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public static < T > List < T > getUnique ( Collection < T > collection ) { HashSet < T > set = new HashSet < > ( ) ; List < T > out = new ArrayList < > ( ) ; for ( T t : collection ) { if ( ! set . contains ( t ) ) { out . add ( t ) ; set . add ( t ) ; } } return out ; }
Returns a list containing only unique values in a collection
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public long numParams ( ) { int ret = 0 ; for ( INDArray val : params . values ( ) ) ret += val . length ( ) ; return ret ; }
The number of parameters for the model
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public void add ( Chromosome element ) { if ( population . size ( ) == populationSize ) { cullOperator . cullPopulation ( ) ; } population . add ( element ) ; Collections . sort ( population , chromosomeComparator ) ; triggerPopulationChangedListeners ( population ) ; }
Add a Chromosome to the population and call the PopulationListeners . Culling may be triggered .
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public INDArray readDataSet ( String datasetName , String ... groups ) throws UnsupportedKerasConfigurationException { synchronized ( Hdf5Archive . LOCK_OBJECT ) { if ( groups . length == 0 ) return readDataSet ( this . file , datasetName ) ; Group [ ] groupArray = openGroups ( groups ) ; INDArray a = readDataSet ( gro...
Read data set as ND4J array from group path .
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public String readAttributeAsJson ( String attributeName , String ... groups ) throws UnsupportedKerasConfigurationException { synchronized ( Hdf5Archive . LOCK_OBJECT ) { if ( groups . length == 0 ) { Attribute a = this . file . openAttribute ( attributeName ) ; String s = readAttributeAsJson ( a ) ; a . deallocate ( ...
Read JSON - formatted string attribute from group path .
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public boolean hasAttribute ( String attributeName , String ... groups ) { synchronized ( Hdf5Archive . LOCK_OBJECT ) { if ( groups . length == 0 ) return this . file . attrExists ( attributeName ) ; Group [ ] groupArray = openGroups ( groups ) ; boolean b = groupArray [ groupArray . length - 1 ] . attrExists ( attribu...
Check whether group path contains string attribute .
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public List < String > getDataSets ( String ... groups ) { synchronized ( Hdf5Archive . LOCK_OBJECT ) { if ( groups . length == 0 ) return getObjects ( this . file , H5O_TYPE_DATASET ) ; Group [ ] groupArray = openGroups ( groups ) ; List < String > ls = getObjects ( groupArray [ groupArray . length - 1 ] , H5O_TYPE_DA...
Get list of data sets from group path .
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public List < String > getGroups ( String ... groups ) { synchronized ( Hdf5Archive . LOCK_OBJECT ) { if ( groups . length == 0 ) return getObjects ( this . file , H5O_TYPE_GROUP ) ; Group [ ] groupArray = openGroups ( groups ) ; List < String > ls = getObjects ( groupArray [ groupArray . length - 1 ] , H5O_TYPE_GROUP ...
Get list of groups from group path .
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private List < String > getObjects ( Group fileGroup , int objType ) { synchronized ( Hdf5Archive . LOCK_OBJECT ) { List < String > groups = new ArrayList < > ( ) ; for ( int i = 0 ; i < fileGroup . getNumObjs ( ) ; i ++ ) { BytePointer objPtr = fileGroup . getObjnameByIdx ( i ) ; if ( fileGroup . childObjType ( objPtr...
Get list of objects with a given type from a file group .
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private String readAttributeAsJson ( Attribute attribute ) throws UnsupportedKerasConfigurationException { synchronized ( Hdf5Archive . LOCK_OBJECT ) { VarLenType vl = attribute . getVarLenType ( ) ; int bufferSizeMult = 1 ; String s ; while ( true ) { byte [ ] attrBuffer = new byte [ bufferSizeMult * 2000 ] ; BytePoin...
Read JSON - formatted string attribute .
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private String readAttributeAsString ( Attribute attribute ) throws UnsupportedKerasConfigurationException { synchronized ( Hdf5Archive . LOCK_OBJECT ) { VarLenType vl = attribute . getVarLenType ( ) ; int bufferSizeMult = 1 ; String s = null ; while ( true ) { byte [ ] attrBuffer = new byte [ bufferSizeMult * 2000 ] ;...
Read attribute as string .
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public String readAttributeAsFixedLengthString ( String attributeName , int bufferSize ) throws UnsupportedKerasConfigurationException { synchronized ( Hdf5Archive . LOCK_OBJECT ) { Attribute a = this . file . openAttribute ( attributeName ) ; String s = readAttributeAsFixedLengthString ( a , bufferSize ) ; a . dealloc...
Read string attribute from group path .
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private String readAttributeAsFixedLengthString ( Attribute attribute , int bufferSize ) throws UnsupportedKerasConfigurationException { synchronized ( Hdf5Archive . LOCK_OBJECT ) { VarLenType vl = attribute . getVarLenType ( ) ; byte [ ] attrBuffer = new byte [ bufferSize ] ; BytePointer attrPointer = new BytePointer ...
Read attribute of fixed buffer size as string .
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public INDArray reducedBasis ( double variance ) { INDArray vars = Transforms . pow ( eigenvalues , - 0.5 , true ) ; double res = vars . sumNumber ( ) . doubleValue ( ) ; double total = 0.0 ; int ndims = 0 ; for ( int i = 0 ; i < vars . columns ( ) ; i ++ ) { ndims ++ ; total += vars . getDouble ( i ) ; if ( total / re...
Return a reduced basis set that covers a certain fraction of the variance of the data
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public INDArray convertToComponents ( INDArray data ) { INDArray dx = data . subRowVector ( mean ) ; return Nd4j . tensorMmul ( eigenvectors . transpose ( ) , dx , new int [ ] [ ] { { 1 } , { 1 } } ) . transposei ( ) ; }
Takes a set of data on each row with the same number of features as the constructing data and returns the data in the coordinates of the basis set about the mean .
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public INDArray convertBackToFeatures ( INDArray data ) { return Nd4j . tensorMmul ( eigenvectors , data , new int [ ] [ ] { { 1 } , { 1 } } ) . transposei ( ) . addiRowVector ( mean ) ; }
Take the data that has been transformed to the principal components about the mean and transform it back into the original feature set . Make sure to fill in zeroes in columns where components were dropped!
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public static INDArray pca ( INDArray A , int nDims , boolean normalize ) { INDArray factor = pca_factor ( A , nDims , normalize ) ; return A . mmul ( factor ) ; }
Calculates pca vectors of a matrix for a flags number of reduced features returns the reduced feature set The return is a projection of A onto principal nDims components
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public static INDArray pca_factor ( INDArray A , int nDims , boolean normalize ) { if ( normalize ) { INDArray mean = A . mean ( 0 ) ; A . subiRowVector ( mean ) ; } long m = A . rows ( ) ; long n = A . columns ( ) ; INDArray s = Nd4j . create ( A . dataType ( ) , m < n ? m : n ) ; INDArray VT = Nd4j . create ( A . dat...
Calculates pca factors of a matrix for a flags number of reduced features returns the factors to scale observations
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public static INDArray pca2 ( INDArray in , double variance ) { INDArray [ ] covmean = covarianceMatrix ( in ) ; INDArray [ ] pce = principalComponents ( covmean [ 0 ] ) ; INDArray vars = Transforms . pow ( pce [ 1 ] , - 0.5 , true ) ; double res = vars . sumNumber ( ) . doubleValue ( ) ; double total = 0.0 ; int ndims...
This method performs a dimensionality reduction including principal components that cover a fraction of the total variance of the system . It does all calculations about the mean .
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public String timestamp ( ) { float totalSeconds = this . length ( ) ; float second = totalSeconds % 60 ; int minute = ( int ) totalSeconds / 60 % 60 ; int hour = ( int ) ( totalSeconds / 3600 ) ; StringBuilder sb = new StringBuilder ( ) ; if ( hour > 0 ) { sb . append ( hour + ":" ) ; } if ( minute > 0 ) { sb . append...
Timestamp of the wave length
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public byte [ ] getFingerprintFromFile ( String fingerprintFile ) { byte [ ] fingerprint = null ; try { InputStream fis = new FileInputStream ( fingerprintFile ) ; fingerprint = getFingerprintFromInputStream ( fis ) ; fis . close ( ) ; } catch ( IOException e ) { e . printStackTrace ( ) ; } return fingerprint ; }
Get bytes from fingerprint file
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public byte [ ] getFingerprintFromInputStream ( InputStream inputStream ) { byte [ ] fingerprint = null ; try { fingerprint = new byte [ inputStream . available ( ) ] ; inputStream . read ( fingerprint ) ; } catch ( IOException e ) { e . printStackTrace ( ) ; } return fingerprint ; }
Get bytes from fingerprint inputstream
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public void saveFingerprintAsFile ( byte [ ] fingerprint , String filename ) { FileOutputStream fileOutputStream ; try { fileOutputStream = new FileOutputStream ( filename ) ; fileOutputStream . write ( fingerprint ) ; fileOutputStream . close ( ) ; } catch ( IOException e ) { e . printStackTrace ( ) ; } }
Save fingerprint to a file
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protected ArrayList < String > getLabels ( String textResource ) throws IOException { ArrayList < String > labels = new ArrayList < > ( ) ; File resourceFile = getResourceFile ( ) ; try ( InputStream is = new BufferedInputStream ( new FileInputStream ( resourceFile ) ) ; Scanner s = new Scanner ( is ) ) { while ( s . h...
Returns labels based on the text file resource .
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public void setPoints ( int [ ] points ) { this . points = new ArrayList < > ( ) ; for ( int i = 0 ; i < points . length ; i ++ ) { this . points . add ( points [ i ] ) ; } }
Sets Huffman tree points
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public void printAvailableCompressors ( ) { StringBuilder builder = new StringBuilder ( ) ; builder . append ( "Available compressors: " ) ; for ( String comp : codecs . keySet ( ) ) { builder . append ( "[" ) . append ( comp ) . append ( "] " ) ; } System . out . println ( builder . toString ( ) ) ; }
Prints available compressors to standard out
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public DataBuffer compress ( DataBuffer buffer , String algorithm ) { algorithm = algorithm . toUpperCase ( ) ; if ( ! codecs . containsKey ( algorithm ) ) throw new RuntimeException ( "Non-existent compression algorithm requested: [" + algorithm + "]" ) ; return codecs . get ( algorithm ) . compress ( buffer ) ; }
Compress the data buffer given a specified algorithm
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public INDArray compress ( INDArray array , String algorithm ) { algorithm = algorithm . toUpperCase ( ) ; if ( ! codecs . containsKey ( algorithm ) ) throw new RuntimeException ( "Non-existent compression algorithm requested: [" + algorithm + "]" ) ; return codecs . get ( algorithm ) . compress ( array ) ; }
Returns a compressed version of the given ndarray
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public DataBuffer decompress ( DataBuffer buffer , DataType targetType ) { if ( buffer . dataType ( ) != DataType . COMPRESSED ) throw new IllegalStateException ( "You can't decompress DataBuffer with dataType of: " + buffer . dataType ( ) ) ; CompressedDataBuffer comp = ( CompressedDataBuffer ) buffer ; CompressionDes...
Decompress the given databuffer
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public void decompressi ( INDArray array ) { if ( array . data ( ) . dataType ( ) != DataType . COMPRESSED ) return ; val comp = ( CompressedDataBuffer ) array . data ( ) ; val descriptor = comp . getCompressionDescriptor ( ) ; if ( ! codecs . containsKey ( descriptor . getCompressionAlgorithm ( ) ) ) throw new Runtime...
in place decompression of the given ndarray . If the ndarray isn t compressed this will do nothing
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public void overrideMinorityDefault ( int index ) { if ( targetMinorityDistMap . containsKey ( index ) ) { minorityLabelMap . put ( index , 0 ) ; } else { throw new IllegalArgumentException ( "Index specified is not contained in the target minority distribution map specified with the preprocessor. Map contains " + Arra...
Will change the default minority label from 1 to 0 and correspondingly the majority class from 0 to 1 for the label at the index specified
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public static void convert ( RecordReader reader , RecordWriter writer ) throws IOException { convert ( reader , writer , true ) ; }
Write all values from the specified record reader to the specified record writer . Closes the record writer on completion
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public static void convert ( RecordReader reader , RecordWriter writer , boolean closeOnCompletion ) throws IOException { if ( ! reader . hasNext ( ) ) { throw new UnsupportedOperationException ( "Cannot convert RecordReader: reader has no next element" ) ; } while ( reader . hasNext ( ) ) { writer . write ( reader . n...
Write all values from the specified record reader to the specified record writer . Optionally close the record writer on completion
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public static LayerConstraint mapConstraint ( String kerasConstraint , KerasLayerConfiguration conf , Map < String , Object > constraintConfig ) throws UnsupportedKerasConfigurationException { LayerConstraint constraint ; if ( kerasConstraint . equals ( conf . getLAYER_FIELD_MINMAX_NORM_CONSTRAINT ( ) ) || kerasConstra...
Map Keras to DL4J constraint .
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public static LayerConstraint getConstraintsFromConfig ( Map < String , Object > layerConfig , String constraintField , KerasLayerConfiguration conf , int kerasMajorVersion ) throws InvalidKerasConfigurationException , UnsupportedKerasConfigurationException { Map < String , Object > innerConfig = KerasLayerUtils . getI...
Get constraint initialization from Keras layer configuration .
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protected static < T extends IEvaluation > T attempFromLegacyFromJson ( String json , IllegalArgumentException originalException ) { if ( json . contains ( "org.deeplearning4j.eval.Evaluation" ) ) { String newJson = json . replaceAll ( "org.deeplearning4j.eval.Evaluation" , "org.nd4j.evaluation.classification.Evaluatio...
Attempt to load DL4J IEvaluation JSON from 1 . 0 . 0 - beta2 or earlier . Given IEvaluation classes were moved to ND4J with no major changes a simple find and replace for the class names is used .
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public void shuffle ( INDArray array , Random rnd , int ... dimension ) { shuffle ( Collections . singletonList ( array ) , rnd , dimension ) ; }
In place shuffle of an ndarray along a specified set of dimensions
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public static void crashDumpOutputDirectory ( File rootDir ) { if ( rootDir == null ) { String userDir = System . getProperty ( "user.dir" ) ; if ( userDir == null ) { userDir = "" ; } crashDumpRootDirectory = new File ( userDir ) ; return ; } crashDumpRootDirectory = rootDir ; }
Method that can be use to customize the output directory for memory crash reporting . By default the current working directory will be used .
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public static double getWeightRegularizerFromConfig ( Map < String , Object > layerConfig , KerasLayerConfiguration conf , String configField , String regularizerType ) throws UnsupportedKerasConfigurationException , InvalidKerasConfigurationException { Map < String , Object > innerConfig = KerasLayerUtils . getInnerLa...
Get weight regularization from Keras weight regularization configuration .
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public Map < String , long [ ] > getParamShapes ( ) { Map < String , long [ ] > map = new LinkedHashMap < > ( ) ; map . putAll ( weightParams ) ; map . putAll ( biasParams ) ; return map ; }
Get the parameter shapes for all parameters
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public Configuration getConfiguration ( ) { try { globalLock . readLock ( ) . lock ( ) ; return configuration ; } finally { globalLock . readLock ( ) . unlock ( ) ; } }
Returns current Allocator configuration
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public Pointer getPointer ( DataBuffer buffer , AllocationShape shape , boolean isView , CudaContext context ) { return memoryHandler . getDevicePointer ( buffer , context ) ; }
This method returns actual device pointer valid for specified shape of current object
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public Pointer getPointer ( INDArray array , CudaContext context ) { if ( array . isEmpty ( ) ) return null ; return memoryHandler . getDevicePointer ( array . data ( ) , context ) ; }
This method returns actual device pointer valid for specified INDArray
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public Pointer getHostPointer ( INDArray array ) { if ( array . isEmpty ( ) ) return null ; synchronizeHostData ( array ) ; return memoryHandler . getHostPointer ( array . data ( ) ) ; }
This method returns actual host pointer valid for current object
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public void freeMemory ( AllocationPoint point ) { if ( point . getAllocationStatus ( ) == AllocationStatus . DEVICE ) { this . getMemoryHandler ( ) . getMemoryProvider ( ) . free ( point ) ; point . setAllocationStatus ( AllocationStatus . HOST ) ; this . getMemoryHandler ( ) . getMemoryProvider ( ) . free ( point ) ;...
This method releases memory allocated for this allocation point
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public AllocationPoint allocateMemory ( DataBuffer buffer , AllocationShape requiredMemory , boolean initialize ) { AllocationPoint point = null ; if ( configuration . getMemoryModel ( ) == Configuration . MemoryModel . IMMEDIATE ) { point = allocateMemory ( buffer , requiredMemory , memoryHandler . getInitialLocation ...
This method allocates required chunk of memory
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protected synchronized long seekUnusedZero ( Long bucketId , Aggressiveness aggressiveness ) { AtomicLong freeSpace = new AtomicLong ( 0 ) ; int totalElements = ( int ) memoryHandler . getAllocatedHostObjects ( bucketId ) ; float shortAverage = zeroShort . getAverage ( ) ; float longAverage = zeroLong . getAverage ( ) ...
This method seeks for unused zero - copy memory allocations
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protected long seekUnusedDevice ( Long threadId , Integer deviceId , Aggressiveness aggressiveness ) { AtomicLong freeSpace = new AtomicLong ( 0 ) ; float shortAverage = deviceShort . getAverage ( ) ; float longAverage = deviceLong . getAverage ( ) ; float shortThreshold = shortAverage / ( Aggressiveness . values ( ) ....
This method seeks for unused device memory allocations for specified thread and device
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public void memcpyAsync ( DataBuffer dstBuffer , Pointer srcPointer , long length , long dstOffset ) { this . memoryHandler . memcpyAsync ( dstBuffer , srcPointer , length , dstOffset ) ; }
This method implements asynchronous memcpy if that s available on current hardware
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public void memcpy ( DataBuffer dstBuffer , DataBuffer srcBuffer ) { this . memoryHandler . memcpy ( dstBuffer , srcBuffer ) ; }
This method implements blocking memcpy
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public List < String > asLabels ( ) { List < String > labels = new ArrayList < > ( ) ; for ( T element : getElements ( ) ) { labels . add ( element . getLabel ( ) ) ; } return labels ; }
Returns this sequence as list of labels
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public Pair < List < String > , AtomicLong > call ( List < String > lstOfWords ) throws Exception { List < String > stops = stopWords . getValue ( ) ; Counter < String > counter = new Counter < > ( ) ; for ( String w : lstOfWords ) { if ( w . isEmpty ( ) ) continue ; if ( ! stops . isEmpty ( ) ) { if ( stops . contains...
Function to add to word freq counter and total count of words
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public void addHook ( TrainingHook trainingHook ) { if ( trainingHookList == null ) { trainingHookList = new ArrayList < > ( ) ; } trainingHookList . add ( trainingHook ) ; }
Add a hook for the master for pre and post training
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public DataType nd4jTypeFromOnnxType ( OnnxProto3 . TensorProto . DataType dataType ) { switch ( dataType ) { case DOUBLE : return DataType . DOUBLE ; case FLOAT : return DataType . FLOAT ; case FLOAT16 : return DataType . HALF ; case INT32 : case INT64 : return DataType . INT ; default : return DataType . UNKNOWN ; } ...
Convert an onnx type to the proper nd4j type
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public static double toClassifierPrediction ( Vector vector ) { double max = Double . NEGATIVE_INFINITY ; int maxIndex = 0 ; for ( int i = 0 ; i < vector . size ( ) ; i ++ ) { double curr = vector . apply ( i ) ; if ( curr > max ) { maxIndex = i ; max = curr ; } } return maxIndex ; }
This is for the edge case where you have a single output layer and need to convert the output layer to an index
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public static LabeledPoint pointOf ( Collection < Writable > writables ) { double [ ] ret = new double [ writables . size ( ) - 1 ] ; int count = 0 ; double target = 0 ; for ( Writable w : writables ) { if ( count < writables . size ( ) - 1 ) ret [ count ++ ] = Float . parseFloat ( w . toString ( ) ) ; else target = Fl...
Returns a labeled point of the writables where the final item is the point and the rest of the items are features
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public static JavaRDD < DataSet > fromLabeledPoint ( JavaRDD < LabeledPoint > data , final long numPossibleLabels , long batchSize ) { JavaRDD < DataSet > mappedData = data . map ( new Function < LabeledPoint , DataSet > ( ) { public DataSet call ( LabeledPoint lp ) { return fromLabeledPoint ( lp , numPossibleLabels ) ...
Convert an rdd of labeled point based on the specified batch size in to data set
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public static JavaRDD < DataSet > fromLabeledPoint ( JavaSparkContext sc , JavaRDD < LabeledPoint > data , final long numPossibleLabels ) { return data . map ( new Function < LabeledPoint , DataSet > ( ) { public DataSet call ( LabeledPoint lp ) { return fromLabeledPoint ( lp , numPossibleLabels ) ; } } ) ; }
From labeled point
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public static JavaRDD < DataSet > fromContinuousLabeledPoint ( JavaSparkContext sc , JavaRDD < LabeledPoint > data ) { return data . map ( new Function < LabeledPoint , DataSet > ( ) { public DataSet call ( LabeledPoint lp ) { return convertToDataset ( lp ) ; } } ) ; }
Convert rdd labeled points to a rdd dataset with continuous features
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private static List < LabeledPoint > toLabeledPoint ( List < DataSet > labeledPoints ) { List < LabeledPoint > ret = new ArrayList < > ( ) ; for ( DataSet point : labeledPoints ) { ret . add ( toLabeledPoint ( point ) ) ; } return ret ; }
Convert a list of dataset in to a list of labeled points
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public static JavaRDD < DataSet > fromContinuousLabeledPoint ( JavaRDD < LabeledPoint > data , boolean preCache ) { if ( preCache && ! data . getStorageLevel ( ) . useMemory ( ) ) { data . cache ( ) ; } return data . map ( new Function < LabeledPoint , DataSet > ( ) { public DataSet call ( LabeledPoint lp ) { return co...
Converts a continuous JavaRDD LabeledPoint to a JavaRDD DataSet .
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public static JavaRDD < DataSet > fromLabeledPoint ( JavaRDD < LabeledPoint > data , final long numPossibleLabels ) { return fromLabeledPoint ( data , numPossibleLabels , false ) ; }
Converts JavaRDD labeled points to JavaRDD datasets .
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public static JavaRDD < DataSet > fromLabeledPoint ( JavaRDD < LabeledPoint > data , final long numPossibleLabels , boolean preCache ) { if ( preCache && ! data . getStorageLevel ( ) . useMemory ( ) ) { data . cache ( ) ; } return data . map ( new Function < LabeledPoint , DataSet > ( ) { public DataSet call ( LabeledP...
Converts JavaRDD labeled points to JavaRDD DataSets .
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public static JavaRDD < LabeledPoint > fromDataSet ( JavaRDD < DataSet > data , boolean preCache ) { if ( preCache && ! data . getStorageLevel ( ) . useMemory ( ) ) { data . cache ( ) ; } return data . map ( new Function < DataSet , LabeledPoint > ( ) { public LabeledPoint call ( DataSet dataSet ) { return toLabeledPoi...
Convert an rdd of data set in to labeled point .
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public static Constructor < ? > getEmptyConstructor ( Class < ? > clazz ) { Constructor < ? > c = clazz . getDeclaredConstructors ( ) [ 0 ] ; for ( int i = 0 ; i < clazz . getDeclaredConstructors ( ) . length ; i ++ ) { if ( clazz . getDeclaredConstructors ( ) [ i ] . getParameterTypes ( ) . length < 1 ) { c = clazz . ...
Gets the empty constructor from a class
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public static void setProperties ( Object obj , Properties props ) throws Exception { for ( Field field : obj . getClass ( ) . getDeclaredFields ( ) ) { field . setAccessible ( true ) ; if ( props . containsKey ( field . getName ( ) ) ) { set ( field , obj , props . getProperty ( field . getName ( ) ) ) ; } } }
Sets the properties of the given object
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public static Properties getFieldsAsProperties ( Object obj , Class < ? > [ ] clazzes ) throws Exception { Properties props = new Properties ( ) ; for ( Field field : obj . getClass ( ) . getDeclaredFields ( ) ) { if ( Modifier . isStatic ( field . getModifiers ( ) ) ) continue ; field . setAccessible ( true ) ; Class ...
Get fields as properties
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public boolean pingDeviceForFreeMemory ( Integer deviceId , long requiredMemory ) { long freeMem = nativeOps . getDeviceFreeMemory ( - 1 ) ; if ( freeMem - requiredMemory < DEVICE_RESERVED_SPACE ) return false ; else return true ; }
This method checks specified device for specified amount of memory
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public void plotVocab ( BarnesHutTsne tsne , int numWords , UiConnectionInfo connectionInfo ) { try { final List < String > labels = fitTnseAndGetLabels ( tsne , numWords ) ; final INDArray reducedData = tsne . getData ( ) ; StringBuilder sb = new StringBuilder ( ) ; for ( int i = 0 ; i < reducedData . rows ( ) && i < ...
Render the words via TSNE
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public void putVector ( String word , INDArray vector ) { if ( word == null ) throw new IllegalArgumentException ( "No null words allowed" ) ; if ( vector == null ) throw new IllegalArgumentException ( "No null vectors allowed" ) ; int idx = vocab . indexOf ( word ) ; syn0 . slice ( idx ) . assign ( vector ) ; }
Inserts a word vector
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public void consume ( InMemoryLookupTable < T > srcTable ) { if ( srcTable . vectorLength != this . vectorLength ) throw new IllegalStateException ( "You can't consume lookupTable with different vector lengths" ) ; if ( srcTable . syn0 == null ) throw new IllegalStateException ( "Source lookupTable Syn0 is NULL" ) ; th...
This method consumes weights of a given InMemoryLookupTable
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public void initializeInstance ( PopulationModel populationModel ) { super . initializeInstance ( populationModel ) ; parentSelection . initializeInstance ( populationModel . getPopulation ( ) ) ; }
Will be called by the selection operator once the population model is instantiated .
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public short [ ] interpolate ( int oldSampleRate , int newSampleRate , short [ ] samples ) { if ( oldSampleRate == newSampleRate ) { return samples ; } int newLength = Math . round ( ( ( float ) samples . length / oldSampleRate * newSampleRate ) ) ; float lengthMultiplier = ( float ) newLength / samples . length ; shor...
Do interpolation on the samples according to the original and destinated sample rates
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public static < T > Set < T > intersection ( Collection < T > parentCollection , Collection < T > removeFromCollection ) { Set < T > results = new HashSet < > ( parentCollection ) ; results . retainAll ( removeFromCollection ) ; return results ; }
Set specific operations
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public static < T > Set < T > difference ( Collection < ? extends T > s1 , Collection < ? extends T > s2 ) { Set < T > s3 = new HashSet < > ( s1 ) ; s3 . removeAll ( s2 ) ; return s3 ; }
Return is s1 \ s2
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@ SuppressWarnings ( "unchecked" ) public static < T > T readObject ( InputStream is ) { try { ObjectInputStream ois = new ObjectInputStream ( is ) ; T ret = ( T ) ois . readObject ( ) ; ois . close ( ) ; return ret ; } catch ( Exception e ) { throw new RuntimeException ( e ) ; } }
Reads an object from the given input stream
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public static byte [ ] toByteArray ( Serializable toSave ) { try { ByteArrayOutputStream bos = new ByteArrayOutputStream ( ) ; ObjectOutputStream os = new ObjectOutputStream ( bos ) ; os . writeObject ( toSave ) ; byte [ ] ret = bos . toByteArray ( ) ; os . close ( ) ; return ret ; } catch ( Exception e ) { throw new R...
Converts the given object to a byte array
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public static void writeObject ( Serializable toSave , OutputStream writeTo ) { try { ObjectOutputStream os = new ObjectOutputStream ( writeTo ) ; os . writeObject ( toSave ) ; } catch ( Exception e ) { throw new RuntimeException ( e ) ; } }
Writes the object to the output stream THIS DOES NOT FLUSH THE STREAM
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public void initialize ( InputSplit split ) throws IOException , InterruptedException { super . initialize ( split ) ; this . iter = getIterator ( 0 ) ; this . initialized = true ; }
Using String as StandardCharsets . UTF_8 is not serializable
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public static < K , V > CounterMap < K , V > parallelCounterMap ( ) { CounterMap < K , V > totalWords = new CounterMap < > ( ) ; return totalWords ; }
Returns a thread safe counter map
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public void apply ( GloveWeightLookupTable table ) { table . getBias ( ) . putScalar ( w1 . getIndex ( ) , table . getBias ( ) . getDouble ( w1 . getIndex ( ) ) - w1BiasUpdate ) ; table . getBias ( ) . putScalar ( w2 . getIndex ( ) , table . getBias ( ) . getDouble ( w2 . getIndex ( ) ) - w2BiasUpdate ) ; table . getSy...
Apply the changes to the table
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public void set ( T value ) { try { lock . writeLock ( ) . lock ( ) ; this . value = value ; } finally { lock . writeLock ( ) . unlock ( ) ; } }
This method assigns new value
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public boolean cas ( T expected , T newValue ) { try { lock . writeLock ( ) . lock ( ) ; if ( Objects . equals ( value , expected ) ) { this . value = newValue ; return true ; } else return false ; } finally { lock . writeLock ( ) . unlock ( ) ; } }
This method implements compare - and - swap
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protected ImageWritable doTransform ( ImageWritable image , Random random ) { if ( image == null ) { return null ; } Mat mat = converter . convert ( image . getFrame ( ) ) ; Mat box = new Mat ( height , width , mat . type ( ) ) ; box . put ( borderValue ) ; x = ( mat . cols ( ) - width ) / 2 ; y = ( mat . rows ( ) - he...
Takes an image and returns a boxed version of the image .
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public static INDArray pooling2D ( INDArray img , int kh , int kw , int sy , int sx , int ph , int pw , int dh , int dw , boolean isSameMode , Pooling2D . Pooling2DType type , Pooling2D . Divisor divisor , double extra , int virtualHeight , int virtualWidth , INDArray out ) { Pooling2D pooling = Pooling2D . builder ( )...
Pooling 2d implementation
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public static int outSize ( int size , int k , int s , int p , int dilation , boolean coverAll ) { k = effectiveKernelSize ( k , dilation ) ; if ( coverAll ) return ( size + p * 2 - k + s - 1 ) / s + 1 ; else return ( size + p * 2 - k ) / s + 1 ; }
The out size for a convolution
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public static INDArray conv2d ( INDArray input , INDArray kernel , Type type ) { return Nd4j . getConvolution ( ) . conv2d ( input , kernel , type ) ; }
2d convolution ( aka the last 2 dimensions
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public static long [ ] dataBufferToArray ( DataBuffer buffer ) { int rank = buffer . getInt ( 0 ) ; val ret = new long [ Shape . shapeInfoLength ( rank ) ] ; ret [ 0 ] = rank ; for ( int e = 1 ; e < Shape . shapeInfoLength ( rank ) ; e ++ ) { ret [ e ] = buffer . getInt ( e ) ; } return ret ; }
Obtain the values from the shape buffer for the array
19,388
public static OptimizationConfiguration fromYaml ( String json ) { try { return JsonMapper . getYamlMapper ( ) . readValue ( json , OptimizationConfiguration . class ) ; } catch ( IOException e ) { throw new RuntimeException ( e ) ; } }
Create an optimization configuration from the json
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public double calculateAverageAuc ( ) { double ret = 0.0 ; for ( int i = 0 ; i < numLabels ( ) ; i ++ ) { ret += calculateAUC ( i ) ; } return ret / ( double ) numLabels ( ) ; }
Macro - average AUC for all outcomes
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public static Consumer < Subscription > subscriberLoop ( final FragmentHandler fragmentHandler , final int limit , final AtomicBoolean running , final AtomicBoolean launched ) { final IdleStrategy idleStrategy = new BusySpinIdleStrategy ( ) ; return subscriberLoop ( fragmentHandler , limit , running , idleStrategy , la...
Return a reusable parametrized event loop that calls a default idler when no messages are received
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public static Consumer < Subscription > subscriberLoop ( final FragmentHandler fragmentHandler , final int limit , final AtomicBoolean running , final IdleStrategy idleStrategy , final AtomicBoolean launched ) { return ( subscription ) -> { try { while ( running . get ( ) ) { idleStrategy . idle ( subscription . poll (...
Return a reusable parameterized event loop that calls and idler when no messages are received
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public static void printAvailableImage ( final Image image ) { final Subscription subscription = image . subscription ( ) ; System . out . println ( String . format ( "Available image on %s streamId=%d sessionId=%d from %s" , subscription . channel ( ) , subscription . streamId ( ) , image . sessionId ( ) , image . sou...
Print the information for an available image to stdout .
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protected static int [ ] adaptForTensorDescr ( int [ ] shapeOrStrides ) { if ( shapeOrStrides . length >= 4 ) return shapeOrStrides ; int [ ] out = new int [ 4 ] ; int i = 0 ; for ( ; i < shapeOrStrides . length ; i ++ ) { out [ i ] = shapeOrStrides [ i ] ; } for ( ; i < 4 ; i ++ ) { out [ i ] = 1 ; } return out ; }
From CuDNN documentation - Tensors are restricted to having at least 4 dimensions ... When working with lower dimensional data it is recommended that the user create a 4Dtensor and set the size along unused dimensions to 1 .
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protected void checkBufferCoherence ( ) { if ( values . length ( ) < length ) { throw new IllegalStateException ( "nnz is larger than capacity of buffers" ) ; } if ( values . length ( ) * rank ( ) != indices . length ( ) ) { throw new IllegalArgumentException ( "Sizes of values, indices and shape are incoherent." ) ; }...
Check that the length of indices and values are coherent and matches the rank of the matrix .
19,395
protected static DataBuffer createSparseInformationBuffer ( int rank ) { int [ ] flags = new int [ rank ] ; long [ ] sparseOffsets = new long [ rank ] ; int [ ] hiddenDimension = new int [ ] { - 1 } ; return Nd4j . getSparseInfoProvider ( ) . createSparseInformation ( flags , sparseOffsets , hiddenDimension , rank ) ; ...
Create a SparseInfo databuffer given rank if of the sparse matrix .
19,396
protected static DataBuffer createValueBuffer ( float [ ] values ) { checkNotNull ( values ) ; if ( values . length == 0 ) { return Nd4j . createBuffer ( 1 ) ; } return Nd4j . createBuffer ( values ) ; }
Create a DataBuffer for values of given array of values .
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protected static DataBuffer createIndiceBuffer ( long [ ] [ ] indices , long [ ] shape ) { checkNotNull ( indices ) ; checkNotNull ( shape ) ; if ( indices . length == 0 ) { return Nd4j . getDataBufferFactory ( ) . createLong ( shape . length ) ; } if ( indices . length == shape . length ) { return Nd4j . createBuffer ...
Create a DataBuffer for indices of given arrays of indices .
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public long [ ] translateToPhysical ( long [ ] virtualIndexes ) { long [ ] physicalIndexes = new long [ underlyingRank ( ) ] ; int idxPhy = 0 ; int hidden = 0 ; for ( int idxVir = 0 ; idxVir < virtualIndexes . length ; idxVir ++ ) { if ( hidden < getNumHiddenDimension ( ) && hiddenDimensions ( ) [ hidden ] == idxVir ) ...
Translate the view index to the corresponding index of the original ndarray
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public void addOrUpdate ( long [ ] indexes , double value ) { long [ ] physicalIndexes = isView ( ) ? translateToPhysical ( indexes ) : indexes ; for ( int i = 0 ; i < length ; i ++ ) { long [ ] idx = getUnderlyingIndicesOf ( i ) . asLong ( ) ; if ( Arrays . equals ( idx , physicalIndexes ) ) { if ( value == 0 ) { remo...
Add a new element in the ndarray or update the value if there is already a non - null element at this position