| # Monitoring Progression of Scleroderma | |
| --- | |
| ## Project Description | |
| This is a website for visualising datasets to study protein expression in Scleroderma patients. The website is able to | |
| generate the following plots: | |
| - Correlation Plot | |
| - Boxplot | |
| - UMAP plot | |
| - Volcano plot | |
| - Violin plot | |
| --- | |
| ## Table of Contents | |
| - [Introduction](#introduction) | |
| - [Features](#features) | |
| - [Installation](#installation) | |
| - [Usage](#usage) | |
| - [Contributing](#contributing) | |
| - [License](#license) | |
| - [Contact/Support](#contact) | |
| --- | |
| ## Introduction | |
| Scleroderma is an autoimmune disease that can cause thickened areas of skin and connective tissues. To gain a deeper | |
| understanding of this condition, analysing the expression of different proteins observed in Scleroderma patients is | |
| highly beneficial. | |
| This website utilizes a dataset to generate 4 graphs, enabling researchers to analyse results while requiring | |
| minimal bioinformatics expertise. | |
| --- | |
| ## Features | |
| ### Selecting Protein | |
| Users can search for proteins using multiple naming conventions including: | |
| - Protein Name | |
| - Full Protein Name | |
| - Entrez Gene ID | |
| - Entrez Gene Symbol | |
| Alternatively, users can utilize the volcano plot on the main page to select a protein by hovering over and clicking | |
| on the plot. | |
| ### Volcano Plot | |
| ### Correlation Plot | |
| ### Box Plot | |
| ### UMAP Plot | |
| ### Violin Plot | |
| --- | |
| ## Installation | |
| 1. Clone the repository: | |
| ```bash | |
| git clone https://github.com/ainiimura21/name1.git | |
| ``` | |
| 2. Install dependencies: | |
| ```bash | |
| pip install numpy pandas matplotlib seaborn streamlit scanpy | |
| ``` | |
| ## Usage | |
| To run the project, use the following command: | |
| ```bash | |
| streamlit run app/main.py | |
| ``` | |
| ## Contributing | |
| 1. Fork the repository. | |
| 2. Create a new branch: `git checkout -b feature-name`. | |
| 3. Make changes. | |
| 4. Push your branch: `git push origin feature-name`. | |
| 5. Create a pull request. | |