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PmagPy/PmagPy | programs/magic_gui.py | MainFrame.reset_highlights | def reset_highlights(self):
"""
Remove red outlines from all buttons
"""
for dtype in ["specimens", "samples", "sites", "locations", "ages"]:
wind = self.FindWindowByName(dtype + '_btn')
wind.Unbind(wx.EVT_PAINT, handler=self.highlight_button)
self.Refresh... | python | def reset_highlights(self):
"""
Remove red outlines from all buttons
"""
for dtype in ["specimens", "samples", "sites", "locations", "ages"]:
wind = self.FindWindowByName(dtype + '_btn')
wind.Unbind(wx.EVT_PAINT, handler=self.highlight_button)
self.Refresh... | [
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PmagPy/PmagPy | programs/magic_gui.py | MainFrame.highlight_button | def highlight_button(self, event):
"""
Draw a red highlight line around the event object
"""
wind = event.GetEventObject()
pos = wind.GetPosition()
size = wind.GetSize()
try:
dc = wx.PaintDC(self)
except wx._core.PyAssertionError:
#... | python | def highlight_button(self, event):
"""
Draw a red highlight line around the event object
"""
wind = event.GetEventObject()
pos = wind.GetPosition()
size = wind.GetSize()
try:
dc = wx.PaintDC(self)
except wx._core.PyAssertionError:
#... | [
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PmagPy/PmagPy | programs/magic_gui.py | MagICMenu.on_clear | def on_clear(self, event):
"""
initialize window to allow user to empty the working directory
"""
dia = pmag_menu_dialogs.ClearWD(self.parent, self.parent.WD)
clear = dia.do_clear()
if clear:
print('-I- Clear data object')
self.contribution = cb.Co... | python | def on_clear(self, event):
"""
initialize window to allow user to empty the working directory
"""
dia = pmag_menu_dialogs.ClearWD(self.parent, self.parent.WD)
clear = dia.do_clear()
if clear:
print('-I- Clear data object')
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PmagPy/PmagPy | programs/magic_gui.py | MagICMenu.on_close_grid | def on_close_grid(self, event):
"""
If there is an open grid, save its data and close it.
"""
if self.parent.grid_frame:
self.parent.grid_frame.onSave(None)
self.parent.grid_frame.Destroy() | python | def on_close_grid(self, event):
"""
If there is an open grid, save its data and close it.
"""
if self.parent.grid_frame:
self.parent.grid_frame.onSave(None)
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PmagPy/PmagPy | programs/k15_s.py | main | def main():
"""
NAME
k15_s.py
DESCRIPTION
converts .k15 format data to .s format.
assumes Jelinek Kappabridge measurement scheme
SYNTAX
k15_s.py [-h][-i][command line options][<filename]
OPTIONS
-h prints help message and quits
-i allows inte... | python | def main():
"""
NAME
k15_s.py
DESCRIPTION
converts .k15 format data to .s format.
assumes Jelinek Kappabridge measurement scheme
SYNTAX
k15_s.py [-h][-i][command line options][<filename]
OPTIONS
-h prints help message and quits
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k15_s.py
DESCRIPTION
converts .k15 format data to .s format.
assumes Jelinek Kappabridge measurement scheme
SYNTAX
k15_s.py [-h][-i][command line options][<filename]
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PmagPy/PmagPy | programs/deprecated/zeq_magic_redo.py | main | def main():
"""
NAME
zeq_magic_redo.py
DESCRIPTION
Calculate principal components through demagnetization data using bounds and calculation type stored in "redo" file
SYNTAX
zeq_magic_redo.py [command line options]
OPTIONS
-h prints help message
-usr U... | python | def main():
"""
NAME
zeq_magic_redo.py
DESCRIPTION
Calculate principal components through demagnetization data using bounds and calculation type stored in "redo" file
SYNTAX
zeq_magic_redo.py [command line options]
OPTIONS
-h prints help message
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zeq_magic_redo.py
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zeq_magic_redo.py [command line options]
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PmagPy/PmagPy | programs/dipole_plat.py | main | def main():
"""
NAME
dipole_plat.py
DESCRIPTION
gives paleolatitude from given inclination, assuming GAD field
SYNTAX
dipole_plat.py [command line options]<filename
OPTIONS
-h prints help message and quits
-i allows interactive entry of latitude
-... | python | def main():
"""
NAME
dipole_plat.py
DESCRIPTION
gives paleolatitude from given inclination, assuming GAD field
SYNTAX
dipole_plat.py [command line options]<filename
OPTIONS
-h prints help message and quits
-i allows interactive entry of latitude
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dipole_plat.py
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gives paleolatitude from given inclination, assuming GAD field
SYNTAX
dipole_plat.py [command line options]<filename
OPTIONS
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PmagPy/PmagPy | programs/zeq_magic.py | main | def main():
"""
NAME
zeq_magic.py
DESCRIPTION
reads in a MagIC measurements formatted file, makes plots of remanence decay
during demagnetization experiments. Reads in prior interpretations saved in
a specimens formatted file interpretations in a specimens file.
inte... | python | def main():
"""
NAME
zeq_magic.py
DESCRIPTION
reads in a MagIC measurements formatted file, makes plots of remanence decay
during demagnetization experiments. Reads in prior interpretations saved in
a specimens formatted file interpretations in a specimens file.
inte... | [
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PmagPy/PmagPy | programs/conversion_scripts2/iodp_dscr_magic2.py | main | def main(command_line=True, **kwargs):
"""
NAME
iodp_dscr_magic.py
DESCRIPTION
converts ODP LIMS discrete sample format files to magic_measurements format files
SYNTAX
iodp_descr_magic.py [command line options]
OPTIONS
-h: prints the help message and quits.
... | python | def main(command_line=True, **kwargs):
"""
NAME
iodp_dscr_magic.py
DESCRIPTION
converts ODP LIMS discrete sample format files to magic_measurements format files
SYNTAX
iodp_descr_magic.py [command line options]
OPTIONS
-h: prints the help message and quits.
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iodp_descr_magic.py [command line options]
OPTIONS
-h: prints the help message and quits.
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PmagPy/PmagPy | programs/conversion_scripts2/sio_magic2.py | main | def main(command_line=True, **kwargs):
"""
NAME
sio_magic.py
DESCRIPTION
converts SIO .mag format files to magic_measurements format files
SYNTAX
sio_magic.py [command line options]
OPTIONS
-h: prints the help message and quits.
-usr USER: identify user, ... | python | def main(command_line=True, **kwargs):
"""
NAME
sio_magic.py
DESCRIPTION
converts SIO .mag format files to magic_measurements format files
SYNTAX
sio_magic.py [command line options]
OPTIONS
-h: prints the help message and quits.
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PmagPy/PmagPy | SPD/lib/new_lib_curvature.py | fitcircle | def fitcircle(n, x, y):
# n points, x points, y points
"""c Fit circle to arbitrary number of x,y pairs, based on the
c modified least squares method of Umback and Jones (2000),
c IEEE Transactions on Instrumentation and Measurement."""
# adding in normalize vectors step
#x = numpy.array(x) / max(x)
#y... | python | def fitcircle(n, x, y):
# n points, x points, y points
"""c Fit circle to arbitrary number of x,y pairs, based on the
c modified least squares method of Umback and Jones (2000),
c IEEE Transactions on Instrumentation and Measurement."""
# adding in normalize vectors step
#x = numpy.array(x) / max(x)
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PmagPy/PmagPy | programs/vgp_di.py | main | def main():
"""
NAME
vgp_di.py
DESCRIPTION
converts site latitude, longitude and pole latitude, longitude to declination, inclination
SYNTAX
vgp_di.py [-h] [-i] [-f FILE] [< filename]
OPTIONS
-h prints help message and quits
-i interactive data entry
... | python | def main():
"""
NAME
vgp_di.py
DESCRIPTION
converts site latitude, longitude and pole latitude, longitude to declination, inclination
SYNTAX
vgp_di.py [-h] [-i] [-f FILE] [< filename]
OPTIONS
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PmagPy/PmagPy | dev_setup.py | unix_install | def unix_install():
"""
Edits or creates .bashrc, .bash_profile, and .profile files in the users
HOME directory in order to add your current directory (hopefully your
PmagPy directory) and assorted lower directories in the PmagPy/programs
directory to your PATH environment variable. It also adds the... | python | def unix_install():
"""
Edits or creates .bashrc, .bash_profile, and .profile files in the users
HOME directory in order to add your current directory (hopefully your
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PmagPy/PmagPy | dev_setup.py | windows_install | def windows_install(path_to_python=""):
"""
Sets the .py extension to be associated with the ftype Python which is
then set to the python.exe you provide in the path_to_python variable or
after the -p flag if run as a script. Once the python environment is set
up the function proceeds to set PATH an... | python | def windows_install(path_to_python=""):
"""
Sets the .py extension to be associated with the ftype Python which is
then set to the python.exe you provide in the path_to_python variable or
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PmagPy/PmagPy | programs/pmag_results_extract.py | main | def main():
"""
NAME
pmag_results_extract.py
DESCRIPTION
make a tab delimited output file from pmag_results table
SYNTAX
pmag_results_extract.py [command line options]
OPTIONS
-h prints help message and quits
-f RFILE, specify pmag_results table; default ... | python | def main():
"""
NAME
pmag_results_extract.py
DESCRIPTION
make a tab delimited output file from pmag_results table
SYNTAX
pmag_results_extract.py [command line options]
OPTIONS
-h prints help message and quits
-f RFILE, specify pmag_results table; default ... | [
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pmag_results_extract.py
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make a tab delimited output file from pmag_results table
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PmagPy/PmagPy | programs/replace_ac_specimens.py | main | def main():
"""
NAME
replace_AC_specimens.py
DESCRIPTION
finds anisotropy corrected data and
replaces that specimen with it.
puts in pmag_specimen format file
SYNTAX
replace_AC_specimens.py [command line options]
OPTIONS
-h prints help mes... | python | def main():
"""
NAME
replace_AC_specimens.py
DESCRIPTION
finds anisotropy corrected data and
replaces that specimen with it.
puts in pmag_specimen format file
SYNTAX
replace_AC_specimens.py [command line options]
OPTIONS
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replace_AC_specimens.py
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PmagPy/PmagPy | dialogs/thellier_gui_lib.py | check_specimen_PI_criteria | def check_specimen_PI_criteria(pars,acceptance_criteria):
'''
# Check if specimen pass Acceptance criteria
'''
#if 'pars' not in self.Data[specimen].kes():
# return
pars['specimen_fail_criteria']=[]
for crit in list(acceptance_criteria.keys()):
if crit not in list(pars.keys()):
... | python | def check_specimen_PI_criteria(pars,acceptance_criteria):
'''
# Check if specimen pass Acceptance criteria
'''
#if 'pars' not in self.Data[specimen].kes():
# return
pars['specimen_fail_criteria']=[]
for crit in list(acceptance_criteria.keys()):
if crit not in list(pars.keys()):
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PmagPy/PmagPy | programs/grab_magic_key.py | main | def main():
"""
NAME
grab_magic_key.py
DESCRIPTION
picks out key and saves to file
SYNTAX
grab_magic_key.py [command line optins]
OPTIONS
-h prints help message and quits
-f FILE: specify input magic format file
-key KEY: specify key to print to sta... | python | def main():
"""
NAME
grab_magic_key.py
DESCRIPTION
picks out key and saves to file
SYNTAX
grab_magic_key.py [command line optins]
OPTIONS
-h prints help message and quits
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grab_magic_key.py
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picks out key and saves to file
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grab_magic_key.py [command line optins]
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PmagPy/PmagPy | programs/dia_vgp.py | main | def main():
"""
NAME
dia_vgp.py
DESCRIPTION
converts declination inclination alpha95 to virtual geomagnetic pole, dp and dm
SYNTAX
dia_vgp.py [-h] [-i] [-f FILE] [< filename]
OPTIONS
-h prints help message and quits
-i interactive data entry
-f... | python | def main():
"""
NAME
dia_vgp.py
DESCRIPTION
converts declination inclination alpha95 to virtual geomagnetic pole, dp and dm
SYNTAX
dia_vgp.py [-h] [-i] [-f FILE] [< filename]
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dia_vgp.py
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PmagPy/PmagPy | programs/plot_2cdfs.py | main | def main():
"""
NAME
plot_2cdfs.py
DESCRIPTION
makes plots of cdfs of data in input file
SYNTAX
plot_2cdfs.py [-h][command line options]
OPTIONS
-h prints help message and quits
-f FILE1 FILE2
-t TITLE
-fmt [svg,eps,png,pdf,jpg..] specify f... | python | def main():
"""
NAME
plot_2cdfs.py
DESCRIPTION
makes plots of cdfs of data in input file
SYNTAX
plot_2cdfs.py [-h][command line options]
OPTIONS
-h prints help message and quits
-f FILE1 FILE2
-t TITLE
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plot_2cdfs.py
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makes plots of cdfs of data in input file
SYNTAX
plot_2cdfs.py [-h][command line options]
OPTIONS
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PmagPy/PmagPy | programs/lowrie_magic.py | main | def main():
"""
NAME
lowrie_magic.py
DESCRIPTION
plots intensity decay curves for Lowrie experiments
SYNTAX
lowrie_magic.py -h [command line options]
INPUT
takes measurements formatted input files
OPTIONS
-h prints help message and quits
-f FILE:... | python | def main():
"""
NAME
lowrie_magic.py
DESCRIPTION
plots intensity decay curves for Lowrie experiments
SYNTAX
lowrie_magic.py -h [command line options]
INPUT
takes measurements formatted input files
OPTIONS
-h prints help message and quits
-f FILE:... | [
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lowrie_magic.py
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plots intensity decay curves for Lowrie experiments
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lowrie_magic.py -h [command line options]
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PmagPy/PmagPy | programs/deprecated/reorder_samples.py | main | def main():
"""
NAME
reorder_samples.py
DESCRIPTION
takes specimen file and reorders sample file with selected orientation methods placed first
SYNTAX
reorder_samples.py [command line options]
OPTIONS
-h prints help message and quits
-fsp: specimen input pm... | python | def main():
"""
NAME
reorder_samples.py
DESCRIPTION
takes specimen file and reorders sample file with selected orientation methods placed first
SYNTAX
reorder_samples.py [command line options]
OPTIONS
-h prints help message and quits
-fsp: specimen input pm... | [
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reorder_samples.py
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takes specimen file and reorders sample file with selected orientation methods placed first
SYNTAX
reorder_samples.py [command line options]
OPTIONS
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PmagPy/PmagPy | pmagpy/contribution_builder.py | not_null | def not_null(val, zero_as_null=True):
"""
Comprehensive check to see if a value is null or not.
Returns True for: non-empty iterables, True, non-zero floats and ints,
non-emtpy strings.
Returns False for: empty iterables, False, zero, empty strings.
Parameters
----------
val : any Pytho... | python | def not_null(val, zero_as_null=True):
"""
Comprehensive check to see if a value is null or not.
Returns True for: non-empty iterables, True, non-zero floats and ints,
non-emtpy strings.
Returns False for: empty iterables, False, zero, empty strings.
Parameters
----------
val : any Pytho... | [
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PmagPy/PmagPy | pmagpy/contribution_builder.py | get_intensity_col | def get_intensity_col(data):
"""
Check measurement dataframe for intensity columns 'magn_moment', 'magn_volume', 'magn_mass','magn_uncal'.
Return the first intensity column that is in the dataframe AND has data.
Parameters
----------
data : pandas DataFrame
Returns
---------
str
... | python | def get_intensity_col(data):
"""
Check measurement dataframe for intensity columns 'magn_moment', 'magn_volume', 'magn_mass','magn_uncal'.
Return the first intensity column that is in the dataframe AND has data.
Parameters
----------
data : pandas DataFrame
Returns
---------
str
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PmagPy/PmagPy | pmagpy/contribution_builder.py | add_sites_to_meas_table | def add_sites_to_meas_table(dir_path):
"""
Add site columns to measurements table (e.g., to plot intensity data),
or generate an informative error message.
Parameters
----------
dir_path : str
directory with data files
Returns
----------
status : bool
True if succe... | python | def add_sites_to_meas_table(dir_path):
"""
Add site columns to measurements table (e.g., to plot intensity data),
or generate an informative error message.
Parameters
----------
dir_path : str
directory with data files
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----------
status : bool
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PmagPy/PmagPy | pmagpy/contribution_builder.py | prep_for_intensity_plot | def prep_for_intensity_plot(data, meth_code, dropna=(), reqd_cols=()):
"""
Strip down measurement data to what is needed for an intensity plot.
Find the column with intensity data.
Drop empty columns, and make sure required columns are present.
Keep only records with the specified method code.
... | python | def prep_for_intensity_plot(data, meth_code, dropna=(), reqd_cols=()):
"""
Strip down measurement data to what is needed for an intensity plot.
Find the column with intensity data.
Drop empty columns, and make sure required columns are present.
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PmagPy/PmagPy | pmagpy/contribution_builder.py | stringify_col | def stringify_col(df, col_name):
"""
Take a dataframe and string-i-fy a column of values.
Turn nan/None into "" and all other values into strings.
Parameters
----------
df : dataframe
col_name : string
"""
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df[col_name] = df[col_name].fillna("")
df[col_name] = ... | python | def stringify_col(df, col_name):
"""
Take a dataframe and string-i-fy a column of values.
Turn nan/None into "" and all other values into strings.
Parameters
----------
df : dataframe
col_name : string
"""
df = df.copy()
df[col_name] = df[col_name].fillna("")
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.add_empty_magic_table | def add_empty_magic_table(self, dtype, col_names=None, groups=None):
"""
Add a blank MagicDataFrame to the contribution.
You can provide either a list of column names,
or a list of column group names.
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.add_magic_table_from_data | def add_magic_table_from_data(self, dtype, data):
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Parameters
----------
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MagIC table type, i.e. 'specimens'
data : list of dicts
data list with format [{'key1': 'val1', ...}, {'... | python | def add_magic_table_from_data(self, dtype, data):
"""
Add a MagIC table to the contribution from a data list
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dtype : str
MagIC table type, i.e. 'specimens'
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.add_magic_table | def add_magic_table(self, dtype, fname=None, df=None):
"""
Read in a new file to add a table to self.tables.
Requires dtype argument and EITHER filename or df.
Parameters
----------
dtype : str
MagIC table name (plural, i.e. 'specimens')
fname : str
... | python | def add_magic_table(self, dtype, fname=None, df=None):
"""
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.propagate_measurement_info | def propagate_measurement_info(self):
"""
Take a contribution with a measurement table.
Create specimen, sample, site, and location tables
using the unique names in the measurement table to fill in
the index.
"""
meas_df = self.tables['measurements'].df
na... | python | def propagate_measurement_info(self):
"""
Take a contribution with a measurement table.
Create specimen, sample, site, and location tables
using the unique names in the measurement table to fill in
the index.
"""
meas_df = self.tables['measurements'].df
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.propagate_all_tables_info | def propagate_all_tables_info(self, write=True):
"""
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tables other than measurements and make sure they each have a
row in their own table. For example, if a site name is in
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"""
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.get_parent_and_child | def get_parent_and_child(self, table_name):
"""
Get the name of the parent table and the child table
for a given MagIC table name.
Parameters
----------
table_name : string of MagIC table name ['specimens', 'samples', 'sites', 'locations']
Returns
------... | python | def get_parent_and_child(self, table_name):
"""
Get the name of the parent table and the child table
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table_name : string of MagIC table name ['specimens', 'samples', 'sites', 'locations']
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.get_min_max_lat_lon | def get_min_max_lat_lon(self):
"""
Find latitude/longitude information from sites table
and group it by location.
Returns
---------
"""
if 'sites' not in self.tables:
return
# get min/max lat/lon from sites table
site_container = self.... | python | def get_min_max_lat_lon(self):
"""
Find latitude/longitude information from sites table
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.propagate_lithology_cols | def propagate_lithology_cols(self):
"""
Propagate any data from lithologies, geologic_types, or geologic_classes
from the sites table to the samples and specimens table.
In the samples/specimens tables, null or "Not Specified" values
will be overwritten based on the data from the... | python | def propagate_lithology_cols(self):
"""
Propagate any data from lithologies, geologic_types, or geologic_classes
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.rename_item | def rename_item(self, table_name, item_old_name, item_new_name):
"""
Rename item (such as a site) everywhere that it occurs.
This change often spans multiple tables.
For example, a site name will occur in the sites table,
the samples table, and possibly in the locations/ages tabl... | python | def rename_item(self, table_name, item_old_name, item_new_name):
"""
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.get_table_name | def get_table_name(self, ind):
"""
Return both the table_name (i.e., 'specimens')
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for a given index in self.ancestry.
"""
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return "", ""
if ind > -1:
table_name = self.ancestr... | python | def get_table_name(self, ind):
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.propagate_name_down | def propagate_name_down(self, col_name, df_name, verbose=False):
"""
Put the data for "col_name" into dataframe with df_name
Used to add 'site_name' to specimen table, for example.
"""
if df_name not in self.tables:
table = self.add_magic_table(df_name)[1]
... | python | def propagate_name_down(self, col_name, df_name, verbose=False):
"""
Put the data for "col_name" into dataframe with df_name
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"""
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.propagate_cols | def propagate_cols(self, col_names, target_df_name, source_df_name,
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"""
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.propagate_cols_up | def propagate_cols_up(self, cols, target_df_name, source_df_name):
"""
Take values from source table, compile them into a colon-delimited list,
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supply values where they are mi... | python | def propagate_cols_up(self, cols, target_df_name, source_df_name):
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.propagate_average_up | def propagate_average_up(self, cols=['lat', 'lon'],
target_df_name='sites', source_df_name='samples'):
"""
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.propagate_min_max_up | def propagate_min_max_up(self, cols=['age'],
target_df_name='locations',
source_df_name='sites',
min_suffix='low',
max_suffix='high'):
"""
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target_df_name='locations',
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max_suffix='high'):
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.get_age_levels | def get_age_levels(self):
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Finds the lowest filled in level (i.e., specimen, sample, etc.)
for that particular row.
I.e., a row with both site and sample name filled in is considered
a sample-level age.
Returns... | python | def get_age_levels(self):
"""
Method to add a "level" column to the ages table.
Finds the lowest filled in level (i.e., specimen, sample, etc.)
for that particular row.
I.e., a row with both site and sample name filled in is considered
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.propagate_ages | def propagate_ages(self):
"""
Mine ages table for any age data, and write it into
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Do not overwrite existing age data.
"""
# if there is no age table, skip
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# if ag... | python | def propagate_ages(self):
"""
Mine ages table for any age data, and write it into
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.remove_non_magic_cols | def remove_non_magic_cols(self):
"""
Remove all non-MagIC columns from all tables.
"""
for table_name in self.tables:
table = self.tables[table_name]
table.remove_non_magic_cols_from_table() | python | def remove_non_magic_cols(self):
"""
Remove all non-MagIC columns from all tables.
"""
for table_name in self.tables:
table = self.tables[table_name]
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.write_table_to_file | def write_table_to_file(self, dtype, custom_name=None, append=False, dir_path=None):
"""
Write out a MagIC table to file, using custom filename
as specified in self.filenames.
Parameters
----------
dtype : str
magic table name
"""
if custom_na... | python | def write_table_to_file(self, dtype, custom_name=None, append=False, dir_path=None):
"""
Write out a MagIC table to file, using custom filename
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Parameters
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dtype : str
magic table name
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.remove_names | def remove_names(self, dtype):
"""
Remove unneeded name columns ('specimen'/'sample'/etc)
from the specified table.
Parameters
----------
dtype : str
Returns
---------
pandas DataFrame without the unneeded columns
Example
-------... | python | def remove_names(self, dtype):
"""
Remove unneeded name columns ('specimen'/'sample'/etc)
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Parameters
----------
dtype : str
Returns
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pandas DataFrame without the unneeded columns
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.find_missing_items | def find_missing_items(self, dtype):
"""
Find any items that are referenced in a child table
but are missing in their own table.
For example, a site that is listed in the samples table,
but has no entry in the sites table.
Parameters
----------
dtype : st... | python | def find_missing_items(self, dtype):
"""
Find any items that are referenced in a child table
but are missing in their own table.
For example, a site that is listed in the samples table,
but has no entry in the sites table.
Parameters
----------
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PmagPy/PmagPy | pmagpy/contribution_builder.py | Contribution.get_con_id | def get_con_id(self):
"""
Return contribution id if available
"""
con_id = ""
if "contribution" in self.tables:
if "id" in self.tables["contribution"].df.columns:
con_id = str(self.tables["contribution"].df["id"].values[0])
return con_id | python | def get_con_id(self):
"""
Return contribution id if available
"""
con_id = ""
if "contribution" in self.tables:
if "id" in self.tables["contribution"].df.columns:
con_id = str(self.tables["contribution"].df["id"].values[0])
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PmagPy/PmagPy | pmagpy/contribution_builder.py | MagicDataFrame.all_to_str | def all_to_str(self):
"""
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"""
def stringify(x):
# float --> string,
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"""
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PmagPy/PmagPy | pmagpy/contribution_builder.py | MagicDataFrame.remove_non_magic_cols_from_table | def remove_non_magic_cols_from_table(self, ignore_cols=()):
"""
Remove all non-magic columns from self.df.
Changes in place.
Parameters
----------
ignore_cols : list-like
columns not to remove, whether they are proper
MagIC columns or not
... | python | def remove_non_magic_cols_from_table(self, ignore_cols=()):
"""
Remove all non-magic columns from self.df.
Changes in place.
Parameters
----------
ignore_cols : list-like
columns not to remove, whether they are proper
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PmagPy/PmagPy | pmagpy/contribution_builder.py | MagicDataFrame.update_row | def update_row(self, ind, row_data):
"""
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Must provide the specific numeric index (not row label).
If any new keys are present in row_data dictionary,
that column will be added to the dataframe.
This is done inplace.
"""
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"""
Update a row with data.
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If any new keys are present in row_data dictionary,
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PmagPy/PmagPy | pmagpy/contribution_builder.py | MagicDataFrame.add_row | def add_row(self, label, row_data, columns=""):
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Add a row with data.
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PmagPy/PmagPy | pmagpy/contribution_builder.py | MagicDataFrame.add_data | def add_data(self, data): # add append option later
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data : list of dicts
data list with format [{'key1': 'val1', ...}, {'key1': 'val2', ...}, ... }]
dtype : str
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"""
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PmagPy/PmagPy | pmagpy/contribution_builder.py | MagicDataFrame.add_blank_row | def add_blank_row(self, label):
"""
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This is done inplace.
"""
col_labels = self.df.columns
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# use .loc to add in place (append won't do that)
self.... | python | def add_blank_row(self, label):
"""
Add a blank row with only an index value to self.df.
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PmagPy/PmagPy | pmagpy/contribution_builder.py | MagicDataFrame.delete_row | def delete_row(self, ind):
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PmagPy/PmagPy | pmagpy/contribution_builder.py | MagicDataFrame.delete_rows | def delete_rows(self, condition, info_str=None):
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PmagPy/PmagPy | pmagpy/contribution_builder.py | MagicDataFrame.update_record | def update_record(self, name, new_data, condition, update_only=False,
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PmagPy/PmagPy | pmagpy/contribution_builder.py | MagicDataFrame.sort_dataframe_cols | def sort_dataframe_cols(self):
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groups = list(map(lambda x: self.data_model.get_group_for_col(self.dt... | python | def sort_dataframe_cols(self):
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PmagPy/PmagPy | pmagpy/contribution_builder.py | MagicDataFrame.find_filled_col | def find_filled_col(self, col_list):
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PmagPy/PmagPy | pmagpy/contribution_builder.py | MagicDataFrame.convert_to_pmag_data_list | def convert_to_pmag_data_list(self, lst_or_dict="lst", df=None):
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PmagPy/PmagPy | pmagpy/contribution_builder.py | MagicDataFrame.get_name | def get_name(self, col_name, df_slice="", index_names=""):
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PmagPy/PmagPy | pmagpy/contribution_builder.py | MagicDataFrame.get_di_block | def get_di_block(self, df_slice=None, do_index=False,
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PmagPy/PmagPy | pmagpy/contribution_builder.py | MagicDataFrame.get_records_for_code | def get_records_for_code(self, meth_code, incl=True, use_slice=False,
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PmagPy/PmagPy | pmagpy/contribution_builder.py | MagicDataFrame.merge_dfs | def merge_dfs(self, df1):
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PmagPy/PmagPy | pmagpy/contribution_builder.py | MagicDataFrame.write_magic_file | def write_magic_file(self, custom_name=None, dir_path=".",
append=False, multi_type=False, df=None):
"""
Write self.df out to tab-delimited file.
By default will use standard MagIC filenames (specimens.txt, etc.),
or you can provide a custom_name to write to inst... | python | def write_magic_file(self, custom_name=None, dir_path=".",
append=False, multi_type=False, df=None):
"""
Write self.df out to tab-delimited file.
By default will use standard MagIC filenames (specimens.txt, etc.),
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PmagPy/PmagPy | pmagpy/contribution_builder.py | MagicDataFrame.get_non_magic_cols | def get_non_magic_cols(self):
"""
Find all columns in self.df that are not real MagIC 3 columns.
Returns
--------
unrecognized_cols : list
"""
table_dm = self.data_model.dm[self.dtype]
approved_cols = table_dm.index
unrecognized_cols = (set(self.d... | python | def get_non_magic_cols(self):
"""
Find all columns in self.df that are not real MagIC 3 columns.
Returns
--------
unrecognized_cols : list
"""
table_dm = self.data_model.dm[self.dtype]
approved_cols = table_dm.index
unrecognized_cols = (set(self.d... | [
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PmagPy/PmagPy | pmagpy/contribution_builder.py | MagicDataFrame.get_first_non_null_value | def get_first_non_null_value(self, ind_name, col_name):
"""
For a given index and column, find the first non-null value.
Parameters
----------
self : MagicDataFrame
ind_name : str
index name for indexing
col_name : str
column name for inde... | python | def get_first_non_null_value(self, ind_name, col_name):
"""
For a given index and column, find the first non-null value.
Parameters
----------
self : MagicDataFrame
ind_name : str
index name for indexing
col_name : str
column name for inde... | [
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PmagPy/PmagPy | pmagpy/contribution_builder.py | MagicDataFrame.get_singular_and_plural_dtype | def get_singular_and_plural_dtype(self, dtype):
"""
Parameters
----------
dtype : str
MagIC table type (specimens, samples, contribution, etc.)
Returns
---------
name : str
singular name for MagIC table ('specimen' for specimens table, etc.... | python | def get_singular_and_plural_dtype(self, dtype):
"""
Parameters
----------
dtype : str
MagIC table type (specimens, samples, contribution, etc.)
Returns
---------
name : str
singular name for MagIC table ('specimen' for specimens table, etc.... | [
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PmagPy/PmagPy | programs/chi_magic2.py | main | def main():
"""
NAME
chi_magic.py
DESCRIPTION
plots magnetic susceptibility as a function of frequency and temperature and AC field
SYNTAX
chi_magic.py [command line options]
OPTIONS
-h prints help message and quits
-i allows interactive setting of FILE and... | python | def main():
"""
NAME
chi_magic.py
DESCRIPTION
plots magnetic susceptibility as a function of frequency and temperature and AC field
SYNTAX
chi_magic.py [command line options]
OPTIONS
-h prints help message and quits
-i allows interactive setting of FILE and... | [
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chi_magic.py
DESCRIPTION
plots magnetic susceptibility as a function of frequency and temperature and AC field
SYNTAX
chi_magic.py [command line options]
OPTIONS
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... | [
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PmagPy/PmagPy | programs/hysteresis_magic.py | main | def main():
"""
NAME
hysteresis_magic.py
DESCRIPTION
calculates hystereis parameters and saves them in 3.0 specimen format file
makes plots if option selected
SYNTAX
hysteresis_magic.py [command line options]
OPTIONS
-h prints help message and quits
... | python | def main():
"""
NAME
hysteresis_magic.py
DESCRIPTION
calculates hystereis parameters and saves them in 3.0 specimen format file
makes plots if option selected
SYNTAX
hysteresis_magic.py [command line options]
OPTIONS
-h prints help message and quits
... | [
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hysteresis_magic.py
DESCRIPTION
calculates hystereis parameters and saves them in 3.0 specimen format file
makes plots if option selected
SYNTAX
hysteresis_magic.py [command line options]
OPTIONS
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PmagPy/PmagPy | pmagpy/find_pmag_dir.py | get_data_files_dir | def get_data_files_dir():
"""
Find directory with data_files (sys.prefix or local PmagPy/data_files)
and return the path.
"""
if 'data_files' in os.listdir(sys.prefix):
return os.path.join(sys.prefix, 'data_files')
else:
return os.path.join(get_pmag_dir(), 'data_files') | python | def get_data_files_dir():
"""
Find directory with data_files (sys.prefix or local PmagPy/data_files)
and return the path.
"""
if 'data_files' in os.listdir(sys.prefix):
return os.path.join(sys.prefix, 'data_files')
else:
return os.path.join(get_pmag_dir(), 'data_files') | [
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PmagPy/PmagPy | pmagpy/find_pmag_dir.py | get_pmag_dir | def get_pmag_dir():
"""
Returns directory in which PmagPy is installed
"""
# this is correct for py2exe (DEPRECATED)
#win_frozen = is_frozen()
#if win_frozen:
# path = os.path.abspath(unicode(sys.executable, sys.getfilesystemencoding()))
# path = os.path.split(path)[0]
# ret... | python | def get_pmag_dir():
"""
Returns directory in which PmagPy is installed
"""
# this is correct for py2exe (DEPRECATED)
#win_frozen = is_frozen()
#if win_frozen:
# path = os.path.abspath(unicode(sys.executable, sys.getfilesystemencoding()))
# path = os.path.split(path)[0]
# ret... | [
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PmagPy/PmagPy | programs/plot_magmap_basemap.py | main | def main():
"""
NAME
plot_magmap.py
DESCRIPTION
makes a color contour map of desired field model
SYNTAX
plot_magmap.py [command line options]
OPTIONS
-h prints help and quits
-f FILE specify field model file with format: l m g h
-fmt [pdf,eps,svg,... | python | def main():
"""
NAME
plot_magmap.py
DESCRIPTION
makes a color contour map of desired field model
SYNTAX
plot_magmap.py [command line options]
OPTIONS
-h prints help and quits
-f FILE specify field model file with format: l m g h
-fmt [pdf,eps,svg,... | [
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plot_magmap.py
DESCRIPTION
makes a color contour map of desired field model
SYNTAX
plot_magmap.py [command line options]
OPTIONS
-h prints help and quits
-f FILE specify field model file with format: l m g h
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PmagPy/PmagPy | programs/aniso_magic.py | main | def main():
"""
NAME
aniso_magic.py
DESCRIPTION
plots anisotropy data with either bootstrap or hext ellipses
SYNTAX
aniso_magic.py [-h] [command line options]
OPTIONS
-h plots help message and quits
-usr USER: set the user name
-f AFILE, specify spec... | python | def main():
"""
NAME
aniso_magic.py
DESCRIPTION
plots anisotropy data with either bootstrap or hext ellipses
SYNTAX
aniso_magic.py [-h] [command line options]
OPTIONS
-h plots help message and quits
-usr USER: set the user name
-f AFILE, specify spec... | [
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aniso_magic.py
DESCRIPTION
plots anisotropy data with either bootstrap or hext ellipses
SYNTAX
aniso_magic.py [-h] [command line options]
OPTIONS
-h plots help message and quits
-usr USER: set the user name
-f AFILE, specify specimens.txt formatted file... | [
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PmagPy/PmagPy | programs/aniso_magic.py | new | def new():
"""
NAME
aniso_magic.py
DESCRIPTION
plots anisotropy data with either bootstrap or hext ellipses
SYNTAX
aniso_magic.py [-h] [command line options]
OPTIONS
-h plots help message and quits
-f AFILE, specify specimens.txt formatted file for input
... | python | def new():
"""
NAME
aniso_magic.py
DESCRIPTION
plots anisotropy data with either bootstrap or hext ellipses
SYNTAX
aniso_magic.py [-h] [command line options]
OPTIONS
-h plots help message and quits
-f AFILE, specify specimens.txt formatted file for input
... | [
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aniso_magic.py
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plots anisotropy data with either bootstrap or hext ellipses
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aniso_magic.py [-h] [command line options]
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PmagPy/PmagPy | programs/scalc_magic.py | main | def main():
"""
NAME
scalc_magic.py
DESCRIPTION
calculates Sb from pmag_results files
SYNTAX
scalc_magic -h [command line options]
INPUT
takes magic formatted pmag_results (2.5) or sites (3.0) table
pmag_result_name (2.5) must start with "VGP: Site"
mu... | python | def main():
"""
NAME
scalc_magic.py
DESCRIPTION
calculates Sb from pmag_results files
SYNTAX
scalc_magic -h [command line options]
INPUT
takes magic formatted pmag_results (2.5) or sites (3.0) table
pmag_result_name (2.5) must start with "VGP: Site"
mu... | [
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scalc_magic.py
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calculates Sb from pmag_results files
SYNTAX
scalc_magic -h [command line options]
INPUT
takes magic formatted pmag_results (2.5) or sites (3.0) table
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PmagPy/PmagPy | programs/deprecated/plot_magic_keys.py | main | def main():
"""
NAME
plot_magic_keys.py
DESCRIPTION
picks out keys and makes and xy plot
SYNTAX
plot_magic_keys.py [command line options]
OPTIONS
-h prints help message and quits
-f FILE: specify input magic format file
-xkey KEY: specify key for X
... | python | def main():
"""
NAME
plot_magic_keys.py
DESCRIPTION
picks out keys and makes and xy plot
SYNTAX
plot_magic_keys.py [command line options]
OPTIONS
-h prints help message and quits
-f FILE: specify input magic format file
-xkey KEY: specify key for X
... | [
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plot_magic_keys.py
DESCRIPTION
picks out keys and makes and xy plot
SYNTAX
plot_magic_keys.py [command line options]
OPTIONS
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-f FILE: specify input magic format file
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PmagPy/PmagPy | programs/eqarea.py | main | def main():
"""
NAME
eqarea.py
DESCRIPTION
makes equal area projections from declination/inclination data
INPUT FORMAT
takes dec/inc as first two columns in space delimited file
SYNTAX
eqarea.py [options]
OPTIONS
-f FILE, specify file on command line
... | python | def main():
"""
NAME
eqarea.py
DESCRIPTION
makes equal area projections from declination/inclination data
INPUT FORMAT
takes dec/inc as first two columns in space delimited file
SYNTAX
eqarea.py [options]
OPTIONS
-f FILE, specify file on command line
... | [
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eqarea.py
DESCRIPTION
makes equal area projections from declination/inclination data
INPUT FORMAT
takes dec/inc as first two columns in space delimited file
SYNTAX
eqarea.py [options]
OPTIONS
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PmagPy/PmagPy | programs/find_ei.py | main | def main():
"""
NAME
find_EI.py
DESCRIPTION
Applies series of assumed flattening factor and "unsquishes" inclinations assuming tangent function.
Finds flattening factor that gives elongation/inclination pair consistent with TK03.
Finds bootstrap confidence bounds
SYNTAX... | python | def main():
"""
NAME
find_EI.py
DESCRIPTION
Applies series of assumed flattening factor and "unsquishes" inclinations assuming tangent function.
Finds flattening factor that gives elongation/inclination pair consistent with TK03.
Finds bootstrap confidence bounds
SYNTAX... | [
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find_EI.py
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Applies series of assumed flattening factor and "unsquishes" inclinations assuming tangent function.
Finds flattening factor that gives elongation/inclination pair consistent with TK03.
Finds bootstrap confidence bounds
SYNTAX
find_EI.py [com... | [
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PmagPy/PmagPy | programs/magic_gui2.py | MainFrame.on_change_dir_button | def on_change_dir_button(self, event):
"""
create change directory frame
"""
currentDirectory = self.WD #os.getcwd()
change_dir_dialog = wx.DirDialog(self.panel,
"Choose your working directory to create or edit a MagIC contribution:",
... | python | def on_change_dir_button(self, event):
"""
create change directory frame
"""
currentDirectory = self.WD #os.getcwd()
change_dir_dialog = wx.DirDialog(self.panel,
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PmagPy/PmagPy | programs/magic_gui2.py | MainFrame.make_grid_frame | def make_grid_frame(self, event):
"""
Create a GridFrame for data type of the button that was clicked
"""
if self.grid_frame:
print('-I- You already have a grid frame open')
pw.simple_warning("You already have a grid open")
return
try:
... | python | def make_grid_frame(self, event):
"""
Create a GridFrame for data type of the button that was clicked
"""
if self.grid_frame:
print('-I- You already have a grid frame open')
pw.simple_warning("You already have a grid open")
return
try:
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PmagPy/PmagPy | programs/magic_gui2.py | MainFrame.on_upload_file | def on_upload_file(self, event):
"""
Write all data to appropriate er_* and pmag_* files.
Then use those files to create a MagIC upload format file.
Validate the upload file.
"""
# coherence validations
wait = wx.BusyInfo('Validating data, please wait...')
... | python | def on_upload_file(self, event):
"""
Write all data to appropriate er_* and pmag_* files.
Then use those files to create a MagIC upload format file.
Validate the upload file.
"""
# coherence validations
wait = wx.BusyInfo('Validating data, please wait...')
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PmagPy/PmagPy | programs/magic_gui2.py | MagICMenu.on_quit | def on_quit(self, event):
"""
shut down application
"""
if self.parent.grid_frame:
if self.parent.grid_frame.grid.changes:
dlg = wx.MessageDialog(self,caption="Message:", message="Are you sure you want to exit the program?\nYou have a grid open with unsaved ch... | python | def on_quit(self, event):
"""
shut down application
"""
if self.parent.grid_frame:
if self.parent.grid_frame.grid.changes:
dlg = wx.MessageDialog(self,caption="Message:", message="Are you sure you want to exit the program?\nYou have a grid open with unsaved ch... | [
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PmagPy/PmagPy | programs/magic_gui2.py | MagICMenu.on_clear | def on_clear(self, event):
"""
initialize window to allow user to empty the working directory
"""
dia = pmag_menu_dialogs.ClearWD(self.parent, self.parent.WD)
clear = dia.do_clear()
if clear:
print('-I- Clear data object')
self.parent.er_magic = bu... | python | def on_clear(self, event):
"""
initialize window to allow user to empty the working directory
"""
dia = pmag_menu_dialogs.ClearWD(self.parent, self.parent.WD)
clear = dia.do_clear()
if clear:
print('-I- Clear data object')
self.parent.er_magic = bu... | [
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PmagPy/PmagPy | programs/deprecated/convert_samples.py | main | def main():
"""
NAME
convert_samples.py
DESCRIPTION
takes an er_samples or magic_measurements format file and creates an orient.txt template
SYNTAX
convert_samples.py [command line options]
OPTIONS
-f FILE: specify input file, default is er_samples.txt
... | python | def main():
"""
NAME
convert_samples.py
DESCRIPTION
takes an er_samples or magic_measurements format file and creates an orient.txt template
SYNTAX
convert_samples.py [command line options]
OPTIONS
-f FILE: specify input file, default is er_samples.txt
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convert_samples.py
DESCRIPTION
takes an er_samples or magic_measurements format file and creates an orient.txt template
SYNTAX
convert_samples.py [command line options]
OPTIONS
-f FILE: specify input file, default is er_samples.txt
-F FILE: specify output ... | [
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PmagPy/PmagPy | programs/gobing.py | main | def main():
"""
NAME
gobing.py
DESCRIPTION
calculates Bingham parameters from dec inc data
INPUT FORMAT
takes dec/inc as first two columns in space delimited file
SYNTAX
gobing.py [options]
OPTIONS
-f FILE to read from FILE
-F, specifies output f... | python | def main():
"""
NAME
gobing.py
DESCRIPTION
calculates Bingham parameters from dec inc data
INPUT FORMAT
takes dec/inc as first two columns in space delimited file
SYNTAX
gobing.py [options]
OPTIONS
-f FILE to read from FILE
-F, specifies output f... | [
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gobing.py
DESCRIPTION
calculates Bingham parameters from dec inc data
INPUT FORMAT
takes dec/inc as first two columns in space delimited file
SYNTAX
gobing.py [options]
OPTIONS
-f FILE to read from FILE
-F, specifies output file name
< filen... | [
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PmagPy/PmagPy | programs/atrm_magic.py | main | def main():
"""
NAME
atrm_magic.py
DESCRIPTION
Converts ATRM data to best-fit tensor (6 elements plus sigma)
Original program ARMcrunch written to accomodate ARM anisotropy data
collected from 6 axial directions (+X,+Y,+Z,-X,-Y,-Z) using the
off-axis remanence ... | python | def main():
"""
NAME
atrm_magic.py
DESCRIPTION
Converts ATRM data to best-fit tensor (6 elements plus sigma)
Original program ARMcrunch written to accomodate ARM anisotropy data
collected from 6 axial directions (+X,+Y,+Z,-X,-Y,-Z) using the
off-axis remanence ... | [
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atrm_magic.py
DESCRIPTION
Converts ATRM data to best-fit tensor (6 elements plus sigma)
Original program ARMcrunch written to accomodate ARM anisotropy data
collected from 6 axial directions (+X,+Y,+Z,-X,-Y,-Z) using the
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PmagPy/PmagPy | programs/conversion_scripts2/iodp_srm_magic2.py | main | def main(command_line=True, **kwargs):
"""
NAME
iodp_srm_magic.py
DESCRIPTION
converts IODP LIMS and LORE SRM archive half sample format files to magic_measurements format files
SYNTAX
iodp_srm_magic.py [command line options]
OPTIONS
-h: prints the help message an... | python | def main(command_line=True, **kwargs):
"""
NAME
iodp_srm_magic.py
DESCRIPTION
converts IODP LIMS and LORE SRM archive half sample format files to magic_measurements format files
SYNTAX
iodp_srm_magic.py [command line options]
OPTIONS
-h: prints the help message an... | [
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iodp_srm_magic.py
DESCRIPTION
converts IODP LIMS and LORE SRM archive half sample format files to magic_measurements format files
SYNTAX
iodp_srm_magic.py [command line options]
OPTIONS
-h: prints the help message and quits.
-f FILE: specify input .csv file, ... | [
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PmagPy/PmagPy | programs/agm_magic2.py | main | def main():
"""
NAME
agm_magic.py
DESCRIPTION
converts Micromag agm files to magic format
SYNTAX
agm_magic.py [-h] [command line options]
OPTIONS
-usr USER: identify user, default is "" - put in quotation marks!
-bak: this is a IRM backfield curve
... | python | def main():
"""
NAME
agm_magic.py
DESCRIPTION
converts Micromag agm files to magic format
SYNTAX
agm_magic.py [-h] [command line options]
OPTIONS
-usr USER: identify user, default is "" - put in quotation marks!
-bak: this is a IRM backfield curve
... | [
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agm_magic.py
DESCRIPTION
converts Micromag agm files to magic format
SYNTAX
agm_magic.py [-h] [command line options]
OPTIONS
-usr USER: identify user, default is "" - put in quotation marks!
-bak: this is a IRM backfield curve
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PmagPy/PmagPy | programs/di_vgp.py | main | def main():
"""
NAME
di_vgp.py
DESCRIPTION
converts declination/inclination to virtual geomagnetic pole
SYNTAX
di_vgp.py [-h] [options]
OPTIONS
-h prints help message and quits
-i interactive data entry
-f FILE to specify intput file
-... | python | def main():
"""
NAME
di_vgp.py
DESCRIPTION
converts declination/inclination to virtual geomagnetic pole
SYNTAX
di_vgp.py [-h] [options]
OPTIONS
-h prints help message and quits
-i interactive data entry
-f FILE to specify intput file
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di_vgp.py
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converts declination/inclination to virtual geomagnetic pole
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di_vgp.py [-h] [options]
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PmagPy/PmagPy | dialogs/pmag_gui_dialogs.py | convert_HUJI_files_to_MagIC.on_okButton | def on_okButton(self, event):
"""
grab user input values, format them, and run huji_magic.py with the appropriate flags
"""
os.chdir(self.WD)
options = {}
HUJI_file = self.bSizer0.return_value()
if not HUJI_file:
pw.simple_warning("You must select a HU... | python | def on_okButton(self, event):
"""
grab user input values, format them, and run huji_magic.py with the appropriate flags
"""
os.chdir(self.WD)
options = {}
HUJI_file = self.bSizer0.return_value()
if not HUJI_file:
pw.simple_warning("You must select a HU... | [
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PmagPy/PmagPy | dialogs/pmag_gui_dialogs.py | OrientFrameGrid3.create_sheet | def create_sheet(self):
'''
create an editable grid showing demag_orient.txt
'''
#--------------------------------
# orient.txt supports many other headers
# but we will only initialize with
# the essential headers for
# sample orientation and headers pres... | python | def create_sheet(self):
'''
create an editable grid showing demag_orient.txt
'''
#--------------------------------
# orient.txt supports many other headers
# but we will only initialize with
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# sample orientation and headers pres... | [
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PmagPy/PmagPy | dialogs/pmag_gui_dialogs.py | OrientFrameGrid3.on_m_open_file | def on_m_open_file(self,event):
'''
open orient.txt
read the data
display the data from the file in a new grid
'''
dlg = wx.FileDialog(
self, message="choose orient file",
defaultDir=self.WD,
defaultFile="",
style=wx.FD_OPEN... | python | def on_m_open_file(self,event):
'''
open orient.txt
read the data
display the data from the file in a new grid
'''
dlg = wx.FileDialog(
self, message="choose orient file",
defaultDir=self.WD,
defaultFile="",
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PmagPy/PmagPy | dialogs/pmag_gui_dialogs.py | OrientFrameGrid.add_extra_headers | def add_extra_headers(self, sample_names):
"""
If there are samples, add any additional keys they might use
to supplement the default headers.
Return the headers headers for adding, with the format:
[(header_name, header_display_name), ....]
"""
if not sample_name... | python | def add_extra_headers(self, sample_names):
"""
If there are samples, add any additional keys they might use
to supplement the default headers.
Return the headers headers for adding, with the format:
[(header_name, header_display_name), ....]
"""
if not sample_name... | [
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PmagPy/PmagPy | dialogs/pmag_gui_dialogs.py | OrientFrameGrid.on_m_open_file | def on_m_open_file(self,event):
'''
open orient.txt
read the data
display the data from the file in a new grid
'''
dlg = wx.FileDialog(
self, message="choose orient file",
defaultDir=self.WD,
defaultFile="",
style=wx.FD_OPEN... | python | def on_m_open_file(self,event):
'''
open orient.txt
read the data
display the data from the file in a new grid
'''
dlg = wx.FileDialog(
self, message="choose orient file",
defaultDir=self.WD,
defaultFile="",
style=wx.FD_OPEN... | [
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PmagPy/PmagPy | dialogs/pmag_gui_dialogs.py | OrientFrameGrid.on_m_save_file | def on_m_save_file(self,event):
'''
save demag_orient.txt
(only the columns that appear on the grid frame)
'''
fout = open(os.path.join(self.WD, "demag_orient.txt"), 'w')
STR = "tab\tdemag_orient\n"
fout.write(STR)
headers = [header[0] for header in self.... | python | def on_m_save_file(self,event):
'''
save demag_orient.txt
(only the columns that appear on the grid frame)
'''
fout = open(os.path.join(self.WD, "demag_orient.txt"), 'w')
STR = "tab\tdemag_orient\n"
fout.write(STR)
headers = [header[0] for header in self.... | [
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