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public void fit ( INDArray examples , int [ ] labels ) { INDArray outcomeMatrix = FeatureUtil . toOutcomeMatrix ( labels , numLabels ( ) ) ; fit ( examples , outcomeMatrix ) ; }
Fit the model
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public String getFirstPart ( ) { StringBuilder builder = new StringBuilder ( ) ; builder . append ( useHttps ? "https" : "http" ) . append ( "://" ) . append ( address ) . append ( ":" ) . append ( port ) . append ( "" ) ; return builder . toString ( ) ; }
This method returns scheme address and port for this UiConnectionInfo
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public List < String > keysForBucket ( String bucket ) { AmazonS3 s3 = getClient ( ) ; List < String > ret = new ArrayList < > ( ) ; ListObjectsRequest listObjectsRequest = new ListObjectsRequest ( ) . withBucketName ( bucket ) ; ObjectListing objectListing ; do { objectListing = s3 . listObjects ( listObjectsRequest )...
Return the keys for a bucket
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private void forwardToParameterServer ( INDArrayMessage message ) { try { incomingFlow . accept ( message ) ; } catch ( Exception e ) { throw new RuntimeException ( e ) ; } }
This method puts INDArray to the flow read by parameter server
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public void downloadAndExtract ( DataSetType set ) throws IOException { String localFilename = new File ( remoteDataUrl ( set ) ) . getName ( ) ; File tmpFile = new File ( System . getProperty ( "java.io.tmpdir" ) , localFilename ) ; File localCacheDir = getLocalCacheDir ( ) ; if ( localCacheDir . exists ( ) ) { File [...
Downloads and extracts the local dataset .
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protected List < StatsStorageEvent > checkStorageEvents ( Persistable p ) { if ( listeners . isEmpty ( ) ) return null ; int count = 0 ; StatsStorageEvent newSID = null ; StatsStorageEvent newTID = null ; StatsStorageEvent newWID = null ; if ( ! sessionIDs . contains ( p . getSessionID ( ) ) ) { newSID = new StatsStora...
available in the DB
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public void transferBackToVocabCache ( VocabCache cache , boolean emptyHolder ) { if ( ! ( cache instanceof InMemoryLookupCache ) ) throw new IllegalStateException ( "Sorry, only InMemoryLookupCache use implemented." ) ; List < VocabularyWord > words = words ( ) ; for ( VocabularyWord word : words ) { if ( word . getWo...
This method is required for compatibility purposes . It just transfers vocabulary from VocabHolder into VocabCache
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public static List < Integer > arrayToList ( int [ ] array , int codeLen ) { List < Integer > result = new ArrayList < > ( ) ; for ( int x = 0 ; x < codeLen ; x ++ ) { result . add ( array [ x ] ) ; } return result ; }
This method is used only for VocabCache compatibility purposes
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public void incrementWordCounter ( String word ) { if ( vocabulary . containsKey ( word ) ) { vocabulary . get ( word ) . incrementCount ( ) ; } }
Increments by one number of occurrences of the word in corpus
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protected synchronized void activateScavenger ( ) { int initialSize = vocabulary . size ( ) ; List < VocabularyWord > words = new ArrayList < > ( vocabulary . values ( ) ) ; for ( VocabularyWord word : words ) { if ( word . isSpecial ( ) || word . getCount ( ) >= minWordFrequency || word . getFrequencyShift ( ) == null...
This method removes low - frequency words based on their frequency change between activations . I . e . if word has appeared only once and it s retained the same frequency over consequence activations we can assume it can be removed freely
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public void resetWordCounters ( ) { for ( VocabularyWord word : getVocabulary ( ) ) { word . setHuffmanNode ( null ) ; word . setFrequencyShift ( null ) ; word . setCount ( 0 ) ; } }
This methods reset counters for all words in vocabulary
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public void truncateVocabulary ( int threshold ) { logger . debug ( "Truncating vocabulary to minWordFrequency: [" + threshold + "]" ) ; Set < String > keyset = vocabulary . keySet ( ) ; for ( String word : keyset ) { VocabularyWord vw = vocabulary . get ( word ) ; if ( ! vw . isSpecial ( ) && vw . getCount ( ) < thres...
All words with frequency below threshold wii be removed
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public int indexOf ( String word ) { if ( vocabulary . containsKey ( word ) ) { return vocabulary . get ( word ) . getHuffmanNode ( ) . getIdx ( ) ; } else return - 1 ; }
This method returns index of word in sorted list .
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public List < VocabularyWord > words ( ) { List < VocabularyWord > vocab = new ArrayList < > ( vocabulary . values ( ) ) ; Collections . sort ( vocab , new Comparator < VocabularyWord > ( ) { public int compare ( VocabularyWord o1 , VocabularyWord o2 ) { return Integer . compare ( o2 . getCount ( ) , o1 . getCount ( ) ...
Returns sorted list of words in vocabulary . Sort is DESCENDING .
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public ThresholdAlgorithm getAverageThresholdAlgorithm ( ) { Collection < ThresholdAlgorithm > c = this . allThreadThresholdAlgorithms . values ( ) ; if ( c . isEmpty ( ) ) { return null ; } if ( c . size ( ) == 1 ) { return c . iterator ( ) . next ( ) ; } Iterator < ThresholdAlgorithm > iter = c . iterator ( ) ; Thres...
This should ONLY be called once all training threads have completed
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public static SDVariable softmax ( SameDiff SD , SDVariable x , int dimension , int rank ) { int [ ] permutation = ArrayUtil . range ( 0 , rank ) ; permutation [ 0 ] = dimension ; permutation [ dimension ] = 0 ; return SD . nn . softmax ( x . permute ( permutation ) ) . permute ( ArrayUtil . invertPermutation ( permuta...
Compute softmax along a given dimension
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public String createSubdir ( ) throws IOException { if ( ! saveData ) return "" ; File dr = new File ( dataRoot ) ; dr . mkdirs ( ) ; File [ ] rootChildren = dr . listFiles ( ) ; int i = 1 ; while ( childrenExist ( rootChildren , i + "" ) ) i ++ ; File f = new File ( dataRoot + "/" + i ) ; f . mkdirs ( ) ; currentDir =...
FIXME race condition if you create them at the same time where checking if dir exists is not atomic with the creation
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public V getRecord ( long index ) throws IOException { int readerIdx = - 1 ; for ( int i = 0 ; i < recordIndexesEachReader . size ( ) ; i ++ ) { Pair < Long , Long > p = recordIndexesEachReader . get ( i ) ; if ( index >= p . getFirst ( ) && index <= p . getSecond ( ) ) { readerIdx = i ; break ; } } if ( readerIdx == -...
It a single record from the map file for the given index
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public INDArray exec ( RandomOp op , Random rng ) { if ( ! ( rng instanceof CpuNativeRandom ) ) throw new IllegalStateException ( "You should use one of NativeRandom classes for NativeOperations execution. Op class: " + op . getClass ( ) . getName ( ) ) ; long st = profilingConfigurableHookIn ( op ) ; Preconditions . c...
This method executes specific RandomOp against specified RNG
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public void processMessage ( ) { INDArray syn0 = storage . getArray ( WordVectorStorage . SYN_0 ) ; INDArray syn1 = storage . getArray ( WordVectorStorage . SYN_1 ) ; INDArray syn1Neg = storage . getArray ( WordVectorStorage . SYN_1_NEGATIVE ) ; INDArray expTable = storage . getArray ( WordVectorStorage . EXP_TABLE ) ;...
This method initializes shard storage with given data
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public LongShapeDescriptor asDataType ( DataType dataType ) { long extras = 0L ; extras = ArrayOptionsHelper . setOptionBit ( extras , dataType ) ; if ( isEmpty ( ) ) { extras = ArrayOptionsHelper . setOptionBit ( extras , ArrayType . EMPTY ) ; } return new LongShapeDescriptor ( shape , stride , offset , ews , order , ...
Return a new LongShapeDescriptor with the same shape strides order etc but with the specified datatype instead
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public void incrementWordCount ( String word , int increment ) { T element = extendedVocabulary . get ( word ) ; if ( element != null ) { element . increaseElementFrequency ( increment ) ; totalWordCount . addAndGet ( increment ) ; } }
Increment frequency for specified label by specified value
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public String wordAtIndex ( int index ) { T element = idxMap . get ( index ) ; if ( element != null ) { return element . getLabel ( ) ; } return null ; }
Returns the label of the element at specified Huffman index
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public int indexOf ( String label ) { T token = tokenFor ( label ) ; if ( token != null ) { return token . getIndex ( ) ; } else return - 2 ; }
Returns Huffman index for specified label
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public void incrementDocCount ( String word , long howMuch ) { T element = extendedVocabulary . get ( word ) ; if ( element != null ) { element . incrementSequencesCount ( ) ; } }
Increment number of documents the label was observed in
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public void setCountForDoc ( String word , long count ) { T element = extendedVocabulary . get ( word ) ; if ( element != null ) { element . setSequencesCount ( count ) ; } }
Set exact number of observed documents that contain specified word
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public boolean addToken ( T element ) { boolean ret = false ; T oldElement = vocabulary . putIfAbsent ( element . getStorageId ( ) , element ) ; if ( oldElement == null ) { if ( element . getLabel ( ) != null ) { extendedVocabulary . put ( element . getLabel ( ) , element ) ; } oldElement = element ; ret = true ; } els...
This method adds specified SequenceElement to vocabulary
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public Pair < DataBuffer , long [ ] > createShapeInformation ( long [ ] shape , DataType dataType ) { char order = Nd4j . order ( ) ; return createShapeInformation ( shape , order , dataType ) ; }
This method creates shapeInformation buffer based on shape being passed in
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public Tokenizer create ( String toTokenize ) { if ( toTokenize . isEmpty ( ) ) { throw new IllegalArgumentException ( "Unable to proceed; no sentence to tokenize" ) ; } Tokenizer t = new JapaneseTokenizer ( kuromoji , toTokenize , useBaseForm ) ; if ( preProcessor != null ) { t . setTokenPreProcessor ( preProcessor ) ...
Create a Tokenizer instance for the given sentence .
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public IActivation getGateActivationFromConfig ( Map < String , Object > layerConfig ) throws InvalidKerasConfigurationException , UnsupportedKerasConfigurationException { Map < String , Object > innerConfig = KerasLayerUtils . getInnerLayerConfigFromConfig ( layerConfig , conf ) ; if ( ! innerConfig . containsKey ( co...
Get LSTM gate activation function from Keras layer configuration .
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public double getForgetBiasInitFromConfig ( Map < String , Object > layerConfig , boolean train ) throws InvalidKerasConfigurationException , UnsupportedKerasConfigurationException { Map < String , Object > innerConfig = KerasLayerUtils . getInnerLayerConfigFromConfig ( layerConfig , conf ) ; String kerasForgetBiasInit...
Get LSTM forget gate bias initialization from Keras layer configuration .
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public void saveAsFile ( List < String > labels , String path ) throws IOException { BufferedWriter write = null ; try { write = new BufferedWriter ( new FileWriter ( new File ( path ) ) ) ; for ( int i = 0 ; i < Y . rows ( ) ; i ++ ) { if ( i >= labels . size ( ) ) break ; String word = labels . get ( i ) ; if ( word ...
Save the model as a file with a csv format adding the label as the last column .
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public void fit ( INDArray data , int nDims ) { this . x = data ; this . numDimensions = nDims ; fit ( ) ; }
Change the dimensions with
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public static Checkpoint lastCheckpoint ( File rootDir ) { List < Checkpoint > all = availableCheckpoints ( rootDir ) ; if ( all . isEmpty ( ) ) { return null ; } return all . get ( all . size ( ) - 1 ) ; }
Return the most recent checkpoint if one exists - otherwise returns null
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public static MultiLayerNetwork loadCheckpointMLN ( File rootDir , Checkpoint checkpoint ) { return loadCheckpointMLN ( rootDir , checkpoint . getCheckpointNum ( ) ) ; }
Load a MultiLayerNetwork for the given checkpoint that resides in the specified root directory
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public static MultiLayerNetwork loadCheckpointMLN ( File rootDir , int checkpointNum ) { File f = getFileForCheckpoint ( rootDir , checkpointNum ) ; try { return ModelSerializer . restoreMultiLayerNetwork ( f , true ) ; } catch ( IOException e ) { throw new RuntimeException ( e ) ; } }
Load a MultiLayerNetwork for the given checkpoint number
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public static ComputationGraph loadCheckpointCG ( File rootDir , Checkpoint checkpoint ) { return loadCheckpointCG ( rootDir , checkpoint . getCheckpointNum ( ) ) ; }
Load a ComputationGraph for the given checkpoint from the specified root direcotry
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public static ComputationGraph loadCheckpointCG ( File rootDir , int checkpointNum ) { File f = getFileForCheckpoint ( rootDir , checkpointNum ) ; try { return ModelSerializer . restoreComputationGraph ( f , true ) ; } catch ( IOException e ) { throw new RuntimeException ( e ) ; } }
Load a ComputationGraph for the given checkpoint that resides in the specified root directory
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public void setupSearchState ( Pair < Gradient , Double > pair ) { INDArray gradient = pair . getFirst ( ) . gradient ( conf . variables ( ) ) ; INDArray params = model . params ( ) . dup ( ) ; searchState . put ( GRADIENT_KEY , gradient ) ; searchState . put ( SCORE_KEY , pair . getSecond ( ) ) ; searchState . put ( P...
Setup the initial search state
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public static ComputationGraph toComputationGraph ( MultiLayerNetwork net ) { ComputationGraphConfiguration . GraphBuilder b = new NeuralNetConfiguration . Builder ( ) . dataType ( net . getLayerWiseConfigurations ( ) . getDataType ( ) ) . graphBuilder ( ) ; MultiLayerConfiguration origConf = net . getLayerWiseConfigur...
Convert a MultiLayerNetwork to a ComputationGraph
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private void iterations ( ) { int iterationCount = 0 ; while ( ( clusteringStrategy . getTerminationCondition ( ) != null && ! clusteringStrategy . getTerminationCondition ( ) . isSatisfied ( iterationHistory ) ) || iterationHistory . getMostRecentIterationInfo ( ) . isStrategyApplied ( ) ) { currentIteration ++ ; remo...
Run clustering iterations until a termination condition is hit . This is done by first classifying all points and then updating cluster centers based on those classified points
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protected void initClusters ( ) { log . info ( "Generating initial clusters" ) ; List < Point > points = new ArrayList < > ( initialPoints ) ; val random = Nd4j . getRandom ( ) ; Distance distanceFn = clusteringStrategy . getDistanceFunction ( ) ; int initialClusterCount = clusteringStrategy . getInitialClusterCount ( ...
Initialize the cluster centers at random
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public int getMaxValueIndex ( double [ ] array ) { int index = 0 ; double max = Integer . MIN_VALUE ; for ( int i = 0 ; i < array . length ; i ++ ) { if ( array [ i ] > max ) { max = array [ i ] ; index = i ; } } return index ; }
Get the index position of maximum value the given array
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public int getMinValueIndex ( double [ ] array ) { int index = 0 ; double min = Integer . MAX_VALUE ; for ( int i = 0 ; i < array . length ; i ++ ) { if ( array [ i ] < min ) { min = array [ i ] ; index = i ; } } return index ; }
Get the index position of minimum value in the given array
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public double getNthOrderedValue ( double [ ] array , int n , boolean ascending ) { if ( n > array . length ) { n = array . length ; } int targetindex ; if ( ascending ) { targetindex = n ; } else { targetindex = array . length - n ; } return getOrderedValue ( array , targetindex ) ; }
Get the n - th value in the array after sorted
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public static INDArray concat ( INDArray [ ] history ) { INDArray arr = Nd4j . concat ( 0 , history ) ; return arr ; }
concat an array history into a single INDArry of as many channel as element in the history array
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public Transition < A > dup ( ) { INDArray [ ] dupObservation = dup ( observation ) ; INDArray nextObs = nextObservation . dup ( ) ; return new Transition < > ( dupObservation , action , reward , isTerminal , nextObs ) ; }
Duplicate this transition
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public static INDArray [ ] dup ( INDArray [ ] history ) { INDArray [ ] dupHistory = new INDArray [ history . length ] ; for ( int i = 0 ; i < history . length ; i ++ ) { dupHistory [ i ] = history [ i ] . dup ( ) ; } return dupHistory ; }
Duplicate an history
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public INDArray [ ] executeGraph ( SameDiff sd ) { return executeGraph ( sd , ExecutorConfiguration . builder ( ) . outputMode ( OutputMode . IMPLICIT ) . executionMode ( ExecutionMode . SEQUENTIAL ) . profilingMode ( OpExecutioner . ProfilingMode . DISABLED ) . build ( ) ) ; }
This method executes given graph and returns results
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public T get ( String variable , String frame , int iteration , FrameIter parentFrameIter ) { return get ( variable , frame , iteration , parentFrameIter , true ) ; }
Get a previously calculated output ; throws an exception if the output does not exist
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public T get ( String variable , String frame , int iteration , FrameIter parentFrameIter , boolean enforceExistence ) { VarId varId = newVarId ( variable , frame , iteration , parentFrameIter ) ; T out = nodeOutputs . get ( varId ) ; if ( enforceExistence ) { Preconditions . checkNotNull ( out , "No output found for v...
Get a previously calculated output
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protected ImageWritable doTransform ( ImageWritable image , Random random ) { if ( image == null ) { return null ; } Mat original = converter . convert ( image . getFrame ( ) ) ; Mat grayed = new Mat ( ) ; cvtColor ( original , grayed , CV_BGR2GRAY ) ; if ( blurWidth > 0 && blurHeight > 0 ) blur ( grayed , grayed , new...
Takes an image and returns a cropped image based on it s largest blob .
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private INDArray setIdentityConv ( long [ ] shape , char order , INDArray paramView ) { final INDArrayIndex [ ] indArrayIndices = new INDArrayIndex [ shape . length ] ; for ( int i = 2 ; i < shape . length ; i ++ ) { if ( shape [ i ] % 2 == 0 ) { throw new IllegalStateException ( "Cannot use IDENTITY init with paramete...
Set identity mapping for convolution layers . When viewed as an NxM matrix of kernel tensors identity mapping is when parameters is a diagonal matrix of identity kernels .
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public static int countUniqueParameters ( List < ParameterSpace > allLeaves ) { List < ParameterSpace > unique = getUniqueObjects ( allLeaves ) ; int count = 0 ; for ( ParameterSpace ps : unique ) { if ( ! ps . isLeaf ( ) ) { throw new IllegalStateException ( "Method should only be used with leaf nodes" ) ; } count += ...
Count the number of unique parameters in the specified leaf nodes
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public static AeronConnectionInformation of ( String connectionHost , int connectionPort , int streamId ) { return AeronConnectionInformation . builder ( ) . connectionHost ( connectionHost ) . connectionPort ( connectionPort ) . streamId ( streamId ) . build ( ) ; }
Traditional static generator method
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public void merge ( ROC other ) { if ( this . thresholdSteps != other . thresholdSteps ) { throw new UnsupportedOperationException ( "Cannot merge ROC instances with different numbers of threshold steps (" + this . thresholdSteps + " vs. " + other . thresholdSteps + ")" ) ; } this . countActualPositive += other . count...
Merge this ROC instance with another . This ROC instance is modified by adding the stats from the other instance .
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private URL extractActualUrl ( URL jarUrl ) throws MalformedURLException { String urlFile = jarUrl . getFile ( ) ; int separatorIndex = urlFile . indexOf ( "!/" ) ; if ( separatorIndex != - 1 ) { String jarFile = urlFile . substring ( 0 , separatorIndex ) ; try { return new URL ( jarFile ) ; } catch ( MalformedURLExcep...
Extracts parent Jar URL from original ClassPath entry URL .
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public void updateState ( SubscriberState subscriberState ) { updated . put ( subscriberState . getStreamId ( ) , System . currentTimeMillis ( ) ) ; statusStorageMap . put ( subscriberState . getStreamId ( ) , subscriberState ) ; }
Update the state for storage
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public void init ( Model model , Object ... args ) { mediaDriverContext = new MediaDriver . Context ( ) ; mediaDriver = MediaDriver . launchEmbedded ( mediaDriverContext ) ; parameterServerNode = new ParameterServerNode ( mediaDriver , statusServerPort , numWorkers ) ; if ( parameterServerArgs == null ) parameterServer...
Initialize the context
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public StepReply < O > step ( A action ) { JSONObject body = new JSONObject ( ) . put ( "action" , getActionSpace ( ) . encode ( action ) ) . put ( "render" , render ) ; JSONObject reply = ClientUtils . post ( url + ENVS_ROOT + instanceId + STEP , body ) . getObject ( ) ; O observation = observationSpace . getValue ( r...
Step the environment by one action
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public O reset ( ) { JsonNode resetRep = ClientUtils . post ( url + ENVS_ROOT + instanceId + RESET , new JSONObject ( ) ) ; return observationSpace . getValue ( resetRep . getObject ( ) , "observation" ) ; }
Reset the state of the environment and return an initial observation .
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public void upload ( String trainingDir , String apiKey , String algorithmId ) { JSONObject json = new JSONObject ( ) . put ( "training_dir" , trainingDir ) . put ( "api_key" , apiKey ) . put ( "algorithm_id" , algorithmId ) ; uploadPost ( json ) ; }
Upload monitoring data to OpenAI servers .
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public static Model copyWeightsToModel ( Model model , Map < String , KerasLayer > kerasLayers ) throws InvalidKerasConfigurationException { Layer [ ] layersFromModel ; if ( model instanceof MultiLayerNetwork ) layersFromModel = ( ( MultiLayerNetwork ) model ) . getLayers ( ) ; else layersFromModel = ( ( ComputationGra...
Helper function to import weights from nested Map into existing model . Depends critically on matched layer and parameter names . In general this seems to be straightforward for most Keras models and layersOrdered but there may be edge cases .
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public static int determineKerasMajorVersion ( Map < String , Object > modelConfig , KerasModelConfiguration config ) throws InvalidKerasConfigurationException { int kerasMajorVersion ; if ( ! modelConfig . containsKey ( config . getFieldKerasVersion ( ) ) ) { log . warn ( "Could not read keras version used (no " + con...
Determine Keras major version
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public static String determineKerasBackend ( Map < String , Object > modelConfig , KerasModelConfiguration config ) { String kerasBackend = null ; if ( ! modelConfig . containsKey ( config . getFieldBackend ( ) ) ) { log . warn ( "Could not read keras backend used (no " + config . getFieldBackend ( ) + " field found) \...
Determine Keras backend
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public static Map < String , Object > parseModelConfig ( String modelJson , String modelYaml ) throws IOException , InvalidKerasConfigurationException { Map < String , Object > modelConfig ; if ( modelJson != null ) modelConfig = parseJsonString ( modelJson ) ; else if ( modelYaml != null ) modelConfig = parseYamlStrin...
Parse Keras model configuration from JSON or YAML string representation
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public static Map < String , Object > parseJsonString ( String json ) throws IOException { ObjectMapper mapper = new ObjectMapper ( ) ; TypeReference < HashMap < String , Object > > typeRef = new TypeReference < HashMap < String , Object > > ( ) { } ; return mapper . readValue ( json , typeRef ) ; }
Convenience function for parsing JSON strings .
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public static Map < String , Object > parseYamlString ( String yaml ) throws IOException { ObjectMapper mapper = new ObjectMapper ( new YAMLFactory ( ) ) ; TypeReference < HashMap < String , Object > > typeRef = new TypeReference < HashMap < String , Object > > ( ) { } ; return mapper . readValue ( yaml , typeRef ) ; }
Convenience function for parsing YAML strings .
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public DataSet vectorize ( InputStream is , String label ) { try { BufferedReader reader = new BufferedReader ( new InputStreamReader ( is , "UTF-8" ) ) ; String line = "" ; StringBuilder builder = new StringBuilder ( ) ; while ( ( line = reader . readLine ( ) ) != null ) { builder . append ( line ) ; } return vectoriz...
Text coming from an input stream considered as one document
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public DataSet vectorize ( String text , String label ) { INDArray input = transform ( text ) ; INDArray labelMatrix = FeatureUtil . toOutcomeVector ( labelsSource . indexOf ( label ) , labelsSource . size ( ) ) ; return new DataSet ( input , labelMatrix ) ; }
Vectorizes the passed in text treating it as one document
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public INDArray transform ( String text ) { Tokenizer tokenizer = tokenizerFactory . create ( text ) ; List < String > tokens = tokenizer . getTokens ( ) ; return transform ( tokens ) ; }
Transforms the matrix
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public static int getDimension ( INDArray arr , boolean defaultRows ) { if ( arr . isVector ( ) ) { return defaultRows ? ( int ) arr . rows ( ) : ( int ) arr . columns ( ) ; } if ( arr . ordering ( ) == NDArrayFactory . C ) return defaultRows ? ( int ) arr . columns ( ) : ( int ) arr . rows ( ) ; return defaultRows ? (...
Get the dimension associated with the given ordering .
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public static int getLd ( INDArray arr ) { if ( arr . isVector ( ) ) { return ( int ) arr . length ( ) ; } return arr . ordering ( ) == NDArrayFactory . C ? ( int ) arr . size ( 1 ) : ( int ) arr . size ( 0 ) ; }
Get the leading dimension for a blas invocation .
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public T deserialize ( String json ) { ObjectMapper mapper = SequenceElement . mapper ( ) ; try { T ret = ( T ) mapper . readValue ( json , targetClass ) ; return ret ; } catch ( IOException e ) { throw new RuntimeException ( e ) ; } }
This method builds object from provided JSON
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public String serialize ( T element ) { String json = null ; try { json = element . toJSON ( ) ; } catch ( Exception e ) { log . error ( "Direct serialization failed, falling back to jackson" ) ; } if ( json == null || json . isEmpty ( ) ) { ObjectMapper mapper = SequenceElement . mapper ( ) ; try { json = mapper . wri...
This method serializaes object into JSON string
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public static INDArray toArray ( Collection < ? extends Writable > record ) { List < Writable > l ; if ( record instanceof List ) { l = ( List < Writable > ) record ; } else { l = new ArrayList < > ( record ) ; } if ( l . size ( ) == 1 && l . get ( 0 ) instanceof NDArrayWritable ) { return ( ( NDArrayWritable ) l . get...
Convert a record to an INDArray . May contain a mix of Writables and row vector NDArrayWritables .
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public static List < Writable > toRecord ( INDArray array ) { List < Writable > writables = new ArrayList < > ( ) ; writables . add ( new NDArrayWritable ( array ) ) ; return writables ; }
Convert an ndarray to a record
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public static List < List < Writable > > toRecords ( DataSet dataSet ) { if ( isClassificationDataSet ( dataSet ) ) { return getClassificationWritableMatrix ( dataSet ) ; } else { return getRegressionWritableMatrix ( dataSet ) ; } }
Convert a DataSet to a matrix
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public void insert ( INDArray point ) { if ( ! point . isVector ( ) || point . length ( ) != dims ) throw new IllegalArgumentException ( "Point must be a vector of length " + dims ) ; if ( root == null ) { root = new KDNode ( point ) ; rect = new HyperRect ( HyperRect . point ( point ) ) ; } else { int disc = 0 ; KDNod...
Insert a point in to the tree
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public Pair < Double , INDArray > nn ( INDArray point ) { return nn ( root , point , rect , Double . POSITIVE_INFINITY , null , 0 ) ; }
Query for nearest neighbor . Returns the distance and point
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public void multiPartUpload ( File file , String bucketName ) { AmazonS3 client = new AmazonS3Client ( creds ) ; bucketName = ensureValidBucketName ( bucketName ) ; List < Bucket > buckets = client . listBuckets ( ) ; for ( Bucket b : buckets ) if ( b . getName ( ) . equals ( bucketName ) ) { doMultiPart ( client , buc...
Multi part upload for big files
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public void setCacheMode ( CacheMode mode ) { if ( mode == null ) mode = CacheMode . NONE ; for ( Layer layer : layers ) { layer . setCacheMode ( mode ) ; } }
This method sets specified CacheMode for all layers within network
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public Layer getLayer ( String name ) { Preconditions . checkState ( verticesMap . containsKey ( name ) , "Layer with name %s does not exist in the network" , name ) ; return verticesMap . get ( name ) . getLayer ( ) ; }
Get a given layer by name .
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public void setInput ( int inputNum , INDArray input ) { if ( inputs == null ) { inputs = new INDArray [ numInputArrays ] ; } inputs [ inputNum ] = input ; }
Set the specified input for the ComputationGraph
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public void setInputs ( INDArray ... inputs ) { if ( inputs != null && inputs . length != this . numInputArrays ) { throw new IllegalArgumentException ( "Invalid input array: network has " + numInputArrays + " inputs, but array is of length " + inputs . length ) ; } this . inputs = inputs ; }
Set all inputs for the ComputationGraph network
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public void setLabels ( INDArray ... labels ) { if ( labels != null && labels . length != this . numOutputArrays ) { throw new IllegalArgumentException ( "Invalid output array: network has " + numOutputArrays + " outputs, but array is of length " + labels . length ) ; } this . labels = labels ; }
Set all labels for the ComputationGraph network
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public void pretrainLayer ( String layerName , DataSetIterator dataSetIterator ) { if ( numInputArrays != 1 ) { throw new UnsupportedOperationException ( "Cannot train ComputationGraph network with multiple inputs using a DataSetIterator" ) ; } pretrainLayer ( layerName , ComputationGraphUtil . toMultiDataSetIterator ...
Pretrain a specified layer with the given DataSetIterator
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public void pretrainLayer ( String layerName , MultiDataSetIterator iter ) { try { pretrainLayerHelper ( layerName , iter , 1 ) ; } catch ( OutOfMemoryError e ) { CrashReportingUtil . writeMemoryCrashDump ( this , e ) ; throw e ; } }
Pretrain a specified layer with the given MultiDataSetIterator
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public void fit ( MultiDataSet multiDataSet ) { fit ( multiDataSet . getFeatures ( ) , multiDataSet . getLabels ( ) , multiDataSet . getFeaturesMaskArrays ( ) , multiDataSet . getLabelsMaskArrays ( ) ) ; if ( multiDataSet . hasMaskArrays ( ) ) clearLayerMaskArrays ( ) ; }
Fit the ComputationGraph using a MultiDataSet
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public void fit ( INDArray [ ] inputs , INDArray [ ] labels ) { fit ( inputs , labels , null , null ) ; }
Fit the ComputationGraph given arrays of inputs and labels .
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public Map < String , INDArray > feedForward ( INDArray input , boolean train ) { if ( numInputArrays != 1 ) throw new UnsupportedOperationException ( "Cannot feedForward with single input for graph network with " + numInputArrays + " expected inputs" ) ; setInput ( 0 , input ) ; return feedForward ( train ) ; }
Conduct forward pass using a single input array . Note that this method can only be used with ComputationGraphs with a single input array .
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public INDArray [ ] output ( List < String > layers , boolean train , INDArray [ ] features , INDArray [ ] featureMasks ) { Preconditions . checkState ( layers != null && layers . size ( ) > 0 , "Layers must not be null: got later names %s" , layers ) ; int [ ] layerNums = new int [ layers . size ( ) ] ; for ( int i = ...
Get the activations for the specific layers only
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public Gradient backpropGradient ( INDArray ... epsilons ) { if ( epsilons == null || epsilons . length != numOutputArrays ) throw new IllegalArgumentException ( "Invalid input: must have epsilons length equal to number of output arrays" ) ; try { calcBackpropGradients ( true , configuration . getBackpropType ( ) == Ba...
Calculate the gradient of the network with respect to some external errors . Note that this is typically used for things like reinforcement learning not typical networks that include an OutputLayer or RnnOutputLayer
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public ComputationGraphUpdater getUpdater ( boolean initializeIfAbsent ) { if ( solver == null && initializeIfAbsent ) { solver = new Solver . Builder ( ) . configure ( conf ( ) ) . listeners ( getListeners ( ) ) . model ( this ) . build ( ) ; solver . getOptimizer ( ) . setUpdaterComputationGraph ( new ComputationGrap...
Get the ComputationGraphUpdater for this network
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public void setUpdater ( ComputationGraphUpdater updater ) { if ( solver == null ) { solver = new Solver . Builder ( ) . configure ( conf ( ) ) . listeners ( getListeners ( ) ) . model ( this ) . build ( ) ; } solver . getOptimizer ( ) . setUpdaterComputationGraph ( updater ) ; }
Set the computationGraphUpdater for the network
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public INDArray params ( boolean backwardOnly ) { if ( backwardOnly ) return flattenedParams ; List < INDArray > list = new ArrayList < > ( layers . length ) ; for ( int i = 0 ; i < topologicalOrder . length ; i ++ ) { if ( ! vertices [ topologicalOrder [ i ] ] . hasLayer ( ) ) continue ; Layer l = vertices [ topologic...
Get the parameters for the ComputationGraph
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protected void doTruncatedBPTT ( INDArray [ ] inputs , INDArray [ ] labels , INDArray [ ] featureMasks , INDArray [ ] labelMasks , LayerWorkspaceMgr workspaceMgr ) { if ( flattenedGradients == null ) { initGradientsView ( ) ; } long timeSeriesLength = - 1 ; for ( INDArray in : inputs ) { if ( in . rank ( ) != 3 ) conti...
Fit the network using truncated BPTT
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protected void rnnUpdateStateWithTBPTTState ( ) { for ( int i = 0 ; i < layers . length ; i ++ ) { if ( layers [ i ] instanceof RecurrentLayer ) { RecurrentLayer l = ( ( RecurrentLayer ) layers [ i ] ) ; l . rnnSetPreviousState ( l . rnnGetTBPTTState ( ) ) ; } else if ( layers [ i ] instanceof MultiLayerNetwork ) { ( (...
Update the internal state of RNN layers after a truncated BPTT fit call
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public void clearLayersStates ( ) { for ( Layer layer : layers ) { layer . clear ( ) ; layer . clearNoiseWeightParams ( ) ; } for ( GraphVertex vertex : vertices ) { vertex . clearVertex ( ) ; } }
This method just makes sure there s no state preserved within layers
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public static int countUnique ( Collection < ? > collection ) { HashSet < Object > set = new HashSet < > ( collection ) ; return set . size ( ) ; }
Count the number of unique values in a collection