151 | 6,151 | ENSG00000137672 | distal | NA | NA | |
11 | 101,510,709 | T | C | false | distal | 343 | rs7115999 | 0.0003 | 0.48772 | 276.79 | intron_variant | dELS | ENSG00000137672 | 5,910 | ENSG00000137672 | 5,910 | 5,910 | ENSG00000137672 | dELS | ENSG00000137672 | 72,793 | ENSG00000137672 | 6,618 | 6,618 | ENSG00000137672 | distal | NA | NA | |
11 | 101,511,210 | T | G | false | distal | 343 | rs7116629 | 0.000305 | 0.48765 | 276.75 | intron_variant | dELS | ENSG00000137672 | 6,411 | ENSG00000137672 | 6,411 | 6,411 | ENSG00000137672 | dELS | ENSG00000137672 | 72,292 | ENSG00000137672 | 7,119 | 7,119 | ENSG00000137672 | distal | NA | NA | |
11 | 101,511,294 | G | A | false | distal | 343 | rs7127243 | 0.000304 | 0.48765 | 276.74 | intron_variant | dELS | ENSG00000137672 | 6,495 | ENSG00000137672 | 6,495 | 6,495 | ENSG00000137672 | dELS | ENSG00000137672 | 72,208 | ENSG00000137672 | 7,203 | 7,203 | ENSG00000137672 | distal | NA | NA | |
11 | 101,511,378 | C | T | false | distal | 343 | rs7128289 | 0.000304 | 0.48759 | 276.73 | intron_variant | dELS | ENSG00000137672 | 6,579 | ENSG00000137672 | 6,579 | 6,579 | ENSG00000137672 | dELS | ENSG00000137672 | 72,124 | ENSG00000137672 | 7,287 | 7,287 | ENSG00000137672 | distal | NA | NA | |
11 | 101,717,860 | A | G | false | distal | 336 | rs58850793 | 0.000029 | 0.003232 | 30.072 | intron_variant | dELS | ENSG00000137672 | 133,852 | ENSG00000254534 | 48,074 | 48,074 | ENSG00000254534 | dELS | ENSG00000137672 | 133,852 | ENSG00000254534 | 52,100 | 52,100 | ENSG00000254534 | distal | NA | NA | |
11 | 101,717,863 | A | T | false | distal | 329 | rs10895182 | 0.000034 | 0.043043 | 62.944 | intron_variant | dELS | ENSG00000137672 | 133,855 | ENSG00000254534 | 48,071 | 48,071 | ENSG00000254534 | dELS | ENSG00000137672 | 133,855 | ENSG00000254534 | 52,097 | 52,097 | ENSG00000254534 | distal | NA | NA | |
11 | 101,718,502 | C | G | false | distal | 328 | rs10791520 | 0.000063 | 0.46749 | 265.93 | intron_variant | dELS | ENSG00000137672 | 134,494 | ENSG00000254534 | 47,432 | 47,432 | ENSG00000254534 | dELS | ENSG00000137672 | 134,494 | ENSG00000254534 | 51,458 | 51,458 | ENSG00000254534 | distal | NA | NA | |
11 | 101,721,303 | C | G | false | distal | 329 | rs77693937 | 0.00005 | 0.033524 | 64.391 | intron_variant | dELS | ENSG00000137672 | 137,295 | ENSG00000254534 | 44,631 | 44,631 | ENSG00000254534 | dELS | ENSG00000137672 | 137,295 | ENSG00000254534 | 48,657 | 48,657 | ENSG00000254534 | distal | NA | NA | |
11 | 101,723,620 | A | G | false | distal | 329 | rs10895186 | 0.000111 | 0.049628 | 67.369 | intron_variant | dELS | ENSG00000137672 | 139,612 | ENSG00000254534 | 42,314 | 42,314 | ENSG00000254534 | dELS | ENSG00000137672 | 139,612 | ENSG00000254534 | 46,340 | 46,340 | ENSG00000254534 | distal | NA | NA | |
11 | 101,907,979 | A | G | false | 5_prime_UTR_variant | 280 | rs1661410 | 0.000314 | 0.41069 | 176.88 | 5_prime_UTR_variant | 5_prime_UTR_variant | ENSG00000187151 | 0 | ENSG00000110318 | 7,032 | 0 | ENSG00000187151 | 5_prime_UTR_variant | ENSG00000187151 | 44 | ENSG00000110318 | 7,032 | 44 | ENSG00000187151 | 5_prime_UTR_variant | NA | NA |
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