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astropy/astropy-helpers | astropy_helpers/utils.py | extends_doc | def extends_doc(extended_func):
"""
A function decorator for use when wrapping an existing function but adding
additional functionality. This copies the docstring from the original
function, and appends to it (along with a newline) the docstring of the
wrapper function.
Examples
--------
... | python | def extends_doc(extended_func):
"""
A function decorator for use when wrapping an existing function but adding
additional functionality. This copies the docstring from the original
function, and appends to it (along with a newline) the docstring of the
wrapper function.
Examples
--------
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astropy/astropy-helpers | astropy_helpers/utils.py | find_data_files | def find_data_files(package, pattern):
"""
Include files matching ``pattern`` inside ``package``.
Parameters
----------
package : str
The package inside which to look for data files
pattern : str
Pattern (glob-style) to match for the data files (e.g. ``*.dat``).
This sup... | python | def find_data_files(package, pattern):
"""
Include files matching ``pattern`` inside ``package``.
Parameters
----------
package : str
The package inside which to look for data files
pattern : str
Pattern (glob-style) to match for the data files (e.g. ``*.dat``).
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astropy/astropy-helpers | astropy_helpers/version_helpers.py | _version_split | def _version_split(version):
"""
Split a version string into major, minor, and bugfix numbers. If any of
those numbers are missing the default is zero. Any pre/post release
modifiers are ignored.
Examples
========
>>> _version_split('1.2.3')
(1, 2, 3)
>>> _version_split('1.2')
... | python | def _version_split(version):
"""
Split a version string into major, minor, and bugfix numbers. If any of
those numbers are missing the default is zero. Any pre/post release
modifiers are ignored.
Examples
========
>>> _version_split('1.2.3')
(1, 2, 3)
>>> _version_split('1.2')
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astropy/astropy-helpers | astropy_helpers/version_helpers.py | _generate_git_header | def _generate_git_header(packagename, version, githash):
"""
Generates a header to the version.py module that includes utilities for
probing the git repository for updates (to the current git hash, etc.)
These utilities should only be available in development versions, and not
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... | python | def _generate_git_header(packagename, version, githash):
"""
Generates a header to the version.py module that includes utilities for
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These utilities should only be available in development versions, and not
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astropy/astropy-helpers | astropy_helpers/version_helpers.py | generate_version_py | def generate_version_py(packagename=None, version=None, release=None, debug=None,
uses_git=None, srcdir='.'):
"""
Generate a version.py file in the package with version information, and
update developer version strings.
This function should normally be called without any argumen... | python | def generate_version_py(packagename=None, version=None, release=None, debug=None,
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astropy/astropy-helpers | astropy_helpers/version_helpers.py | get_pkg_version_module | def get_pkg_version_module(packagename, fromlist=None):
"""Returns the package's .version module generated by
`astropy_helpers.version_helpers.generate_version_py`. Raises an
ImportError if the version module is not found.
If ``fromlist`` is an iterable, return a tuple of the members of the
versio... | python | def get_pkg_version_module(packagename, fromlist=None):
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astropy/astropy-helpers | astropy_helpers/setup_helpers.py | setup | def setup(**kwargs):
"""
A wrapper around setuptools' setup() function that automatically sets up
custom commands, generates a version file, and customizes the setup process
via the ``setup_package.py`` files.
"""
# DEPRECATED: store the package name in a built-in variable so it's easy
# to... | python | def setup(**kwargs):
"""
A wrapper around setuptools' setup() function that automatically sets up
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"""
# DEPRECATED: store the package name in a built-in variable so it's easy
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astropy/astropy-helpers | astropy_helpers/setup_helpers.py | get_debug_option | def get_debug_option(packagename):
""" Determines if the build is in debug mode.
Returns
-------
debug : bool
True if the current build was started with the debug option, False
otherwise.
"""
try:
current_debug = get_pkg_version_module(packagename,
... | python | def get_debug_option(packagename):
""" Determines if the build is in debug mode.
Returns
-------
debug : bool
True if the current build was started with the debug option, False
otherwise.
"""
try:
current_debug = get_pkg_version_module(packagename,
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astropy/astropy-helpers | astropy_helpers/setup_helpers.py | register_commands | def register_commands(package=None, version=None, release=None, srcdir='.'):
"""
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can then be passed to the ``cmdclass`` argument in ``setup()``.
"""
if package is not None:
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astropy/astropy-helpers | astropy_helpers/setup_helpers.py | add_command_hooks | def add_command_hooks(commands, srcdir='.'):
"""
Look through setup_package.py modules for functions with names like
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``<command_name>`` is the name of a ``setup.py`` command (e.g. build_ext).
If either hook is present this adds a wr... | python | def add_command_hooks(commands, srcdir='.'):
"""
Look through setup_package.py modules for functions with names like
``pre_<command_name>_hook`` and ``post_<command_name>_hook`` where
``<command_name>`` is the name of a ``setup.py`` command (e.g. build_ext).
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astropy/astropy-helpers | astropy_helpers/setup_helpers.py | generate_hooked_command | def generate_hooked_command(cmd_name, cmd_cls, hooks):
"""
Returns a generated subclass of ``cmd_cls`` that runs the pre- and
post-command hooks for that command before and after the ``cmd_cls.run``
method.
"""
def run(self, orig_run=cmd_cls.run):
self.run_command_hooks('pre_hooks')
... | python | def generate_hooked_command(cmd_name, cmd_cls, hooks):
"""
Returns a generated subclass of ``cmd_cls`` that runs the pre- and
post-command hooks for that command before and after the ``cmd_cls.run``
method.
"""
def run(self, orig_run=cmd_cls.run):
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astropy/astropy-helpers | astropy_helpers/setup_helpers.py | run_command_hooks | def run_command_hooks(cmd_obj, hook_kind):
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"""
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*cmd_obj* is a finalized command object; *hook_kind* is either
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astropy/astropy-helpers | astropy_helpers/setup_helpers.py | update_package_files | def update_package_files(srcdir, extensions, package_data, packagenames,
package_dirs):
"""
This function is deprecated and maintained for backward compatibility
with affiliated packages. Affiliated packages should update their
setup.py to use `get_package_info` instead.
""... | python | def update_package_files(srcdir, extensions, package_data, packagenames,
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"""
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astropy/astropy-helpers | astropy_helpers/setup_helpers.py | get_package_info | def get_package_info(srcdir='.', exclude=()):
"""
Collates all of the information for building all subpackages
and returns a dictionary of keyword arguments that can
be passed directly to `distutils.setup`.
The purpose of this function is to allow subpackages to update the
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"""
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astropy/astropy-helpers | astropy_helpers/setup_helpers.py | get_cython_extensions | def get_cython_extensions(srcdir, packages, prevextensions=tuple(),
extincludedirs=None):
"""
Looks for Cython files and generates Extensions if needed.
Parameters
----------
srcdir : str
Path to the root of the source directory to search.
prevextensions : list... | python | def get_cython_extensions(srcdir, packages, prevextensions=tuple(),
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Looks for Cython files and generates Extensions if needed.
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srcdir : str
Path to the root of the source directory to search.
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astropy/astropy-helpers | astropy_helpers/setup_helpers.py | pkg_config | def pkg_config(packages, default_libraries, executable='pkg-config'):
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If the pkg-config lookup fails, default_libraries is applied to
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... | python | def pkg_config(packages, default_libraries, executable='pkg-config'):
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astropy/astropy-helpers | astropy_helpers/setup_helpers.py | add_external_library | def add_external_library(library):
"""
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----------
library : str
The name of the library. If the library is `foo`, the build
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Add a build option for selecting the internal or system copy of a library.
Parameters
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library : str
The name of the library. If the library is `foo`, the build
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astropy/astropy-helpers | astropy_helpers/setup_helpers.py | find_packages | def find_packages(where='.', exclude=(), invalidate_cache=False):
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astropy/astropy-helpers | astropy_helpers/commands/build_ext.py | should_build_with_cython | def should_build_with_cython(previous_cython_version, is_release):
"""
Returns the previously used Cython version (or 'unknown' if not
previously built) if Cython should be used to build extension modules from
pyx files.
"""
# Only build with Cython if, of course, Cython is installed, we're in ... | python | def should_build_with_cython(previous_cython_version, is_release):
"""
Returns the previously used Cython version (or 'unknown' if not
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astropy/astropy-helpers | astropy_helpers/commands/build_ext.py | AstropyHelpersBuildExt._check_cython_sources | def _check_cython_sources(self, extension):
"""
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"""
# Determine the compiler we'll be using
if self.compiler is None:
compiler = get_d... | python | def _check_cython_sources(self, extension):
"""
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astropy/astropy-helpers | astropy_helpers/openmp_helpers.py | _get_flag_value_from_var | def _get_flag_value_from_var(flag, var, delim=' '):
"""
Extract flags from an environment variable.
Parameters
----------
flag : str
The flag to extract, for example '-I' or '-L'
var : str
The environment variable to extract the flag from, e.g. CFLAGS or LDFLAGS.
delim : str... | python | def _get_flag_value_from_var(flag, var, delim=' '):
"""
Extract flags from an environment variable.
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flag : str
The flag to extract, for example '-I' or '-L'
var : str
The environment variable to extract the flag from, e.g. CFLAGS or LDFLAGS.
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astropy/astropy-helpers | astropy_helpers/openmp_helpers.py | get_openmp_flags | def get_openmp_flags():
"""
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Returns
-------
result : `{'compiler_flags':<flags>, 'linker_flags':<flags>}`
Notes
-----
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"""
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astropy/astropy-helpers | astropy_helpers/openmp_helpers.py | check_openmp_support | def check_openmp_support(openmp_flags=None):
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openmp_flags : dict, optional
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"""
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astropy/astropy-helpers | astropy_helpers/openmp_helpers.py | is_openmp_supported | def is_openmp_supported():
"""
Determine whether the build compiler has OpenMP support.
"""
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ret = check_openmp_support()
log.set_threshold(log_threshold)
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"""
Determine whether the build compiler has OpenMP support.
"""
log_threshold = log.set_threshold(log.FATAL)
ret = check_openmp_support()
log.set_threshold(log_threshold)
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astropy/astropy-helpers | astropy_helpers/openmp_helpers.py | add_openmp_flags_if_available | def add_openmp_flags_if_available(extension):
"""
Add OpenMP compilation flags, if supported (if not a warning will be
printed to the console and no flags will be added.)
Returns `True` if the flags were added, `False` otherwise.
"""
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"""
Add OpenMP compilation flags, if supported (if not a warning will be
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Returns `True` if the flags were added, `False` otherwise.
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astropy/astropy-helpers | astropy_helpers/openmp_helpers.py | generate_openmp_enabled_py | def generate_openmp_enabled_py(packagename, srcdir='.', disable_openmp=None):
"""
Generate ``package.openmp_enabled.is_openmp_enabled``, which can then be used
to determine, post build, whether the package was built with or without
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"""
if packagename.lower() == 'astropy':
... | python | def generate_openmp_enabled_py(packagename, srcdir='.', disable_openmp=None):
"""
Generate ``package.openmp_enabled.is_openmp_enabled``, which can then be used
to determine, post build, whether the package was built with or without
OpenMP support.
"""
if packagename.lower() == 'astropy':
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PmagPy/PmagPy | dialogs/magic_grid3.py | HugeTable.GetValue | def GetValue(self, row, col):
"""
Find the matching value from pandas DataFrame,
return it.
"""
if len(self.dataframe):
return str(self.dataframe.iloc[row, col])
return '' | python | def GetValue(self, row, col):
"""
Find the matching value from pandas DataFrame,
return it.
"""
if len(self.dataframe):
return str(self.dataframe.iloc[row, col])
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PmagPy/PmagPy | dialogs/magic_grid3.py | HugeTable.SetValue | def SetValue(self, row, col, value):
"""
Set value in the pandas DataFrame
"""
self.dataframe.iloc[row, col] = value | python | def SetValue(self, row, col, value):
"""
Set value in the pandas DataFrame
"""
self.dataframe.iloc[row, col] = value | [
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PmagPy/PmagPy | dialogs/magic_grid3.py | HugeTable.SetColumnValues | def SetColumnValues(self, col, value):
"""
Custom method to efficiently set all values
in a column.
Parameters
----------
col : str or int
name or index position of column
value : list-like
values to assign to all cells in the column
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"""
Custom method to efficiently set all values
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Parameters
----------
col : str or int
name or index position of column
value : list-like
values to assign to all cells in the column
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PmagPy/PmagPy | dialogs/magic_grid3.py | HugeTable.GetColLabelValue | def GetColLabelValue(self, col):
"""
Get col label from dataframe
"""
if len(self.dataframe):
return self.dataframe.columns[col]
return '' | python | def GetColLabelValue(self, col):
"""
Get col label from dataframe
"""
if len(self.dataframe):
return self.dataframe.columns[col]
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PmagPy/PmagPy | dialogs/magic_grid3.py | HugeTable.SetColLabelValue | def SetColLabelValue(self, col, value):
"""
Set col label value in dataframe
"""
if len(self.dataframe):
col_name = str(self.dataframe.columns[col])
self.dataframe.rename(columns={col_name: str(value)}, inplace=True)
return None | python | def SetColLabelValue(self, col, value):
"""
Set col label value in dataframe
"""
if len(self.dataframe):
col_name = str(self.dataframe.columns[col])
self.dataframe.rename(columns={col_name: str(value)}, inplace=True)
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PmagPy/PmagPy | dialogs/magic_grid3.py | BaseMagicGrid.set_scrollbars | def set_scrollbars(self):
"""
Set to always have vertical scrollbar.
Have horizontal scrollbar unless grid has very few rows.
Older versions of wxPython will choke on this,
in which case nothing happens.
"""
try:
if len(self.row_labels) < 5:
... | python | def set_scrollbars(self):
"""
Set to always have vertical scrollbar.
Have horizontal scrollbar unless grid has very few rows.
Older versions of wxPython will choke on this,
in which case nothing happens.
"""
try:
if len(self.row_labels) < 5:
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PmagPy/PmagPy | dialogs/magic_grid3.py | BaseMagicGrid.add_items | def add_items(self, dataframe, hide_cols=()):
"""
Add items and/or update existing items in grid
"""
# replace "None" values with ""
dataframe = dataframe.fillna("")
# remove any columns that shouldn't be shown
for col in hide_cols:
if col in dataframe... | python | def add_items(self, dataframe, hide_cols=()):
"""
Add items and/or update existing items in grid
"""
# replace "None" values with ""
dataframe = dataframe.fillna("")
# remove any columns that shouldn't be shown
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PmagPy/PmagPy | dialogs/magic_grid3.py | BaseMagicGrid.save_items | def save_items(self, rows=None, verbose=False):
"""
Return a dictionary of row data for selected rows:
{1: {col1: val1, col2: val2}, ...}
If a list of row numbers isn't provided, get data for all.
"""
if rows:
rows = rows
else:
rows = list(... | python | def save_items(self, rows=None, verbose=False):
"""
Return a dictionary of row data for selected rows:
{1: {col1: val1, col2: val2}, ...}
If a list of row numbers isn't provided, get data for all.
"""
if rows:
rows = rows
else:
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PmagPy/PmagPy | dialogs/magic_grid3.py | BaseMagicGrid.on_edit_grid | def on_edit_grid(self, event):
"""sets self.changes to true when user edits the grid.
provides down and up key functionality for exiting the editor"""
if not self.changes:
self.changes = {event.Row}
else:
self.changes.add(event.Row)
#self.changes = True
... | python | def on_edit_grid(self, event):
"""sets self.changes to true when user edits the grid.
provides down and up key functionality for exiting the editor"""
if not self.changes:
self.changes = {event.Row}
else:
self.changes.add(event.Row)
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PmagPy/PmagPy | dialogs/magic_grid3.py | BaseMagicGrid.do_paste | def do_paste(self, event):
"""
Read clipboard into dataframe
Paste data into grid, adding extra rows if needed
and ignoring extra columns.
"""
# find where the user has clicked
col_ind = self.GetGridCursorCol()
row_ind = self.GetGridCursorRow()
# r... | python | def do_paste(self, event):
"""
Read clipboard into dataframe
Paste data into grid, adding extra rows if needed
and ignoring extra columns.
"""
# find where the user has clicked
col_ind = self.GetGridCursorCol()
row_ind = self.GetGridCursorRow()
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PmagPy/PmagPy | dialogs/magic_grid3.py | BaseMagicGrid.update_changes_after_row_delete | def update_changes_after_row_delete(self, row_num):
"""
Update self.changes so that row numbers for edited rows are still correct.
I.e., if row 4 was edited and then row 2 was deleted, row 4 becomes row 3.
This function updates self.changes to reflect that.
"""
if row_num... | python | def update_changes_after_row_delete(self, row_num):
"""
Update self.changes so that row numbers for edited rows are still correct.
I.e., if row 4 was edited and then row 2 was deleted, row 4 becomes row 3.
This function updates self.changes to reflect that.
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PmagPy/PmagPy | dialogs/magic_grid3.py | BaseMagicGrid.paint_invalid_cell | def paint_invalid_cell(self, row, col, color='MEDIUM VIOLET RED',
skip_cell=False):
"""
Take row, column, and turn it color
"""
self.SetColLabelRenderer(col, MyColLabelRenderer('#1101e0'))
# SetCellRenderer doesn't work with table-based grid (HugeGrid c... | python | def paint_invalid_cell(self, row, col, color='MEDIUM VIOLET RED',
skip_cell=False):
"""
Take row, column, and turn it color
"""
self.SetColLabelRenderer(col, MyColLabelRenderer('#1101e0'))
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PmagPy/PmagPy | dialogs/magic_grid3.py | HugeMagicGrid.add_col | def add_col(self, label):
"""
Update table dataframe, and append a new column
Parameters
----------
label : str
Returns
---------
last_col: int
index column number of added col
"""
self.table.dataframe[label] = ''
self... | python | def add_col(self, label):
"""
Update table dataframe, and append a new column
Parameters
----------
label : str
Returns
---------
last_col: int
index column number of added col
"""
self.table.dataframe[label] = ''
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PmagPy/PmagPy | dialogs/magic_grid3.py | HugeMagicGrid.remove_col | def remove_col(self, col_num):
"""
update table dataframe, and remove a column.
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"""
label_value = self.GetColLabelValue(col_num).strip('**').strip('^^')
self.col_labels.remove(label_value)
del self.table.dataframe[label_value]
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"""
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resize grid to display correctly
"""
label_value = self.GetColLabelValue(col_num).strip('**').strip('^^')
self.col_labels.remove(label_value)
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PmagPy/PmagPy | programs/plotdi_a.py | main | def main():
"""
NAME
plotdi_a.py
DESCRIPTION
plots equal area projection from dec inc data and fisher mean, cone of confidence
INPUT FORMAT
takes dec, inc, alpha95 as first three columns in space delimited file
SYNTAX
plotdi_a.py [-i][-f FILE]
OPTIONS
-f ... | python | def main():
"""
NAME
plotdi_a.py
DESCRIPTION
plots equal area projection from dec inc data and fisher mean, cone of confidence
INPUT FORMAT
takes dec, inc, alpha95 as first three columns in space delimited file
SYNTAX
plotdi_a.py [-i][-f FILE]
OPTIONS
-f ... | [
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PmagPy/PmagPy | programs/di_rot.py | main | def main():
"""
NAME
di_rot.py
DESCRIPTION
rotates set of directions to new coordinate system
SYNTAX
di_rot.py [command line options]
OPTIONS
-h prints help message and quits
-f specify input file, default is standard input
-F specify output file, d... | python | def main():
"""
NAME
di_rot.py
DESCRIPTION
rotates set of directions to new coordinate system
SYNTAX
di_rot.py [command line options]
OPTIONS
-h prints help message and quits
-f specify input file, default is standard input
-F specify output file, d... | [
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di_rot.py
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rotates set of directions to new coordinate system
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PmagPy/PmagPy | programs/conversion_scripts2/_2g_bin_magic2.py | main | def main(command_line=True, **kwargs):
"""
NAME
_2g_bin_magic.py
DESCRIPTION
takes the binary 2g format magnetometer files and converts them to magic_measurements, er_samples.txt and er_sites.txt file
SYNTAX
2g_bin_magic.py [command line options]
OPTIONS
-f FILE: s... | python | def main(command_line=True, **kwargs):
"""
NAME
_2g_bin_magic.py
DESCRIPTION
takes the binary 2g format magnetometer files and converts them to magic_measurements, er_samples.txt and er_sites.txt file
SYNTAX
2g_bin_magic.py [command line options]
OPTIONS
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2g_bin_magic.py [command line options]
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PmagPy/PmagPy | programs/unsquish.py | main | def main():
"""
NAME
unsquish.py
DESCRIPTION
takes dec/inc data and "unsquishes" with specified flattening factor, flt
using formula tan(If)=(1/flt)*tan(Io)
INPUT
declination inclination
OUTPUT
"unsquished" declincation inclination
SYNTA... | python | def main():
"""
NAME
unsquish.py
DESCRIPTION
takes dec/inc data and "unsquishes" with specified flattening factor, flt
using formula tan(If)=(1/flt)*tan(Io)
INPUT
declination inclination
OUTPUT
"unsquished" declincation inclination
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unsquish.py
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takes dec/inc data and "unsquishes" with specified flattening factor, flt
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PmagPy/PmagPy | programs/conversion_scripts2/iodp_jr6_magic2.py | main | def main(command_line=True, **kwargs):
"""
NAME
iodp_jr6_magic.py
DESCRIPTION
converts shipboard .jr6 format files to magic_measurements format files
SYNTAX
iodp_jr6_magic.py [command line options]
OPTIONS
-h: prints the help message and quits.
-f FILE: spe... | python | def main(command_line=True, **kwargs):
"""
NAME
iodp_jr6_magic.py
DESCRIPTION
converts shipboard .jr6 format files to magic_measurements format files
SYNTAX
iodp_jr6_magic.py [command line options]
OPTIONS
-h: prints the help message and quits.
-f FILE: spe... | [
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PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_n_ptrm | def get_n_ptrm(tmin, tmax, ptrm_temps, ptrm_starting_temps):
"""
input: tmin, tmax, ptrm_temps, ptrm_starting_temps
returns number of ptrm_checks included in best fit segment.
excludes checks if temp exceeds tmax OR if starting temp exceeds tmax.
output: n_ptrm, ptrm_checks_included_temperatures
... | python | def get_n_ptrm(tmin, tmax, ptrm_temps, ptrm_starting_temps):
"""
input: tmin, tmax, ptrm_temps, ptrm_starting_temps
returns number of ptrm_checks included in best fit segment.
excludes checks if temp exceeds tmax OR if starting temp exceeds tmax.
output: n_ptrm, ptrm_checks_included_temperatures
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PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_max_ptrm_check | def get_max_ptrm_check(ptrm_checks_included_temps, ptrm_checks_all_temps, ptrm_x, t_Arai, x_Arai):
"""
input: ptrm_checks_included_temps, ptrm_checks_all_temps, ptrm_x, t_Arai, x_Arai.
sorts through included ptrm_checks and finds the largest ptrm check diff,
the sum of the total diffs,
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"""
input: ptrm_checks_included_temps, ptrm_checks_all_temps, ptrm_x, t_Arai, x_Arai.
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PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_DRAT | def get_DRAT(delta_x_prime, delta_y_prime, max_ptrm_check):
"""
Input: TRM length of best fit line (delta_x_prime),
NRM length of best fit line,
max_ptrm_check
Output: DRAT (maximum difference produced by a ptrm check normed by best fit line),
length best fit line
"""
L = num... | python | def get_DRAT(delta_x_prime, delta_y_prime, max_ptrm_check):
"""
Input: TRM length of best fit line (delta_x_prime),
NRM length of best fit line,
max_ptrm_check
Output: DRAT (maximum difference produced by a ptrm check normed by best fit line),
length best fit line
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PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_CDRAT | def get_CDRAT(L, sum_ptrm_checks, sum_abs_ptrm_checks):
"""
input: best_fit line length, sum of ptrm check diffs,
sum of absolute value of ptrm check diffs
output: CDRAT (uses sum of diffs), CDRAT_prime (uses sum of absolute diffs)
"""
CDRAT = (old_div(sum_ptrm_checks, L)) * 100.
CDRAT_p... | python | def get_CDRAT(L, sum_ptrm_checks, sum_abs_ptrm_checks):
"""
input: best_fit line length, sum of ptrm check diffs,
sum of absolute value of ptrm check diffs
output: CDRAT (uses sum of diffs), CDRAT_prime (uses sum of absolute diffs)
"""
CDRAT = (old_div(sum_ptrm_checks, L)) * 100.
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PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_DRATS | def get_DRATS(sum_ptrm_checks, sum_abs_ptrm_checks, x_Arai, end):
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output: DRATS (uses sum of diffs), DRATS_prime (uses sum of absolute diffs)
"""
DRATS = (old_div(sum_ptrm_checks, x_Arai... | python | def get_DRATS(sum_ptrm_checks, sum_abs_ptrm_checks, x_Arai, end):
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PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_mean_DRAT | def get_mean_DRAT(sum_ptrm_checks, sum_abs_ptrm_checks, n_pTRM, L):
"""
input: sum_ptrm_checks, sum_abs_ptrm_checks, n_pTRM, L
output: mean DRAT (the average difference produced by a pTRM check,
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"""
if not n_pTRM:
return float('nan'), float(... | python | def get_mean_DRAT(sum_ptrm_checks, sum_abs_ptrm_checks, n_pTRM, L):
"""
input: sum_ptrm_checks, sum_abs_ptrm_checks, n_pTRM, L
output: mean DRAT (the average difference produced by a pTRM check,
normalized by the length of the best-fit line)
"""
if not n_pTRM:
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PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_mean_DEV | def get_mean_DEV(sum_ptrm_checks, sum_abs_ptrm_checks, n_pTRM, delta_x_prime):
"""
input: sum_ptrm_checks, sum_abs_ptrm_checks, n_pTRM, delta_x_prime
output: Mean deviation of a pTRM check
"""
if not n_pTRM:
return float('nan'), float('nan')
mean_DEV = ((old_div(1., n_pTRM)) * (old_div(s... | python | def get_mean_DEV(sum_ptrm_checks, sum_abs_ptrm_checks, n_pTRM, delta_x_prime):
"""
input: sum_ptrm_checks, sum_abs_ptrm_checks, n_pTRM, delta_x_prime
output: Mean deviation of a pTRM check
"""
if not n_pTRM:
return float('nan'), float('nan')
mean_DEV = ((old_div(1., n_pTRM)) * (old_div(s... | [
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PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_delta_pal_vectors | def get_delta_pal_vectors(PTRMS, PTRM_Checks, NRM):
""" takes in PTRM data in this format: [temp, dec, inc, moment, ZI or IZ] -- and PTRM_check data in this format: [temp, dec, inc, moment]. Returns them in vector form (cartesian). """
PTRMS = numpy.array(PTRMS)
PTRM_Checks = numpy.array(PTRM_Checks)
T... | python | def get_delta_pal_vectors(PTRMS, PTRM_Checks, NRM):
""" takes in PTRM data in this format: [temp, dec, inc, moment, ZI or IZ] -- and PTRM_check data in this format: [temp, dec, inc, moment]. Returns them in vector form (cartesian). """
PTRMS = numpy.array(PTRMS)
PTRM_Checks = numpy.array(PTRM_Checks)
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PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_diffs | def get_diffs(ptrms_vectors, ptrm_checks_vectors, ptrms_orig, checks_orig):
"""
input: ptrms_vectors, ptrm_checks_vectors, ptrms_orig, checks_orig
output: vector diffs between original and ptrm check, C
"""
ptrm_temps = numpy.array(ptrms_orig)[:,0]
check_temps = numpy.array(checks_orig)[:,0]
... | python | def get_diffs(ptrms_vectors, ptrm_checks_vectors, ptrms_orig, checks_orig):
"""
input: ptrms_vectors, ptrm_checks_vectors, ptrms_orig, checks_orig
output: vector diffs between original and ptrm check, C
"""
ptrm_temps = numpy.array(ptrms_orig)[:,0]
check_temps = numpy.array(checks_orig)[:,0]
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PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_TRM_star | def get_TRM_star(C, ptrms_vectors, start, end):
"""
input: C, ptrms_vectors, start, end
output: TRM_star, x_star (for delta_pal statistic)
"""
TRM_star = numpy.zeros([len(ptrms_vectors), 3])
TRM_star[0] = [0., 0., 0.]
x_star = numpy.zeros(len(ptrms_vectors))
for num, vec in enumerate(ptr... | python | def get_TRM_star(C, ptrms_vectors, start, end):
"""
input: C, ptrms_vectors, start, end
output: TRM_star, x_star (for delta_pal statistic)
"""
TRM_star = numpy.zeros([len(ptrms_vectors), 3])
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PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_b_star | def get_b_star(x_star, y_err, y_mean, y_segment):
"""
input: x_star, y_err, y_mean, y_segment
output: b_star (corrected slope for delta_pal statistic)
"""
#print "x_star, should be same as Xcorr / NRM"
#print x_star
x_star_mean = numpy.mean(x_star)
x_err = x_star - x_star_mean
b_star... | python | def get_b_star(x_star, y_err, y_mean, y_segment):
"""
input: x_star, y_err, y_mean, y_segment
output: b_star (corrected slope for delta_pal statistic)
"""
#print "x_star, should be same as Xcorr / NRM"
#print x_star
x_star_mean = numpy.mean(x_star)
x_err = x_star - x_star_mean
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PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_delta_pal | def get_delta_pal(b, b_star):
"""
input: b, b_star (actual and corrected slope)
output: delta_pal
"""
delta_pal = numpy.abs(old_div((b - b_star), b)) * 100
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"""
input: b, b_star (actual and corrected slope)
output: delta_pal
"""
delta_pal = numpy.abs(old_div((b - b_star), b)) * 100
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PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_full_delta_pal | def get_full_delta_pal(PTRMS, PTRM_Checks, NRM, y_err, y_mean, b, start, end, y_segment):
"""
input: PTRMS, PTRM_Checks, NRM, y_err, y_mean, b, start, end, y_segment
runs full sequence necessary to get delta_pal
"""
#print "-------"
#print "calling get_full_delta_pal in lib"
# return 0
PT... | python | def get_full_delta_pal(PTRMS, PTRM_Checks, NRM, y_err, y_mean, b, start, end, y_segment):
"""
input: PTRMS, PTRM_Checks, NRM, y_err, y_mean, b, start, end, y_segment
runs full sequence necessary to get delta_pal
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#print "-------"
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PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_segments | def get_segments(ptrms, ptrm_checks, tmax):
"""
input: ptrms, ptrm_checks, tmax
grabs ptrms that are done below tmax
grabs ptrm checks that are done below tmax AND whose starting temp is below tmax
output: ptrms_included, checks_included
"""
ptrms_included = []
checks_included = []
p... | python | def get_segments(ptrms, ptrm_checks, tmax):
"""
input: ptrms, ptrm_checks, tmax
grabs ptrms that are done below tmax
grabs ptrm checks that are done below tmax AND whose starting temp is below tmax
output: ptrms_included, checks_included
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ptrms_included = []
checks_included = []
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PmagPy/PmagPy | pmagpy/Fit.py | Fit.select | def select(self):
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(Note: may be moved into GUI soon)
"""
if self.GUI==None: return
self.GUI.current_fit = self
if self.tmax != None and self.tmin != None:
self.GUI.update_bounds_boxes()... | python | def select(self):
"""
Makes this fit the selected fit on the GUI that is it's parent
(Note: may be moved into GUI soon)
"""
if self.GUI==None: return
self.GUI.current_fit = self
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PmagPy/PmagPy | pmagpy/Fit.py | Fit.get | def get(self,coordinate_system):
"""
Return the pmagpy paramters dictionary associated with this fit and the given
coordinate system
@param: coordinate_system -> the coordinate system who's parameters to return
"""
if coordinate_system == 'DA-DIR' or coordinate_system == ... | python | def get(self,coordinate_system):
"""
Return the pmagpy paramters dictionary associated with this fit and the given
coordinate system
@param: coordinate_system -> the coordinate system who's parameters to return
"""
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parameters such that it matches the new data.
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"""
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PmagPy/PmagPy | pmagpy/Fit.py | Fit.has_values | def has_values(self, name, tmin, tmax):
"""
A basic fit equality checker compares name and bounds of 2 fits
@param: name -> name of the other fit
@param: tmin -> lower bound of the other fit
@param: tmax -> upper bound of the other fit
@return: boolean comaparing 2 fits
... | python | def has_values(self, name, tmin, tmax):
"""
A basic fit equality checker compares name and bounds of 2 fits
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@param: tmin -> lower bound of the other fit
@param: tmax -> upper bound of the other fit
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PmagPy/PmagPy | SPD/lib/lib_tail_check_statistics.py | get_n_tail | def get_n_tail(tmax, tail_temps):
"""determines number of included tail checks in best fit segment"""
#print "tail_temps: {0}, tmax: {0}".format(tail_temps, tmax)
t_index = 0
adj_tmax = 0
if tmax < tail_temps[0]:
return 0
try:
t_index = list(tail_temps).index(tmax)
except: # ... | python | def get_n_tail(tmax, tail_temps):
"""determines number of included tail checks in best fit segment"""
#print "tail_temps: {0}, tmax: {0}".format(tail_temps, tmax)
t_index = 0
adj_tmax = 0
if tmax < tail_temps[0]:
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try:
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PmagPy/PmagPy | SPD/lib/lib_tail_check_statistics.py | get_max_tail_check | def get_max_tail_check(y_Arai, y_tail, t_Arai, tail_temps, n_tail):
"""
input: y_Arai, y_tail, t_Arai, tail_temps, n_tail
output: max_check, diffs
"""
if not n_tail:
return float('nan'), []
tail_compare = []
y_Arai_compare = []
for temp in tail_temps[:n_tail]:
tail_index ... | python | def get_max_tail_check(y_Arai, y_tail, t_Arai, tail_temps, n_tail):
"""
input: y_Arai, y_tail, t_Arai, tail_temps, n_tail
output: max_check, diffs
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if not n_tail:
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PmagPy/PmagPy | SPD/lib/lib_tail_check_statistics.py | get_DRAT_tail | def get_DRAT_tail(max_check, L):
"""
input: tail_check_max, best fit line length
output: DRAT_tail
"""
if max_check == 0:
return float('nan')
DRAT_tail = (old_div(max_check, L)) * 100.
return DRAT_tail | python | def get_DRAT_tail(max_check, L):
"""
input: tail_check_max, best fit line length
output: DRAT_tail
"""
if max_check == 0:
return float('nan')
DRAT_tail = (old_div(max_check, L)) * 100.
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PmagPy/PmagPy | SPD/lib/lib_tail_check_statistics.py | get_delta_TR | def get_delta_TR(tail_check_max, y_int):
"""
input: tail_check_max, y_intercept
output: delta_TR
"""
if tail_check_max == 0 or numpy.isnan(tail_check_max):
return float('nan')
delta_TR = (old_div(tail_check_max, abs(y_int))) * 100.
return delta_TR | python | def get_delta_TR(tail_check_max, y_int):
"""
input: tail_check_max, y_intercept
output: delta_TR
"""
if tail_check_max == 0 or numpy.isnan(tail_check_max):
return float('nan')
delta_TR = (old_div(tail_check_max, abs(y_int))) * 100.
return delta_TR | [
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PmagPy/PmagPy | SPD/lib/lib_tail_check_statistics.py | get_MD_VDS | def get_MD_VDS(tail_check_max, vds):
"""
input: tail_check_max, vector difference sum
output: MD_VDS
"""
if tail_check_max == 0 or numpy.isnan(tail_check_max):
return float('nan')
MD_VDS = (old_div(tail_check_max, vds)) * 100
return MD_VDS | python | def get_MD_VDS(tail_check_max, vds):
"""
input: tail_check_max, vector difference sum
output: MD_VDS
"""
if tail_check_max == 0 or numpy.isnan(tail_check_max):
return float('nan')
MD_VDS = (old_div(tail_check_max, vds)) * 100
return MD_VDS | [
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PmagPy/PmagPy | programs/dir_redo.py | main | def main():
"""
NAME
dir_redo.py
DESCRIPTION
converts the Cogne DIR format to PmagPy redo file
SYNTAX
dir_redo.py [-h] [command line options]
OPTIONS
-h: prints help message and quits
-f FILE: specify input file
-F FILE: specify output file, defaul... | python | def main():
"""
NAME
dir_redo.py
DESCRIPTION
converts the Cogne DIR format to PmagPy redo file
SYNTAX
dir_redo.py [-h] [command line options]
OPTIONS
-h: prints help message and quits
-f FILE: specify input file
-F FILE: specify output file, defaul... | [
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dir_redo.py
DESCRIPTION
converts the Cogne DIR format to PmagPy redo file
SYNTAX
dir_redo.py [-h] [command line options]
OPTIONS
-h: prints help message and quits
-f FILE: specify input file
-F FILE: specify output file, default is 'zeq_redo' | [
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PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.set_dm | def set_dm(self, num):
"""
Make GUI changes based on data model num.
Get info from WD in appropriate format.
"""
#enable or disable self.btn1a
if self.data_model_num == 3:
self.btn1a.Enable()
else:
self.btn1a.Disable()
#
# s... | python | def set_dm(self, num):
"""
Make GUI changes based on data model num.
Get info from WD in appropriate format.
"""
#enable or disable self.btn1a
if self.data_model_num == 3:
self.btn1a.Enable()
else:
self.btn1a.Disable()
#
# s... | [
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PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.get_wd_data | def get_wd_data(self):
"""
Show dialog to get user input for which directory
to set as working directory.
Called by self.get_dm_and_wd
"""
wait = wx.BusyInfo('Reading in data from current working directory, please wait...')
#wx.Yield()
print('-I- Read in a... | python | def get_wd_data(self):
"""
Show dialog to get user input for which directory
to set as working directory.
Called by self.get_dm_and_wd
"""
wait = wx.BusyInfo('Reading in data from current working directory, please wait...')
#wx.Yield()
print('-I- Read in a... | [
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PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.get_wd_data2 | def get_wd_data2(self):
"""
Get 2.5 data from self.WD and put it into
ErMagicBuilder object.
Called by get_dm_and_wd
"""
wait = wx.BusyInfo('Reading in data from current working directory, please wait...')
#wx.Yield()
print('-I- Read in any available data ... | python | def get_wd_data2(self):
"""
Get 2.5 data from self.WD and put it into
ErMagicBuilder object.
Called by get_dm_and_wd
"""
wait = wx.BusyInfo('Reading in data from current working directory, please wait...')
#wx.Yield()
print('-I- Read in any available data ... | [
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PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.InitUI | def InitUI(self):
"""
Build the mainframe
"""
menubar = pmag_gui_menu.MagICMenu(self, data_model_num=self.data_model_num)
self.SetMenuBar(menubar)
#pnl = self.panel
#---sizer logo ----
#start_image = wx.Image("/Users/ronshaar/PmagPy/images/logo2.png")
... | python | def InitUI(self):
"""
Build the mainframe
"""
menubar = pmag_gui_menu.MagICMenu(self, data_model_num=self.data_model_num)
self.SetMenuBar(menubar)
#pnl = self.panel
#---sizer logo ----
#start_image = wx.Image("/Users/ronshaar/PmagPy/images/logo2.png")
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PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.get_dir | def get_dir(self):
"""
Choose a working directory dialog.
Called by self.get_dm_and_wd.
"""
if "-WD" in sys.argv and self.FIRST_RUN:
ind = sys.argv.index('-WD')
self.WD = os.path.abspath(sys.argv[ind+1])
os.chdir(self.WD)
self.WD = ... | python | def get_dir(self):
"""
Choose a working directory dialog.
Called by self.get_dm_and_wd.
"""
if "-WD" in sys.argv and self.FIRST_RUN:
ind = sys.argv.index('-WD')
self.WD = os.path.abspath(sys.argv[ind+1])
os.chdir(self.WD)
self.WD = ... | [
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PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.on_btn_thellier_gui | def on_btn_thellier_gui(self, event):
"""
Open Thellier GUI
"""
if not self.check_for_meas_file():
return
if not self.check_for_uncombined_files():
return
outstring = "thellier_gui.py -WD %s"%self.WD
print("-I- running python script:\n %s"%... | python | def on_btn_thellier_gui(self, event):
"""
Open Thellier GUI
"""
if not self.check_for_meas_file():
return
if not self.check_for_uncombined_files():
return
outstring = "thellier_gui.py -WD %s"%self.WD
print("-I- running python script:\n %s"%... | [
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PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.on_btn_demag_gui | def on_btn_demag_gui(self, event):
"""
Open Demag GUI
"""
if not self.check_for_meas_file():
return
if not self.check_for_uncombined_files():
return
outstring = "demag_gui.py -WD %s"%self.WD
print("-I- running python script:\n %s"%(outstri... | python | def on_btn_demag_gui(self, event):
"""
Open Demag GUI
"""
if not self.check_for_meas_file():
return
if not self.check_for_uncombined_files():
return
outstring = "demag_gui.py -WD %s"%self.WD
print("-I- running python script:\n %s"%(outstri... | [
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PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.on_btn_convert_3 | def on_btn_convert_3(self, event):
"""
Open dialog for rough conversion of
2.5 files to 3.0 files.
Offer link to earthref for proper upgrade.
"""
dia = pw.UpgradeDialog(None)
dia.Center()
res = dia.ShowModal()
if res == wx.ID_CANCEL:
we... | python | def on_btn_convert_3(self, event):
"""
Open dialog for rough conversion of
2.5 files to 3.0 files.
Offer link to earthref for proper upgrade.
"""
dia = pw.UpgradeDialog(None)
dia.Center()
res = dia.ShowModal()
if res == wx.ID_CANCEL:
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PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.on_btn_metadata | def on_btn_metadata(self, event):
"""
Initiate the series of windows to add metadata
to the contribution.
"""
# make sure we have a measurements file
if not self.check_for_meas_file():
return
# make sure all files of the same type have been combined
... | python | def on_btn_metadata(self, event):
"""
Initiate the series of windows to add metadata
to the contribution.
"""
# make sure we have a measurements file
if not self.check_for_meas_file():
return
# make sure all files of the same type have been combined
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PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.init_check_window2 | def init_check_window2(self):
"""
initiates the object that will control steps 1-6
of checking headers, filling in cell values, etc.
"""
self.check_dia = pmag_er_magic_dialogs.ErMagicCheckFrame(self, 'Check Data',
s... | python | def init_check_window2(self):
"""
initiates the object that will control steps 1-6
of checking headers, filling in cell values, etc.
"""
self.check_dia = pmag_er_magic_dialogs.ErMagicCheckFrame(self, 'Check Data',
s... | [
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PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.init_check_window | def init_check_window(self):
"""
initiates the object that will control steps 1-6
of checking headers, filling in cell values, etc.
"""
self.check_dia = pmag_er_magic_dialogs.ErMagicCheckFrame3(self, 'Check Data',
... | python | def init_check_window(self):
"""
initiates the object that will control steps 1-6
of checking headers, filling in cell values, etc.
"""
self.check_dia = pmag_er_magic_dialogs.ErMagicCheckFrame3(self, 'Check Data',
... | [
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PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.on_btn_orientation | def on_btn_orientation(self, event):
"""
Create and fill wxPython grid for entering
orientation data.
"""
wait = wx.BusyInfo('Compiling required data, please wait...')
wx.SafeYield()
#dw, dh = wx.DisplaySize()
size = wx.DisplaySize()
size = (size[0... | python | def on_btn_orientation(self, event):
"""
Create and fill wxPython grid for entering
orientation data.
"""
wait = wx.BusyInfo('Compiling required data, please wait...')
wx.SafeYield()
#dw, dh = wx.DisplaySize()
size = wx.DisplaySize()
size = (size[0... | [
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PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.on_btn_unpack | def on_btn_unpack(self, event):
"""
Create dialog to choose a file to unpack
with download magic.
Then run download_magic and create self.contribution.
"""
dlg = wx.FileDialog(
None, message = "choose txt file to unpack",
defaultDir=self.WD,
... | python | def on_btn_unpack(self, event):
"""
Create dialog to choose a file to unpack
with download magic.
Then run download_magic and create self.contribution.
"""
dlg = wx.FileDialog(
None, message = "choose txt file to unpack",
defaultDir=self.WD,
... | [
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PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.on_btn_upload | def on_btn_upload(self, event):
"""
Try to run upload_magic.
Open validation mode if the upload file has problems.
"""
if not self.check_for_uncombined_files():
return
outstring="upload_magic.py"
print("-I- running python script:\n %s"%(outstring))
... | python | def on_btn_upload(self, event):
"""
Try to run upload_magic.
Open validation mode if the upload file has problems.
"""
if not self.check_for_uncombined_files():
return
outstring="upload_magic.py"
print("-I- running python script:\n %s"%(outstring))
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PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.on_end_validation | def on_end_validation(self, event):
"""
Switch back from validation mode to main Pmag GUI mode.
Hide validation frame and show main frame.
"""
self.Enable()
self.Show()
self.magic_gui_frame.Destroy() | python | def on_end_validation(self, event):
"""
Switch back from validation mode to main Pmag GUI mode.
Hide validation frame and show main frame.
"""
self.Enable()
self.Show()
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PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.on_menu_exit | def on_menu_exit(self, event):
"""
Exit the GUI
"""
# also delete appropriate copy file
try:
self.help_window.Destroy()
except:
pass
if '-i' in sys.argv:
self.Destroy()
try:
sys.exit() # can raise TypeError i... | python | def on_menu_exit(self, event):
"""
Exit the GUI
"""
# also delete appropriate copy file
try:
self.help_window.Destroy()
except:
pass
if '-i' in sys.argv:
self.Destroy()
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PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.check_for_uncombined_files | def check_for_uncombined_files(self):
"""
Go through working directory and check for uncombined files.
(I.e., location1_specimens.txt and location2_specimens.txt but no specimens.txt.)
Show a warning if uncombined files are found.
Return True if no uncombined files are found OR u... | python | def check_for_uncombined_files(self):
"""
Go through working directory and check for uncombined files.
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Show a warning if uncombined files are found.
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PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.check_for_meas_file | def check_for_meas_file(self):
"""
Check the working directory for a measurement file.
If not found, show a warning and return False.
Otherwise return True.
"""
if self.data_model_num == 2:
meas_file_name = "magic_measurements.txt"
dm = "2.5"
... | python | def check_for_meas_file(self):
"""
Check the working directory for a measurement file.
If not found, show a warning and return False.
Otherwise return True.
"""
if self.data_model_num == 2:
meas_file_name = "magic_measurements.txt"
dm = "2.5"
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PmagPy/PmagPy | programs/dayplot_magic.py | main | def main():
"""
NAME
dayplot_magic.py
DESCRIPTION
makes 'day plots' (Day et al. 1977) and squareness/coercivity,
plots 'linear mixing' curve from Dunlop and Carter-Stiglitz (2006).
squareness coercivity of remanence (Neel, 1955) plots after
Tauxe et al. (2002)
... | python | def main():
"""
NAME
dayplot_magic.py
DESCRIPTION
makes 'day plots' (Day et al. 1977) and squareness/coercivity,
plots 'linear mixing' curve from Dunlop and Carter-Stiglitz (2006).
squareness coercivity of remanence (Neel, 1955) plots after
Tauxe et al. (2002)
... | [
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squareness coercivity of remanence (Neel, 1955) plots after
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PmagPy/PmagPy | dialogs/pmag_gui_menu2.py | MagICMenu.on_import1 | def on_import1(self, event):
"""
initialize window to import an arbitrary file into the working directory
"""
pmag_menu_dialogs.MoveFileIntoWD(self.parent, self.parent.WD) | python | def on_import1(self, event):
"""
initialize window to import an arbitrary file into the working directory
"""
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PmagPy/PmagPy | dialogs/pmag_gui_menu2.py | MagICMenu.orient_import2 | def orient_import2(self, event):
"""
initialize window to import an AzDip format file into the working directory
"""
pmag_menu_dialogs.ImportAzDipFile(self.parent, self.parent.WD) | python | def orient_import2(self, event):
"""
initialize window to import an AzDip format file into the working directory
"""
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PmagPy/PmagPy | programs/plot_map_pts.py | main | def main():
"""
NAME
plot_map_pts.py
DESCRIPTION
plots points on map
SYNTAX
plot_map_pts.py [command line options]
OPTIONS
-h prints help and quits
-sym [ro, bs, g^, r., b-, etc.] [1,5,10] symbol and size for points
colors are r=red,b=blue,g=g... | python | def main():
"""
NAME
plot_map_pts.py
DESCRIPTION
plots points on map
SYNTAX
plot_map_pts.py [command line options]
OPTIONS
-h prints help and quits
-sym [ro, bs, g^, r., b-, etc.] [1,5,10] symbol and size for points
colors are r=red,b=blue,g=g... | [
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PmagPy/PmagPy | programs/s_hext.py | main | def main():
"""
NAME
s_hext.py
DESCRIPTION
calculates Hext statistics for tensor data
SYNTAX
s_hext.py [-h][-i][-f file] [<filename]
OPTIONS
-h prints help message and quits
-f file specifies filename on command line
-l NMEAS do line by line instead of... | python | def main():
"""
NAME
s_hext.py
DESCRIPTION
calculates Hext statistics for tensor data
SYNTAX
s_hext.py [-h][-i][-f file] [<filename]
OPTIONS
-h prints help message and quits
-f file specifies filename on command line
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s_hext.py
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calculates Hext statistics for tensor data
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PmagPy/PmagPy | data_files/LearningPython/UTM.py | _UTMLetterDesignator | def _UTMLetterDesignator(Lat):
"""
This routine determines the correct UTM letter designator for the given latitude
returns 'Z' if latitude is outside the UTM limits of 84N to 80S
Written by Chuck Gantz- chuck.gantz@globalstar.com
"""
if 84 >= Lat >= 72: return 'X'
... | python | def _UTMLetterDesignator(Lat):
"""
This routine determines the correct UTM letter designator for the given latitude
returns 'Z' if latitude is outside the UTM limits of 84N to 80S
Written by Chuck Gantz- chuck.gantz@globalstar.com
"""
if 84 >= Lat >= 72: return 'X'
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PmagPy/PmagPy | data_files/LearningPython/UTM.py | UTMtoLL | def UTMtoLL(ReferenceEllipsoid, easting, northing, zone):
"""
converts UTM coords to lat/long. Equations from USGS Bulletin 1532
East Longitudes are positive, West longitudes are negative.
North latitudes are positive, South latitudes are negative
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"""
converts UTM coords to lat/long. Equations from USGS Bulletin 1532
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PmagPy/PmagPy | programs/magic_gui.py | MainFrame.InitUI | def InitUI(self):
"""
Make main user interface
"""
bSizer0 = wx.StaticBoxSizer(
wx.StaticBox(self.panel, wx.ID_ANY, "Choose MagIC project directory", name='bSizer0'), wx.HORIZONTAL
)
self.dir_path = wx.TextCtrl(self.panel, id=-1, size=(600, 25), style=wx.TE_RE... | python | def InitUI(self):
"""
Make main user interface
"""
bSizer0 = wx.StaticBoxSizer(
wx.StaticBox(self.panel, wx.ID_ANY, "Choose MagIC project directory", name='bSizer0'), wx.HORIZONTAL
)
self.dir_path = wx.TextCtrl(self.panel, id=-1, size=(600, 25), style=wx.TE_RE... | [
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PmagPy/PmagPy | programs/magic_gui.py | MainFrame.on_change_dir_button | def on_change_dir_button(self, event=None):
"""
create change directory frame
"""
currentDirectory = self.WD #os.getcwd()
change_dir_dialog = wx.DirDialog(self.panel,
"Choose your working directory to create or edit a MagIC contribution:",... | python | def on_change_dir_button(self, event=None):
"""
create change directory frame
"""
currentDirectory = self.WD #os.getcwd()
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PmagPy/PmagPy | programs/magic_gui.py | MainFrame.make_grid_frame | def make_grid_frame(self, event):
"""
Create a GridFrame for data type of the button that was clicked
"""
if self.grid_frame:
print('-I- You already have a grid frame open')
pw.simple_warning("You already have a grid open")
return
try:
... | python | def make_grid_frame(self, event):
"""
Create a GridFrame for data type of the button that was clicked
"""
if self.grid_frame:
print('-I- You already have a grid frame open')
pw.simple_warning("You already have a grid open")
return
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] | train | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/magic_gui.py#L287-L378 |
PmagPy/PmagPy | programs/magic_gui.py | MainFrame.highlight_problems | def highlight_problems(self, has_problems):
"""
Outline grid buttons in red if they have validation errors
"""
if has_problems:
self.validation_mode = set(has_problems)
# highlighting doesn't work with Windows
if sys.platform in ['win32', 'win62']:
... | python | def highlight_problems(self, has_problems):
"""
Outline grid buttons in red if they have validation errors
"""
if has_problems:
self.validation_mode = set(has_problems)
# highlighting doesn't work with Windows
if sys.platform in ['win32', 'win62']:
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"'win32'"... | Outline grid buttons in red if they have validation errors | [
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] | train | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/magic_gui.py#L402-L431 |
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