chrom stringclasses 12
values | pos int64 36.1k 249M | ref stringclasses 4
values | alt stringclasses 4
values | label bool 2
classes | subset stringclasses 8
values | match_group int64 0 2.16k | rsid stringlengths 3 15 | pip float64 0 1 | traits stringclasses 279
values | MAF float64 0 0.5 | ld_score float64 1.01 3.79k | consequence stringclasses 13
values | consequence_cre stringclasses 29
values | exon_closest_pc_gene_id stringlengths 15 15 | distance_exon_pc int64 0 1.68M | exon_closest_nc_gene_id stringlengths 15 15 | distance_exon_nc int64 0 507k | distance_exon int64 0 507k | exon_closest_gene_id stringlengths 15 15 | consequence_final stringclasses 28
values | tss_closest_pc_gene_id stringlengths 15 15 | distance_tss_pc int64 0 1.69M | tss_closest_nc_gene_id stringlengths 15 15 | distance_tss_nc int64 0 531k | distance_tss int64 0 531k | tss_closest_gene_id stringlengths 15 15 | consequence_group stringclasses 8
values | distance_tss_pc_bin stringclasses 4
values | distance_exon_pc_bin stringclasses 7
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
19 | 9,058,736 | G | A | false | distal | 1,047 | rs112251659 | 0.000035 | 0.23596 | 148.62 | intergenic_variant | dELS_flank | ENSG00000170929 | 28,324 | ENSG00000267154 | 24,375 | 24,375 | ENSG00000267154 | dELS_flank | ENSG00000170929 | 28,324 | ENSG00000267154 | 24,661 | 24,661 | ENSG00000267154 | distal | NA | NA | |
19 | 9,059,288 | G | A | false | distal | 1,047 | rs73499549 | 0.000035 | 0.23596 | 148.63 | intergenic_variant | dELS_flank | ENSG00000170929 | 27,772 | ENSG00000267154 | 23,823 | 23,823 | ENSG00000267154 | dELS_flank | ENSG00000170929 | 27,772 | ENSG00000267154 | 24,109 | 24,109 | ENSG00000267154 | distal | NA | NA | |
19 | 9,059,620 | C | G | false | distal | 1,047 | rs76111568 | 0.000035 | 0.23594 | 148.64 | intergenic_variant | dELS_flank | ENSG00000170929 | 27,440 | ENSG00000267154 | 23,491 | 23,491 | ENSG00000267154 | dELS_flank | ENSG00000170929 | 27,440 | ENSG00000267154 | 23,777 | 23,777 | ENSG00000267154 | distal | NA | NA | |
19 | 9,060,737 | G | A | false | distal | 1,086 | rs139281544 | 0.000073 | 0.023258 | 16.152 | intergenic_variant | dELS | ENSG00000170929 | 26,323 | ENSG00000267154 | 22,374 | 22,374 | ENSG00000267154 | dELS | ENSG00000170929 | 26,323 | ENSG00000267154 | 22,660 | 22,660 | ENSG00000267154 | distal | NA | NA | |
19 | 9,160,729 | T | G | false | missense_variant | 1,029 | rs190579912 | 0.000048 | 0.009083 | 22.36 | missense_variant | missense_variant | ENSG00000130803 | 0 | ENSG00000130803 | 0 | 0 | ENSG00000130803 | missense_variant | ENSG00000130803 | 2,656 | ENSG00000130803 | 4,716 | 2,656 | ENSG00000130803 | missense_variant | NA | NA | |
19 | 9,160,885 | G | A | false | missense_variant | 1,029 | rs138057564 | 0.000069 | 0.00943 | 12.618 | missense_variant | missense_variant | ENSG00000130803 | 0 | ENSG00000130803 | 0 | 0 | ENSG00000130803 | missense_variant | ENSG00000130803 | 2,812 | ENSG00000130803 | 4,872 | 2,812 | ENSG00000130803 | missense_variant | NA | NA | |
19 | 9,186,705 | A | C | false | synonymous_variant | 1,063 | rs61733545 | 0.000046 | 0.042742 | 31.446 | synonymous_variant | synonymous_variant | ENSG00000188000 | 0 | ENSG00000267418 | 3,656 | 0 | ENSG00000188000 | synonymous_variant | ENSG00000188000 | 1,110 | ENSG00000267418 | 3,656 | 1,110 | ENSG00000188000 | synonymous_variant | NA | NA | |
19 | 9,214,440 | G | A | false | missense_variant | 1,023 | rs5020278 | 0.000095 | 0.17058 | 70.205 | missense_variant | missense_variant | ENSG00000174667 | 0 | ENSG00000187847 | 4,372 | 0 | ENSG00000174667 | missense_variant | ENSG00000174667 | 430 | ENSG00000187847 | 10,134 | 430 | ENSG00000174667 | missense_variant | NA | NA | |
19 | 9,308,327 | A | C | false | distal | 1,122 | rs61199015 | 0.000393 | 0.10209 | 397.42 | intron_variant | TF | ENSG00000196110 | 1,022 | ENSG00000196110 | 1,022 | 1,022 | ENSG00000196110 | TF | ENSG00000196110 | 1,510 | ENSG00000196110 | 1,510 | 1,510 | ENSG00000196110 | distal | NA | NA | |
19 | 9,312,275 | T | C | false | distal | 1,068 | rs118161467 | 0.000791 | 0.074116 | 391.83 | intergenic_variant | dELS | ENSG00000196110 | 2,436 | ENSG00000196110 | 2,436 | 2,436 | ENSG00000196110 | dELS | ENSG00000196110 | 2,436 | ENSG00000196110 | 2,436 | 2,436 | ENSG00000196110 | distal | NA | NA | |
19 | 9,342,203 | C | A | false | missense_variant | 1,018 | rs16979670 | 0.000064 | 0.010175 | 204.57 | missense_variant | missense_variant | ENSG00000188321 | 0 | ENSG00000270011 | 1,018 | 0 | ENSG00000188321 | missense_variant | ENSG00000188321 | 2,946 | ENSG00000270614 | 6,499 | 2,946 | ENSG00000188321 | missense_variant | NA | NA | |
19 | 9,380,138 | C | T | false | missense_variant | 1,037 | rs2217652 | 0.001083 | 0.41277 | 476.62 | missense_variant | missense_variant | ENSG00000188629 | 0 | ENSG00000270011 | 5 | 0 | ENSG00000188629 | missense_variant | ENSG00000188629 | 1,868 | ENSG00000283108 | 26,916 | 1,868 | ENSG00000188629 | missense_variant | NA | NA | |
19 | 9,382,521 | T | C | false | 3_prime_UTR_variant | 1,104 | rs6512089 | 0.001038 | 0.41278 | 476.67 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000270011 | 0 | ENSG00000283108 | 1,059 | 0 | ENSG00000270011 | 3_prime_UTR_variant | ENSG00000188629 | 4,251 | ENSG00000283108 | 24,533 | 4,251 | ENSG00000188629 | 3_prime_UTR_variant | NA | NA | |
19 | 9,432,330 | T | C | false | distal | 1,125 | rs76065078 | 0.000186 | 0.00973 | 203.8 | intron_variant | intron_variant | ENSG00000174652 | 1,337 | ENSG00000287275 | 3,259 | 1,337 | ENSG00000174652 | intron_variant | ENSG00000174652 | 2,862 | ENSG00000287275 | 3,259 | 2,862 | ENSG00000174652 | distal | NA | NA | |
19 | 9,472,838 | A | G | false | distal | 1,126 | rs181065381 | 0.000052 | 0.002549 | 62.384 | intron_variant | intron_variant | ENSG00000198028 | 340 | ENSG00000198028 | 2,945 | 340 | ENSG00000198028 | intron_variant | ENSG00000198028 | 25,777 | ENSG00000198028 | 2,945 | 2,945 | ENSG00000198028 | distal | NA | NA | |
19 | 9,756,300 | C | T | false | 3_prime_UTR_variant | 1,114 | rs12462226 | 0.00087 | 0.15782 | 363.22 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000196605 | 0 | ENSG00000267370 | 0 | 0 | ENSG00000196605 | 3_prime_UTR_variant | ENSG00000196605 | 12,004 | ENSG00000267370 | 562 | 562 | ENSG00000267370 | 3_prime_UTR_variant | NA | NA | |
19 | 9,814,231 | G | A | false | 3_prime_UTR_variant | 1,109 | rs62105744 | 0.000069 | 0.036413 | 47.897 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000127452 | 817 | ENSG00000127452 | 0 | 0 | ENSG00000127452 | 3_prime_UTR_variant | ENSG00000127452 | 817 | ENSG00000127452 | 4,553 | 817 | ENSG00000127452 | 3_prime_UTR_variant | NA | NA | |
19 | 9,824,893 | G | A | false | distal | 1,125 | rs77480100 | 0.000041 | 0.010992 | 31.805 | intron_variant | intron_variant | ENSG00000127452 | 2,897 | ENSG00000198258 | 3,002 | 2,897 | ENSG00000127452 | intron_variant | ENSG00000127452 | 2,922 | ENSG00000198258 | 3,002 | 2,922 | ENSG00000127452 | distal | NA | NA | |
19 | 9,826,882 | A | G | false | tss_proximal | 989 | rs57736549 | 0.001277 | 0.05595 | 281.72 | intron_variant | pELS | ENSG00000127452 | 908 | ENSG00000198258 | 1,013 | 908 | ENSG00000127452 | tss_proximal | ENSG00000127452 | 933 | ENSG00000198258 | 1,013 | 933 | ENSG00000127452 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
19 | 9,842,067 | G | A | false | distal | 1,071 | rs1985604 | 0.000508 | 0.11935 | 93.09 | intron_variant | dELS | ENSG00000127445 | 3,418 | ENSG00000127445 | 3,418 | 3,418 | ENSG00000127445 | dELS | ENSG00000127445 | 6,725 | ENSG00000127445 | 3,467 | 3,467 | ENSG00000127445 | distal | NA | NA | |
19 | 9,941,494 | C | A | false | distal | 1,090 | rs36110067 | 0.000064 | 0.23968 | 50.42 | intergenic_variant | dELS | ENSG00000105088 | 4,978 | ENSG00000105088 | 5,169 | 4,978 | ENSG00000105088 | dELS | ENSG00000105088 | 4,978 | ENSG00000105088 | 5,169 | 4,978 | ENSG00000105088 | distal | NA | NA | |
19 | 10,005,832 | C | T | false | missense_variant | 1,011 | rs2303098 | 0.000157 | 0.18298 | 58.699 | missense_variant | missense_variant | ENSG00000080573 | 0 | ENSG00000267650 | 8,668 | 0 | ENSG00000080573 | missense_variant | ENSG00000080573 | 4,671 | ENSG00000267650 | 9,834 | 4,671 | ENSG00000080573 | missense_variant | NA | NA | |
19 | 10,014,938 | C | G | false | distal | 995 | rs1644726 | 0.000098 | 0.46372 | 57.159 | intron_variant | pELS_flank | ENSG00000080511 | 1,337 | ENSG00000080511 | 2,227 | 1,337 | ENSG00000080511 | pELS_flank | ENSG00000080511 | 1,454 | ENSG00000080511 | 2,227 | 1,454 | ENSG00000080511 | distal | NA | NA | |
19 | 10,017,445 | G | A | false | tss_proximal | 1,097 | rs1673132 | 0.00005 | 0.079661 | 25.376 | intron_variant | intron_variant | ENSG00000080511 | 229 | ENSG00000080511 | 229 | 229 | ENSG00000080511 | tss_proximal | ENSG00000080511 | 3,315 | ENSG00000080511 | 278 | 278 | ENSG00000080511 | tss_proximal | tss_prox:b2 | tss_prox:b1 | |
19 | 10,110,993 | G | A | false | missense_variant | 1,030 | rs74406884 | 0.000968 | 0.007907 | 14.687 | missense_variant | missense_variant | ENSG00000243207 | 0 | ENSG00000130810 | 0 | 0 | ENSG00000243207 | missense_variant | ENSG00000244165 | 699 | ENSG00000130810 | 534 | 534 | ENSG00000130810 | missense_variant | NA | NA | |
19 | 10,113,850 | C | T | false | synonymous_variant | 1,061 | rs3745600 | 0.000506 | 0.44743 | 76.18 | synonymous_variant | synonymous_variant | ENSG00000243207 | 0 | ENSG00000244165 | 15 | 0 | ENSG00000243207 | synonymous_variant | ENSG00000244165 | 2,156 | ENSG00000244165 | 1,745 | 1,745 | ENSG00000244165 | synonymous_variant | NA | NA | |
19 | 10,115,101 | A | G | false | 3_prime_UTR_variant | 1,106 | rs7401 | 0.000242 | 0.44994 | 76.71 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000244165 | 0 | ENSG00000130811 | 0 | 0 | ENSG00000244165 | 3_prime_UTR_variant | ENSG00000130811 | 1,725 | ENSG00000130811 | 1,586 | 1,586 | ENSG00000130811 | 3_prime_UTR_variant | NA | NA | |
19 | 10,115,580 | A | G | false | synonymous_variant | 1,061 | rs7710 | 0.000556 | 0.44995 | 76.902 | synonymous_variant | synonymous_variant | ENSG00000130811 | 0 | ENSG00000130811 | 0 | 0 | ENSG00000130811 | synonymous_variant | ENSG00000130811 | 1,246 | ENSG00000130811 | 1,107 | 1,107 | ENSG00000130811 | synonymous_variant | NA | NA | |
19 | 10,225,439 | A | C | true | distal | 1,077 | rs8102623 | 0.981545 | Neutro | 0.19205 | 62.842 | intron_variant | dELS | ENSG00000267534 | 491 | ENSG00000264266 | 4,973 | 491 | ENSG00000267534 | dELS | ENSG00000130816 | 5,833 | ENSG00000264266 | 4,973 | 4,973 | ENSG00000264266 | distal | NA | NA |
19 | 10,236,408 | T | C | true | distal | 1,078 | rs8108722 | 0.99856 | Neutro | 0.19328 | 62.776 | intergenic_variant | dELS | ENSG00000267534 | 5,076 | ENSG00000264266 | 5,922 | 5,076 | ENSG00000267534 | dELS | ENSG00000267534 | 5,076 | ENSG00000264266 | 5,994 | 5,076 | ENSG00000267534 | distal | NA | NA |
19 | 10,252,575 | A | C | false | missense_variant | 1,021 | rs113197610 | 0.000561 | 0.015351 | 16.175 | missense_variant | missense_variant | ENSG00000105364 | 0 | ENSG00000266978 | 0 | 0 | ENSG00000105364 | missense_variant | ENSG00000105364 | 298 | ENSG00000105364 | 269 | 269 | ENSG00000105364 | missense_variant | NA | NA | |
19 | 10,265,313 | C | T | false | distal | 1,080 | rs376950024 | 0.000092 | 0.013833 | 25.445 | intron_variant | dELS | ENSG00000105364 | 5,257 | ENSG00000266978 | 4,884 | 4,884 | ENSG00000266978 | dELS | ENSG00000090339 | 5,779 | ENSG00000267105 | 5,267 | 5,267 | ENSG00000267105 | distal | NA | NA | |
19 | 10,265,686 | G | T | false | distal | 1,080 | rs74626328 | 0.000452 | 0.015284 | 27.297 | intron_variant | dELS | ENSG00000090339 | 5,406 | ENSG00000266978 | 5,257 | 5,257 | ENSG00000266978 | dELS | ENSG00000090339 | 5,406 | ENSG00000267105 | 5,640 | 5,406 | ENSG00000090339 | distal | NA | NA | |
19 | 10,280,935 | T | G | true | distal | 1,041 | rs2358581 | 0.98674 | WBC | 0.26613 | 54.832 | intron_variant | dELS_flank | ENSG00000090339 | 2,545 | ENSG00000090339 | 1,322 | 1,322 | ENSG00000090339 | dELS_flank | ENSG00000105371 | 6,019 | ENSG00000090339 | 1,322 | 1,322 | ENSG00000090339 | distal | NA | NA |
19 | 10,333,927 | C | G | false | missense_variant | 1,000 | rs2230399 | 0.000146 | 0.092954 | 52.331 | missense_variant | missense_variant | ENSG00000076662 | 0 | ENSG00000274425 | 0 | 0 | ENSG00000076662 | missense_variant | ENSG00000161847 | 288 | ENSG00000161847 | 415 | 288 | ENSG00000161847 | missense_variant | NA | NA | |
19 | 10,337,119 | G | A | false | distal | 1,049 | rs7409490 | 0.000124 | 0.16415 | 58.78 | intron_variant | dELS_flank | ENSG00000076662 | 1,142 | ENSG00000274425 | 870 | 870 | ENSG00000274425 | dELS_flank | ENSG00000076662 | 1,345 | ENSG00000076662 | 2,504 | 1,345 | ENSG00000076662 | distal | NA | NA | |
19 | 10,352,442 | G | C | true | missense_variant | 1,007 | rs34536443 | 1 | AID,IGF1,Lym,Plt | 0.04598 | 40.766 | missense_variant | missense_variant | ENSG00000105397 | 0 | ENSG00000105397 | 0 | 0 | ENSG00000105397 | missense_variant | ENSG00000105397 | 1,481 | ENSG00000105397 | 342 | 342 | ENSG00000105397 | missense_variant | NA | NA |
19 | 10,354,167 | G | A | true | missense_variant | 1,008 | rs35018800 | 0.997595 | Lym | 0.008275 | 11.237 | missense_variant | missense_variant | ENSG00000105397 | 0 | ENSG00000105397 | 0 | 0 | ENSG00000105397 | missense_variant | ENSG00000105397 | 242 | ENSG00000105397 | 11 | 11 | ENSG00000105397 | missense_variant | NA | NA |
19 | 10,359,023 | A | G | false | tss_proximal | 1,097 | rs12720294 | 0.000069 | 0.080103 | 104.32 | intron_variant | CA-CTCF | ENSG00000105397 | 151 | ENSG00000105397 | 151 | 151 | ENSG00000105397 | tss_proximal | ENSG00000105397 | 2,409 | ENSG00000105397 | 412 | 412 | ENSG00000105397 | tss_proximal | tss_prox:b2 | tss_prox:b1 | |
19 | 10,359,299 | A | C | true | missense_variant | 1,009 | rs12720356 | 0.999595 | IGF1 | 0.097341 | 56.971 | missense_variant | missense_variant | ENSG00000105397 | 0 | ENSG00000105397 | 0 | 0 | ENSG00000105397 | missense_variant | ENSG00000105397 | 2,685 | ENSG00000105397 | 688 | 688 | ENSG00000105397 | missense_variant | NA | NA |
19 | 10,360,786 | C | T | true | distal | 1,118 | rs8111359 | 0.98302 | Testosterone_F | 0.095109 | 48.367 | intron_variant | CA | ENSG00000105397 | 724 | ENSG00000105397 | 175 | 175 | ENSG00000105397 | CA | ENSG00000105397 | 4,172 | ENSG00000105397 | 1,396 | 1,396 | ENSG00000105397 | distal | NA | NA |
19 | 10,362,462 | A | G | false | splicing | 1,131 | rs280520 | 0.000527 | 0.23185 | 117.2 | splice_polypyrimidine_tract_variant | splice_polypyrimidine_tract_variant | ENSG00000105397 | 5 | ENSG00000105397 | 5 | 5 | ENSG00000105397 | splice_polypyrimidine_tract_variant | ENSG00000105397 | 3,400 | ENSG00000105397 | 278 | 278 | ENSG00000105397 | splicing | NA | splicing:b1 | |
19 | 10,364,973 | C | T | false | missense_variant | 1,014 | rs2304255 | 0.000727 | 0.0773 | 67.796 | missense_variant | missense_variant | ENSG00000105397 | 0 | ENSG00000105397 | 0 | 0 | ENSG00000105397 | missense_variant | ENSG00000105397 | 889 | ENSG00000105397 | 2,789 | 889 | ENSG00000105397 | missense_variant | NA | NA | |
19 | 10,405,128 | T | C | false | distal | 997 | rs3760650 | 0.000273 | 0.30494 | 132.2 | intron_variant | pELS_flank | ENSG00000105401 | 1,532 | ENSG00000284268 | 1,589 | 1,532 | ENSG00000105401 | pELS_flank | ENSG00000105401 | 1,585 | ENSG00000284268 | 1,589 | 1,585 | ENSG00000105401 | distal | NA | NA | |
19 | 10,410,288 | T | C | false | distal | 1,088 | rs115771260 | 0.000214 | 0.072823 | 70.434 | intron_variant | dELS | ENSG00000065989 | 6,484 | ENSG00000284268 | 6,749 | 6,484 | ENSG00000065989 | dELS | ENSG00000065989 | 6,484 | ENSG00000284268 | 6,749 | 6,484 | ENSG00000065989 | distal | NA | NA | |
19 | 10,414,696 | G | A | true | distal | 996 | rs142770866 | 0.98203 | Lym,WBC | 0.085384 | 55.498 | intron_variant | pELS_flank | ENSG00000065989 | 2,076 | ENSG00000284268 | 11,157 | 2,076 | ENSG00000065989 | pELS_flank | ENSG00000065989 | 2,076 | ENSG00000284268 | 11,157 | 2,076 | ENSG00000065989 | distal | NA | NA |
19 | 10,499,560 | A | G | false | missense_variant | 1,009 | rs1048287 | 0.00012 | 0.097255 | 112.22 | missense_variant | missense_variant | ENSG00000079999 | 0 | ENSG00000079999 | 0 | 0 | ENSG00000079999 | missense_variant | ENSG00000079999 | 3,124 | ENSG00000079999 | 50 | 50 | ENSG00000079999 | missense_variant | NA | NA | |
19 | 10,505,201 | G | C | false | distal | 1,050 | rs567421145 | 0.000296 | 0.004325 | 16.404 | intergenic_variant | dELS_flank | ENSG00000079999 | 1,844 | ENSG00000079999 | 1,642 | 1,642 | ENSG00000079999 | dELS_flank | ENSG00000079999 | 1,844 | ENSG00000079999 | 1,642 | 1,642 | ENSG00000079999 | distal | NA | NA | |
19 | 10,544,813 | G | A | false | missense_variant | 1,022 | rs200278873 | 0.000244 | 0.00129 | 8.1184 | missense_variant | missense_variant | ENSG00000130734 | 0 | ENSG00000130734 | 0 | 0 | ENSG00000130734 | missense_variant | ENSG00000130734 | 306 | ENSG00000130734 | 196 | 196 | ENSG00000130734 | missense_variant | NA | NA | |
19 | 10,559,508 | C | G | false | missense_variant | 1,010 | rs3826709 | 0.000277 | 0.46478 | 133.01 | missense_variant | missense_variant | ENSG00000129347 | 0 | ENSG00000129347 | 0 | 0 | ENSG00000129347 | missense_variant | ENSG00000129347 | 6,481 | ENSG00000129347 | 31 | 31 | ENSG00000129347 | missense_variant | NA | NA | |
19 | 10,559,675 | C | T | false | missense_variant | 1,015 | rs45518133 | 0.000115 | 0.013089 | 29.055 | missense_variant | missense_variant | ENSG00000129347 | 0 | ENSG00000129347 | 0 | 0 | ENSG00000129347 | missense_variant | ENSG00000129347 | 6,314 | ENSG00000129347 | 154 | 154 | ENSG00000129347 | missense_variant | NA | NA | |
19 | 10,561,817 | C | T | false | missense_variant | 1,033 | rs12984043 | 0.000298 | 0.39027 | 103.91 | missense_variant | missense_variant | ENSG00000129347 | 0 | ENSG00000129347 | 0 | 0 | ENSG00000129347 | missense_variant | ENSG00000129347 | 4,172 | ENSG00000129347 | 1,880 | 1,880 | ENSG00000129347 | missense_variant | NA | NA | |
19 | 10,637,706 | G | C | false | missense_variant | 1,030 | rs142741358 | 0.000223 | 0.007098 | 13.049 | missense_variant | missense_variant | ENSG00000129353 | 0 | ENSG00000129353 | 0 | 0 | ENSG00000129353 | missense_variant | ENSG00000129353 | 37 | ENSG00000129353 | 779 | 37 | ENSG00000129353 | missense_variant | NA | NA | |
19 | 10,640,107 | C | T | true | distal | 1,079 | rs2116881 | 0.92932 | Height | 0.2908 | 192.47 | intron_variant | dELS | ENSG00000129353 | 1,791 | ENSG00000129353 | 1,791 | 1,791 | ENSG00000129353 | dELS | ENSG00000129353 | 2,362 | ENSG00000129353 | 2,228 | 2,228 | ENSG00000129353 | distal | NA | NA |
19 | 10,644,138 | G | A | false | 3_prime_UTR_variant | 1,107 | rs74795234 | 0.00123 | 0.046406 | 43.12 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000129353 | 0 | ENSG00000129353 | 0 | 0 | ENSG00000129353 | 3_prime_UTR_variant | ENSG00000129353 | 6,393 | ENSG00000129353 | 1,801 | 1,801 | ENSG00000129353 | 3_prime_UTR_variant | NA | NA | |
19 | 10,668,731 | C | G | false | distal | 1,050 | rs186701712 | 0.000739 | 0.00304 | 26.122 | intron_variant | dELS_flank | ENSG00000129351 | 1,784 | ENSG00000129351 | 1,780 | 1,780 | ENSG00000129351 | dELS_flank | ENSG00000129351 | 1,805 | ENSG00000129351 | 1,780 | 1,780 | ENSG00000129351 | distal | NA | NA | |
19 | 10,807,930 | G | C | false | tss_proximal | 1,095 | rs569639890 | 0.000179 | 0.007812 | 14.348 | intron_variant | CA_flank | ENSG00000079805 | 638 | ENSG00000079805 | 588 | 588 | ENSG00000079805 | tss_proximal | ENSG00000079805 | 21,181 | ENSG00000079805 | 588 | 588 | ENSG00000079805 | tss_proximal | tss_prox:b2 | tss_prox:b1 | |
19 | 10,836,846 | T | C | false | tss_proximal | 1,103 | rs3760781 | 0.000128 | 0.28844 | 191.16 | intron_variant | PLS_flank | ENSG00000214212 | 75 | ENSG00000099203 | 596 | 75 | ENSG00000214212 | tss_proximal | ENSG00000214212 | 270 | ENSG00000099203 | 596 | 270 | ENSG00000214212 | tss_proximal | tss_prox:b1 | tss_prox:b0 | |
19 | 10,859,147 | G | A | false | distal | 1,123 | rs138600298 | 0.001338 | 0.040059 | 67.902 | intron_variant | TF | ENSG00000214212 | 767 | ENSG00000214212 | 767 | 767 | ENSG00000214212 | TF | ENSG00000214212 | 10,731 | ENSG00000214212 | 10,651 | 10,651 | ENSG00000214212 | distal | NA | NA | |
19 | 10,874,277 | C | T | false | distal | 1,091 | rs187584615 | 0.000041 | 0.008467 | 56.792 | intron_variant | dELS | ENSG00000142453 | 2,354 | ENSG00000142453 | 2,354 | 2,354 | ENSG00000142453 | dELS | ENSG00000142453 | 2,573 | ENSG00000142453 | 2,366 | 2,366 | ENSG00000142453 | distal | NA | NA | |
19 | 10,894,945 | G | A | false | distal | 1,045 | rs8105092 | 0.002329 | 0.29402 | 237.75 | intron_variant | dELS_flank | ENSG00000142453 | 10,005 | ENSG00000142453 | 10,005 | 10,005 | ENSG00000142453 | dELS_flank | ENSG00000142453 | 23,241 | ENSG00000142453 | 23,034 | 23,034 | ENSG00000142453 | distal | NA | NA | |
19 | 10,920,788 | C | G | false | tss_proximal | 1,103 | rs2288842 | 0.000979 | 0.27827 | 240.73 | intron_variant | dELS_flank | ENSG00000142453 | 39 | ENSG00000142453 | 39 | 39 | ENSG00000142453 | tss_proximal | ENSG00000142453 | 858 | ENSG00000142453 | 120 | 120 | ENSG00000142453 | tss_proximal | tss_prox:b1 | tss_prox:b0 | |
19 | 10,995,924 | C | T | false | tss_proximal | 984 | rs11672232 | 0.000228 | 0.36237 | 244.87 | intron_variant | dELS_flank | ENSG00000127616 | 288 | ENSG00000127616 | 288 | 288 | ENSG00000127616 | tss_proximal | ENSG00000127616 | 339 | ENSG00000127616 | 340 | 339 | ENSG00000127616 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
19 | 11,063,765 | C | T | true | distal | 1,042 | rs73013196 | 0.9978 | TC | 0.068348 | 35.221 | intron_variant | dELS_flank | ENSG00000127616 | 1,296 | ENSG00000127616 | 1,488 | 1,296 | ENSG00000127616 | dELS_flank | ENSG00000130164 | 25,696 | ENSG00000127616 | 3,303 | 3,303 | ENSG00000127616 | distal | NA | NA |
19 | 11,095,364 | C | T | true | distal | 1,080 | rs17248748 | 1 | ApoB,LDLC | 0.016058 | 16.385 | intron_variant | dELS | ENSG00000130164 | 4,444 | ENSG00000130164 | 4,858 | 4,444 | ENSG00000130164 | dELS | ENSG00000130164 | 4,764 | ENSG00000130164 | 5,900 | 4,764 | ENSG00000130164 | distal | NA | NA |
19 | 11,105,941 | G | A | true | tss_proximal | 988 | rs10422256 | 0.99997 | LDLC,TC | 0.47746 | 84.438 | intron_variant | dELS_flank | ENSG00000130164 | 340 | ENSG00000130164 | 414 | 340 | ENSG00000130164 | tss_proximal | ENSG00000130164 | 633 | ENSG00000130164 | 414 | 414 | ENSG00000130164 | tss_proximal | tss_prox:b1 | tss_prox:b1 |
19 | 11,110,781 | G | C | false | tss_proximal | 1,093 | rs12710260 | 0.00207 | 0.4647 | 95.518 | intron_variant | dELS | ENSG00000130164 | 9 | ENSG00000130164 | 9 | 9 | ENSG00000130164 | tss_proximal | ENSG00000130164 | 5,473 | ENSG00000130164 | 67 | 67 | ENSG00000130164 | tss_proximal | tss_prox:b2 | tss_prox:b0 | |
19 | 11,120,527 | G | A | true | splicing | 1,119 | rs72658867 | 1 | ApoB,LDLC,TC | 0.012335 | 20.018 | splice_donor_5th_base_variant | splice_donor_5th_base_variant | ENSG00000130164 | 4 | ENSG00000130164 | 120 | 4 | ENSG00000130164 | splice_donor_5th_base_variant | ENSG00000130164 | 15,219 | ENSG00000130164 | 7,019 | 7,019 | ENSG00000130164 | splicing | NA | splicing:b0 |
19 | 11,133,320 | C | T | false | 3_prime_UTR_variant | 1,105 | rs539827046 | 0.000048 | 0.002676 | 10.331 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000130164 | 0 | ENSG00000130164 | 0 | 0 | ENSG00000130164 | 3_prime_UTR_variant | ENSG00000161888 | 22,440 | ENSG00000130164 | 5,772 | 5,772 | ENSG00000130164 | 3_prime_UTR_variant | NA | NA | |
19 | 11,133,448 | G | A | true | 3_prime_UTR_variant | 1,105 | rs184187776 | 0.998535 | LDLC | 0.00165 | 4.69 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000130164 | 0 | ENSG00000130164 | 0 | 0 | ENSG00000130164 | 3_prime_UTR_variant | ENSG00000161888 | 22,312 | ENSG00000130164 | 5,900 | 5,900 | ENSG00000130164 | 3_prime_UTR_variant | NA | NA |
19 | 11,133,635 | C | G | false | 3_prime_UTR_variant | 1,105 | rs72658880 | 0.000161 | 0.00633 | 16.945 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000130164 | 0 | ENSG00000130164 | 113 | 0 | ENSG00000130164 | 3_prime_UTR_variant | ENSG00000161888 | 22,125 | ENSG00000130164 | 6,087 | 6,087 | ENSG00000130164 | 3_prime_UTR_variant | NA | NA | |
19 | 11,152,817 | A | G | false | distal | 1,068 | rs11878885 | 0.000259 | 0.073763 | 65.965 | intron_variant | dELS | ENSG00000161888 | 2,799 | ENSG00000161888 | 2,799 | 2,799 | ENSG00000161888 | dELS | ENSG00000161888 | 2,943 | ENSG00000161888 | 2,989 | 2,943 | ENSG00000161888 | distal | NA | NA | |
19 | 11,208,815 | G | A | false | synonymous_variant | 1,058 | rs8409 | 0.000818 | 0.42607 | 86.743 | synonymous_variant | synonymous_variant | ENSG00000130158 | 0 | ENSG00000130158 | 56 | 0 | ENSG00000130158 | synonymous_variant | ENSG00000130158 | 128 | ENSG00000130158 | 56 | 56 | ENSG00000130158 | synonymous_variant | NA | NA | |
19 | 11,214,289 | C | T | false | missense_variant | 1,031 | rs34243815 | 0.008676 | 0.071473 | 26.513 | missense_variant | missense_variant | ENSG00000130158 | 0 | ENSG00000130158 | 1,321 | 0 | ENSG00000130158 | missense_variant | ENSG00000130158 | 5,344 | ENSG00000130158 | 2,978 | 2,978 | ENSG00000130158 | missense_variant | NA | NA | |
19 | 11,215,443 | A | G | false | synonymous_variant | 1,057 | rs2304155 | 0.001471 | 0.39502 | 87.773 | synonymous_variant | synonymous_variant | ENSG00000130158 | 0 | ENSG00000130158 | 167 | 0 | ENSG00000130158 | synonymous_variant | ENSG00000130158 | 6,498 | ENSG00000130158 | 1,824 | 1,824 | ENSG00000130158 | synonymous_variant | NA | NA | |
19 | 11,294,842 | G | A | false | distal | 998 | rs412934 | 0.001245 | 0.31154 | 140.68 | downstream_gene_variant | pELS_flank | ENSG00000130167 | 1,296 | ENSG00000267174 | 872 | 872 | ENSG00000267174 | pELS_flank | ENSG00000130167 | 1,296 | ENSG00000130167 | 1,326 | 1,296 | ENSG00000130167 | distal | NA | NA | |
19 | 11,330,698 | T | C | true | distal | 1,043 | rs55670943 | 1 | DBP,MAP,SBP | 0.008635 | 17.782 | intron_variant | dELS_flank | ENSG00000130167 | 3,701 | ENSG00000267174 | 6,256 | 3,701 | ENSG00000130167 | dELS_flank | ENSG00000105514 | 8,958 | ENSG00000267174 | 6,256 | 6,256 | ENSG00000267174 | distal | NA | NA |
19 | 11,337,210 | C | T | false | missense_variant | 1,012 | rs3969860 | 0.000114 | 0.032507 | 91.1 | missense_variant | missense_variant | ENSG00000105514 | 0 | ENSG00000105518 | 5,567 | 0 | ENSG00000105514 | missense_variant | ENSG00000105514 | 2,446 | ENSG00000183401 | 7,473 | 2,446 | ENSG00000105514 | missense_variant | NA | NA | |
19 | 11,354,640 | G | C | false | missense_variant | 1,010 | rs6887 | 0.000109 | 0.46773 | 32.907 | missense_variant | missense_variant | ENSG00000183401 | 0 | ENSG00000183401 | 0 | 0 | ENSG00000183401 | missense_variant | ENSG00000105520 | 745 | ENSG00000105520 | 790 | 745 | ENSG00000105520 | missense_variant | NA | NA | |
19 | 11,362,682 | C | G | false | missense_variant | 1,014 | rs11540666 | 0.001217 | 0.076187 | 19.459 | missense_variant | missense_variant | ENSG00000105520 | 0 | ENSG00000105520 | 0 | 0 | ENSG00000105520 | missense_variant | ENSG00000105520 | 7,183 | ENSG00000105520 | 1,415 | 1,415 | ENSG00000105520 | missense_variant | NA | NA | |
19 | 11,416,089 | T | G | true | missense_variant | 1,010 | rs167479 | 1 | DBP,MAP,PP,SBP | 0.47038 | 21.936 | missense_variant | missense_variant | ENSG00000205517 | 0 | ENSG00000205517 | 0 | 0 | ENSG00000205517 | missense_variant | ENSG00000205517 | 2,483 | ENSG00000205517 | 144 | 144 | ENSG00000205517 | missense_variant | NA | NA |
19 | 11,430,719 | G | C | false | missense_variant | 1,029 | rs61739927 | 0.000092 | 0.008269 | 55 | missense_variant | missense_variant | ENSG00000198003 | 0 | ENSG00000198003 | 0 | 0 | ENSG00000198003 | missense_variant | ENSG00000198003 | 4,401 | ENSG00000198003 | 4,179 | 4,179 | ENSG00000198003 | missense_variant | NA | NA | |
19 | 11,476,741 | A | G | false | distal | 1,053 | rs7250291 | 0.001039 | 0.023121 | 14.795 | intron_variant | dELS_flank | ENSG00000196361 | 3,858 | ENSG00000196361 | 3,511 | 3,511 | ENSG00000196361 | dELS_flank | ENSG00000196361 | 3,883 | ENSG00000196361 | 4,304 | 3,883 | ENSG00000196361 | distal | NA | NA | |
19 | 11,476,822 | C | T | false | distal | 1,053 | rs601492 | 0.000843 | 0.019342 | 80.086 | intron_variant | dELS_flank | ENSG00000196361 | 3,777 | ENSG00000196361 | 3,430 | 3,430 | ENSG00000196361 | dELS_flank | ENSG00000196361 | 3,802 | ENSG00000196361 | 4,223 | 3,802 | ENSG00000196361 | distal | NA | NA | |
19 | 11,506,258 | C | T | false | missense_variant | 1,006 | rs35513404 | 0.000076 | 0.036017 | 45.935 | missense_variant | missense_variant | ENSG00000130159 | 0 | ENSG00000130159 | 0 | 0 | ENSG00000130159 | missense_variant | ENSG00000161914 | 418 | ENSG00000161914 | 436 | 418 | ENSG00000161914 | missense_variant | NA | NA | |
19 | 11,574,355 | A | G | false | distal | 1,052 | rs10425533 | 0.000461 | 0.41712 | 82.119 | intron_variant | dELS_flank | ENSG00000102575 | 297 | ENSG00000102575 | 304 | 297 | ENSG00000102575 | dELS_flank | ENSG00000102575 | 3,171 | ENSG00000102575 | 2,961 | 2,961 | ENSG00000102575 | distal | NA | NA | |
19 | 11,797,582 | A | G | false | non_coding_transcript_exon_variant | 980 | rs286232 | 0.009421 | 0.1485 | 112.58 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000177599 | 940 | ENSG00000267646 | 0 | 0 | ENSG00000267646 | non_coding_transcript_exon_variant | ENSG00000177599 | 940 | ENSG00000177599 | 84 | 84 | ENSG00000177599 | non_coding_transcript_exon_variant | NA | NA | |
19 | 11,797,955 | A | G | false | non_coding_transcript_exon_variant | 980 | rs286233 | 0.009188 | 0.14883 | 112.41 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000177599 | 567 | ENSG00000267646 | 0 | 0 | ENSG00000267646 | non_coding_transcript_exon_variant | ENSG00000177599 | 567 | ENSG00000177599 | 287 | 287 | ENSG00000177599 | non_coding_transcript_exon_variant | NA | NA | |
19 | 11,806,075 | C | T | false | missense_variant | 1,018 | rs61736266 | 0.000034 | 0.019049 | 20.768 | missense_variant | missense_variant | ENSG00000177599 | 0 | ENSG00000177599 | 1,407 | 0 | ENSG00000177599 | missense_variant | ENSG00000177599 | 7,498 | ENSG00000267646 | 7,476 | 7,476 | ENSG00000267646 | missense_variant | NA | NA | |
19 | 11,806,099 | A | G | false | missense_variant | 1,018 | rs141870350 | 0.000096 | 0.008528 | 18.15 | missense_variant | missense_variant | ENSG00000177599 | 0 | ENSG00000177599 | 1,431 | 0 | ENSG00000177599 | missense_variant | ENSG00000177599 | 7,522 | ENSG00000267646 | 7,500 | 7,500 | ENSG00000267646 | missense_variant | NA | NA | |
19 | 11,825,700 | T | A | false | distal | 1,121 | rs34871157 | 0.000483 | 0.1065 | 122.24 | intron_variant | CA-H3K4me3_flank | ENSG00000171295 | 1,866 | ENSG00000171295 | 8,024 | 1,866 | ENSG00000171295 | CA-H3K4me3_flank | ENSG00000171295 | 4,285 | ENSG00000171295 | 9,682 | 4,285 | ENSG00000171295 | distal | NA | NA | |
19 | 11,896,508 | G | A | false | distal | 1,083 | rs149963824 | 0.001684 | 0.072327 | 60.361 | intron_variant | dELS | ENSG00000198429 | 7,064 | ENSG00000171291 | 12,757 | 7,064 | ENSG00000198429 | dELS | ENSG00000198429 | 8,652 | ENSG00000267179 | 28,611 | 8,652 | ENSG00000198429 | distal | NA | NA | |
19 | 11,947,526 | G | A | false | missense_variant | 1,036 | rs77752522 | 0.00016 | 0.019798 | 179.07 | missense_variant | missense_variant | ENSG00000196757 | 0 | ENSG00000267179 | 2,715 | 0 | ENSG00000196757 | missense_variant | ENSG00000196757 | 771 | ENSG00000267179 | 2,715 | 771 | ENSG00000196757 | missense_variant | NA | NA | |
19 | 11,947,527 | T | A | false | missense_variant | 1,036 | rs371404 | 0.000158 | 0.019798 | 179.08 | missense_variant | missense_variant | ENSG00000196757 | 0 | ENSG00000267179 | 2,714 | 0 | ENSG00000196757 | missense_variant | ENSG00000196757 | 772 | ENSG00000267179 | 2,714 | 772 | ENSG00000196757 | missense_variant | NA | NA | |
19 | 11,987,871 | G | A | false | tss_proximal | 1,102 | rs117891210 | 0.00003 | 0.006256 | 17.349 | intron_variant | PLS | ENSG00000286098 | 47 | ENSG00000219665 | 47 | 47 | ENSG00000286098 | tss_proximal | ENSG00000286098 | 229 | ENSG00000219665 | 103 | 103 | ENSG00000219665 | tss_proximal | tss_prox:b1 | tss_prox:b0 | |
19 | 12,132,461 | C | T | false | 3_prime_UTR_variant | 1,109 | rs76936724 | 0.000179 | 0.040143 | 39.294 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000132010 | 0 | ENSG00000213297 | 0 | 0 | ENSG00000132010 | 3_prime_UTR_variant | ENSG00000132010 | 7,853 | ENSG00000132010 | 4,412 | 4,412 | ENSG00000132010 | 3_prime_UTR_variant | NA | NA | |
19 | 12,373,655 | G | A | false | non_coding_transcript_exon_variant | 979 | rs12461201 | 0.000174 | 0.46752 | 71.387 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000198342 | 7,749 | ENSG00000231361 | 0 | 0 | ENSG00000231361 | non_coding_transcript_exon_variant | ENSG00000198342 | 7,749 | ENSG00000231361 | 45 | 45 | ENSG00000231361 | non_coding_transcript_exon_variant | NA | NA | |
19 | 12,440,857 | G | T | false | tss_proximal | 1,103 | rs11878378 | 0.000727 | 0.27849 | 330.97 | intron_variant | PLS | ENSG00000180855 | 54 | ENSG00000180855 | 54 | 54 | ENSG00000180855 | tss_proximal | ENSG00000180855 | 163 | ENSG00000180855 | 163 | 163 | ENSG00000180855 | tss_proximal | tss_prox:b1 | tss_prox:b0 | |
19 | 12,502,393 | C | T | false | tss_proximal | 1,065 | rs11879827 | 0.000499 | 0.22944 | 266.51 | intron_variant | pELS | ENSG00000242852 | 11,350 | ENSG00000236483 | 281 | 281 | ENSG00000236483 | tss_proximal | ENSG00000242852 | 11,439 | ENSG00000236483 | 281 | 281 | ENSG00000236483 | tss_proximal | tss_prox:b2 | tss_prox:b2 | |
19 | 12,502,394 | A | G | false | tss_proximal | 1,065 | rs11882608 | 0.0005 | 0.22943 | 266.59 | intron_variant | pELS | ENSG00000242852 | 11,349 | ENSG00000236483 | 280 | 280 | ENSG00000236483 | tss_proximal | ENSG00000242852 | 11,438 | ENSG00000236483 | 280 | 280 | ENSG00000236483 | tss_proximal | tss_prox:b2 | tss_prox:b2 |
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