label int64 0 1 | func1 stringlengths 173 53.1k | func2 stringlengths 173 53.1k | id int64 0 901k |
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0 | public void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException { PrintWriter out = response.getWriter(); response.setContentType("text/html"); HttpSession session = request.getSession(); String session_id = session.getId(); File session_fileDir = new File(destinationDir + java.io.File.separator + session_id); session_fileDir.mkdir(); DiskFileItemFactory fileItemFactory = new DiskFileItemFactory(); fileItemFactory.setSizeThreshold(1 * 1024 * 1024); fileItemFactory.setRepository(tmpDir); ServletFileUpload uploadHandler = new ServletFileUpload(fileItemFactory); String pathToFile = new String(); try { List items = uploadHandler.parseRequest(request); Iterator itr = items.iterator(); while (itr.hasNext()) { FileItem item = (FileItem) itr.next(); if (item.isFormField()) { ; } else { pathToFile = getServletContext().getRealPath("/") + "files" + java.io.File.separator + session_id; File file = new File(pathToFile + java.io.File.separator + item.getName()); item.write(file); getContents(file, pathToFile); ComtorStandAlone.setMode(Mode.CLOUD); Comtor.start(pathToFile); } } try { File reportFile = new File(pathToFile + java.io.File.separator + "comtorReport.txt"); String reportURLString = AWSServices.storeReportS3(reportFile, session_id).toString(); if (reportURLString.startsWith("https")) reportURLString = reportURLString.replaceFirst("https", "http"); String requestURL = request.getRequestURL().toString(); String url = requestURL.substring(0, requestURL.lastIndexOf("/")); out.println("<html><head/><body>"); out.println("<a href=\"" + url + "\">Return to home</a> "); out.println("<a href=\"" + reportURLString + "\">Report URL</a><br/><hr/>"); Scanner scan = new Scanner(reportFile); out.println("<pre>"); while (scan.hasNextLine()) out.println(scan.nextLine()); out.println("</pre><hr/>"); out.println("<a href=\"" + url + "\">Return to home</a> "); out.println("<a href=\"" + reportURLString + "\">Report URL</a><br/>"); out.println("</body></html>"); } catch (Exception ex) { System.err.println(ex); } } catch (FileUploadException ex) { System.err.println("Error encountered while parsing the request" + ex); } catch (Exception ex) { System.err.println("Error encountered while uploading file" + ex); } } | public static final String encryptMD5(String decrypted) { try { MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(decrypted.getBytes()); byte hash[] = md5.digest(); md5.reset(); return hashToHex(hash); } catch (NoSuchAlgorithmException _ex) { return null; } } | 17,100 |
1 | private static byte[] tryLoadFile(String path) throws IOException { InputStream in = new FileInputStream(path); ByteArrayOutputStream out = new ByteArrayOutputStream(); IOUtils.copy(in, out); in.close(); out.close(); return out.toByteArray(); } | private void dumpFile(File repository, File copy) { try { if (copy.exists() && !copy.delete()) { throw new RuntimeException("can't delete copy: " + copy); } printFile("Real Archive File", repository); new ZipArchive(repository.getPath()); IOUtils.copyFiles(repository, copy); printFile("Copy Archive File", copy); new ZipArchive(copy.getPath()); } catch (IOException e) { e.printStackTrace(); } } | 17,101 |
0 | public synchronized String encrypt(String plaintext) { MessageDigest md = null; String hash = null; try { md = MessageDigest.getInstance("SHA"); md.update(plaintext.getBytes("UTF-8")); byte raw[] = md.digest(); hash = (new BASE64Encoder()).encode(raw); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } catch (UnsupportedEncodingException e) { e.printStackTrace(); } return hash; } | public static void upper() throws Exception { File input = new File("dateiname"); PostMethod post = new PostMethod("url"); post.setRequestBody(new FileInputStream(input)); if (input.length() < Integer.MAX_VALUE) post.setRequestContentLength((int) input.length()); else post.setRequestContentLength(EntityEnclosingMethod.CONTENT_LENGTH_CHUNKED); post.setRequestHeader("Content-type", "text/xml; charset=ISO-8859�1"); HttpClient httpclient = new HttpClient(); httpclient.executeMethod(post); post.releaseConnection(); URL url = new URL("https://www.amazon.de/"); URLConnection conn = url.openConnection(); BufferedReader rd = new BufferedReader(new InputStreamReader(conn.getInputStream())); String line; while ((line = rd.readLine()) != null) { System.out.println(line); } rd.close(); } | 17,102 |
1 | public static void copy(File source, File dest) throws IOException { FileChannel in = null, out = null; try { in = new FileInputStream(source).getChannel(); out = new FileOutputStream(dest).getChannel(); long size = in.size(); MappedByteBuffer buf = in.map(FileChannel.MapMode.READ_ONLY, 0, size); out.write(buf); } finally { if (in != null) in.close(); if (out != null) out.close(); } } | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 17,103 |
1 | private void moveFile(File orig, File target) throws IOException { byte buffer[] = new byte[1000]; int bread = 0; FileInputStream fis = new FileInputStream(orig); FileOutputStream fos = new FileOutputStream(target); while (bread != -1) { bread = fis.read(buffer); if (bread != -1) fos.write(buffer, 0, bread); } fis.close(); fos.close(); orig.delete(); } | public boolean copier(String source, String nomFichierSource, java.io.File destination) { boolean resultat = false; OutputStream tmpOut; try { tmpOut = new BufferedOutputStream(new FileOutputStream(nomFichierSource + "001.tmp")); InputStream is = getClass().getResourceAsStream(source + nomFichierSource); int i; while ((i = is.read()) != -1) tmpOut.write(i); tmpOut.close(); is.close(); } catch (IOException ex) { ex.printStackTrace(); } FileChannel in = null; FileChannel out = null; try { in = new FileInputStream(new File(nomFichierSource + "001.tmp")).getChannel(); out = new FileOutputStream(destination).getChannel(); in.transferTo(0, in.size(), out); resultat = true; } catch (java.io.FileNotFoundException f) { } catch (java.io.IOException e) { } finally { if (in != null) { try { in.close(); } catch (IOException e) { } } if (out != null) { try { out.close(); } catch (IOException e) { } } } new File(nomFichierSource + "001.tmp").delete(); return (resultat); } | 17,104 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | private void copyFileNFS(String sSource, String sTarget) throws Exception { FileInputStream fis = new FileInputStream(sSource); FileOutputStream fos = new FileOutputStream(sTarget); BufferedInputStream bis = new BufferedInputStream(fis); BufferedOutputStream bos = new BufferedOutputStream(fos); byte[] buf = new byte[2048]; int i = 0; while ((i = bis.read(buf)) != -1) bos.write(buf, 0, i); bis.close(); bos.close(); fis.close(); fos.close(); } | 17,105 |
0 | public static String get_content(String _url) throws Exception { URL url = new URL(_url); BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream())); String inputLine; String content = new String(); while ((inputLine = in.readLine()) != null) { content += inputLine; } in.close(); return content; } | public boolean doUpload(int count) { String objFileName = Long.toString(new java.util.Date().getTime()) + Integer.toString(count); try { this.objectFileName[count] = objFileName + "_bak." + this.sourceFileExt[count]; File objFile = new File(this.contextPath + "/" + this.savePath, this.objectFileName[count]); if (objFile.exists()) { this.doUpload(count); } else { objFile.createNewFile(); } FileOutputStream fos = new FileOutputStream(objFile); BufferedOutputStream bos = new BufferedOutputStream(fos); int readLength = 0; int offset = 0; String str = ""; long readSize = 0L; while ((readLength = this.inStream.readLine(this.b, 0, this.b.length)) != -1) { str = new String(this.b, 0, readLength); if (str.indexOf("Content-Type:") != -1) { break; } } this.inStream.readLine(this.b, 0, this.b.length); while ((readLength = this.inStream.readLine(this.b, 0, b.length)) != -1) { str = new String(this.b, 0, readLength); if (this.b[0] == 45 && this.b[1] == 45 && this.b[2] == 45 && this.b[3] == 45 && this.b[4] == 45) { break; } bos.write(this.b, 0, readLength); readSize += readLength; if (readSize > this.size) { this.fileMessage[count] = "�ϴ��ļ������ļ���С�������ƣ�"; this.ok = false; break; } } if (this.ok) { bos.flush(); bos.close(); int fileLength = (int) (objFile.length()); byte[] bb = new byte[fileLength - 2]; FileInputStream fis = new FileInputStream(objFile); BufferedInputStream bis = new BufferedInputStream(fis); bis.read(bb, 0, (fileLength - 2)); fis.close(); bis.close(); this.objectFileName[count] = objFileName + "." + this.sourceFileExt[count]; File ok_file = new File(this.contextPath + "/" + this.savePath, this.objectFileName[count]); ok_file.createNewFile(); BufferedOutputStream bos_ok = new BufferedOutputStream(new FileOutputStream(ok_file)); bos_ok.write(bb); bos_ok.close(); objFile.delete(); this.fileMessage[count] = "OK"; return true; } else { bos.flush(); bos.close(); File delFile = new File(this.contextPath + "/" + this.savePath, this.objectFileName[count]); delFile.delete(); this.objectFileName[count] = "none"; return false; } } catch (Exception e) { this.objectFileName[count] = "none"; this.fileMessage[count] = e.toString(); return false; } } | 17,106 |
1 | public void convert(File file, String fromEncoding, String toEncoding) throws IOException { InputStream in = new FileInputStream(file); StringWriter cache = new StringWriter(); Reader reader = new InputStreamReader(in, fromEncoding); char[] buffer = new char[128]; int read; while ((read = reader.read(buffer)) > -1) { cache.write(buffer, 0, read); } reader.close(); in.close(); Log.warn(this, "read from file " + file + " (" + fromEncoding + "):" + cache); OutputStream out = new FileOutputStream(file); OutputStreamWriter writer = new OutputStreamWriter(out, toEncoding); writer.write(cache.toString()); cache.close(); writer.close(); out.close(); } | File exportCommunityData(Community community) throws CommunityNotActiveException, FileNotFoundException, IOException, CommunityNotFoundException { try { String communityId = community.getId(); if (!community.isActive()) { log.error("The community with id " + communityId + " is inactive"); throw new CommunityNotActiveException("The community with id " + communityId + " is inactive"); } new File(CommunityManagerImpl.EXPORTED_COMMUNITIES_PATH).mkdirs(); String communityName = community.getName(); String communityType = community.getType(); String communityTitle = I18NUtils.localize(community.getTitle()); File zipOutFilename; if (community.isPersonalCommunity()) { zipOutFilename = new File(CommunityManagerImpl.EXPORTED_COMMUNITIES_PATH + communityName + ".zip"); } else { zipOutFilename = new File(CommunityManagerImpl.EXPORTED_COMMUNITIES_PATH + MANUAL_EXPORTED_COMMUNITY_PREFIX + communityTitle + ".zip"); } ZipOutputStream out = new ZipOutputStream(new FileOutputStream(zipOutFilename)); File file = File.createTempFile("exported-community", null); TemporaryFilesHandler.register(null, file); FileOutputStream fos = new FileOutputStream(file); String contentPath = JCRUtil.getNodeById(communityId).getPath(); JCRUtil.currentSession().exportSystemView(contentPath, fos, false, false); fos.close(); File propertiesFile = File.createTempFile("exported-community-properties", null); TemporaryFilesHandler.register(null, propertiesFile); FileOutputStream fosProperties = new FileOutputStream(propertiesFile); fosProperties.write(("communityId=" + communityId).getBytes()); fosProperties.write(";".getBytes()); fosProperties.write(("externalId=" + community.getExternalId()).getBytes()); fosProperties.write(";".getBytes()); fosProperties.write(("title=" + communityTitle).getBytes()); fosProperties.write(";".getBytes()); fosProperties.write(("communityType=" + communityType).getBytes()); fosProperties.write(";".getBytes()); fosProperties.write(("communityName=" + communityName).getBytes()); fosProperties.close(); FileInputStream finProperties = new FileInputStream(propertiesFile); byte[] bufferProperties = new byte[4096]; out.putNextEntry(new ZipEntry("properties")); int readProperties = 0; while ((readProperties = finProperties.read(bufferProperties)) > 0) { out.write(bufferProperties, 0, readProperties); } finProperties.close(); FileInputStream fin = new FileInputStream(file); byte[] buffer = new byte[4096]; out.putNextEntry(new ZipEntry("xmlData")); int read = 0; while ((read = fin.read(buffer)) > 0) { out.write(buffer, 0, read); } fin.close(); out.close(); community.setActive(Boolean.FALSE); communityPersister.saveCommunity(community); Collection<Community> duplicatedPersonalCommunities = communityPersister.searchCommunitiesByName(communityName); if (CommunityManager.PERSONAL_COMMUNITY_TYPE.equals(communityType)) { for (Community currentCommunity : duplicatedPersonalCommunities) { if (currentCommunity.isActive()) { currentCommunity.setActive(Boolean.FALSE); communityPersister.saveCommunity(currentCommunity); } } } return zipOutFilename; } catch (RepositoryException e) { log.error("Error getting community with id " + community.getId()); throw new GroupwareRuntimeException("Error getting community with id " + community.getId(), e.getCause()); } } | 17,107 |
1 | boolean copyFileStructure(File oldFile, File newFile) { if (oldFile == null || newFile == null) return false; File searchFile = newFile; do { if (oldFile.equals(searchFile)) return false; searchFile = searchFile.getParentFile(); } while (searchFile != null); if (oldFile.isDirectory()) { if (progressDialog != null) { progressDialog.setDetailFile(oldFile, ProgressDialog.COPY); } if (simulateOnly) { } else { if (!newFile.mkdirs()) return false; } File[] subFiles = oldFile.listFiles(); if (subFiles != null) { if (progressDialog != null) { progressDialog.addWorkUnits(subFiles.length); } for (int i = 0; i < subFiles.length; i++) { File oldSubFile = subFiles[i]; File newSubFile = new File(newFile, oldSubFile.getName()); if (!copyFileStructure(oldSubFile, newSubFile)) return false; if (progressDialog != null) { progressDialog.addProgress(1); if (progressDialog.isCancelled()) return false; } } } } else { if (simulateOnly) { } else { FileReader in = null; FileWriter out = null; try { in = new FileReader(oldFile); out = new FileWriter(newFile); int count; while ((count = in.read()) != -1) out.write(count); } catch (FileNotFoundException e) { return false; } catch (IOException e) { return false; } finally { try { if (in != null) in.close(); if (out != null) out.close(); } catch (IOException e) { return false; } } } } return true; } | @Override protected void copyContent(String filename) throws IOException { InputStream in = null; try { in = LOADER.getResourceAsStream(RES_PKG + filename); ByteArrayOutputStream out = new ByteArrayOutputStream(); IOUtils.copy(in, out); setResponseData(out.toByteArray()); } finally { if (in != null) { in.close(); } } } | 17,108 |
0 | public void bspMain(BSP bsp, Serializable arg) throws AbortedException { if (!(arg instanceof String[])) { bsp.abort(new RuntimeException("String[] as arguments expected")); } String[] args = (String[]) arg; long t1 = 0L, t2; try { if (bsp != null) bsp.printStdOut(bsp.getHostname()); else System.out.println(InetAddress.getLocalHost().getCanonicalHostName()); } catch (Exception e) { if (bsp != null) bsp.printStdOut("exception: " + e); else System.out.println("exception: " + e); } Formula formula = null; if (bsp == null || bsp.getProcessId() == 0) { try { InputStream src; String input; if (args.length > 0) input = args[0]; else input = "sat/uuf175-03.cnf"; if (bsp != null) bsp.printStdOut("using formula definition: " + input); else System.out.println("using formula definition: " + input); if (bsp != null) { bsp.printStdOut("trying to read formula from class file server of the job owner's peer"); src = bsp.getResourceAsStream(input); } else { System.out.println("trying to read formula from http://www.upb.de/fachbereich/AG/agmadh/WWW/bono/" + input); URL url = new URL("http", "www.upb.de", -1, "/fachbereich/AG/agmadh/WWW/bono/" + input, null); src = url.openStream(); } formula = new Formula(src, bsp); } catch (Exception e) { if (bsp != null) { bsp.printStdOut("cannot load formula: " + e); bsp.abort(e); } else { System.out.println("cannot load formula: " + e); System.exit(1); } } formula.print(bsp); } if (bsp != null) { bsp.sync(); if (bsp.getProcessId() == 0) t1 = bsp.getTime(); Formula.parallelSolve(formula, bsp); bsp.sync(); if (bsp.getProcessId() == 0) { t2 = bsp.getTime(); bsp.printStdOut("consumed time: " + ((t2 - t1) / 1000) + "s"); } } else formula.solve(bsp); if (bsp == null || bsp.getProcessId() == 0) { if (formula.isSatisfiable()) { if (bsp != null) bsp.printStdOut("satisfiable"); else System.out.println("satisfiable"); } else { if (bsp != null) bsp.printStdOut("not satisfiable"); else System.out.println("not satisfiable"); } formula.printVariables(bsp); } } | public static String getHashedStringMD5(String value) throws java.security.NoSuchAlgorithmException { java.security.MessageDigest d = java.security.MessageDigest.getInstance("MD5"); d.reset(); d.update(value.getBytes()); byte[] buf = d.digest(); return new String(buf); } | 17,109 |
1 | private void copyJdbcDriverToWL(final WLPropertyPage page) { final File url = new File(page.getDomainDirectory()); final File lib = new File(url, "lib"); final File mysqlLibrary = new File(lib, NexOpenUIActivator.getDefault().getMySQLDriver()); if (!mysqlLibrary.exists()) { InputStream driver = null; FileOutputStream fos = null; try { driver = AppServerPropertyPage.toInputStream(new Path("jdbc/" + NexOpenUIActivator.getDefault().getMySQLDriver())); fos = new FileOutputStream(mysqlLibrary); IOUtils.copy(driver, fos); } catch (final IOException e) { Logger.log(Logger.ERROR, "Could not copy the MySQL Driver jar file to Bea WL", e); final Status status = new Status(Status.ERROR, NexOpenUIActivator.PLUGIN_ID, Status.ERROR, "Could not copy the MySQL Driver jar file to Bea WL", e); ErrorDialog.openError(page.getShell(), "Bea WebLogic MSQL support", "Could not copy the MySQL Driver jar file to Bea WL", status); } finally { try { if (driver != null) { driver.close(); driver = null; } if (fos != null) { fos.flush(); fos.close(); fos = null; } } catch (IOException e) { } } } } | public void testCreateNewXMLFile() throws InvalidNodeTypeDefException, ParseException, Exception { JCRNodeSource emptySource = loadTestSource(); assertEquals(false, emptySource.exists()); OutputStream sourceOut = emptySource.getOutputStream(); assertNotNull(sourceOut); InputStream contentIn = getClass().getResourceAsStream(CONTENT_FILE); try { IOUtils.copy(contentIn, sourceOut); sourceOut.flush(); } finally { sourceOut.close(); contentIn.close(); } InputStream expected = getClass().getResourceAsStream(CONTENT_FILE); JCRNodeSource persistentSource = loadTestSource(); assertEquals(true, persistentSource.exists()); InputStream actual = persistentSource.getInputStream(); try { assertTrue(isXmlEqual(expected, actual)); } finally { expected.close(); actual.close(); } JCRNodeSource tmpSrc = (JCRNodeSource) resolveSource(BASE_URL + "users/alexander.saar"); persistentSource.delete(); tmpSrc.delete(); } | 17,110 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { if (System.getProperty("os.name").toUpperCase().indexOf("WIN") != -1) { int maxCount = (64 * 1024 * 1024) - (32 * 1024); long size = inChannel.size(); long position = 0; while (position < size) { position += inChannel.transferTo(position, maxCount, outChannel); } } else { inChannel.transferTo(0, inChannel.size(), outChannel); } } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | 17,111 |
0 | private static Map<String, File> loadServiceCache() { ArrayList<String> preferredOrder = new ArrayList<String>(); HashMap<String, File> serviceFileMapping = new HashMap<String, File>(); File file = new File(IsqlToolkit.getBaseDirectory(), CACHE_FILE); if (!file.exists()) { return serviceFileMapping; } if (file.canRead()) { FileReader fileReader = null; try { fileReader = new FileReader(file); BufferedReader lineReader = new BufferedReader(fileReader); while (lineReader.ready()) { String data = lineReader.readLine(); if (data.charAt(0) == '#') { continue; } int idx0 = 0; int idx1 = data.indexOf(SERVICE_FIELD_SEPERATOR); String name = StringUtilities.decodeASCII(data.substring(idx0, idx1)); String uri = StringUtilities.decodeASCII(data.substring(idx1 + 1)); if (name.equalsIgnoreCase(KEY_SERVICE_LIST)) { StringTokenizer st = new StringTokenizer(uri, SERVICE_SEPERATOR); while (st.hasMoreTokens()) { String serviceName = st.nextToken(); preferredOrder.add(serviceName.toLowerCase().trim()); } continue; } try { URL url = new URL(uri); File serviceFile = new File(url.getFile()); if (serviceFile.isDirectory()) { logger.warn(messages.format("compatability_kit.service_mapped_to_directory", name, uri)); continue; } else if (!serviceFile.canRead()) { logger.warn(messages.format("compatability_kit.service_not_readable", name, uri)); continue; } else if (!serviceFile.exists()) { logger.warn(messages.format("compatability_kit.service_does_not_exist", name, uri)); continue; } String bindName = name.toLowerCase().trim(); InputStream inputStream = null; try { inputStream = url.openStream(); InputSource inputSource = new InputSource(inputStream); bindName = ServiceDigester.parseService(inputSource, IsqlToolkit.getSharedEntityResolver()).getName(); } catch (Exception error) { continue; } if (serviceFileMapping.put(bindName, serviceFile) != null) { logger.warn(messages.format("compatability_kit.service_duplicate_name_error", name, uri)); } } catch (MalformedURLException e) { logger.error(messages.format("compatability_kit.service_uri_error", name, uri), e); } } } catch (IOException ioe) { logger.error("compatability_kit.service_generic_error", ioe); } finally { if (fileReader != null) { try { fileReader.close(); } catch (Throwable ignored) { } } } } return serviceFileMapping; } | protected PersistenceUnitInfo getPersistenceUnitInfo() { if (this.persistenceUnitInfo == null) { this.persistenceUnitInfo = new PersistenceUnitInfo() { private List<ClassTransformer> transformers; private List<String> managedClasses; private List<String> mappingFileNames; private ClassLoader classLoader; public String getPersistenceUnitName() { return "jomc-standalone"; } public String getPersistenceProviderClassName() { return getPersistenceProvider().getClass().getName(); } public PersistenceUnitTransactionType getTransactionType() { return PersistenceUnitTransactionType.JTA; } public DataSource getJtaDataSource() { try { return (DataSource) getContext().lookup(getEnvironment().getJtaDataSourceJndiName()); } catch (final NamingException e) { getLogger().fatal(e); throw new RuntimeException(e); } } public DataSource getNonJtaDataSource() { return null; } public List<String> getMappingFileNames() { try { if (this.mappingFileNames == null) { this.mappingFileNames = new LinkedList<String>(); final DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance(); factory.setNamespaceAware(true); factory.setValidating(false); final DocumentBuilder documentBuilder = factory.newDocumentBuilder(); for (final Enumeration<URL> e = this.getNewTempClassLoader().getResources("META-INF/persistence.xml"); e.hasMoreElements(); ) { final URL url = e.nextElement(); final InputStream in = url.openStream(); final Document doc = documentBuilder.parse(in); in.close(); final NodeList persistenceUnits = doc.getElementsByTagNameNS(PERSISTENCE_NS, "persistence-unit"); for (int i = persistenceUnits.getLength() - 1; i >= 0; i--) { final Element persistenceUnit = (Element) persistenceUnits.item(i); final NodeList mappingFiles = persistenceUnit.getElementsByTagNameNS(PERSISTENCE_NS, "mapping-file"); for (int j = mappingFiles.getLength() - 1; j >= 0; j--) { final Element mappingFile = (Element) mappingFiles.item(j); this.mappingFileNames.add(mappingFile.getFirstChild().getNodeValue()); } } } } return this.mappingFileNames; } catch (final SAXException e) { getLogger().fatal(e); throw new RuntimeException(e); } catch (final IOException e) { getLogger().fatal(e); throw new RuntimeException(e); } catch (final ParserConfigurationException e) { getLogger().fatal(e); throw new RuntimeException(e); } } public List<URL> getJarFileUrls() { try { final List<URL> jarFileUrls = new LinkedList<URL>(); for (final Enumeration<URL> unitUrls = this.getClassLoader().getResources("META-INF/persistence.xml"); unitUrls.hasMoreElements(); ) { final URL unitUrl = unitUrls.nextElement(); final String externalForm = unitUrl.toExternalForm(); final String jarUrl = externalForm.substring(0, externalForm.indexOf("META-INF")); jarFileUrls.add(new URL(jarUrl)); } return jarFileUrls; } catch (final IOException e) { getLogger().fatal(e); throw new RuntimeException(e.getMessage(), e); } } public URL getPersistenceUnitRootUrl() { return getEnvironment().getJpaRootUrl(); } public List<String> getManagedClassNames() { try { if (this.managedClasses == null) { this.managedClasses = new LinkedList<String>(); final DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance(); factory.setNamespaceAware(true); factory.setValidating(false); final DocumentBuilder documentBuilder = factory.newDocumentBuilder(); for (final Enumeration<URL> e = this.getNewTempClassLoader().getResources("META-INF/persistence.xml"); e.hasMoreElements(); ) { final URL url = e.nextElement(); final InputStream in = url.openStream(); final Document doc = documentBuilder.parse(in); in.close(); final NodeList persistenceUnits = doc.getElementsByTagNameNS(PERSISTENCE_NS, "persistence-unit"); for (int i = persistenceUnits.getLength() - 1; i >= 0; i--) { final Element persistenceUnit = (Element) persistenceUnits.item(i); final NodeList classes = persistenceUnit.getElementsByTagNameNS(PERSISTENCE_NS, "class"); for (int j = classes.getLength() - 1; j >= 0; j--) { final Element clazz = (Element) classes.item(j); this.managedClasses.add(clazz.getFirstChild().getNodeValue()); } } } } return this.managedClasses; } catch (final SAXException e) { getLogger().fatal(e); throw new RuntimeException(e); } catch (final IOException e) { getLogger().fatal(e); throw new RuntimeException(e); } catch (final ParserConfigurationException e) { getLogger().fatal(e); throw new RuntimeException(e); } } public boolean excludeUnlistedClasses() { return false; } public Properties getProperties() { return getEnvironment().getProperties(); } public ClassLoader getClassLoader() { if (this.classLoader == null) { this.classLoader = this.getClass().getClassLoader(); if (this.classLoader == null) { this.classLoader = ClassLoader.getSystemClassLoader(); } this.classLoader = new URLClassLoader(new URL[] { getEnvironment().getJpaRootUrl() }, this.classLoader); } return this.classLoader; } public void addTransformer(final ClassTransformer transformer) { if (this.transformers == null) { this.transformers = new LinkedList<ClassTransformer>(); } this.transformers.add(transformer); } public ClassLoader getNewTempClassLoader() { final List<URL> jarFileUrls = this.getJarFileUrls(); jarFileUrls.add(getEnvironment().getJpaRootUrl()); return new URLClassLoader(jarFileUrls.toArray(new URL[jarFileUrls.size()])); } }; } return this.persistenceUnitInfo; } | 17,112 |
0 | public static void copyFile(File source, File dest) throws IOException { FileChannel in = null, out = null; try { in = new FileInputStream(source).getChannel(); out = new FileOutputStream(dest).getChannel(); long size = in.size(); MappedByteBuffer buf = in.map(FileChannel.MapMode.READ_ONLY, 0, size); out.write(buf); } finally { if (in != null) in.close(); if (out != null) out.close(); } } | public void testHttpsPersistentConnection() throws Throwable { setUpStoreProperties(); try { SSLContext ctx = getContext(); ServerSocket ss = ctx.getServerSocketFactory().createServerSocket(0); TestHostnameVerifier hnv = new TestHostnameVerifier(); HttpsURLConnection.setDefaultHostnameVerifier(hnv); URL url = new URL("https://localhost:" + ss.getLocalPort()); HttpsURLConnection connection = (HttpsURLConnection) url.openConnection(); SSLSocket peerSocket = (SSLSocket) doPersistentInteraction(connection, ss); checkConnectionStateParameters(connection, peerSocket); connection.connect(); } finally { tearDownStoreProperties(); } } | 17,113 |
0 | public static void BubbleSortFloat2(float[] num) { int last_exchange; int right_border = num.length - 1; do { last_exchange = 0; for (int j = 0; j < num.length - 1; j++) { if (num[j] > num[j + 1]) { float temp = num[j]; num[j] = num[j + 1]; num[j + 1] = temp; last_exchange = j; } } right_border = last_exchange; } while (right_border > 0); } | public void postData(Reader data, Writer output) { HttpURLConnection urlc = null; try { urlc = (HttpURLConnection) solrUrl.openConnection(); try { urlc.setRequestMethod("POST"); } catch (ProtocolException e) { throw new PostException("Shouldn't happen: HttpURLConnection doesn't support POST??", e); } urlc.setDoOutput(true); urlc.setDoInput(true); urlc.setUseCaches(false); urlc.setAllowUserInteraction(false); urlc.setRequestProperty("Content-type", "text/xml; charset=" + POST_ENCODING); OutputStream out = urlc.getOutputStream(); try { Writer writer = new OutputStreamWriter(out, POST_ENCODING); pipe(data, writer); writer.close(); } catch (IOException e) { throw new PostException("IOException while posting data", e); } finally { if (out != null) out.close(); } InputStream in = urlc.getInputStream(); try { Reader reader = new InputStreamReader(in); pipe(reader, output); reader.close(); } catch (IOException e) { throw new PostException("IOException while reading response", e); } finally { if (in != null) in.close(); } } catch (IOException e) { try { fatal("Solr returned an error: " + urlc.getResponseMessage()); } catch (IOException f) { } fatal("Connection error (is Solr running at " + solrUrl + " ?): " + e); } finally { if (urlc != null) urlc.disconnect(); } } | 17,114 |
0 | @Override public CasAssembly build() { try { prepareForBuild(); File casWorkingDirectory = casFile.getParentFile(); DefaultCasFileReadIndexToContigLookup read2contigMap = new DefaultCasFileReadIndexToContigLookup(); AbstractDefaultCasFileLookup readIdLookup = new DefaultReadCasFileLookup(casWorkingDirectory); CasParser.parseOnlyMetaData(casFile, MultipleWrapper.createMultipleWrapper(CasFileVisitor.class, read2contigMap, readIdLookup)); ReadWriteDirectoryFileServer consedOut = DirectoryFileServer.createReadWriteDirectoryFileServer(commandLine.getOptionValue("o")); long startTime = DateTimeUtils.currentTimeMillis(); int numberOfCasContigs = read2contigMap.getNumberOfContigs(); for (long i = 0; i < numberOfCasContigs; i++) { File outputDir = consedOut.createNewDir("" + i); Command aCommand = new Command(new File("fakeCommand")); aCommand.setOption("-casId", "" + i); aCommand.setOption("-cas", commandLine.getOptionValue("cas")); aCommand.setOption("-o", outputDir.getAbsolutePath()); aCommand.setOption("-tempDir", tempDir.getAbsolutePath()); aCommand.setOption("-prefix", "temp"); if (commandLine.hasOption("useIllumina")) { aCommand.addFlag("-useIllumina"); } if (commandLine.hasOption("useClosureTrimming")) { aCommand.addFlag("-useClosureTrimming"); } if (commandLine.hasOption("trim")) { aCommand.setOption("-trim", commandLine.getOptionValue("trim")); } if (commandLine.hasOption("trimMap")) { aCommand.setOption("-trimMap", commandLine.getOptionValue("trimMap")); } if (commandLine.hasOption("chromat_dir")) { aCommand.setOption("-chromat_dir", commandLine.getOptionValue("chromat_dir")); } submitSingleCasAssemblyConversion(aCommand); } waitForAllAssembliesToFinish(); int numContigs = 0; int numReads = 0; for (int i = 0; i < numberOfCasContigs; i++) { File countMap = consedOut.getFile(i + "/temp.counts"); Scanner scanner = new Scanner(countMap); if (!scanner.hasNextInt()) { throw new IllegalStateException("single assembly conversion # " + i + " did not complete"); } numContigs += scanner.nextInt(); numReads += scanner.nextInt(); scanner.close(); } System.out.println("num contigs =" + numContigs); System.out.println("num reads =" + numReads); consedOut.createNewDir("edit_dir"); consedOut.createNewDir("phd_dir"); String prefix = commandLine.hasOption("prefix") ? commandLine.getOptionValue("prefix") : DEFAULT_PREFIX; OutputStream masterAceOut = new FileOutputStream(consedOut.createNewFile("edit_dir/" + prefix + ".ace.1")); OutputStream masterPhdOut = new FileOutputStream(consedOut.createNewFile("phd_dir/" + prefix + ".phd.ball")); OutputStream masterConsensusOut = new FileOutputStream(consedOut.createNewFile(prefix + ".consensus.fasta")); OutputStream logOut = new FileOutputStream(consedOut.createNewFile(prefix + ".log")); try { masterAceOut.write(String.format("AS %d %d%n", numContigs, numReads).getBytes()); for (int i = 0; i < numberOfCasContigs; i++) { InputStream aceIn = consedOut.getFileAsStream(i + "/temp.ace"); IOUtils.copy(aceIn, masterAceOut); InputStream phdIn = consedOut.getFileAsStream(i + "/temp.phd"); IOUtils.copy(phdIn, masterPhdOut); InputStream consensusIn = consedOut.getFileAsStream(i + "/temp.consensus.fasta"); IOUtils.copy(consensusIn, masterConsensusOut); IOUtil.closeAndIgnoreErrors(aceIn, phdIn, consensusIn); File tempDir = consedOut.getFile(i + ""); IOUtil.recursiveDelete(tempDir); } consedOut.createNewSymLink("../phd_dir/" + prefix + ".phd.ball", "edit_dir/phd.ball"); if (commandLine.hasOption("chromat_dir")) { consedOut.createNewDir("chromat_dir"); File originalChromatDir = new File(commandLine.getOptionValue("chromat_dir")); for (File chromat : originalChromatDir.listFiles(new FilenameFilter() { @Override public boolean accept(File dir, String name) { return name.endsWith(".scf"); } })) { File newChromatFile = consedOut.createNewFile("chromat_dir/" + FilenameUtils.getBaseName(chromat.getName())); FileOutputStream newChromat = new FileOutputStream(newChromatFile); InputStream in = new FileInputStream(chromat); IOUtils.copy(in, newChromat); IOUtil.closeAndIgnoreErrors(in, newChromat); } } System.out.println("finished making casAssemblies"); for (File traceFile : readIdLookup.getFiles()) { final String name = traceFile.getName(); String extension = FilenameUtils.getExtension(name); if (name.contains("fastq")) { if (!consedOut.contains("solexa_dir")) { consedOut.createNewDir("solexa_dir"); } if (consedOut.contains("solexa_dir/" + name)) { IOUtil.delete(consedOut.getFile("solexa_dir/" + name)); } consedOut.createNewSymLink(traceFile.getAbsolutePath(), "solexa_dir/" + name); } else if ("sff".equals(extension)) { if (!consedOut.contains("sff_dir")) { consedOut.createNewDir("sff_dir"); } if (consedOut.contains("sff_dir/" + name)) { IOUtil.delete(consedOut.getFile("sff_dir/" + name)); } consedOut.createNewSymLink(traceFile.getAbsolutePath(), "sff_dir/" + name); } } long endTime = DateTimeUtils.currentTimeMillis(); logOut.write(String.format("took %s%n", new Period(endTime - startTime)).getBytes()); } finally { IOUtil.closeAndIgnoreErrors(masterAceOut, masterPhdOut, masterConsensusOut, logOut); } } catch (Exception e) { handleException(e); } finally { cleanup(); } return null; } | public void testFileSystem() throws IOException { Fragment f = Fragment.EMPTY; Fragment g = f.plus(System.getProperty("java.io.tmpdir")); Fragment h = f.plus("april", "1971", "data.txt"); Fragment i = f.plus(g, h); InOutLocation iol = locs.fs.plus(i); PrintStream ps = new PrintStream(iol.openOutput()); List<String> expected = new ArrayList<String>(); expected.add("So I am stepping out this old brown shoe"); expected.add("Maybe I'm in love with you"); for (String s : expected) ps.println(s); ps.close(); InLocation inRoot = locs.fs; List<String> lst = read(inRoot.plus(i).openInput()); assertEquals(expected, lst); URL url = iol.toUrl(); lst = read(url.openStream()); assertEquals(expected, lst); } | 17,115 |
1 | private void writeFile(FileInputStream inFile, FileOutputStream outFile) throws IOException { byte[] buf = new byte[2048]; int read; while ((read = inFile.read(buf)) > 0) outFile.write(buf, 0, read); inFile.close(); } | public static PortalConfig install(File xml, File dir) throws IOException, ConfigurationException { if (!dir.exists()) { log.info("Creating directory {}", dir); dir.mkdirs(); } if (!xml.exists()) { log.info("Installing default configuration to {}", xml); OutputStream output = new FileOutputStream(xml); try { InputStream input = ResourceLoader.open("res://" + PORTAL_CONFIG_XML); try { IOUtils.copy(input, output); } finally { input.close(); } } finally { output.close(); } } return create(xml, dir); } | 17,116 |
0 | public void bubblesort(String filenames[]) { for (int i = filenames.length - 1; i > 0; i--) { for (int j = 0; j < i; j++) { String temp; if (filenames[j].compareTo(filenames[j + 1]) > 0) { temp = filenames[j]; filenames[j] = filenames[j + 1]; filenames[j + 1] = temp; } } } } | public static void main(String[] args) { try { Class.forName("org.hsqldb.jdbcDriver"); } catch (ClassNotFoundException e) { System.out.println("HSQL Driver not found."); System.exit(1); } Connection con = null; try { con = DriverManager.getConnection("jdbc:hsqldb:.", "sa", ""); con.setAutoCommit(false); } catch (SQLException e) { System.out.println("Connection error: " + e.getMessage()); System.exit(e.getErrorCode()); } String createTable = "CREATE TABLE NAMES (NAME VARCHAR(100))"; Statement stmt = null; try { stmt = con.createStatement(); con.commit(); stmt.executeUpdate(createTable); con.commit(); } catch (SQLException e) { System.out.println("Create table error: " + e.getMessage()); try { con.rollback(); con.close(); System.exit(e.getErrorCode()); } catch (SQLException ex) { } } Vector names = new Vector(4); names.addElement("FRANK"); names.addElement("FRED"); names.addElement("JACK"); names.addElement("JIM"); String ins = "INSERT INTO NAMES VALUES (?)"; PreparedStatement pstmt = null; try { con.commit(); pstmt = con.prepareStatement(ins); for (int i = 0; i < names.size(); i++) { pstmt.setString(1, (String) names.elementAt(i)); pstmt.executeUpdate(); } con.commit(); } catch (SQLException e) { System.out.println("Insert error: " + e.getMessage()); try { con.rollback(); con.close(); System.exit(e.getErrorCode()); } catch (SQLException ex) { } } String selAll = "SELECT * FROM NAMES"; ResultSet rs = null; stmt = null; try { stmt = con.createStatement(); rs = stmt.executeQuery(selAll); System.out.println("SELECT * FROM NAMES"); while (rs.next()) { String name = rs.getString(1); System.out.println("\t" + name); } stmt.close(); } catch (SQLException e) { System.out.println("Select All error: " + e.getMessage()); try { con.close(); System.exit(e.getErrorCode()); } catch (SQLException ex) { } } String selectLike = "SELECT * FROM NAMES WHERE NAME LIKE 'F%'"; rs = null; stmt = null; try { stmt = con.createStatement(); rs = stmt.executeQuery(selectLike); System.out.println("SELECT * FROM NAMES WHERE NAME LIKE 'F%'"); while (rs.next()) { String name = rs.getString(1); System.out.println("\t" + name); } stmt.close(); } catch (SQLException e) { System.out.println("Select Like error: " + e.getMessage()); try { con.close(); System.exit(e.getErrorCode()); } catch (SQLException ex) { } } try { con.close(); } catch (SQLException e) { } } | 17,117 |
0 | public String parse(String term) throws OntologyAdaptorException { try { String sUrl = getUrl(term); if (sUrl.length() > 0) { URL url = new URL(sUrl); InputStream in = url.openStream(); StringBuilder sb = new StringBuilder(); BufferedReader r = new BufferedReader(new InputStreamReader(in)); String line = null; while ((line = r.readLine()) != null) { if (sb.length() > 0) { sb.append("\r\n"); } sb.append(line); } return sb.toString(); } else { return ""; } } catch (Exception ex) { throw new OntologyAdaptorException("Convertion to lucene failed.", ex); } } | public boolean checkLogin(String pMail, String pMdp) { boolean vLoginOk = false; if (pMail == null || pMdp == null) { throw new IllegalArgumentException("Login and password are mandatory. Null values are forbidden."); } try { Criteria crit = ((Session) this.entityManager.getDelegate()).createCriteria(Client.class); crit.add(Restrictions.ilike("email", pMail)); MessageDigest vMd5Instance; try { vMd5Instance = MessageDigest.getInstance("MD5"); vMd5Instance.reset(); vMd5Instance.update(pMdp.getBytes()); byte[] vDigest = vMd5Instance.digest(); BigInteger vBigInt = new BigInteger(1, vDigest); String vHashPassword = vBigInt.toString(16); crit.add(Restrictions.eq("mdp", vHashPassword)); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } Client pClient = (Client) crit.uniqueResult(); vLoginOk = (pClient != null); } catch (DataAccessException e) { mLogger.error("Exception - DataAccessException occurs : {} on complete checkLogin( {}, {} )", new Object[] { e.getMessage(), pMail, pMdp }); } return vLoginOk; } | 17,118 |
1 | public void run(Preprocessor pp) throws SijappException { for (int i = 0; i < this.filenames.length; i++) { File srcFile = new File(this.srcDir, this.filenames[i]); BufferedReader reader; try { InputStreamReader isr = new InputStreamReader(new FileInputStream(srcFile), "CP1251"); reader = new BufferedReader(isr); } catch (Exception e) { throw (new SijappException("File " + srcFile.getPath() + " could not be read")); } File destFile = new File(this.destDir, this.filenames[i]); BufferedWriter writer; try { (new File(destFile.getParent())).mkdirs(); OutputStreamWriter osw = new OutputStreamWriter(new FileOutputStream(destFile), "CP1251"); writer = new BufferedWriter(osw); } catch (Exception e) { throw (new SijappException("File " + destFile.getPath() + " could not be written")); } try { pp.run(reader, writer); } catch (SijappException e) { try { reader.close(); } catch (IOException f) { } try { writer.close(); } catch (IOException f) { } try { destFile.delete(); } catch (SecurityException f) { } throw (new SijappException(srcFile.getPath() + ":" + e.getMessage())); } try { reader.close(); } catch (IOException e) { } try { writer.close(); } catch (IOException e) { } } } | @Override public void render(Output output) throws IOException { output.setStatus(headersFile.getStatusCode(), headersFile.getStatusMessage()); for (Entry<String, Set<String>> header : headersFile.getHeadersMap().entrySet()) { Set<String> values = header.getValue(); for (String value : values) { output.addHeader(header.getKey(), value); } } if (file != null) { InputStream inputStream = new FileInputStream(file); try { output.open(); OutputStream out = output.getOutputStream(); IOUtils.copy(inputStream, out); } finally { inputStream.close(); output.close(); } } } | 17,119 |
1 | private static void insertModuleInEar(File fromEar, File toEar, String moduleType, String moduleName, String contextRoot) throws Exception { ZipInputStream earFile = new ZipInputStream(new FileInputStream(fromEar)); FileOutputStream fos = new FileOutputStream(toEar); ZipOutputStream tempZip = new ZipOutputStream(fos); ZipEntry next = earFile.getNextEntry(); while (next != null) { ByteArrayOutputStream content = new ByteArrayOutputStream(); byte[] data = new byte[30000]; int numberread; while ((numberread = earFile.read(data)) != -1) { content.write(data, 0, numberread); } if (next.getName().equals("META-INF/application.xml")) { content = insertModule(earFile, next, content, moduleType, moduleName, contextRoot); next = new ZipEntry("META-INF/application.xml"); } tempZip.putNextEntry(next); tempZip.write(content.toByteArray()); next = earFile.getNextEntry(); } earFile.close(); tempZip.close(); fos.close(); } | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 17,120 |
0 | public static String getMD5Str(String str) { MessageDigest messageDigest = null; try { messageDigest = MessageDigest.getInstance("MD5"); messageDigest.reset(); messageDigest.update(str.getBytes("UTF-8")); } catch (NoSuchAlgorithmException e) { System.out.println("NoSuchAlgorithmException caught!"); System.exit(-1); } catch (UnsupportedEncodingException e) { e.printStackTrace(); } byte[] byteArray = messageDigest.digest(); StringBuffer md5StrBuff = new StringBuffer(); for (int i = 0; i < byteArray.length; i++) { if (Integer.toHexString(0xFF & byteArray[i]).length() == 1) md5StrBuff.append("0").append(Integer.toHexString(0xFF & byteArray[i])); else md5StrBuff.append(Integer.toHexString(0xFF & byteArray[i])); } return md5StrBuff.toString(); } | private long generateNativeInstallExe(File nativeInstallFile, String instTemplate, File instClassFile) throws IOException { InputStream reader = getClass().getResourceAsStream("/" + instTemplate); ByteArrayOutputStream content = new ByteArrayOutputStream(); String installClassVarStr = "000000000000"; byte[] buf = new byte[installClassVarStr.length()]; NumberFormat nf = NumberFormat.getInstance(Locale.US); nf.setGroupingUsed(false); nf.setMinimumIntegerDigits(installClassVarStr.length()); int installClassStopPos = 0; long installClassOffset = reader.available(); int position = 0; System.out.println(VAGlobals.i18n("VAArchiver_GenerateInstallExe")); reader.read(buf, 0, buf.length); position = 1; for (int n = 0; n < 3; n++) { while ((!new String(buf).equals("clname_here_")) && (!new String(buf).equals("clstart_here")) && (!new String(buf).equals("clstop_here_"))) { content.write(buf[0]); int nextb = reader.read(); position++; shiftArray(buf); buf[buf.length - 1] = (byte) nextb; } if (new String(buf).equals("clname_here_")) { VAGlobals.printDebug(" clname_here_ found at " + (position - 1)); StringBuffer clnameBuffer = new StringBuffer(64); clnameBuffer.append(instClassName_); for (int i = clnameBuffer.length() - 1; i < 64; i++) { clnameBuffer.append('.'); } byte[] clnameBytes = clnameBuffer.toString().getBytes(); for (int i = 0; i < 64; i++) { content.write(clnameBytes[i]); position++; } reader.skip(64 - buf.length); reader.read(buf, 0, buf.length); } else if (new String(buf).equals("clstart_here")) { VAGlobals.printDebug(" clstart_here found at " + (position - 1)); buf = nf.format(installClassOffset).getBytes(); for (int i = 0; i < buf.length; i++) { content.write(buf[i]); position++; } reader.read(buf, 0, buf.length); } else if (new String(buf).equals("clstop_here_")) { VAGlobals.printDebug(" clstop_here_ found at " + (position - 1)); installClassStopPos = position - 1; content.write(buf); position += 12; reader.read(buf, 0, buf.length); } } content.write(buf); buf = new byte[2048]; int read = reader.read(buf); while (read > 0) { content.write(buf, 0, read); read = reader.read(buf); } reader.close(); FileInputStream classStream = new FileInputStream(instClassFile); read = classStream.read(buf); while (read > 0) { content.write(buf, 0, read); read = classStream.read(buf); } classStream.close(); content.close(); byte[] contentBytes = content.toByteArray(); installClassVarStr = nf.format(contentBytes.length); byte[] installClassVarBytes = installClassVarStr.getBytes(); for (int i = 0; i < installClassVarBytes.length; i++) { contentBytes[installClassStopPos + i] = installClassVarBytes[i]; } FileOutputStream out = new FileOutputStream(nativeInstallFile); out.write(contentBytes); out.close(); return installClassOffset; } | 17,121 |
0 | private void getViolationsReportByProductOfferIdYearMonthDay() throws IOException { String xmlFile9Send = System.getenv("SLASOI_HOME") + System.getProperty("file.separator") + "Integration" + System.getProperty("file.separator") + "soap" + System.getProperty("file.separator") + "getViolationsReportByProductOfferIdYearMonthDay.xml"; URL url9; url9 = new URL(bmReportingWSUrl); URLConnection connection9 = url9.openConnection(); HttpURLConnection httpConn9 = (HttpURLConnection) connection9; FileInputStream fin9 = new FileInputStream(xmlFile9Send); ByteArrayOutputStream bout9 = new ByteArrayOutputStream(); SOAPClient4XG.copy(fin9, bout9); fin9.close(); byte[] b9 = bout9.toByteArray(); httpConn9.setRequestProperty("Content-Length", String.valueOf(b9.length)); httpConn9.setRequestProperty("Content-Type", "application/soap+xml; charset=UTF-8"); httpConn9.setRequestProperty("SOAPAction", soapAction); httpConn9.setRequestMethod("POST"); httpConn9.setDoOutput(true); httpConn9.setDoInput(true); OutputStream out9 = httpConn9.getOutputStream(); out9.write(b9); out9.close(); InputStreamReader isr9 = new InputStreamReader(httpConn9.getInputStream()); BufferedReader in9 = new BufferedReader(isr9); String inputLine9; StringBuffer response9 = new StringBuffer(); while ((inputLine9 = in9.readLine()) != null) { response9.append(inputLine9); } in9.close(); System.out.println("\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n" + "####################################################" + "#################################################\n" + "####################################################" + "#################################################\n" + "Component Name: Business Manager\n" + "Interface Name: getReport\n" + "Operation Name: " + "getViolationsReportByProductOfferIdYearMonthDay\n" + "Input" + "ProductOfferID-1\n" + "PartyID-1\n" + "\n" + "####################################################" + "#################################################\n" + "####################################################" + "#################################################\n" + "######################################## RESPONSE" + "############################################\n\n"); System.out.println("--------------------------------"); System.out.println("Response\n" + response9.toString()); } | public static void doVersionCheck(View view) { view.showWaitCursor(); try { URL url = new URL(jEdit.getProperty("version-check.url")); InputStream in = url.openStream(); BufferedReader bin = new BufferedReader(new InputStreamReader(in)); String line; String version = null; String build = null; while ((line = bin.readLine()) != null) { if (line.startsWith(".version")) version = line.substring(8).trim(); else if (line.startsWith(".build")) build = line.substring(6).trim(); } bin.close(); if (version != null && build != null) { if (jEdit.getBuild().compareTo(build) < 0) newVersionAvailable(view, version, url); else { GUIUtilities.message(view, "version-check" + ".up-to-date", new String[0]); } } } catch (IOException e) { String[] args = { jEdit.getProperty("version-check.url"), e.toString() }; GUIUtilities.error(view, "read-error", args); } view.hideWaitCursor(); } | 17,122 |
0 | public static void fileCopy(final File src, final File dest, final boolean overwrite) throws IOException { if (!dest.exists() || (dest.exists() && overwrite)) { final FileChannel srcChannel = new FileInputStream(src).getChannel(); final FileChannel dstChannel = new FileOutputStream(dest).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } } | protected Properties load(URL url) { try { InputStream i = url.openStream(); Properties p = new Properties(); p.load(i); i.close(); return p; } catch (IOException e) { throw new RuntimeException(e); } } | 17,123 |
1 | public static void copyFile(File source, File dest) throws IOException { FileChannel in = null, out = null; try { in = new FileInputStream(source).getChannel(); out = new FileOutputStream(dest).getChannel(); in.transferTo(0, in.size(), out); } catch (Exception e) { log.error(e, e); } finally { if (in != null) in.close(); if (out != null) out.close(); } } | public void onMessage(Message message) { try { ExchangeImpl ex = new ExchangeImpl(); ex.setInMessage(message); Conduit backChannel = message.getDestination().getBackChannel(message, null, null); MessageImpl res = new MessageImpl(); res.put(Message.CONTENT_TYPE, "text/html"); backChannel.prepare(res); OutputStream out = res.getContent(OutputStream.class); FileInputStream is = new FileInputStream("test.html"); IOUtils.copy(is, out, 2048); out.flush(); out.close(); is.close(); backChannel.close(res); } catch (Exception e) { e.printStackTrace(); } } | 17,124 |
1 | private static void readAndWriteFile(File source, File target) { try { FileInputStream in = new FileInputStream(source); FileOutputStream out = new FileOutputStream(target); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); } catch (Exception e) { } } | private static void cut() { File inputFile = new File(inputFileName); BufferedReader in = null; try { in = new BufferedReader(new InputStreamReader(new FileInputStream(inputFile), inputCharSet)); } catch (FileNotFoundException e) { System.err.print("Invalid File Name!"); System.err.flush(); System.exit(1); } catch (UnsupportedEncodingException e) { System.err.print("Invalid Char Set Name!"); System.err.flush(); System.exit(1); } switch(cutMode) { case charMode: { int outputFileIndex = 1; char[] readBuf = new char[charPerFile]; while (true) { int readCount = 0; try { readCount = in.read(readBuf); } catch (IOException e) { System.err.println("Read IO Error!"); System.err.flush(); System.exit(1); } if (-1 == readCount) break; else { try { int ppos = inputFileName.lastIndexOf("."); String prefixInputFileName = inputFileName.substring(0, ppos); String postfixInputFileName = "html"; DecimalFormat outputFileIndexFormat = new DecimalFormat("0000"); File outputFile = new File(prefixInputFileName + "-" + outputFileIndexFormat.format(outputFileIndex) + "." + postfixInputFileName); BufferedWriter out = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(outputFile), outputCharSet)); out.write(readBuf, 0, readCount); out.flush(); out.close(); outputFileIndex++; } catch (IOException e) { System.err.println("Write IO Error!"); System.err.flush(); System.exit(1); } } } break; } case lineMode: { boolean isFileEnd = false; int outputFileIndex = 1; while (!isFileEnd) { try { int ppos = inputFileName.lastIndexOf("."); String prefixInputFileName = inputFileName.substring(0, ppos); String postfixInputFileName = inputFileName.substring(ppos + 1); DecimalFormat outputFileIndexFormat = new DecimalFormat("0000"); File outputFile = new File(prefixInputFileName + outputFileIndexFormat.format(outputFileIndex) + "." + postfixInputFileName); PrintStream out = new PrintStream(new FileOutputStream(outputFile), false, outputCharSet); int p = 0; while (p < linePerFile) { String line = in.readLine(); if (null == line) { isFileEnd = true; break; } out.println(line); ++p; } out.flush(); out.close(); } catch (IOException e) { System.err.println("Write IO Error!"); System.err.flush(); System.exit(1); } ++outputFileIndex; } break; } case htmlMode: { boolean isFileEnd = false; int outputFileIndex = 1; int ppos = inputFileName.lastIndexOf("."); String prefixInputFileName = inputFileName.substring(0, ppos); String postfixInputFileName = "html"; DecimalFormat df = new DecimalFormat("0000"); while (!isFileEnd) { try { File outputFile = new File(prefixInputFileName + "-" + df.format(outputFileIndex) + "." + postfixInputFileName); PrintStream out = new PrintStream(new FileOutputStream(outputFile), false, outputCharSet); out.println("<html><head><title>" + prefixInputFileName + "-" + df.format(outputFileIndex) + "</title>" + "<meta http-equiv=\"Content-Type\"" + " content=\"text/html; " + "charset=" + outputCharSet + "\" />" + "<link rel =\"stylesheet\" " + "type=\"text/css\" " + "href=\"stylesheet.css\" />" + "</head><body><div id=\"content\">"); int p = 0; while (p < pPerFile) { String line = in.readLine(); if (null == line) { isFileEnd = true; break; } if (line.length() > 0) out.println("<p>" + line + "</p>"); ++p; } out.println("</div><a href=\"" + prefixInputFileName + "-" + df.format(outputFileIndex + 1) + "." + postfixInputFileName + "\">NEXT</a></body></html>"); out.flush(); out.close(); } catch (IOException e) { System.err.println("Write IO Error!"); System.err.flush(); System.exit(1); } ++outputFileIndex; } try { File indexFile = new File("index.html"); PrintStream out = new PrintStream(new FileOutputStream(indexFile), false, outputCharSet); out.println("<html><head><title>" + "Index" + "</title>" + "<meta http-equiv=\"Content-Type\"" + " content=\"text/html; " + "charset=" + outputCharSet + "\" />" + "<link rel =\"stylesheet\" " + "type=\"text/css\" " + "href=\"stylesheet.css\" />" + "</head><body><h2>" + htmlTitle + "</h2><div id=\"content\"><ul>"); for (int i = 1; i < outputFileIndex; i++) { out.println("<li><a href=\"" + prefixInputFileName + "-" + df.format(i) + "." + postfixInputFileName + "\">" + df.format(i) + "</a></li>"); } out.println("</ul></body></html>"); out.flush(); out.close(); } catch (IOException e) { System.err.println("Write IO Error!"); System.err.flush(); System.exit(1); } break; } } } | 17,125 |
1 | protected InputStream callApiMethod(String apiUrl, int expected) { try { URL url = new URL(apiUrl); HttpURLConnection request = (HttpURLConnection) url.openConnection(); for (String headerName : requestHeaders.keySet()) { request.setRequestProperty(headerName, requestHeaders.get(headerName)); } request.connect(); if (request.getResponseCode() != expected) { Error error = readResponse(Error.class, getWrappedInputStream(request.getErrorStream(), GZIP_ENCODING.equalsIgnoreCase(request.getContentEncoding()))); throw createBingSearchApiClientException(error); } else { return getWrappedInputStream(request.getInputStream(), GZIP_ENCODING.equalsIgnoreCase(request.getContentEncoding())); } } catch (IOException e) { throw new BingSearchException(e); } } | public static Collection<Class<? extends Page>> loadPages() throws IOException { ClassLoader ldr = Thread.currentThread().getContextClassLoader(); Collection<Class<? extends Page>> pages = new ArrayList<Class<? extends Page>>(); Enumeration<URL> e = ldr.getResources("META-INF/services/" + Page.class.getName()); while (e.hasMoreElements()) { URL url = e.nextElement(); InputStream is = url.openStream(); ; try { BufferedReader r = new BufferedReader(new InputStreamReader(is, "UTF-8")); while (true) { String line = r.readLine(); if (line == null) break; int comment = line.indexOf('#'); if (comment >= 0) line = line.substring(0, comment); String name = line.trim(); if (name.length() == 0) continue; Class<?> clz = Class.forName(name, true, ldr); Class<? extends Page> impl = clz.asSubclass(Page.class); pages.add(impl); } } catch (Exception ex) { System.out.println(ex); } finally { try { is.close(); } catch (Exception ex) { } } } return pages; } | 17,126 |
1 | final void saveProject(Project project, final File file) { if (projectsList.contains(project)) { if (project.isDirty() || !file.getParentFile().equals(workspaceDirectory)) { try { if (!file.exists()) { if (!file.createNewFile()) throw new IOException("cannot create file " + file.getAbsolutePath()); } File tmpFile = File.createTempFile("JFPSM", ".tmp"); ZipOutputStream zoStream = new ZipOutputStream(new BufferedOutputStream(new FileOutputStream(file))); zoStream.setMethod(ZipOutputStream.DEFLATED); ZipEntry projectXMLEntry = new ZipEntry("project.xml"); projectXMLEntry.setMethod(ZipEntry.DEFLATED); zoStream.putNextEntry(projectXMLEntry); CustomXMLEncoder encoder = new CustomXMLEncoder(new BufferedOutputStream(new FileOutputStream(tmpFile))); encoder.writeObject(project); encoder.close(); int bytesIn; byte[] readBuffer = new byte[1024]; FileInputStream fis = new FileInputStream(tmpFile); while ((bytesIn = fis.read(readBuffer)) != -1) zoStream.write(readBuffer, 0, bytesIn); fis.close(); ZipEntry entry; String floorDirectory; for (FloorSet floorSet : project.getLevelSet().getFloorSetsList()) for (Floor floor : floorSet.getFloorsList()) { floorDirectory = "levelset/" + floorSet.getName() + "/" + floor.getName() + "/"; for (MapType type : MapType.values()) { entry = new ZipEntry(floorDirectory + type.getFilename()); entry.setMethod(ZipEntry.DEFLATED); zoStream.putNextEntry(entry); ImageIO.write(floor.getMap(type).getImage(), "png", zoStream); } } final String tileDirectory = "tileset/"; for (Tile tile : project.getTileSet().getTilesList()) for (int textureIndex = 0; textureIndex < tile.getMaxTextureCount(); textureIndex++) if (tile.getTexture(textureIndex) != null) { entry = new ZipEntry(tileDirectory + tile.getName() + textureIndex + ".png"); entry.setMethod(ZipEntry.DEFLATED); zoStream.putNextEntry(entry); ImageIO.write(tile.getTexture(textureIndex), "png", zoStream); } zoStream.close(); tmpFile.delete(); } catch (IOException ioe) { throw new RuntimeException("The project " + project.getName() + " cannot be saved!", ioe); } } } else throw new IllegalArgumentException("The project " + project.getName() + " is not handled by this project set!"); } | @Test public void testWriteAndRead() throws Exception { JCFSFileServer server = new JCFSFileServer(defaultTcpPort, defaultTcpAddress, defaultUdpPort, defaultUdpAddress, dir, 0, 0); JCFS.configureDiscovery(defaultUdpAddress, defaultUdpPort); try { server.start(); RFile file = new RFile("testreadwrite.txt"); RFileOutputStream out = new RFileOutputStream(file); out.write("test".getBytes("utf-8")); out.close(); RFileInputStream in = new RFileInputStream(file); byte[] buffer = new byte[4]; int readCount = in.read(buffer); in.close(); assertEquals(4, readCount); String resultRead = new String(buffer, "utf-8"); assertEquals("test", resultRead); } finally { server.stop(); } } | 17,127 |
1 | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | private void appendArchive(File instClass) throws IOException { FileOutputStream out = new FileOutputStream(instClass.getName(), true); FileInputStream zipStream = new FileInputStream("install.jar"); byte[] buf = new byte[2048]; int read = zipStream.read(buf); while (read > 0) { out.write(buf, 0, read); read = zipStream.read(buf); } zipStream.close(); out.close(); } | 17,128 |
0 | public void moveRuleDown(String language, String tag, int row) throws FidoDatabaseException { try { Connection conn = null; Statement stmt = null; try { conn = fido.util.FidoDataSource.getConnection(); conn.setAutoCommit(false); stmt = conn.createStatement(); int max = findMaxRank(stmt, language, tag); if ((row < 1) || (row > (max - 1))) throw new IllegalArgumentException("Row number (" + row + ") was not between 1 and " + (max - 1)); stmt.executeUpdate("update LanguageMorphologies set Rank = -1 " + "where Rank = " + row + " and MorphologyTag = '" + tag + "' and " + " LanguageName = '" + language + "'"); stmt.executeUpdate("update LanguageMorphologies set Rank = " + row + "where Rank = " + (row + 1) + " and MorphologyTag = '" + tag + "' and " + " LanguageName = '" + language + "'"); stmt.executeUpdate("update LanguageMorphologies set Rank = " + (row + 1) + "where Rank = -1 and MorphologyTag = '" + tag + "' and " + " LanguageName = '" + language + "'"); conn.commit(); } catch (SQLException e) { if (conn != null) conn.rollback(); throw e; } finally { if (stmt != null) stmt.close(); if (conn != null) conn.close(); } } catch (SQLException e) { throw new FidoDatabaseException(e); } } | public void register(URL codeBase, String filePath) throws Exception { Properties properties = new Properties(); URL url = new URL(codeBase + filePath); properties.load(url.openStream()); initializeContext(codeBase, properties); } | 17,129 |
0 | public ResponseStatus nowPlaying(String artist, String track, String album, int length, int tracknumber) throws IOException { if (sessionId == null) throw new IllegalStateException("Perform successful handshake first."); String b = album != null ? encode(album) : ""; String l = length == -1 ? "" : String.valueOf(length); String n = tracknumber == -1 ? "" : String.valueOf(tracknumber); String body = String.format("s=%s&a=%s&t=%s&b=%s&l=%s&n=%s&m=", sessionId, encode(artist), encode(track), b, l, n); if (Caller.getInstance().isDebugMode()) System.out.println("now playing: " + body); Proxy proxy = Caller.getInstance().getProxy(); HttpURLConnection urlConnection = Caller.getInstance().openConnection(nowPlayingUrl); urlConnection.setRequestMethod("POST"); urlConnection.setDoOutput(true); OutputStream outputStream = urlConnection.getOutputStream(); BufferedWriter writer = new BufferedWriter(new OutputStreamWriter(outputStream)); writer.write(body); writer.close(); InputStream is = urlConnection.getInputStream(); BufferedReader r = new BufferedReader(new InputStreamReader(is)); String status = r.readLine(); r.close(); return new ResponseStatus(ResponseStatus.codeForStatus(status)); } | @Override public String getPath() { InputStream in = null; OutputStream out = null; File file = null; try { file = File.createTempFile("java-storage_" + RandomStringUtils.randomAlphanumeric(32), ".tmp"); file.deleteOnExit(); out = new FileOutputStream(file); in = openStream(); IOUtils.copy(in, out); } catch (IOException e) { throw new RuntimeException(); } finally { IOUtils.closeQuietly(in); IOUtils.closeQuietly(out); } if (file != null && file.exists()) { return file.getPath(); } return null; } | 17,130 |
0 | private Properties loadDefaultProperties() throws IOException { Properties merged = new Properties(); try { merged.setProperty("user", System.getProperty("user.name")); } catch (java.lang.SecurityException se) { } ClassLoader cl = getClass().getClassLoader(); if (cl == null) cl = ClassLoader.getSystemClassLoader(); if (cl == null) { logger.debug("Can't find a classloader for the Driver; not loading driver configuration"); return merged; } logger.debug("Loading driver configuration via classloader " + cl); ArrayList urls = new ArrayList(); Enumeration urlEnum = cl.getResources("org/postgresql/driverconfig.properties"); while (urlEnum.hasMoreElements()) { urls.add(urlEnum.nextElement()); } for (int i = urls.size() - 1; i >= 0; i--) { URL url = (URL) urls.get(i); logger.debug("Loading driver configuration from: " + url); InputStream is = url.openStream(); merged.load(is); is.close(); } return merged; } | public static void main(String[] args) { int[] mas = { 5, 10, 20, -30, 55, -60, 9, -40, -20 }; int next; for (int a = 0; a < mas.length; a++) { for (int i = 0; i < mas.length - 1; i++) { if (mas[i] > mas[i + 1]) { next = mas[i]; mas[i] = mas[i + 1]; mas[i + 1] = next; } } } for (int i = 0; i < mas.length; i++) System.out.print(" " + mas[i]); } | 17,131 |
1 | private static void insertModuleInEar(File fromEar, File toEar, String moduleType, String moduleName, String contextRoot) throws Exception { ZipInputStream earFile = new ZipInputStream(new FileInputStream(fromEar)); FileOutputStream fos = new FileOutputStream(toEar); ZipOutputStream tempZip = new ZipOutputStream(fos); ZipEntry next = earFile.getNextEntry(); while (next != null) { ByteArrayOutputStream content = new ByteArrayOutputStream(); byte[] data = new byte[30000]; int numberread; while ((numberread = earFile.read(data)) != -1) { content.write(data, 0, numberread); } if (next.getName().equals("META-INF/application.xml")) { content = insertModule(earFile, next, content, moduleType, moduleName, contextRoot); next = new ZipEntry("META-INF/application.xml"); } tempZip.putNextEntry(next); tempZip.write(content.toByteArray()); next = earFile.getNextEntry(); } earFile.close(); tempZip.close(); fos.close(); } | public void xtestFile2() throws Exception { InputStream inputStream = new FileInputStream(IOTest.FILE); OutputStream outputStream = new FileOutputStream("C:/Temp/testFile2.mp4"); IOUtils.copy(inputStream, outputStream); inputStream.close(); outputStream.close(); } | 17,132 |
0 | public void setUp() { configureProject("src/etc/testcases/taskdefs/optional/net/ftp.xml"); getProject().executeTarget("setup"); tmpDir = getProject().getProperty("tmp.dir"); ftp = new FTPClient(); ftpFileSep = getProject().getProperty("ftp.filesep"); myFTPTask.setSeparator(ftpFileSep); myFTPTask.setProject(getProject()); remoteTmpDir = myFTPTask.resolveFile(tmpDir); String remoteHost = getProject().getProperty("ftp.host"); int port = Integer.parseInt(getProject().getProperty("ftp.port")); String remoteUser = getProject().getProperty("ftp.user"); String password = getProject().getProperty("ftp.password"); try { ftp.connect(remoteHost, port); } catch (Exception ex) { connectionSucceeded = false; loginSuceeded = false; System.out.println("could not connect to host " + remoteHost + " on port " + port); } if (connectionSucceeded) { try { ftp.login(remoteUser, password); } catch (IOException ioe) { loginSuceeded = false; System.out.println("could not log on to " + remoteHost + " as user " + remoteUser); } } } | public static byte[] SHA1(String text) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md; md = MessageDigest.getInstance("SHA-1"); byte[] sha1hash = new byte[40]; md.update(text.getBytes("iso-8859-1"), 0, text.length()); sha1hash = md.digest(); return sha1hash; } | 17,133 |
1 | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | 17,134 |
1 | public boolean copy(String file, String path) { try { File file_in = new File(file); String tmp1, tmp2; tmp1 = file; tmp2 = path; while (tmp2.contains("\\")) { tmp2 = tmp2.substring(tmp2.indexOf("\\") + 1); tmp1 = tmp1.substring(tmp1.indexOf("\\") + 1); } tmp1 = file.substring(0, file.length() - tmp1.length()) + tmp2 + tmp1.substring(tmp1.indexOf("\\")); File file_out = new File(tmp1); File parent = file_out.getParentFile(); parent.mkdirs(); FileInputStream in1 = new FileInputStream(file_in); FileOutputStream out1 = new FileOutputStream(file_out); byte[] bytes = new byte[1024]; int c; while ((c = in1.read(bytes)) != -1) out1.write(bytes, 0, c); in1.close(); out1.close(); return true; } catch (Exception e) { e.printStackTrace(); System.out.println("Error!"); return false; } } | public static void main(String[] args) { FileInputStream fr = null; FileOutputStream fw = null; BufferedInputStream br = null; BufferedOutputStream bw = null; try { fr = new FileInputStream("D:/5.xls"); fw = new FileOutputStream("c:/Dxw.java"); br = new BufferedInputStream(fr); bw = new BufferedOutputStream(fw); int read = br.read(); while (read != -1) { bw.write(read); read = br.read(); } } catch (IOException e) { e.printStackTrace(); } finally { if (br != null) { try { br.close(); } catch (IOException e) { e.printStackTrace(); } } if (bw != null) { try { bw.close(); } catch (IOException e) { e.printStackTrace(); } } } } | 17,135 |
0 | private static void salvarArtista(Artista artista) throws Exception { Connection conn = null; PreparedStatement ps = null; try { conn = C3P0Pool.getConnection(); String sql = "insert into artista VALUES (?,?,?,?,?,?,?)"; ps = conn.prepareStatement(sql); ps.setInt(1, artista.getNumeroInscricao()); ps.setString(2, artista.getNome()); ps.setBoolean(3, artista.isSexo()); ps.setString(4, artista.getEmail()); ps.setString(5, artista.getObs()); ps.setString(6, artista.getTelefone()); ps.setNull(7, Types.INTEGER); ps.executeUpdate(); salvarEndereco(conn, ps, artista); conn.commit(); } catch (Exception e) { if (conn != null) conn.rollback(); throw e; } finally { close(conn, ps); } } | public static long copyFile(File source, File target) throws IOException { FileInputStream fileInputStream = null; FileOutputStream fileOutputStream = null; try { fileInputStream = new FileInputStream(source); fileOutputStream = new FileOutputStream(target); FileChannel in = fileInputStream.getChannel(); FileChannel out = fileOutputStream.getChannel(); return out.transferFrom(in, 0, source.length()); } finally { if (fileInputStream != null) fileInputStream.close(); if (fileOutputStream != null) fileOutputStream.close(); } } | 17,136 |
1 | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | public static void copy(String from_name, String to_name) throws IOException { File from_file = new File(from_name); File to_file = new File(to_name); if (!from_file.exists()) abort("FileCopy: no such source file: " + from_name); if (!from_file.isFile()) abort("FileCopy: can't copy directory: " + from_name); if (!from_file.canRead()) abort("FileCopy: source file is unreadable: " + from_name); if (to_file.isDirectory()) to_file = new File(to_file, from_file.getName()); String parent = to_file.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) abort("FileCopy: destination directory doesn't exist: " + parent); if (dir.isFile()) abort("FileCopy: destination is not a directory: " + parent); if (!dir.canWrite()) abort("FileCopy: destination directory is unwriteable: " + parent); FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(from_file); to = new FileOutputStream(to_file); byte[] buffer = new byte[4096]; int bytes_read; while ((bytes_read = from.read(buffer)) != -1) to.write(buffer, 0, bytes_read); } finally { if (from != null) try { from.close(); } catch (IOException e) { ; } if (to != null) try { to.close(); } catch (IOException e) { ; } } } | 17,137 |
1 | public static void doVersionCheck(View view) { view.showWaitCursor(); try { URL url = new URL(jEdit.getProperty("version-check.url")); InputStream in = url.openStream(); BufferedReader bin = new BufferedReader(new InputStreamReader(in)); String line; String develBuild = null; String stableBuild = null; while ((line = bin.readLine()) != null) { if (line.startsWith(".build")) develBuild = line.substring(6).trim(); else if (line.startsWith(".stablebuild")) stableBuild = line.substring(12).trim(); } bin.close(); if (develBuild != null && stableBuild != null) { doVersionCheck(view, stableBuild, develBuild); } } catch (IOException e) { String[] args = { jEdit.getProperty("version-check.url"), e.toString() }; GUIUtilities.error(view, "read-error", args); } view.hideWaitCursor(); } | public static void doVersionCheck(View view) { view.showWaitCursor(); try { URL url = new URL(jEdit.getProperty("version-check.url")); InputStream in = url.openStream(); BufferedReader bin = new BufferedReader(new InputStreamReader(in)); String line; String develBuild = null; String stableBuild = null; while ((line = bin.readLine()) != null) { if (line.startsWith(".build")) develBuild = line.substring(6).trim(); else if (line.startsWith(".stablebuild")) stableBuild = line.substring(12).trim(); } bin.close(); if (develBuild != null && stableBuild != null) { doVersionCheck(view, stableBuild, develBuild); } } catch (IOException e) { String[] args = { jEdit.getProperty("version-check.url"), e.toString() }; GUIUtilities.error(view, "read-error", args); } view.hideWaitCursor(); } | 17,138 |
0 | @Override public void run() { Application.getController().notifyProgressStarted(); Application.getController().notifyProgressUpdated(-1); for (int f = 0; f < fileList.size(); f++) { File archive = fileList.get(f); String arname = archive.getName(); String arsuf = arname.substring(arname.lastIndexOf('.'), arname.length()); Algorithm alg = null; Algorithm algs[] = algFactory.getAlgorithms(); for (int i = 0; i < algs.length; i++) { if (algs[i].getSuffix().equalsIgnoreCase(arsuf)) { alg = algs[i]; break; } } if (alg == null) { Application.getController().displayError(bundle.getString("unknown_alg_title"), bundle.getString("unknown_alg_text")); return; } currentAlgorithm = alg; if (!alg.initDecrypt(password)) { Application.getController().displayError(bundle.getString("dec_init_fail_title"), bundle.getString("dec_init_fail_text")); return; } try { ZipArchiveInputStream zis = null; InputStream is = null; if (EncryptionMode.getBestEncryptionMode(alg.getEncryptionMode()) == EncryptionMode.MODE_STREAM) { is = alg.getDecryptionStream(new FileInputStream(archive)); if (is == null) { Application.getController().displayError(bundle.getString("dec_init_fail_title"), bundle.getString("dec_init_fail_text")); return; } } else if (EncryptionMode.getBestEncryptionMode(alg.getEncryptionMode()) == EncryptionMode.MODE_BLOCK) { is = new BlockCipherInputStream(new FileInputStream(archive), alg); if (is == null) { Application.getController().displayError(bundle.getString("dec_init_fail_title"), bundle.getString("dec_init_fail_text")); return; } } zis = new ZipArchiveInputStream(is); if (zis == null) { Application.getController().displayError(bundle.getString("dec_init_fail_title"), bundle.getString("dec_init_fail_text")); return; } File outputDir = getTargetDirectory(); if (outputDir == null) { return; } if (!outputDir.exists()) { if (!outputDir.mkdir()) { Application.getController().displayError(bundle.getString("output_dir_fail_title"), outputDir.getAbsolutePath() + " " + bundle.getString("output_dir_fail_text")); return; } } ZipArchiveEntry zae = null; boolean gotEntries = false; while ((zae = zis.getNextZipEntry()) != null) { gotEntries = true; File out = new File(outputDir, zae.getName()); if (out.exists()) { if (!mayOverwrite(out)) { continue; } } Application.getController().displayVerbose("writing to file: " + out.getAbsolutePath()); if (!out.getParentFile().exists()) { out.getParentFile().mkdirs(); } if (zae.isDirectory()) { out.mkdir(); continue; } FileOutputStream os = new FileOutputStream(out); long length = zae.getCompressedSize(), counter = 0; Application.getController().displayVerbose("Length of zip entry " + zae.getName() + " is " + length + "b"); byte[] buffer = new byte[16384]; MessageDigest md = MessageDigest.getInstance("SHA-1"); DigestInputStream in = new DigestInputStream(zis, md); while ((counter = in.read(buffer)) > 0) { if (Thread.currentThread().isInterrupted()) { os.close(); zis.close(); Application.getController().notifyProgressFinished(); resetModel(true); return; } os.write(buffer, 0, (int) counter); } os.close(); if (zae.getComment() != null && zae.getComment().length() > 0) { if (Arrays.equals(md.digest(), new Base64().decode(zae.getComment()))) { Application.getController().displayVerbose("Hash of " + zae.getName() + ": " + new Base64().encodeToString(md.digest())); Application.getController().displayError("Hash Error", "The stored hash of the original file and the hash of the decrypted data do not match. Normally, this means that your data has been manipulated/damaged, but it can also happen if your Java Runtime has a bug in his hash functions.\nIT IS VERY IMPORTANT TO CHECK THE INTEGRITY OF YOUR DECRYPTED DATA!"); } else { Application.getController().displayVerbose("the hash of " + zae.getName() + " was verified succesfully"); } } } if (!gotEntries) { Application.getController().displayError(bundle.getString("error_no_entries_title"), bundle.getString("error_no_entries_text")); outputDir.delete(); } zis.close(); resetModel(false); } catch (FileNotFoundException ex) { Application.getController().displayError(bundle.getString("error_file_not_exist"), ex.getLocalizedMessage()); } catch (IOException ex) { Application.getController().displayError(bundle.getString("error_generic_io"), ex.getLocalizedMessage()); } catch (NoSuchAlgorithmException ex) { Application.getController().displayError(bundle.getString("unknown_alg_text"), ex.getLocalizedMessage()); } } Application.getController().notifyProgressFinished(); resetModel(true); } | private MimeTypes() { try { final URL url = RES.getURL("types"); final InputStream is = url.openStream(); final BufferedReader br = new BufferedReader(new InputStreamReader(is)); String line = br.readLine(); while (line != null) { line = line.trim(); final int p = line.indexOf('#'); if (p >= 0) { line = line.substring(0, p).trim(); } if (line.length() > 0) { final StringTokenizer st = new StringTokenizer(line, " \t"); if (st.countTokens() > 1) { final String mime = st.nextToken(); while (st.hasMoreTokens()) { extnMap.put(st.nextToken(), mime); } } } line = br.readLine(); } br.close(); } catch (IOException e) { e.printStackTrace(); } canParse.add(TEXT_HTML); canParse.add(TEXT_CSS); } | 17,139 |
0 | public static String getTitleFromURLFast(String p_url) throws Exception { URL x_url = new URL(p_url); URLConnection x_conn = x_url.openConnection(); InputStreamReader x_is_reader = new InputStreamReader(x_conn.getInputStream()); BufferedReader x_reader = new BufferedReader(x_is_reader); String x_line = null; String x_title_line = null; String x_lc_line = null; int x_title = -1; int x_end = -1; while ((x_line = x_reader.readLine()) != null) { x_lc_line = x_line.toLowerCase(); x_title = x_lc_line.indexOf("<title"); if (x_title != -1) { x_end = x_lc_line.indexOf("</title>"); x_title_line = x_line.substring((x_title + 7), (x_end == -1 ? x_line.length() : x_end)); break; } } return x_title_line; } | public BasePolicy(String flaskPath) throws Exception { SWIGTYPE_p_p_policy p_p_pol = apol.new_policy_t_p_p(); if (!flaskPath.endsWith("/")) flaskPath += "/"; File tmpPolConf = File.createTempFile("tmpBasePolicy", ".conf"); BufferedWriter tmpPolFile = new BufferedWriter(new FileWriter(tmpPolConf)); BufferedReader secClassFile = new BufferedReader(new FileReader(flaskPath + "security_classes")); int bufSize = 1024; char[] buffer = new char[bufSize]; int read; while ((read = secClassFile.read(buffer)) > 0) { tmpPolFile.write(buffer, 0, read); } secClassFile.close(); BufferedReader sidsFile = new BufferedReader(new FileReader(flaskPath + "initial_sids")); while ((read = sidsFile.read(buffer)) > 0) { tmpPolFile.write(buffer, 0, read); } sidsFile.close(); BufferedReader axxVecFile = new BufferedReader(new FileReader(flaskPath + "access_vectors")); while ((read = axxVecFile.read(buffer)) > 0) { tmpPolFile.write(buffer, 0, read); } axxVecFile.close(); tmpPolFile.write("attribute ricka; \ntype rick_t; \nrole rick_r types rick_t; \nuser rick_u roles rick_r;\nsid kernel rick_u:rick_r:rick_t\nfs_use_xattr ext3 rick_u:rick_r:rick_t;\ngenfscon proc / rick_u:rick_r:rick_t\n"); tmpPolFile.flush(); tmpPolFile.close(); if (apol.open_policy(tmpPolConf.getAbsolutePath(), p_p_pol) == 0) { Policy = apol.policy_t_p_p_value(p_p_pol); if (Policy == null) { throw new Exception("Failed to allocate memory for policy_t struct."); } tmpPolConf.delete(); } else { throw new IOException("Failed to open/parse base policy file: " + tmpPolConf.getAbsolutePath()); } } | 17,140 |
0 | public static void main(String[] args) throws Exception { String linesep = System.getProperty("line.separator"); FileOutputStream fos = new FileOutputStream(new File("lib-licenses.txt")); fos.write(new String("JCP contains the following libraries. Please read this for comments on copyright etc." + linesep + linesep).getBytes()); fos.write(new String("Chemistry Development Kit, master version as of " + new Date().toString() + " (http://cdk.sf.net)" + linesep).getBytes()); fos.write(new String("Copyright 1997-2009 The CDK Development Team" + linesep).getBytes()); fos.write(new String("License: LGPL v2 (http://www.gnu.org/licenses/old-licenses/gpl-2.0.html)" + linesep).getBytes()); fos.write(new String("Download: https://sourceforge.net/projects/cdk/files/" + linesep).getBytes()); fos.write(new String("Source available at: http://sourceforge.net/scm/?type=git&group_id=20024" + linesep + linesep).getBytes()); File[] files = new File(args[0]).listFiles(new JarFileFilter()); for (int i = 0; i < files.length; i++) { if (new File(files[i].getPath() + ".meta").exists()) { Map<String, Map<String, String>> metaprops = readProperties(new File(files[i].getPath() + ".meta")); Iterator<String> itsect = metaprops.keySet().iterator(); while (itsect.hasNext()) { String section = itsect.next(); fos.write(new String(metaprops.get(section).get("Library") + " " + metaprops.get(section).get("Version") + " (" + metaprops.get(section).get("Homepage") + ")" + linesep).getBytes()); fos.write(new String("Copyright " + metaprops.get(section).get("Copyright") + linesep).getBytes()); fos.write(new String("License: " + metaprops.get(section).get("License") + " (" + metaprops.get(section).get("LicenseURL") + ")" + linesep).getBytes()); fos.write(new String("Download: " + metaprops.get(section).get("Download") + linesep).getBytes()); fos.write(new String("Source available at: " + metaprops.get(section).get("SourceCode") + linesep + linesep).getBytes()); } } if (new File(files[i].getPath() + ".extra").exists()) { fos.write(new String("The author says:" + linesep).getBytes()); FileInputStream in = new FileInputStream(new File(files[i].getPath() + ".extra")); int len; byte[] buf = new byte[1024]; while ((len = in.read(buf)) > 0) { fos.write(buf, 0, len); } } fos.write(linesep.getBytes()); } fos.close(); } | public static String MD5(String source) { logger.info(source); String result = null; try { MessageDigest digest = MessageDigest.getInstance("MD5"); digest.update(source.getBytes()); byte[] bytes = digest.digest(); result = EncodeUtils.hexEncode(bytes); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } logger.info(result); return result; } | 17,141 |
1 | void IconmenuItem5_actionPerformed(ActionEvent e) { JFileChooser jFileChooser1 = new JFileChooser(); String separator = ""; if (getPath() != null && !getPath().equals("")) { jFileChooser1.setCurrentDirectory(new File(getPath())); jFileChooser1.setSelectedFile(new File(getPath())); } if (JFileChooser.APPROVE_OPTION == jFileChooser1.showOpenDialog(this.getFatherFrame())) { setPath(jFileChooser1.getSelectedFile().getPath()); separator = jFileChooser1.getSelectedFile().separator; File dirImg = new File("." + separator + "images"); if (!dirImg.exists()) { dirImg.mkdir(); } int index = getPath().lastIndexOf(separator); String imgName = getPath().substring(index); String newPath = dirImg + imgName; try { File inputFile = new File(getPath()); File outputFile = new File(newPath); if (!inputFile.getCanonicalPath().equals(outputFile.getCanonicalPath())) { FileInputStream in = new FileInputStream(inputFile); FileOutputStream out = new FileOutputStream(outputFile); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); } } catch (Exception ex) { ex.printStackTrace(); LogHandler.log(ex.getMessage(), Level.INFO, "LOG_MSG", isLoggingEnabled()); JOptionPane.showMessageDialog(null, ex.getMessage().substring(0, Math.min(ex.getMessage().length(), getFatherPanel().MAX_DIALOG_MSG_SZ)) + "-" + getClass(), "", JOptionPane.ERROR_MESSAGE); } setPath(newPath); if (getDefaultPath() == null || getDefaultPath().equals("")) { String msgString = "E' stata selezionata un'immagine da associare all'IconShape, ma non e' " + "stata selezionata ancora nessun'immagine di default. Imposto quella scelta anche come " + "immagine di default?"; if (JOptionPane.showConfirmDialog(null, msgString.substring(0, Math.min(msgString.length(), getFatherPanel().MAX_DIALOG_MSG_SZ)), "choose one", JOptionPane.YES_NO_OPTION) == JOptionPane.YES_OPTION) { setDefaultPath(newPath); createDefaultImage(); } } createImage(); } } | public static InputStream gunzip(final InputStream inputStream) throws IOException { Assert.notNull(inputStream, "inputStream"); GZIPInputStream gzipInputStream = new GZIPInputStream(inputStream); InputOutputStream inputOutputStream = new InputOutputStream(); IOUtils.copy(gzipInputStream, inputOutputStream); return inputOutputStream.getInputStream(); } | 17,142 |
0 | @Override protected Map<String, Definition> loadDefinitionsFromURL(URL url) { Map<String, Definition> defsMap = null; try { URLConnection connection = url.openConnection(); connection.connect(); lastModifiedDates.put(url.toExternalForm(), connection.getLastModified()); defsMap = reader.read(connection.getInputStream()); } catch (IOException e) { if (log.isDebugEnabled()) { log.debug("File " + null + " not found, continue [" + e.getMessage() + "]"); } } return defsMap; } | private Object query(String json) throws IOException, ParseException { String envelope = "{\"qname1\":{\"query\":" + json + "}}"; String urlStr = MQLREADURL + "?queries=" + URLEncoder.encode(envelope, "UTF-8"); if (isDebugging()) { if (echoRequest) System.err.println("Sending:" + envelope); } URL url = new URL(urlStr); URLConnection con = url.openConnection(); con.setRequestProperty("Cookie", COOKIE + "=" + "\"" + getMetawebCookie() + "\""); con.connect(); InputStream in = con.getInputStream(); Object item = new JSONParser(echoRequest ? new EchoReader(in) : in).object(); in.close(); String code = getString(item, "code"); if (!"/api/status/ok".equals(code)) { throw new IOException("Bad code " + item); } code = getString(item, "qname1.code"); if (!"/api/status/ok".equals(code)) { throw new IOException("Bad code " + item); } return item; } | 17,143 |
1 | public static String SHA1(String text) throws NoSuchAlgorithmException { MessageDigest md = MessageDigest.getInstance("SHA-1"); md.update(text.getBytes()); byte byteData[] = md.digest(); StringBuffer sb = new StringBuffer(); for (int i = 0; i < byteData.length; i++) { sb.append(Integer.toString((byteData[i] & 0xff) + 0x100, 16).substring(1)); } StringBuffer hexString = new StringBuffer(); for (int i = 0; i < byteData.length; i++) { String hex = Integer.toHexString(0xff & byteData[i]); if (hex.length() == 1) hexString.append('0'); hexString.append(hex); } return hexString.toString(); } | private String getEncryptedPassword() { String encrypted; char[] pwd = password.getPassword(); try { MessageDigest md = MessageDigest.getInstance("SHA-1"); md.update(new String(pwd).getBytes("UTF-8")); byte[] digested = md.digest(); encrypted = new String(Base64Coder.encode(digested)); } catch (Exception e) { encrypted = new String(pwd); } for (int i = 0; i < pwd.length; i++) pwd[i] = 0; return encrypted; } | 17,144 |
0 | public static String getContent(String url, String code) { HttpURLConnection connect = null; try { URL myurl = new URL(url); connect = (HttpURLConnection) myurl.openConnection(); connect.setConnectTimeout(30000); connect.setReadTimeout(30000); connect.setRequestProperty("User-Agent", "Mozilla/4.0 (compatible; MSIE 7.0; Windows NT 5.1; GTB5; .NET CLR 1.1.4322; .NET CLR 2.0.50727; Alexa Toolbar; MAXTHON 2.0)"); return StringUtil.convertStreamToString(connect.getInputStream(), code); } catch (Exception e) { slogger.warn(e.getMessage()); } finally { if (connect != null) { connect.disconnect(); } } slogger.warn("这个没找到" + url); return null; } | public void doGet(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException { HttpSession session = request.getSession(false); if (session == null) { log.warn("HttpProxyServlet: no session"); response.setStatus(404); return; } User user = (User) session.getAttribute("user"); if (user == null) { log.warn("HttpProxyServlet: user not logged in"); response.setStatus(404); return; } String target = null; if (request.getPathInfo() != null && !request.getPathInfo().equals("")) { target = "http:/" + request.getPathInfo() + "?" + request.getQueryString(); log.info("HttpProxyServlet: target=" + target); } else { log.warn("HttpProxyServlet: missing pathInfo"); response.setStatus(404); return; } InputStream is = null; ServletOutputStream out = null; try { URL url = new URL(target); URLConnection uc = url.openConnection(); response.setContentType(uc.getContentType()); is = uc.getInputStream(); out = response.getOutputStream(); byte[] buf = new byte[4096]; int bytesRead; while ((bytesRead = is.read(buf)) != -1) { out.write(buf, 0, bytesRead); } } catch (MalformedURLException e) { log.warn("HttpProxyServlet: malformed URL"); response.setStatus(404); } catch (IOException e) { log.warn("HttpProxyServlet: I/O exception"); response.setStatus(404); } finally { if (is != null) { is.close(); } if (out != null) { out.close(); } } } | 17,145 |
0 | private void refreshJOGL(final File installDir) { try { Class subAppletClass = Class.forName(subAppletClassName); } catch (ClassNotFoundException cnfe) { displayError("Start failed : class not found : " + subAppletClassName); } if (!installDir.exists()) { installDir.mkdirs(); } String libURLName = nativeLibsJarNames[osType]; URL nativeLibURL; URLConnection urlConnection; String path = getCodeBase().toExternalForm() + libURLName; try { nativeLibURL = new URL(path); urlConnection = nativeLibURL.openConnection(); } catch (Exception e) { e.printStackTrace(); displayError("Couldn't access the native lib URL : " + path); return; } long lastModified = urlConnection.getLastModified(); File localNativeFile = new File(installDir, nativeLibsFileNames[osType]); boolean needsRefresh = (!localNativeFile.exists()) || localNativeFile.lastModified() != lastModified; if (needsRefresh) { displayMessage("Updating local version of the native libraries"); File localJarFile = new File(installDir, nativeLibsJarNames[osType]); try { saveNativesJarLocally(localJarFile, urlConnection); } catch (IOException ioe) { ioe.printStackTrace(); displayError("Unable to install the native file locally"); return; } InputStream is = null; BufferedOutputStream out = null; try { JarFile jf = new JarFile(localJarFile); JarEntry nativeLibEntry = findNativeEntry(jf); if (nativeLibEntry == null) { displayError("native library not found in jar file"); } else { is = jf.getInputStream(nativeLibEntry); int totalLength = (int) nativeLibEntry.getSize(); try { out = new BufferedOutputStream(new FileOutputStream(localNativeFile)); } catch (FileNotFoundException ex) { ex.printStackTrace(); return; } byte[] buffer = new byte[1024]; int sum = 0; int len; try { while ((len = is.read(buffer)) > 0) { out.write(buffer, 0, len); sum += len; int percent = (100 * sum / totalLength); displayMessage("Installing native files"); progressBar.setValue(percent); } displayMessage("Download complete"); } catch (IOException ioe) { ioe.printStackTrace(); displayMessage("An error has occured during native library download"); return; } finally { if (out != null) { try { out.close(); } catch (IOException ignore) { } } } if (checkNativeCertificates(nativeLibEntry.getCertificates())) { localNativeFile.setLastModified(lastModified); loadNativesAndStart(localNativeFile); } else { displayError("The native librairies aren't properly signed"); } } } catch (IOException e) { e.printStackTrace(); } finally { if (is != null) { try { is.close(); } catch (IOException ignore) { } } } } else { loadNativesAndStart(localNativeFile); } } | public String loadURLString(java.net.URL url) { try { BufferedReader br = new BufferedReader(new InputStreamReader(url.openStream())); StringBuffer buf = new StringBuffer(); String s = ""; while (br.ready() && s != null) { s = br.readLine(); if (s != null) { buf.append(s); buf.append("\n"); } } return buf.toString(); } catch (IOException ex) { return ""; } catch (NullPointerException npe) { return ""; } } | 17,146 |
0 | private static void dumpUrl(URL url) throws IOException { BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); String s = reader.readLine(); while (s != null) { System.out.println(s); s = reader.readLine(); } reader.close(); } | public void deploy(String baseDir, boolean clean) throws IOException { try { ftp.connect(hostname, port); log.debug("Connected to: " + hostname + ":" + port); ftp.login(username, password); int reply = ftp.getReplyCode(); if (!FTPReply.isPositiveCompletion(reply)) { throw new IOException("Error logging onto ftp server. FTPClient returned code: " + reply); } log.debug("Logged in"); ftp.setFileType(FTPClient.BINARY_FILE_TYPE); if (clean) { deleteDir(remoteDir); } storeFolder(baseDir, remoteDir); } finally { ftp.disconnect(); } } | 17,147 |
0 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | private static URL handleRedirectUrl(URL url) { try { URLConnection cn = url.openConnection(); Utils.setHeader(cn); if (!(cn instanceof HttpURLConnection)) { return url; } HttpURLConnection hcn = (HttpURLConnection) cn; hcn.setInstanceFollowRedirects(false); int resCode = hcn.getResponseCode(); if (resCode == 200) { System.out.println("URL: " + url); return url; } String location = hcn.getHeaderField("Location"); hcn.disconnect(); return handleRedirectUrl(new URL(location.replace(" ", "%20"))); } catch (IOException e) { e.printStackTrace(); } return url; } | 17,148 |
1 | public void test() throws Exception { StringDocument doc = new StringDocument("Test", "UTF-8"); doc.open(); try { assertEquals("UTF-8", doc.getCharacterEncoding()); assertEquals("Test", doc.getText()); InputStream input = doc.getInputStream(); StringWriter writer = new StringWriter(); try { IOUtils.copy(input, writer, "UTF-8"); } finally { writer.close(); } assertEquals("Test", writer.toString()); } finally { doc.close(); } } | public void gzip(File from, File to) { OutputStream out_zip = null; ArchiveOutputStream os = null; try { try { out_zip = new FileOutputStream(to); os = new ArchiveStreamFactory().createArchiveOutputStream("zip", out_zip); os.putArchiveEntry(new ZipArchiveEntry(from.getName())); IOUtils.copy(new FileInputStream(from), os); os.closeArchiveEntry(); } finally { if (os != null) { os.close(); } } out_zip.close(); } catch (IOException ex) { fatal("IOException", ex); } catch (ArchiveException ex) { fatal("ArchiveException", ex); } } | 17,149 |
1 | public void init(String password) { try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(password.getBytes("UTF-8"), 0, password.length()); byte[] rawKey = md.digest(); skeySpec = new SecretKeySpec(rawKey, "AES"); ivSpec = new IvParameterSpec(rawKey); cipher = Cipher.getInstance("AES/CBC/PKCS5Padding"); } catch (UnsupportedEncodingException ex) { Logger.getLogger(AES.class.getName()).log(Level.SEVERE, null, ex); } catch (NoSuchPaddingException ex) { Logger.getLogger(AES.class.getName()).log(Level.SEVERE, null, ex); } catch (NoSuchAlgorithmException ex) { Logger.getLogger(AES.class.getName()).log(Level.SEVERE, null, ex); } } | public static String openldapDigestMd5(final String password) { String base64; try { MessageDigest digest = MessageDigest.getInstance("MD5"); digest.update(password.getBytes()); base64 = fr.cnes.sitools.util.Base64.encodeBytes(digest.digest()); } catch (NoSuchAlgorithmException e) { throw new RuntimeException(e); } return OPENLDAP_MD5_PREFIX + base64; } | 17,150 |
0 | public void serveResource(HTTPResource resource, HttpServletRequest request, HttpServletResponse response) throws IOException { JavaScriptResource jsr = (JavaScriptResource) resource; response.setContentType("text/javascript"); if (jsr.getScriptText() != null) { PrintWriter pw = response.getWriter(); pw.println(jsr.getScriptText()); } else if (jsr.getResourceName() != null) { URL url = ClassLoaderUtil.getResource(jsr.getResourceName()); IOUtil.copyData(response.getOutputStream(), url.openStream()); } else { throw new IOException("No Javascript to Serve"); } } | public CacheServiceFactoryImpl() { @SuppressWarnings("static-access") URL url = this.getClass().getClassLoader().getResource("mwt/xml/xdbforms/configuration/ehcache.xml"); InputStream is; try { is = url.openStream(); cacheManager = CacheManager.create(is); } catch (IOException ex) { System.err.println("NOn riesco ad aprire il file di configurazione ehcache.xml"); } } | 17,151 |
1 | private BoardPattern[] getBoardPatterns() { Resource[] resources = boardManager.getResources("boards"); BoardPattern[] boardPatterns = new BoardPattern[resources.length]; for (int i = 0; i < resources.length; i++) boardPatterns[i] = (BoardPattern) resources[i]; for (int i = 0; i < resources.length; i++) { for (int j = 0; j < resources.length - (i + 1); j++) { String name1 = boardPatterns[j].getName(); String name2 = boardPatterns[j + 1].getName(); if (name1.compareTo(name2) > 0) { BoardPattern tmp = boardPatterns[j]; boardPatterns[j] = boardPatterns[j + 1]; boardPatterns[j + 1] = tmp; } } } return boardPatterns; } | private void bubbleSort(int[] mas) { boolean t = true; int temp = 0; while (t) { t = false; for (int i = 0; i < mas.length - 1; i++) { if (mas[i] > mas[i + 1]) { temp = mas[i]; mas[i] = mas[i + 1]; mas[i + 1] = temp; t = true; } } } } | 17,152 |
1 | public void compressImage(InputStream input, OutputStream output, DjatokaEncodeParam params) throws DjatokaException { if (params == null) params = new DjatokaEncodeParam(); File inputFile = null; try { inputFile = File.createTempFile("tmp", ".tif"); IOUtils.copyStream(input, new FileOutputStream(inputFile)); if (params.getLevels() == 0) { ImageRecord dim = ImageRecordUtils.getImageDimensions(inputFile.getAbsolutePath()); params.setLevels(ImageProcessingUtils.getLevelCount(dim.getWidth(), dim.getHeight())); dim = null; } } catch (IOException e1) { logger.error("Unexpected file format; expecting uncompressed TIFF", e1); throw new DjatokaException("Unexpected file format; expecting uncompressed TIFF"); } String out = STDOUT; File winOut = null; if (isWindows) { try { winOut = File.createTempFile("pipe_", ".jp2"); } catch (IOException e) { logger.error(e, e); throw new DjatokaException(e); } out = winOut.getAbsolutePath(); } String command = getKduCompressCommand(inputFile.getAbsolutePath(), out, params); logger.debug("compressCommand: " + command); Runtime rt = Runtime.getRuntime(); try { final Process process = rt.exec(command, envParams, new File(env)); if (out.equals(STDOUT)) { IOUtils.copyStream(process.getInputStream(), output); } else if (isWindows) { FileInputStream fis = new FileInputStream(out); IOUtils.copyStream(fis, output); fis.close(); } process.waitFor(); if (process != null) { String errorCheck = null; try { errorCheck = new String(IOUtils.getByteArray(process.getErrorStream())); } catch (Exception e1) { logger.error(e1, e1); } process.getInputStream().close(); process.getOutputStream().close(); process.getErrorStream().close(); process.destroy(); if (errorCheck != null) throw new DjatokaException(errorCheck); } } catch (IOException e) { logger.error(e, e); throw new DjatokaException(e); } catch (InterruptedException e) { logger.error(e, e); throw new DjatokaException(e); } if (inputFile != null) inputFile.delete(); if (winOut != null) winOut.delete(); } | public static boolean copyFile(File outFile, File inFile) { InputStream inStream = null; OutputStream outStream = null; try { if (outFile.createNewFile()) { inStream = new FileInputStream(inFile); outStream = new FileOutputStream(outFile); byte[] buffer = new byte[1024]; int length; while ((length = inStream.read(buffer)) > 0) outStream.write(buffer, 0, length); inStream.close(); outStream.close(); } else return false; } catch (IOException iox) { iox.printStackTrace(); return false; } return true; } | 17,153 |
0 | public static void copyAFile(final String entree, final String sortie) { FileChannel in = null; FileChannel out = null; try { in = new FileInputStream(entree).getChannel(); out = new FileOutputStream(sortie).getChannel(); in.transferTo(0, in.size(), out); } catch (Exception e) { e.printStackTrace(); } finally { if (in != null) { try { in.close(); } catch (IOException e) { e.printStackTrace(); } } if (out != null) { try { out.close(); } catch (IOException e) { e.printStackTrace(); } } } } | @Override public synchronized void deleteHardDiskStatistics(String contextName, String path, Date dateFrom, Date dateTo) throws DatabaseException { final Connection connection = this.getConnection(); try { connection.setAutoCommit(false); String queryString = "DELETE " + this.getHardDiskInvocationsSchemaAndTableName() + " FROM " + this.getHardDiskInvocationsSchemaAndTableName() + " INNER JOIN " + this.getHardDiskElementsSchemaAndTableName() + " ON " + this.getHardDiskElementsSchemaAndTableName() + ".element_id = " + this.getHardDiskInvocationsSchemaAndTableName() + ".element_id WHERE "; if (contextName != null) { queryString = queryString + " context_name LIKE ? AND "; } if (path != null) { queryString = queryString + " path LIKE ? AND "; } if (dateFrom != null) { queryString = queryString + " start_timestamp >= ? AND "; } if (dateTo != null) { queryString = queryString + " start_timestamp <= ? AND "; } queryString = DefaultDatabaseHandler.removeOrphanWhereAndAndFromSelect(queryString); final PreparedStatement preparedStatement = DebugPreparedStatement.prepareStatement(connection, queryString); int indexCounter = 1; if (contextName != null) { preparedStatement.setString(indexCounter, contextName); indexCounter = indexCounter + 1; } if (path != null) { preparedStatement.setString(indexCounter, path); indexCounter = indexCounter + 1; } if (dateFrom != null) { preparedStatement.setTimestamp(indexCounter, new Timestamp(dateFrom.getTime())); indexCounter = indexCounter + 1; } if (dateTo != null) { preparedStatement.setTimestamp(indexCounter, new Timestamp(dateTo.getTime())); indexCounter = indexCounter + 1; } preparedStatement.executeUpdate(); preparedStatement.close(); connection.commit(); } catch (final SQLException e) { try { connection.rollback(); } catch (final SQLException ex) { JeeObserverServerContext.logger.log(Level.SEVERE, "Transaction rollback error.", ex); } JeeObserverServerContext.logger.log(Level.SEVERE, e.getMessage()); throw new DatabaseException("Error deleting disk statistics.", e); } finally { this.releaseConnection(connection); } } | 17,154 |
1 | private static void copy(File source, File target) throws IOException { InputStream is = null; OutputStream os = null; try { is = new BufferedInputStream(new FileInputStream(source)); os = new BufferedOutputStream(new FileOutputStream(target)); int b; while ((b = is.read()) > -1) os.write(b); } finally { try { if (is != null) is.close(); } catch (IOException ignore) { } try { if (os != null) os.close(); } catch (IOException ignore) { } } } | public byte[] read(IFile input) { InputStream contents = null; try { ByteArrayOutputStream baos = new ByteArrayOutputStream(); contents = input.getContents(); IOUtils.copy(contents, baos); return baos.toByteArray(); } catch (IOException e) { Activator.logUnexpected(null, e); } catch (CoreException e) { Activator.logUnexpected(null, e); } finally { IOUtils.closeQuietly(contents); } return null; } | 17,155 |
0 | public static void main(String[] args) { File container = new File(ArchiveFeature.class.getProtectionDomain().getCodeSource().getLocation().toURI()); if (container == null) { throw new RuntimeException("this use-case isn't being invoked from the executable jar"); } JarFile jarFile = new JarFile(container); String artifactName = PROJECT_DIST_ARCHIVE + ".tar.gz"; File artifactFile = new File(".", artifactName); ZipEntry artifactEntry = jarFile.getEntry(artifactName); InputStream source = jarFile.getInputStream(artifactEntry); try { FileOutputStream dest = new FileOutputStream(artifactFile); try { IOUtils.copy(source, dest); } finally { IOUtils.closeQuietly(dest); } } finally { IOUtils.closeQuietly(source); } Project project = new Project(); project.setName("project"); project.init(); Target target = new Target(); target.setName("target"); project.addTarget(target); project.addBuildListener(new Log4jListener()); Untar untar = new Untar(); untar.setTaskName("untar"); untar.setSrc(artifactFile); untar.setDest(new File(".")); Untar.UntarCompressionMethod method = new Untar.UntarCompressionMethod(); method.setValue("gzip"); untar.setCompression(method); untar.setProject(project); untar.setOwningTarget(target); target.addTask(untar); untar.execute(); } | private void getRandomGUID(boolean secure) { MessageDigest md5 = null; StringBuffer sbValueBeforeMD5 = new StringBuffer(); try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { } try { long time = System.currentTimeMillis(); long rand = 0; if (secure) { rand = mySecureRand.nextLong(); } else { rand = myRand.nextLong(); } sbValueBeforeMD5.append(s_id); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(time)); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(rand)); valueBeforeMD5 = sbValueBeforeMD5.toString(); md5.update(valueBeforeMD5.getBytes()); byte[] array = md5.digest(); StringBuffer sb = new StringBuffer(); for (int j = 0; j < array.length; ++j) { int b = array[j] & 0xFF; if (b < 0x10) sb.append('0'); sb.append(Integer.toHexString(b)); } valueAfterMD5 = sb.toString(); } catch (Exception e) { System.out.println("Error:" + e); } } | 17,156 |
1 | public void actionPerformed(java.awt.event.ActionEvent e) { JFileChooser fc = new JFileChooser(); fc.addChoosableFileFilter(new ImageFilter()); fc.setAccessory(new ImagePreview(fc)); int returnVal = fc.showDialog(AdministracionResorces.this, Messages.getString("gui.AdministracionResorces.8")); if (returnVal == JFileChooser.APPROVE_OPTION) { File file = fc.getSelectedFile(); String rutaGlobal = System.getProperty("user.dir") + "/" + rutaDatos + "imagenes/" + file.getName(); String rutaRelativa = rutaDatos + "imagenes/" + file.getName(); try { FileInputStream fis = new FileInputStream(file); FileOutputStream fos = new FileOutputStream(rutaGlobal, true); FileChannel canalFuente = fis.getChannel(); FileChannel canalDestino = fos.getChannel(); canalFuente.transferTo(0, canalFuente.size(), canalDestino); fis.close(); fos.close(); imagen.setImagenURL(rutaRelativa); gui.getEntrenamientoIzquierdaLabel().setIcon(gui.getProcesadorDatos().escalaImageIcon(((Imagen) gui.getComboBoxImagenesIzquierda().getSelectedItem()).getImagenURL())); gui.getEntrenamientoDerechaLabel().setIcon(gui.getProcesadorDatos().escalaImageIcon(((Imagen) gui.getComboBoxImagenesDerecha().getSelectedItem()).getImagenURL())); buttonImagen.setIcon(new ImageIcon("data/icons/view_sidetreeOK.png")); labelImagenPreview.setIcon(gui.getProcesadorDatos().escalaImageIcon(imagen.getImagenURL())); } catch (IOException ex) { ex.printStackTrace(); } } else { } } | public static File copyFile(File file, String dirName) { File destDir = new File(dirName); if (!destDir.exists() || !destDir.isDirectory()) { destDir.mkdirs(); } File src = file; File dest = new File(dirName, src.getName()); try { if (!dest.exists()) { dest.createNewFile(); } FileChannel source = new FileInputStream(src).getChannel(); FileChannel destination = new FileOutputStream(dest).getChannel(); destination.transferFrom(source, 0, source.size()); source.close(); destination.close(); } catch (FileNotFoundException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } return dest; } | 17,157 |
1 | private void addAuditDatastream() throws ObjectIntegrityException, StreamIOException { if (m_obj.getAuditRecords().size() == 0) { return; } String dsId = m_pid.toURI() + "/AUDIT"; String dsvId = dsId + "/" + DateUtility.convertDateToString(m_obj.getCreateDate()); Entry dsEntry = m_feed.addEntry(); dsEntry.setId(dsId); dsEntry.setTitle("AUDIT"); dsEntry.setUpdated(m_obj.getCreateDate()); dsEntry.addCategory(MODEL.STATE.uri, "A", null); dsEntry.addCategory(MODEL.CONTROL_GROUP.uri, "X", null); dsEntry.addCategory(MODEL.VERSIONABLE.uri, "false", null); dsEntry.addLink(dsvId, Link.REL_ALTERNATE); Entry dsvEntry = m_feed.addEntry(); dsvEntry.setId(dsvId); dsvEntry.setTitle("AUDIT.0"); dsvEntry.setUpdated(m_obj.getCreateDate()); ThreadHelper.addInReplyTo(dsvEntry, m_pid.toURI() + "/AUDIT"); dsvEntry.addCategory(MODEL.FORMAT_URI.uri, AUDIT1_0.uri, null); dsvEntry.addCategory(MODEL.LABEL.uri, "Audit Trail for this object", null); if (m_format.equals(ATOM_ZIP1_1)) { String name = "AUDIT.0.xml"; try { m_zout.putNextEntry(new ZipEntry(name)); Reader r = new StringReader(DOTranslationUtility.getAuditTrail(m_obj)); IOUtils.copy(r, m_zout, m_encoding); m_zout.closeEntry(); r.close(); } catch (IOException e) { throw new StreamIOException(e.getMessage(), e); } IRI iri = new IRI(name); dsvEntry.setSummary("AUDIT.0"); dsvEntry.setContent(iri, "text/xml"); } else { dsvEntry.setContent(DOTranslationUtility.getAuditTrail(m_obj), "text/xml"); } } | public static void copyFile(File inputFile, File outputFile) throws IOException { BufferedInputStream fr = new BufferedInputStream(new FileInputStream(inputFile)); BufferedOutputStream fw = new BufferedOutputStream(new FileOutputStream(outputFile)); byte[] buf = new byte[8192]; int n; while ((n = fr.read(buf)) >= 0) fw.write(buf, 0, n); fr.close(); fw.close(); } | 17,158 |
1 | public static void copyFile(File sourceFile, File destFile) throws IOException { if (!destFile.exists()) { destFile.createNewFile(); } FileChannel source = null; FileChannel destination = null; try { source = new FileInputStream(sourceFile).getChannel(); destination = new FileOutputStream(destFile).getChannel(); destination.transferFrom(source, 0, source.size()); } finally { if (source != null) { source.close(); } if (destination != null) { destination.close(); } } } | public static void copyFile(File source, String target) throws FileNotFoundException, IOException { File fout = new File(target); fout.mkdirs(); fout.delete(); fout = new File(target); FileChannel in = new FileInputStream(source).getChannel(); FileChannel out = new FileOutputStream(target).getChannel(); in.transferTo(0, in.size(), out); in.close(); out.close(); } | 17,159 |
1 | public long getMD5Hash(String str) { MessageDigest m = null; try { m = MessageDigest.getInstance("SHA-256"); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } m.update(str.getBytes(), 0, str.length()); return new BigInteger(1, m.digest()).longValue(); } | private static String processStr(String srcStr, String sign) throws NoSuchAlgorithmException, NullPointerException { if (null == srcStr) { throw new java.lang.NullPointerException("��Ҫ���ܵ��ַ�ΪNull"); } MessageDigest digest; String algorithm = "MD5"; String result = ""; digest = MessageDigest.getInstance(algorithm); digest.update(srcStr.getBytes()); byte[] byteRes = digest.digest(); int length = byteRes.length; for (int i = 0; i < length; i++) { result = result + byteHEX(byteRes[i], sign); } return result; } | 17,160 |
0 | protected List<String[]> execute(String queryString, String sVar1, String sVar2, String filter) throws Exception { String query = URLEncoder.encode(queryString, "UTF-8"); String urlString = "http://sparql.bibleontology.com/sparql.jsp?sparql=" + query + "&type1=xml"; URL url; BufferedReader br = null; ArrayList<String[]> values = new ArrayList<String[]>(); try { url = new URL(urlString); URLConnection conn = url.openConnection(); br = new BufferedReader(new InputStreamReader(conn.getInputStream())); StringBuffer sb = new StringBuffer(); String line; String sURI1 = null; String sURI2 = null; boolean b1 = false; boolean b2 = false; while ((line = br.readLine()) != null) { if (line.indexOf("</result>") != -1) { if (sURI1 != null && sURI2 != null) { String pair[] = { sURI1, sURI2 }; values.add(pair); } sURI1 = null; sURI2 = null; b1 = false; b2 = false; } if (line.indexOf("binding name=\"" + sVar1 + "\"") != -1) { b1 = true; continue; } else if (b1) { String s1 = getURI(line); if (s1 != null) { s1 = checkURISyntax(s1); if (filter == null || s1.startsWith(filter)) { sURI1 = s1; } } b1 = false; continue; } if (line.indexOf("binding name=\"" + sVar2 + "\"") != -1) { b2 = true; continue; } else if (b2) { String s2 = getURI(line); if (s2 != null) { s2 = checkURISyntax(s2); if (filter == null || s2.startsWith(filter)) { sURI2 = s2; } } b2 = false; continue; } } } catch (MalformedURLException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } finally { br.close(); } return values; } | private String createCSVFile(String fileName) throws FileNotFoundException, IOException { String csvFile = fileName + ".csv"; BufferedReader buf = new BufferedReader(new FileReader(fileName)); BufferedWriter out = new BufferedWriter(new FileWriter(csvFile)); String line; while ((line = buf.readLine()) != null) out.write(line + "\n"); buf.close(); out.close(); return csvFile; } | 17,161 |
0 | public static void copyTo(java.io.File source, java.io.File dest) throws Exception { java.io.FileInputStream inputStream = null; java.nio.channels.FileChannel sourceChannel = null; java.io.FileOutputStream outputStream = null; java.nio.channels.FileChannel destChannel = null; long size = source.length(); long bufferSize = 1024; long count = 0; if (size < bufferSize) bufferSize = size; Exception exception = null; try { if (dest.exists() == false) dest.createNewFile(); inputStream = new java.io.FileInputStream(source); sourceChannel = inputStream.getChannel(); outputStream = new java.io.FileOutputStream(dest); destChannel = outputStream.getChannel(); while (count < size) count += sourceChannel.transferTo(count, bufferSize, destChannel); } catch (Exception e) { exception = e; } finally { closeFileChannel(sourceChannel); closeFileChannel(destChannel); } if (exception != null) throw exception; } | public static void copy(URL url, String outPath) throws IOException { System.out.println("copying from: " + url + " to " + outPath); InputStream in = url.openStream(); FileOutputStream fout = new FileOutputStream(outPath); byte[] data = new byte[8192]; int read = -1; while ((read = in.read(data)) != -1) { fout.write(data, 0, read); } fout.close(); } | 17,162 |
0 | public void saveMapping() throws SQLException { Connection connection = null; PreparedStatement ps = null; try { Class.forName("com.mysql.jdbc.Driver"); connection = (Connection) DriverManager.getConnection(this.jdbcURL); connection.setAutoCommit(false); String query = "INSERT INTO mapping(product_id, comp_id, count) VALUES(?,?,?)"; ps = (PreparedStatement) connection.prepareStatement(query); ps.setInt(1, this.productId); ps.setInt(2, this.componentId); ps.setInt(3, 1); ps.executeUpdate(); } catch (Exception ex) { connection.rollback(); } finally { try { connection.close(); } catch (Exception ex) { } try { ps.close(); } catch (Exception ex) { } } } | public static void doVersionCheck(View view) { view.showWaitCursor(); try { URL url = new URL(jEdit.getProperty("version-check.url")); InputStream in = url.openStream(); BufferedReader bin = new BufferedReader(new InputStreamReader(in)); String line; String develBuild = null; String stableBuild = null; while ((line = bin.readLine()) != null) { if (line.startsWith(".build")) develBuild = line.substring(6).trim(); else if (line.startsWith(".stablebuild")) stableBuild = line.substring(12).trim(); } bin.close(); if (develBuild != null && stableBuild != null) { doVersionCheck(view, stableBuild, develBuild); } } catch (IOException e) { String[] args = { jEdit.getProperty("version-check.url"), e.toString() }; GUIUtilities.error(view, "read-error", args); } view.hideWaitCursor(); } | 17,163 |
1 | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | public void saveUserUpFile(UserInfo userInfo, String distFileName, InputStream instream) throws IOException { String fullPicFile = BBSCSUtil.getUserWebFilePath(userInfo.getId()) + distFileName; String fullPicFileSmall = BBSCSUtil.getUserWebFilePath(userInfo.getId()) + distFileName + Constant.IMG_SMALL_FILEPREFIX; OutputStream bos = new FileOutputStream(fullPicFile); IOUtils.copy(instream, bos); ImgUtil.reduceImg(fullPicFile, fullPicFileSmall, this.getSysConfig().getFaceWidth(), this.getSysConfig().getFaceHigh(), 0); } | 17,164 |
1 | public boolean copy(String file, String path) { try { File file_in = new File(file); String tmp1, tmp2; tmp1 = file; tmp2 = path; while (tmp2.contains("\\")) { tmp2 = tmp2.substring(tmp2.indexOf("\\") + 1); tmp1 = tmp1.substring(tmp1.indexOf("\\") + 1); } tmp1 = file.substring(0, file.length() - tmp1.length()) + tmp2 + tmp1.substring(tmp1.indexOf("\\")); File file_out = new File(tmp1); File parent = file_out.getParentFile(); parent.mkdirs(); FileInputStream in1 = new FileInputStream(file_in); FileOutputStream out1 = new FileOutputStream(file_out); byte[] bytes = new byte[1024]; int c; while ((c = in1.read(bytes)) != -1) out1.write(bytes, 0, c); in1.close(); out1.close(); return true; } catch (Exception e) { e.printStackTrace(); System.out.println("Error!"); return false; } } | public static void copyFile(String oldPath, String newPath) throws IOException { int bytesum = 0; int byteread = 0; File oldfile = new File(oldPath); if (oldfile.exists()) { InputStream inStream = new FileInputStream(oldPath); FileOutputStream fs = new FileOutputStream(newPath); byte[] buffer = new byte[1444]; while ((byteread = inStream.read(buffer)) != -1) { bytesum += byteread; fs.write(buffer, 0, byteread); } inStream.close(); } } | 17,165 |
0 | public static void processRequest(byte[] b) throws Exception { URL url = new URL("http://localhost:8080/instantsoap-ws-echotest-1.0/services/instantsoap/applications"); URLConnection connection = url.openConnection(); HttpURLConnection httpConn = (HttpURLConnection) connection; httpConn.setRequestProperty("Content-Length", String.valueOf(b.length)); httpConn.setRequestProperty("Content-Type", "text/xml; charset=utf-8"); httpConn.setRequestProperty("SOAPAction", ""); httpConn.setRequestMethod("POST"); httpConn.setDoOutput(true); httpConn.setDoInput(true); OutputStream out = httpConn.getOutputStream(); out.write(b); out.close(); BufferedReader in = new BufferedReader(new InputStreamReader(httpConn.getInputStream())); String inputLine; while ((inputLine = in.readLine()) != null) System.out.println(inputLine); in.close(); } | private static InputStream stream(String input) { try { if (input.startsWith("http://")) return URIFactory.url(input).openStream(); else return stream(new File(input)); } catch (IOException e) { throw new RuntimeException(e); } catch (URISyntaxException e) { throw new RuntimeException(e); } } | 17,166 |
0 | public URLConnection getResourceConnection(String name) throws ResourceException { if (context == null) throw new ResourceException("There is no ServletContext to get the requested resource"); URL url = null; try { url = context.getResource("/WEB-INF/scriptags/" + name); return url.openConnection(); } catch (Exception e) { throw new ResourceException(String.format("Resource '%s' could not be found (url: %s)", name, url), e); } } | public Object downloadFile(File destinationFile, URL[] urls, DownloadListener listener, Object checksum, long length, PRIORITY priority) throws DownloadException { URL url = urls[0]; if (!url.getProtocol().equalsIgnoreCase("http")) { throw new DownloadException(" Only HTTP is supported in this version "); } if (!destinationFile.exists()) { try { destinationFile.createNewFile(); } catch (IOException e) { e.printStackTrace(); throw new DownloadException("Unable to download from URL : " + url.toString()); } } HeadMethod head = new HeadMethod(url.toString()); HttpClient httpClient = new HttpClient(); try { httpClient.executeMethod(head); Header[] headers = head.getResponseHeaders(); for (Header header : headers) { System.out.println(header); } Header header = head.getResponseHeader("Content-Length"); Object contentLength = header.getValue(); Long fileLength = Long.parseLong(contentLength.toString()); System.out.println(length + " : " + fileLength); GetMethod get = new GetMethod(url.toString()); httpClient.executeMethod(get); InputStream ins = get.getResponseBodyAsStream(); FileOutputStream fos = new FileOutputStream(destinationFile); IOUtils.copy(ins, fos); System.out.println(" DOWNLOADED FILE"); } catch (HttpException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } return null; } | 17,167 |
0 | public static void copy(File from_file, File to_file) throws IOException { if (!from_file.exists()) abort("FileCopy: no such source file: " + from_file.getName()); if (!from_file.isFile()) abort("FileCopy: can't copy directory: " + from_file.getName()); if (!from_file.canRead()) abort("FileCopy: source file is unreadable: " + from_file.getName()); if (to_file.isDirectory()) to_file = new File(to_file, from_file.getName()); if (to_file.exists()) { if (!to_file.canWrite()) abort("FileCopy: destination file is unwriteable: " + to_file.getName()); } else { String parent = to_file.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) abort("FileCopy: destination directory doesn't exist: " + parent); if (dir.isFile()) abort("FileCopy: destination is not a directory: " + parent); if (!dir.canWrite()) abort("FileCopy: destination directory is unwriteable: " + parent); } FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(from_file); to = new FileOutputStream(to_file); byte[] buffer = new byte[4096]; int bytes_read; while ((bytes_read = from.read(buffer)) != -1) { to.write(buffer, 0, bytes_read); } } finally { if (from != null) { try { from.close(); } catch (IOException e) { e.printStackTrace(); } } if (to != null) { try { to.close(); } catch (IOException e) { e.printStackTrace(); } } } } | private String encryptPassword(String password) throws NoSuchAlgorithmException { StringBuffer encryptedPassword = new StringBuffer(); MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.reset(); md5.update(password.getBytes()); byte digest[] = md5.digest(); for (int i = 0; i < digest.length; i++) { String hex = Integer.toHexString(0xFF & digest[i]); if (hex.length() == 1) { encryptedPassword.append('0'); } encryptedPassword.append(hex); } return encryptedPassword.toString(); } | 17,168 |
0 | public static InputStream sendReq(String url, String content, ConnectData data) { try { URLConnection con = new URL(url).openConnection(); con.setConnectTimeout(TIMEOUT); con.setReadTimeout(TIMEOUT); con.setUseCaches(false); setUA(con); con.setRequestProperty("Accept-Charset", "utf-8"); con.setDoOutput(true); con.setRequestProperty("Content-Type", "application/x-www-form-urlencoded"); if (data.cookie != null) con.setRequestProperty("Cookie", data.cookie); HttpURLConnection httpurl = (HttpURLConnection) con; httpurl.setRequestMethod("POST"); Writer wr = new OutputStreamWriter(con.getOutputStream()); wr.write(content); wr.flush(); con.connect(); InputStream is = con.getInputStream(); is = new BufferedInputStream(is); wr.close(); parseCookie(con, data); return is; } catch (IOException ioe) { Log.except("failed to send request " + url, ioe); } return null; } | public byte[] getResponseContent() throws IOException { if (responseContent == null) { InputStream is = getResponseStream(); if (is == null) { responseContent = new byte[0]; } else { ByteArrayOutputStream baos = new ByteArrayOutputStream(4096); IOUtils.copy(is, baos); responseContent = baos.toByteArray(); } } return responseContent; } | 17,169 |
0 | private static void userAuth(String challenge) throws IOException { try { MessageDigest md = MessageDigest.getInstance("BrokenMD4"); String passwd = null; if (System.getProperty("jarsync.password.gui") != null) { JPasswordField pass = new JPasswordField(); JPanel panel = new JPanel(new GridLayout(2, 1)); panel.add(new JLabel("Password:")); panel.add(pass); JOptionPane.showMessageDialog(null, panel, remoteUser + '@' + remoteHost + "'s Password", JOptionPane.QUESTION_MESSAGE); passwd = new String(pass.getPassword()); } else { System.out.print(remoteUser + '@' + remoteHost + "'s password: "); passwd = Util.readLine(System.in); System.out.println(); } md.update(new byte[4]); md.update(passwd.getBytes("US-ASCII")); md.update(challenge.getBytes("US-ASCII")); byte[] response = md.digest(); Util.writeASCII(out, remoteUser + " " + Util.base64(response) + '\n'); out.flush(); } catch (NoSuchAlgorithmException nsae) { throw new IOException("could not create message digest."); } } | public static byte[] sendSmsRequest(String url, String param) { byte[] bytes = null; try { URL httpurl = new URL(url); HttpURLConnection httpConn = (HttpURLConnection) httpurl.openConnection(); httpConn.setRequestProperty("Accept-Language", "zh-CN"); httpConn.setDoOutput(true); httpConn.setDoInput(true); PrintWriter out = new PrintWriter(httpConn.getOutputStream()); out.print(param); out.flush(); out.close(); InputStream ism = httpConn.getInputStream(); bytes = new byte[httpConn.getContentLength()]; ism.read(bytes); ism.close(); MsgPrint.showByteArray("result", bytes); } catch (Exception e) { return new byte[] { 0, 0, 0, 0 }; } return bytes; } | 17,170 |
1 | public void actionPerformed(ActionEvent e) { JFileChooser fc = new JFileChooser(""); fc.setMultiSelectionEnabled(false); fc.setFileSelectionMode(JFileChooser.FILES_ONLY); int option = 0; boolean save = m_data != null; if (save) option = fc.showSaveDialog(this); else option = fc.showOpenDialog(this); if (option != JFileChooser.APPROVE_OPTION) return; File file = fc.getSelectedFile(); if (file == null) return; log.info(file.toString()); try { if (save) { FileOutputStream os = new FileOutputStream(file); byte[] buffer = (byte[]) m_data; os.write(buffer); os.flush(); os.close(); log.config("Save to " + file + " #" + buffer.length); } else { FileInputStream is = new FileInputStream(file); ByteArrayOutputStream os = new ByteArrayOutputStream(); byte[] buffer = new byte[1024 * 8]; int length = -1; while ((length = is.read(buffer)) != -1) os.write(buffer, 0, length); is.close(); byte[] data = os.toByteArray(); m_data = data; log.config("Load from " + file + " #" + data.length); os.close(); } } catch (Exception ex) { log.log(Level.WARNING, "Save=" + save, ex); } try { fireVetoableChange(m_columnName, null, m_data); } catch (PropertyVetoException pve) { } } | public void copyTo(String newname) throws IOException { FileChannel srcChannel = new FileInputStream(dosname).getChannel(); FileChannel dstChannel = new FileOutputStream(newname).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } | 17,171 |
0 | private static boolean isXmlApplicationFile(URL url) throws java.io.IOException { if (DEBUG) { System.out.println("Checking whether file is xml"); } String firstLine; BufferedReader fileReader = null; try { fileReader = new BomStrippingInputStreamReader(url.openStream()); firstLine = fileReader.readLine(); } finally { if (fileReader != null) fileReader.close(); } if (firstLine == null) { return false; } for (String startOfXml : STARTOFXMLAPPLICATIONFILES) { if (firstLine.length() >= startOfXml.length() && firstLine.substring(0, startOfXml.length()).equals(startOfXml)) { if (DEBUG) { System.out.println("isXMLApplicationFile = true"); } return true; } } if (DEBUG) { System.out.println("isXMLApplicationFile = false"); } return false; } | private static void checkForUpgrade() { try { Log.out("Checking for updates..."); URL u = ClassLoader.getSystemResource(Settings.readme); if (u == null) { u = HImage.class.getResource("/" + Settings.readme); } DataInputStream i = new DataInputStream(u.openStream()); String tmp = i.readLine(); tmp = tmp.substring(tmp.lastIndexOf(">")); tmp = tmp.substring(tmp.indexOf(".") + 1); tmp = tmp.substring(0, tmp.indexOf("<")); int x = Integer.parseInt(tmp) + 1; String nextVersion = "jftp-1."; if (x < 10) { nextVersion = nextVersion + "0"; } nextVersion = nextVersion + x + ".tar.gz"; File dl = new File(nextVersion); if (!dl.exists() || (dl.length() <= 0)) { URL url = new URL("http://osdn.dl.sourceforge.net/sourceforge/j-ftp/" + nextVersion); BufferedOutputStream f = new BufferedOutputStream(new FileOutputStream(dl)); BufferedInputStream in = new BufferedInputStream(url.openStream()); byte[] buf = new byte[4096]; int stat = 1; Log.out("\ndownloading update: " + dl.getAbsolutePath() + "\n\n"); while (stat > 0) { stat = in.read(buf); if (stat == -1) { break; } f.write(buf, 0, stat); System.out.print("."); } f.flush(); f.close(); in.close(); } Log.out("\n\n\na newer version was found!\nplease install the File " + dl.getAbsolutePath() + " or even better visit the homepage to download the latest version...\n" + "you can turn this feature off if you don't like it (view readme for details)\n\nStarting anyway...\n\n"); } catch (Exception ex) { } Log.out("finished check..."); } | 17,172 |
0 | @Override public void close() throws IOException { super.close(); byte[] signatureData = toByteArray(); ZipOutputStream zipOutputStream = new ZipOutputStream(this.targetOutputStream); ZipInputStream zipInputStream = new ZipInputStream(new FileInputStream(this.originalZipFile)); ZipEntry zipEntry; while (null != (zipEntry = zipInputStream.getNextEntry())) { if (!zipEntry.getName().equals(ODFUtil.SIGNATURE_FILE)) { ZipEntry newZipEntry = new ZipEntry(zipEntry.getName()); zipOutputStream.putNextEntry(newZipEntry); LOG.debug("copying " + zipEntry.getName()); IOUtils.copy(zipInputStream, zipOutputStream); } } zipInputStream.close(); zipEntry = new ZipEntry(ODFUtil.SIGNATURE_FILE); LOG.debug("writing " + zipEntry.getName()); zipOutputStream.putNextEntry(zipEntry); IOUtils.write(signatureData, zipOutputStream); zipOutputStream.close(); } | public static String httpUrlConnection_post(String targetURL, String urlParameters) { System.out.println("httpUrlConnection_post"); URL url; HttpURLConnection connection = null; try { url = new URL(targetURL); connection = (HttpURLConnection) url.openConnection(); connection.setRequestMethod("POST"); connection.setRequestProperty("Content-Type", "application/x-www-form-urlencoded"); connection.setRequestProperty("Content-Length", "" + Integer.toString(urlParameters.getBytes().length)); connection.setRequestProperty("Content-Language", "en-US"); connection.setUseCaches(false); connection.setConnectTimeout(5000); connection.setReadTimeout(5000); connection.setDoInput(true); connection.setDoOutput(true); DataOutputStream wr = new DataOutputStream(connection.getOutputStream()); wr.writeBytes(urlParameters); wr.flush(); wr.close(); InputStream is = connection.getInputStream(); BufferedReader rd = new BufferedReader(new InputStreamReader(is)); String line; StringBuilder response = new StringBuilder(); while ((line = rd.readLine()) != null) { response.append(line); response.append('\r'); } rd.close(); return response.toString(); } catch (Exception e) { System.out.print(e); return null; } finally { if (connection != null) { connection.disconnect(); } } } | 17,173 |
0 | private static URL handleRedirectUrl(URL url) { try { URLConnection cn = url.openConnection(); Utils.setHeader(cn); if (!(cn instanceof HttpURLConnection)) { return url; } HttpURLConnection hcn = (HttpURLConnection) cn; hcn.setInstanceFollowRedirects(false); int resCode = hcn.getResponseCode(); if (resCode == 200) { System.out.println("URL: " + url); return url; } String location = hcn.getHeaderField("Location"); hcn.disconnect(); return handleRedirectUrl(new URL(location.replace(" ", "%20"))); } catch (IOException e) { e.printStackTrace(); } return url; } | public void criarTopicoQuestao(Questao q, Integer idTopico) throws SQLException { PreparedStatement stmt = null; String sql = "INSERT INTO questao_topico (id_questao, id_disciplina, id_topico) VALUES (?,?,?)"; try { stmt = conexao.prepareStatement(sql); stmt.setInt(1, q.getIdQuestao()); stmt.setInt(2, q.getDisciplina().getIdDisciplina()); stmt.setInt(3, idTopico); stmt.executeUpdate(); conexao.commit(); } catch (SQLException e) { conexao.rollback(); throw e; } } | 17,174 |
0 | @Override protected void service(final HttpServletRequest req, final HttpServletResponse res) throws ServletException, IOException { res.setHeader("X-Generator", "VisualMon"); String path = req.getPathInfo(); if (null == path || "".equals(path)) res.sendRedirect(req.getServletPath() + "/"); else if ("/chart".equals(path)) { try { res.setHeader("Cache-Control", "private,no-cache,no-store,must-revalidate"); res.addHeader("Cache-Control", "post-check=0,pre-check=0"); res.setHeader("Expires", "Sat, 26 Jul 1997 05:00:00 GMT"); res.setHeader("Pragma", "no-cache"); res.setDateHeader("Expires", 0); renderChart(req, res); } catch (InterruptedException e) { log.info("Chart generation was interrupted", e); Thread.currentThread().interrupt(); } } else if (path.startsWith("/log_")) { String name = path.substring(5); LogProvider provider = null; for (LogProvider prov : cfg.getLogProviders()) { if (name.equals(prov.getName())) { provider = prov; break; } } if (null == provider) { log.error("Log provider with name \"{}\" not found", name); res.sendError(HttpServletResponse.SC_NOT_FOUND); } else { render(res, provider.getLog(filter.getLocale())); } } else if ("/".equals(path)) { List<LogEntry> logs = new ArrayList<LogEntry>(); for (LogProvider provider : cfg.getLogProviders()) logs.add(new LogEntry(provider.getName(), provider.getTitle(filter.getLocale()))); render(res, new ProbeDataList(filter.getSnapshot(), filter.getAlerts(), logs, ResourceBundle.getBundle("de.frostcode.visualmon.stats", filter.getLocale()).getString("category.empty"), cfg.getDashboardTitle().get(filter.getLocale()))); } else { URL url = Thread.currentThread().getContextClassLoader().getResource(getClass().getPackage().getName().replace('.', '/') + req.getPathInfo()); if (null == url) { res.sendError(HttpServletResponse.SC_NOT_FOUND); return; } res.setDateHeader("Last-Modified", new File(url.getFile()).lastModified()); res.setDateHeader("Expires", new Date().getTime() + YEAR_IN_SECONDS * 1000L); res.setHeader("Cache-Control", "max-age=" + YEAR_IN_SECONDS); URLConnection conn = url.openConnection(); String resourcePath = url.getPath(); String contentType = conn.getContentType(); if (resourcePath.endsWith(".xsl")) { contentType = "text/xml"; res.setCharacterEncoding(ENCODING); } if (contentType == null || "content/unknown".equals(contentType)) { if (resourcePath.endsWith(".css")) contentType = "text/css"; else contentType = getServletContext().getMimeType(resourcePath); } res.setContentType(contentType); res.setContentLength(conn.getContentLength()); OutputStream out = res.getOutputStream(); IOUtils.copy(conn.getInputStream(), out); IOUtils.closeQuietly(conn.getInputStream()); IOUtils.closeQuietly(out); } } | public void testReleaseOnEntityWriteTo() throws Exception { HttpParams params = defaultParams.copy(); ConnManagerParams.setMaxTotalConnections(params, 1); ConnManagerParams.setMaxConnectionsPerRoute(params, new ConnPerRouteBean(1)); ThreadSafeClientConnManager mgr = createTSCCM(params, null); assertEquals(0, mgr.getConnectionsInPool()); DefaultHttpClient client = new DefaultHttpClient(mgr, params); HttpGet httpget = new HttpGet("/random/20000"); HttpHost target = getServerHttp(); HttpResponse response = client.execute(target, httpget); ClientConnectionRequest connreq = mgr.requestConnection(new HttpRoute(target), null); try { connreq.getConnection(250, TimeUnit.MILLISECONDS); fail("ConnectionPoolTimeoutException should have been thrown"); } catch (ConnectionPoolTimeoutException expected) { } HttpEntity e = response.getEntity(); assertNotNull(e); ByteArrayOutputStream outsteam = new ByteArrayOutputStream(); e.writeTo(outsteam); assertEquals(1, mgr.getConnectionsInPool()); connreq = mgr.requestConnection(new HttpRoute(target), null); ManagedClientConnection conn = connreq.getConnection(250, TimeUnit.MILLISECONDS); mgr.releaseConnection(conn, -1, null); mgr.shutdown(); } | 17,175 |
1 | public static void main(String[] args) { String str = "vbnjm7pexhlmof3kapi_key76bbc056cf516a844af25a763b2b8426auth_tokenff8080812374bd3f0123b60363a5230acomment_text你frob118edb4cb78b439207c2329b76395f9fmethodyupoo.photos.comments.addphoto_idff80808123922c950123b6066c946a3f"; MessageDigest md = null; String s = new String("你"); try { md = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); throw new RuntimeException(e.getMessage()); } md.reset(); try { md.update(str.getBytes("UTF-8")); System.out.println(new BigInteger(1, md.digest()).toString(16)); System.out.println(new BigInteger(1, s.getBytes("UTF-8")).toString(16)); } catch (UnsupportedEncodingException e) { e.printStackTrace(); } } | private void getRandomGuid(boolean secure) { MessageDigest md5 = null; StringBuffer sbValueBeforeMD5 = new StringBuffer(); try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { System.out.println("Error: " + e); } try { long time = System.currentTimeMillis(); long rand = 0; if (secure) { rand = secureRandom.nextLong(); } else { rand = random.nextLong(); } sbValueBeforeMD5.append(id); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(time)); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(rand)); valueBeforeMD5 = sbValueBeforeMD5.toString(); md5.update(valueBeforeMD5.getBytes()); byte[] array = md5.digest(); StringBuffer sb = new StringBuffer(); for (int j = 0; j < array.length; ++j) { int b = array[j] & 0xFF; if (b < 0x10) sb.append('0'); sb.append(Integer.toHexString(b)); } valueAfterMD5 = sb.toString(); } catch (Exception e) { System.out.println("Error:" + e); } } | 17,176 |
0 | public void lookupAllFactories() throws IOException { Enumeration setOfFactories = null; ClassLoader classLoader = null; InputStream inputStream = null; classLoader = (ClassLoader) AccessController.doPrivileged(new PrivilegedAction() { public Object run() { ClassLoader cl = Thread.currentThread().getContextClassLoader(); if (cl == null) { cl = ClassLoader.getSystemClassLoader(); } return cl; } }); if (classLoader == null) { return; } try { setOfFactories = classLoader.getResources("META-INF/services/javax.print.StreamPrintServiceFactory"); } catch (IOException e) { e.printStackTrace(); throw new IOException("IOException during resource finding"); } try { while (setOfFactories.hasMoreElements()) { URL url = (URL) setOfFactories.nextElement(); inputStream = url.openStream(); getFactoryClasses(inputStream); } } catch (IOException e1) { e1.printStackTrace(); throw new IOException("IOException during resource reading"); } } | public static boolean writeFileByBinary(InputStream pIs, File pFile, boolean pAppend) { boolean flag = false; try { FileOutputStream fos = new FileOutputStream(pFile, pAppend); IOUtils.copy(pIs, fos); fos.flush(); fos.close(); pIs.close(); flag = true; } catch (Exception e) { LOG.error("将字节流写入�?" + pFile.getName() + "出现异常�?", e); } return flag; } | 17,177 |
1 | public static String getMD5HashFromString(String message) { String hashword = null; try { MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(message.getBytes()); BigInteger hash = new BigInteger(1, md5.digest()); hashword = hash.toString(16); } catch (NoSuchAlgorithmException nsae) { } return hashword; } | public static String encodePassword(String password) { try { MessageDigest messageDiegest = MessageDigest.getInstance("SHA-1"); messageDiegest.update(password.getBytes("UTF-8")); return Base64.encodeToString(messageDiegest.digest(), false); } catch (NoSuchAlgorithmException e) { log.error("Exception while encoding password"); throw new Error(e); } catch (UnsupportedEncodingException e) { log.error("Exception while encoding password"); throw new Error(e); } } | 17,178 |
0 | @Override public void handle(String s, HttpServletRequest httpServletRequest, HttpServletResponse httpServletResponse, int i) throws IOException, ServletException { expected = new StringBuilder(); System.out.println("uri: " + httpServletRequest.getRequestURI()); System.out.println("queryString: " + (queryString = httpServletRequest.getQueryString())); System.out.println("method: " + httpServletRequest.getMethod()); ByteArrayOutputStream baos = new ByteArrayOutputStream(); IOUtils.copy(httpServletRequest.getInputStream(), baos); System.out.println("body: " + (body = baos.toString())); PrintWriter writer = httpServletResponse.getWriter(); writer.append("testsvar"); expected.append("testsvar"); Random r = new Random(); for (int j = 0; j < 10; j++) { int value = r.nextInt(Integer.MAX_VALUE); writer.append(value + ""); expected.append(value); } System.out.println(); writer.close(); httpServletResponse.setStatus(HttpServletResponse.SC_OK); } | public static void getURLData(String url, String savePath) throws MalformedURLException, FileNotFoundException, IOException { if (DEBUG) begin(LOG, url, savePath); InputStream inputSream = null; InputStream bufferedInputStrem = null; OutputStream fileOutputStream = null; try { URL urlObj = new URL(url); inputSream = urlObj.openStream(); bufferedInputStrem = new BufferedInputStream(inputSream); File file = new File(savePath); fileOutputStream = new FileOutputStream(file); byte[] buffer = new byte[0xFFFF]; for (int len; (len = bufferedInputStrem.read(buffer)) != -1; ) { fileOutputStream.write(buffer, 0, len); } } finally { try { if (fileOutputStream != null) fileOutputStream.close(); if (bufferedInputStrem != null) bufferedInputStrem.close(); if (inputSream != null) inputSream.close(); } catch (Exception e) { if (WARN) endWarn(LOG, e); e.printStackTrace(); } } if (DEBUG) end(LOG); } | 17,179 |
0 | public static void main(String[] args) throws Exception { if (args.length != 2) { PrintUtil.prt("arguments: sourcefile, destfile"); System.exit(1); } FileChannel in = new FileInputStream(args[0]).getChannel(), out = new FileOutputStream(args[1]).getChannel(); in.transferTo(0, in.size(), out); } | private Bitmap fetchImage(String urlstr) throws Exception { URL url; url = new URL(urlstr); HttpURLConnection c = (HttpURLConnection) url.openConnection(); c.setDoInput(true); c.setRequestProperty("User-Agent", "Agent"); c.connect(); InputStream is = c.getInputStream(); Bitmap img; img = BitmapFactory.decodeStream(is); return img; } | 17,180 |
1 | public static void copyFile(File inputFile, File outputFile) throws IOException { FileChannel srcChannel = new FileInputStream(inputFile).getChannel(); FileChannel dstChannel = new FileOutputStream(outputFile).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } | private static boolean moveFiles(String sourceDir, String targetDir) { boolean isFinished = false; boolean fileMoved = false; File stagingDir = new File(sourceDir); if (!stagingDir.exists()) { System.out.println(getTimeStamp() + "ERROR - source directory does not exist."); return true; } if (stagingDir.listFiles() == null) { System.out.println(getTimeStamp() + "ERROR - Empty file list. Possible permission error on source directory " + sourceDir); return true; } File[] fileList = stagingDir.listFiles(); for (int x = 0; x < fileList.length; x++) { File f = fileList[x]; if (f.getName().startsWith(".")) { continue; } String targetFileName = targetDir + File.separator + f.getName(); String operation = "move"; boolean success = f.renameTo(new File(targetFileName)); if (success) { fileMoved = true; } else { operation = "mv"; try { Process process = Runtime.getRuntime().exec(new String[] { "mv", f.getCanonicalPath(), targetFileName }); process.waitFor(); process.destroy(); if (!new File(targetFileName).exists()) { success = false; } else { success = true; fileMoved = true; } } catch (Exception e) { success = false; } if (!success) { operation = "copy"; FileChannel in = null; FileChannel out = null; try { in = new FileInputStream(f).getChannel(); File outFile = new File(targetFileName); out = new FileOutputStream(outFile).getChannel(); in.transferTo(0, in.size(), out); in.close(); in = null; out.close(); out = null; f.delete(); success = true; } catch (Exception e) { success = false; } finally { if (in != null) { try { in.close(); } catch (Exception e) { } } if (out != null) { try { out.close(); } catch (Exception e) { } } } } } if (success) { System.out.println(getTimeStamp() + operation + " " + f.getAbsolutePath() + " to " + targetDir); fileMoved = true; } else { System.out.println(getTimeStamp() + "ERROR - " + operation + " " + f.getName() + " to " + targetFileName + " failed."); isFinished = true; } } if (fileMoved && !isFinished) { try { currentLastActivity = System.currentTimeMillis(); updateLastActivity(currentLastActivity); } catch (NumberFormatException e) { System.out.println(getTimeStamp() + "ERROR: NumberFormatException when trying to update lastActivity."); isFinished = true; } catch (IOException e) { System.out.println(getTimeStamp() + "ERROR: IOException when trying to update lastActivity. " + e.toString()); isFinished = true; } } return isFinished; } | 17,181 |
1 | public synchronized void checkout() throws SQLException, InterruptedException { Connection con = this.session.open(); con.setAutoCommit(false); String sql_stmt = DB2SQLStatements.shopping_cart_getAll(this.customer_id); Statement stmt = con.createStatement(ResultSet.TYPE_SCROLL_INSENSITIVE, ResultSet.CONCUR_READ_ONLY); ResultSet res = stmt.executeQuery(sql_stmt); res.last(); int rowcount = res.getRow(); res.beforeFirst(); ShoppingCartItem[] resArray = new ShoppingCartItem[rowcount]; int i = 0; while (res.next()) { resArray[i] = new ShoppingCartItem(); resArray[i].setCustomer_id(res.getInt("customer_id")); resArray[i].setDate_start(res.getDate("date_start")); resArray[i].setDate_stop(res.getDate("date_stop")); resArray[i].setRoom_type_id(res.getInt("room_type_id")); resArray[i].setNumtaken(res.getInt("numtaken")); resArray[i].setTotal_price(res.getInt("total_price")); i++; } this.wait(4000); try { for (int j = 0; j < rowcount; j++) { sql_stmt = DB2SQLStatements.room_date_update(resArray[j]); stmt = con.createStatement(); stmt.executeUpdate(sql_stmt); } } catch (SQLException e) { e.printStackTrace(); con.rollback(); } for (int j = 0; j < rowcount; j++) { System.out.println(j); sql_stmt = DB2SQLStatements.booked_insert(resArray[j], 2); stmt = con.createStatement(); stmt.executeUpdate(sql_stmt); } sql_stmt = DB2SQLStatements.shopping_cart_deleteAll(this.customer_id); stmt = con.createStatement(); stmt.executeUpdate(sql_stmt); con.commit(); this.session.close(con); } | public void add(AddInterceptorChain chain, Entry entry, LDAPConstraints constraints) throws LDAPException { Connection con = (Connection) chain.getRequest().get(JdbcInsert.MYVD_DB_CON + this.dbInsertName); if (con == null) { throw new LDAPException("Operations Error", LDAPException.OPERATIONS_ERROR, "No Database Connection"); } try { con.setAutoCommit(false); HashMap<String, String> db2ldap = (HashMap<String, String>) chain.getRequest().get(JdbcInsert.MYVD_DB_DB2LDAP + this.dbInsertName); String uid = ((RDN) (new DN(entry.getEntry().getDN())).getRDNs().get(0)).getValue(); PreparedStatement ps = con.prepareStatement(this.insertSQL); for (int i = 0; i < this.fields.size(); i++) { String field = this.fields.get(i); if (field.equals(this.rdnField)) { ps.setString(i + 1, uid); } else { ps.setString(i + 1, entry.getEntry().getAttribute(db2ldap.get(field)).getStringValue()); } } ps.executeUpdate(); con.commit(); } catch (SQLException e) { try { con.rollback(); } catch (SQLException e1) { throw new LDAPException("Could not delete entry or rollback transaction", LDAPException.OPERATIONS_ERROR, e.toString(), e); } throw new LDAPException("Could not delete entry", LDAPException.OPERATIONS_ERROR, e.toString(), e); } } | 17,182 |
1 | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | public static void copy(String fromFileName, String toFileName) throws IOException { File fromFile = new File(fromFileName); File toFile = new File(toFileName); if (!fromFile.exists()) throw new IOException("FileCopy: " + "no such source file: " + fromFileName); if (!fromFile.isFile()) throw new IOException("FileCopy: " + "can't copy directory: " + fromFileName); if (!fromFile.canRead()) throw new IOException("FileCopy: " + "source file is unreadable: " + fromFileName); if (toFile.isDirectory()) toFile = new File(toFile, fromFile.getName()); if (toFile.exists()) { if (!toFile.canWrite()) throw new IOException("FileCopy: " + "destination file is unwriteable: " + toFileName); } else { String parent = toFile.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) dir.mkdir(); if (dir.isFile()) throw new IOException("FileCopy: " + "destination is not a directory: " + parent); if (!dir.canWrite()) throw new IOException("FileCopy: " + "destination directory is unwriteable: " + parent); } FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(fromFile); to = new FileOutputStream(toFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead); } finally { if (from != null) try { from.close(); } catch (IOException e) { ; } if (to != null) try { to.close(); } catch (IOException e) { ; } } } | 17,183 |
1 | public void saveUploadFile(String toFileName, UploadFile uploadFile, SysConfig sysConfig) throws IOException { OutputStream bos = new FileOutputStream(toFileName); IOUtils.copy(uploadFile.getInputStream(), bos); if (sysConfig.isAttachImg(uploadFile.getFileName()) && sysConfig.getReduceAttachImg() == 1) { ImgUtil.reduceImg(toFileName, toFileName + Constant.IMG_SMALL_FILEPREFIX, sysConfig.getReduceAttachImgSize(), sysConfig.getReduceAttachImgSize(), 1); } } | public static void copyFile(final String inFile, final String outFile) { FileChannel in = null; FileChannel out = null; try { in = new FileInputStream(inFile).getChannel(); out = new FileOutputStream(outFile).getChannel(); in.transferTo(0, in.size(), out); } catch (final Exception e) { } finally { if (in != null) { try { in.close(); } catch (final Exception e) { } } if (out != null) { try { out.close(); } catch (final Exception e) { } } } } | 17,184 |
1 | @RequestMapping(value = "/verdocumentoFisico.html", method = RequestMethod.GET) public String editFile(ModelMap model, @RequestParam("id") int idAnexo) { Anexo anexo = anexoService.selectById(idAnexo); model.addAttribute("path", anexo.getAnexoCaminho()); try { InputStream is = new FileInputStream(new File(config.baseDir + "/arquivos_upload_direto/" + anexo.getAnexoCaminho())); FileOutputStream fos = new FileOutputStream(new File(config.baseDir + "/temp/" + anexo.getAnexoCaminho())); IOUtils.copy(is, fos); Runtime.getRuntime().exec("chmod 777 " + config.tempDir + anexo.getAnexoCaminho()); } catch (FileNotFoundException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } return "verdocumentoFisico"; } | private void unzipResource(final String resourceName, final File targetDirectory) throws IOException { final URL resource = this.getClass().getResource(resourceName); assertNotNull("Expected '" + resourceName + "' not found.", resource); assertTrue(targetDirectory.isAbsolute()); FileUtils.deleteDirectory(targetDirectory); assertTrue(targetDirectory.mkdirs()); ZipInputStream in = null; boolean suppressExceptionOnClose = true; try { in = new ZipInputStream(resource.openStream()); ZipEntry e; while ((e = in.getNextEntry()) != null) { if (e.isDirectory()) { continue; } final File dest = new File(targetDirectory, e.getName()); assertTrue(dest.isAbsolute()); OutputStream out = null; try { out = FileUtils.openOutputStream(dest); IOUtils.copy(in, out); suppressExceptionOnClose = false; } finally { try { if (out != null) { out.close(); } suppressExceptionOnClose = true; } catch (final IOException ex) { if (!suppressExceptionOnClose) { throw ex; } } } in.closeEntry(); } suppressExceptionOnClose = false; } finally { try { if (in != null) { in.close(); } } catch (final IOException e) { if (!suppressExceptionOnClose) { throw e; } } } } | 17,185 |
1 | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | private long generateNativeInstallExe(File nativeInstallFile, String instTemplate, File instClassFile) throws IOException { InputStream reader = getClass().getResourceAsStream("/" + instTemplate); ByteArrayOutputStream content = new ByteArrayOutputStream(); String installClassVarStr = "000000000000"; byte[] buf = new byte[installClassVarStr.length()]; NumberFormat nf = NumberFormat.getInstance(Locale.US); nf.setGroupingUsed(false); nf.setMinimumIntegerDigits(installClassVarStr.length()); int installClassStopPos = 0; long installClassOffset = reader.available(); int position = 0; System.out.println(VAGlobals.i18n("VAArchiver_GenerateInstallExe")); reader.read(buf, 0, buf.length); position = 1; for (int n = 0; n < 3; n++) { while ((!new String(buf).equals("clname_here_")) && (!new String(buf).equals("clstart_here")) && (!new String(buf).equals("clstop_here_"))) { content.write(buf[0]); int nextb = reader.read(); position++; shiftArray(buf); buf[buf.length - 1] = (byte) nextb; } if (new String(buf).equals("clname_here_")) { VAGlobals.printDebug(" clname_here_ found at " + (position - 1)); StringBuffer clnameBuffer = new StringBuffer(64); clnameBuffer.append(instClassName_); for (int i = clnameBuffer.length() - 1; i < 64; i++) { clnameBuffer.append('.'); } byte[] clnameBytes = clnameBuffer.toString().getBytes(); for (int i = 0; i < 64; i++) { content.write(clnameBytes[i]); position++; } reader.skip(64 - buf.length); reader.read(buf, 0, buf.length); } else if (new String(buf).equals("clstart_here")) { VAGlobals.printDebug(" clstart_here found at " + (position - 1)); buf = nf.format(installClassOffset).getBytes(); for (int i = 0; i < buf.length; i++) { content.write(buf[i]); position++; } reader.read(buf, 0, buf.length); } else if (new String(buf).equals("clstop_here_")) { VAGlobals.printDebug(" clstop_here_ found at " + (position - 1)); installClassStopPos = position - 1; content.write(buf); position += 12; reader.read(buf, 0, buf.length); } } content.write(buf); buf = new byte[2048]; int read = reader.read(buf); while (read > 0) { content.write(buf, 0, read); read = reader.read(buf); } reader.close(); FileInputStream classStream = new FileInputStream(instClassFile); read = classStream.read(buf); while (read > 0) { content.write(buf, 0, read); read = classStream.read(buf); } classStream.close(); content.close(); byte[] contentBytes = content.toByteArray(); installClassVarStr = nf.format(contentBytes.length); byte[] installClassVarBytes = installClassVarStr.getBytes(); for (int i = 0; i < installClassVarBytes.length; i++) { contentBytes[installClassStopPos + i] = installClassVarBytes[i]; } FileOutputStream out = new FileOutputStream(nativeInstallFile); out.write(contentBytes); out.close(); return installClassOffset; } | 17,186 |
1 | public void adicionaCliente(ClienteBean cliente) { PreparedStatement pstmt = null; ResultSet rs = null; String sql = "insert into cliente(nome,cpf,telefone,cursoCargo,bloqueado,ativo,tipo) values(?,?,?,?,?,?,?)"; try { pstmt = connection.prepareStatement(sql, Statement.RETURN_GENERATED_KEYS); pstmt.setString(1, cliente.getNome()); pstmt.setString(2, cliente.getCPF()); pstmt.setString(3, cliente.getTelefone()); pstmt.setString(4, cliente.getCursoCargo()); pstmt.setString(5, cliente.getBloqueado()); pstmt.setString(6, cliente.getAtivo()); pstmt.setString(7, cliente.getTipo()); pstmt.executeUpdate(); rs = pstmt.getGeneratedKeys(); if (rs.next()) { cliente.setIdCliente(rs.getLong(1)); } connection.commit(); } catch (SQLException ex) { try { connection.rollback(); } catch (SQLException ex1) { throw new RuntimeException("Erro ao inserir cliente.", ex1); } throw new RuntimeException("Erro ao inserir cliente.", ex); } finally { try { if (rs != null) rs.close(); if (pstmt != null) pstmt.close(); } catch (SQLException ex) { throw new RuntimeException("Ocorreu um erro no banco de dados.", ex); } } } | public void moveMessage(DBMimeMessage oSrcMsg) throws MessagingException { if (DebugFile.trace) { DebugFile.writeln("Begin DBFolder.moveMessage()"); DebugFile.incIdent(); } JDCConnection oConn = null; PreparedStatement oStmt = null; ResultSet oRSet = null; BigDecimal oPg = null; BigDecimal oPos = null; int iLen = 0; try { oConn = ((DBStore) getStore()).getConnection(); oStmt = oConn.prepareStatement("SELECT " + DB.pg_message + "," + DB.nu_position + "," + DB.len_mimemsg + " FROM " + DB.k_mime_msgs + " WHERE " + DB.gu_mimemsg + "=?"); oStmt.setString(1, oSrcMsg.getMessageGuid()); oRSet = oStmt.executeQuery(); if (oRSet.next()) { oPg = oRSet.getBigDecimal(1); oPos = oRSet.getBigDecimal(2); iLen = oRSet.getInt(3); } oRSet.close(); oRSet = null; oStmt.close(); oStmt = null; oConn.setAutoCommit(false); oStmt = oConn.prepareStatement("UPDATE " + DB.k_categories + " SET " + DB.len_size + "=" + DB.len_size + "-" + String.valueOf(iLen) + " WHERE " + DB.gu_category + "=?"); oStmt.setString(1, ((DBFolder) (oSrcMsg.getFolder())).getCategory().getString(DB.gu_category)); oStmt.executeUpdate(); oStmt.close(); oStmt = null; oStmt = oConn.prepareStatement("UPDATE " + DB.k_categories + " SET " + DB.len_size + "=" + DB.len_size + "+" + String.valueOf(iLen) + " WHERE " + DB.gu_category + "=?"); oStmt.setString(1, getCategory().getString(DB.gu_category)); oStmt.executeUpdate(); oStmt.close(); oStmt = null; oConn.commit(); } catch (SQLException sqle) { if (null != oRSet) { try { oRSet.close(); } catch (Exception ignore) { } } if (null != oStmt) { try { oStmt.close(); } catch (Exception ignore) { } } if (null != oConn) { try { oConn.rollback(); } catch (Exception ignore) { } } throw new MessagingException(sqle.getMessage(), sqle); } if (null == oPg) throw new MessagingException("Source message not found"); if (null == oPos) throw new MessagingException("Source message position is not valid"); DBFolder oSrcFldr = (DBFolder) oSrcMsg.getFolder(); MboxFile oMboxSrc = null, oMboxThis = null; try { oMboxSrc = new MboxFile(oSrcFldr.getFile(), MboxFile.READ_WRITE); oMboxThis = new MboxFile(oSrcFldr.getFile(), MboxFile.READ_WRITE); oMboxThis.appendMessage(oMboxSrc, oPos.longValue(), iLen); oMboxThis.close(); oMboxThis = null; oMboxSrc.purge(new int[] { oPg.intValue() }); oMboxSrc.close(); oMboxSrc = null; } catch (Exception e) { if (oMboxThis != null) { try { oMboxThis.close(); } catch (Exception ignore) { } } if (oMboxSrc != null) { try { oMboxSrc.close(); } catch (Exception ignore) { } } throw new MessagingException(e.getMessage(), e); } try { oConn = ((DBStore) getStore()).getConnection(); BigDecimal dNext = getNextMessage(); String sCatGuid = getCategory().getString(DB.gu_category); oStmt = oConn.prepareStatement("UPDATE " + DB.k_mime_msgs + " SET " + DB.gu_category + "=?," + DB.pg_message + "=? WHERE " + DB.gu_mimemsg + "=?"); oStmt.setString(1, sCatGuid); oStmt.setBigDecimal(2, dNext); oStmt.setString(3, oSrcMsg.getMessageGuid()); oStmt.executeUpdate(); oStmt.close(); oStmt = null; oConn.commit(); } catch (SQLException sqle) { if (null != oStmt) { try { oStmt.close(); } catch (Exception ignore) { } } if (null != oConn) { try { oConn.rollback(); } catch (Exception ignore) { } } throw new MessagingException(sqle.getMessage(), sqle); } if (DebugFile.trace) { DebugFile.decIdent(); DebugFile.writeln("End DBFolder.moveMessage()"); } } | 17,187 |
0 | public stock(String ticker) { try { URL url = new URL("http://finance.yahoo.com/q?s=" + ticker + "&d=v1"); BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); String line; StringBuffer page = new StringBuffer(8192); while ((line = reader.readLine()) != null) { page.append(line); } LispInterpreter lisp = InterpreterFactory.getInterpreter(); lisp.eval("(load \"nregex\")"); String quote = lisp.eval("(second (regex \"<b>([0-9][0-9]\\.[0-9][0-9])</b>\" \"" + cleanse(page) + "\"))"); System.out.println("Current quote: " + quote); lisp.exit(); } catch (Exception e) { e.printStackTrace(); } } | public void reset(String componentName, int currentPilot) { try { PreparedStatement psta = jdbc.prepareStatement("DELETE FROM component_prop " + "WHERE pilot_id = ? " + "AND component_name = ?"); psta.setInt(1, currentPilot); psta.setString(2, componentName); psta.executeUpdate(); jdbc.commit(); } catch (SQLException e) { jdbc.rollback(); log.debug(e); } } | 17,188 |
0 | private String sendMail() throws IOException { String msg = StringEscapeUtils.escapeHtml(message.getText()); StringBuffer buf = new StringBuffer(); buf.append(encode("n", name.getText())); buf.append("&").append(encode("e", email.getText())); buf.append("&").append(encode("r", recpt.getText())); buf.append("&").append(encode("m", msg)); buf.append("&").append(encode("s", score)); buf.append("&").append(encode("i", calcScoreImage())); buf.append("&").append(encode("c", digest(recpt.getText() + "_" + score))); URL url = new URL("http://www.enerjy.com/share/mailit.php"); URLConnection conn = url.openConnection(); conn.setDoOutput(true); OutputStreamWriter writer = null; BufferedReader reader = null; boolean haveOk = false; try { writer = new OutputStreamWriter(conn.getOutputStream()); writer.write(buf.toString()); writer.flush(); reader = new BufferedReader(new InputStreamReader(conn.getInputStream())); for (String line = reader.readLine(); null != line; line = reader.readLine()) { if (line.startsWith("err:")) { return line.substring(4); } else if (line.equals("ok")) { haveOk = true; } } } finally { StreamUtils.close(writer); StreamUtils.close(reader); } if (!haveOk) { return "The server did not return a response."; } return null; } | public static void main(String[] argv) { if (1 < argv.length) { File[] sources = Source(argv[0]); if (null != sources) { for (File src : sources) { File[] targets = Target(src, argv); if (null != targets) { final long srclen = src.length(); try { FileChannel source = new FileInputStream(src).getChannel(); try { for (File tgt : targets) { FileChannel target = new FileOutputStream(tgt).getChannel(); try { source.transferTo(0L, srclen, target); } finally { target.close(); } System.out.printf("Updated %s\n", tgt.getPath()); File[] deletes = Delete(src, tgt); if (null != deletes) { for (File del : deletes) { if (SVN) { if (SvnDelete(del)) System.out.printf("Deleted %s\n", del.getPath()); else System.out.printf("Failed to delete %s\n", del.getPath()); } else if (del.delete()) System.out.printf("Deleted %s\n", del.getPath()); else System.out.printf("Failed to delete %s\n", del.getPath()); } } if (SVN) SvnAdd(tgt); } } finally { source.close(); } } catch (Exception exc) { exc.printStackTrace(); System.exit(1); } } } System.exit(0); } else { System.err.printf("Source file(s) not found in '%s'\n", argv[0]); System.exit(1); } } else { usage(); System.exit(1); } } | 17,189 |
1 | public static void copyFile(File in, File out) throws EnhancedException { try { FileChannel sourceChannel = new FileInputStream(in).getChannel(); FileChannel destinationChannel = new FileOutputStream(out).getChannel(); sourceChannel.transferTo(0, sourceChannel.size(), destinationChannel); sourceChannel.close(); destinationChannel.close(); } catch (Exception e) { throw new EnhancedException("Could not copy file " + in.getAbsolutePath() + " to " + out.getAbsolutePath() + ".", e); } } | protected void shutdown(final boolean unexpected) { ControlerState oldState = this.state; this.state = ControlerState.Shutdown; if (oldState == ControlerState.Running) { if (unexpected) { log.warn("S H U T D O W N --- received unexpected shutdown request."); } else { log.info("S H U T D O W N --- start regular shutdown."); } if (this.uncaughtException != null) { log.warn("Shutdown probably caused by the following Exception.", this.uncaughtException); } this.controlerListenerManager.fireControlerShutdownEvent(unexpected); if (this.dumpDataAtEnd) { Knowledges kk; if (this.config.scenario().isUseKnowledges()) { kk = (this.getScenario()).getKnowledges(); } else { kk = this.getScenario().retrieveNotEnabledKnowledges(); } new PopulationWriter(this.population, this.network, kk).write(this.controlerIO.getOutputFilename(FILENAME_POPULATION)); new NetworkWriter(this.network).write(this.controlerIO.getOutputFilename(FILENAME_NETWORK)); new ConfigWriter(this.config).write(this.controlerIO.getOutputFilename(FILENAME_CONFIG)); ActivityFacilities facilities = this.getFacilities(); if (facilities != null) { new FacilitiesWriter((ActivityFacilitiesImpl) facilities).write(this.controlerIO.getOutputFilename("output_facilities.xml.gz")); } if (((NetworkFactoryImpl) this.network.getFactory()).isTimeVariant()) { new NetworkChangeEventsWriter().write(this.controlerIO.getOutputFilename("output_change_events.xml.gz"), ((NetworkImpl) this.network).getNetworkChangeEvents()); } if (this.config.scenario().isUseHouseholds()) { new HouseholdsWriterV10(this.scenarioData.getHouseholds()).writeFile(this.controlerIO.getOutputFilename(FILENAME_HOUSEHOLDS)); } if (this.config.scenario().isUseLanes()) { new LaneDefinitionsWriter20(this.scenarioData.getScenarioElement(LaneDefinitions20.class)).write(this.controlerIO.getOutputFilename(FILENAME_LANES)); } if (!unexpected && this.getConfig().vspExperimental().isWritingOutputEvents()) { File toFile = new File(this.controlerIO.getOutputFilename("output_events.xml.gz")); File fromFile = new File(this.controlerIO.getIterationFilename(this.getLastIteration(), "events.xml.gz")); IOUtils.copyFile(fromFile, toFile); } } if (unexpected) { log.info("S H U T D O W N --- unexpected shutdown request completed."); } else { log.info("S H U T D O W N --- regular shutdown completed."); } try { Runtime.getRuntime().removeShutdownHook(this.shutdownHook); } catch (IllegalStateException e) { log.info("Cannot remove shutdown hook. " + e.getMessage()); } this.shutdownHook = null; this.collectLogMessagesAppender = null; IOUtils.closeOutputDirLogging(); } } | 17,190 |
1 | public int procesar() { int mas = 0; String uriOntologia = "", source = "", uri = ""; String fichOrigenHTML = "", fichOrigenLN = ""; String ficheroOutOWL = ""; md5 firma = null; StringTokenV2 entra = null, entra2 = null, entra3 = null; FileInputStream lengNat = null; BufferedInputStream lengNat2 = null; DataInputStream entradaLenguajeNatural = null; FileWriter salOWL = null; BufferedWriter salOWL2 = null; PrintWriter salidaOWL = null; String sujeto = "", verbo = "", CD = "", CI = "", fraseOrigen = ""; StringTokenV2 token2; boolean bandera = false; OntClass c = null; OntClass cBak = null; String claseTrabajo = ""; String nombreClase = "", nombrePropiedad = "", variasPalabras = ""; int incre = 0, emergencia = 0; String lineaSalida = ""; String[] ontologia = new String[5]; ontologia[0] = "http://www.criado.info/owl/vertebrados_es.owl#"; ontologia[1] = "http://www.w3.org/2001/sw/WebOnt/guide-src/wine#"; ontologia[2] = "http://www.co-ode.org/ontologies/pizza/2005/10/18/pizza.owl#"; ontologia[3] = "http://www.w3.org/2001/sw/WebOnt/guide-src/food#"; ontologia[4] = "http://www.daml.org/2001/01/gedcom/gedcom#"; String[] ontologiaSource = new String[5]; ontologiaSource[0] = this.directorioMapeo + "\\" + "mapeo_vertebrados_es.xml"; ontologiaSource[1] = this.directorioMapeo + "\\" + "mapeo_wine_es.xml"; ontologiaSource[2] = this.directorioMapeo + "\\" + "mapeo_pizza_es.xml"; ontologiaSource[3] = this.directorioMapeo + "\\" + "mapeo_food_es.xml"; ontologiaSource[4] = this.directorioMapeo + "\\" + "mapeo_parentesco_es.xml"; mapeoIdiomas clasesOntologias; try { if ((entrada = entradaFichero.readLine()) != null) { if (entrada.trim().length() > 10) { entrada2 = new StringTokenV2(entrada.trim(), "\""); if (entrada2.isIncluidaSubcadena("<fichero ontologia=")) { ontologiaOrigen = entrada2.getToken(2); fichOrigenHTML = entrada2.getToken(4); fichOrigenLN = entrada2.getToken(6); if (ontologiaOrigen.equals("VERTEBRADOS")) { source = ontologiaSource[0]; uriOntologia = ontologia[0]; } if (ontologiaOrigen.equals("WINE")) { source = ontologiaSource[1]; uriOntologia = ontologia[1]; } if (ontologiaOrigen.equals("PIZZA")) { source = ontologiaSource[2]; uriOntologia = ontologia[2]; } if (ontologiaOrigen.equals("FOOD")) { source = ontologiaSource[3]; uriOntologia = ontologia[3]; } if (ontologiaOrigen.equals("PARENTESCOS")) { source = ontologiaSource[4]; uriOntologia = ontologia[4]; } firma = new md5(uriOntologia, false); clasesOntologias = new mapeoIdiomas(source); uri = ""; ficheroOutOWL = ""; entra2 = new StringTokenV2(fichOrigenHTML, "\\"); int numToken = entra2.getNumeroTokenTotales(); entra = new StringTokenV2(fichOrigenHTML, " "); if (entra.isIncluidaSubcadena(directorioLocal)) { entra = new StringTokenV2(entra.getQuitar(directorioLocal) + "", " "); uri = entra.getCambiar("\\", "/"); uri = entra.getQuitar(entra2.getToken(numToken)) + ""; entra3 = new StringTokenV2(entra2.getToken(numToken), "."); ficheroOutOWL = entra3.getToken(1) + "_" + firma.toString() + ".owl"; uri = urlPatron + uri + ficheroOutOWL; } entra3 = new StringTokenV2(fichOrigenHTML, "."); ficheroOutOWL = entra3.getToken(1) + "_" + firma.toString() + ".owl"; lineaSalida = "<vistasemantica origen=\"" + fichOrigenLN + "\" destino=\"" + uri + "\" />"; lengNat = new FileInputStream(fichOrigenLN); lengNat2 = new BufferedInputStream(lengNat); entradaLenguajeNatural = new DataInputStream(lengNat2); salOWL = new FileWriter(ficheroOutOWL); salOWL2 = new BufferedWriter(salOWL); salidaOWL = new PrintWriter(salOWL2); while ((entradaInstancias = entradaLenguajeNatural.readLine()) != null) { sujeto = ""; verbo = ""; CD = ""; CI = ""; fraseOrigen = ""; if (entradaInstancias.trim().length() > 10) { entrada2 = new StringTokenV2(entradaInstancias.trim(), "\""); if (entrada2.isIncluidaSubcadena("<oracion sujeto=")) { sujeto = entrada2.getToken(2).trim(); verbo = entrada2.getToken(4).trim(); CD = entrada2.getToken(6).trim(); CI = entrada2.getToken(8).trim(); fraseOrigen = entrada2.getToken(10).trim(); if (sujeto.length() > 0 & verbo.length() > 0 & CD.length() > 0) { bandera = false; c = null; cBak = null; nombreClase = clasesOntologias.getClaseInstancia(CD); if (nombreClase.length() > 0) { bandera = true; } if (bandera) { if (incre == 0) { salidaOWL.write(" <rdf:RDF " + "\n"); salidaOWL.write(" xmlns:j.0=\"" + uriOntologia + "\"" + "\n"); salidaOWL.write(" xmlns:protege=\"http://protege.stanford.edu/plugins/owl/protege#\"" + "\n"); salidaOWL.write(" xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\"" + "\n"); salidaOWL.write(" xmlns:xsd=\"http://www.w3.org/2001/XMLSchema#\"" + "\n"); salidaOWL.write(" xmlns:rdfs=\"http://www.w3.org/2000/01/rdf-schema#\"" + "\n"); salidaOWL.write(" xmlns:owl=\"http://www.w3.org/2002/07/owl#\" " + "\n"); salidaOWL.write(" xmlns=\"" + uri + "#\"" + "\n"); salidaOWL.write(" xml:base=\"" + uri + "\">" + "\n"); salidaOWL.write(" <owl:Ontology rdf:about=\"\">" + "\n"); salidaOWL.write(" <owl:imports rdf:resource=\"" + uriOntologia + "\"/>" + "\n"); salidaOWL.write(" </owl:Ontology>" + "\n"); salidaOWL.flush(); salida.write(lineaSalida + "\n"); salida.flush(); incre = 1; } salidaOWL.write(" <j.0:" + nombreClase + " rdf:ID=\"" + sujeto.toUpperCase() + "\"/>" + "\n"); salidaOWL.write(" <owl:AllDifferent>" + "\n"); salidaOWL.write(" <owl:distinctMembers rdf:parseType=\"Collection\">" + "\n"); salidaOWL.write(" <" + nombreClase + " rdf:about=\"#" + sujeto.toUpperCase() + "\"/>" + "\n"); salidaOWL.write(" </owl:distinctMembers>" + "\n"); salidaOWL.write(" </owl:AllDifferent>" + "\n"); salidaOWL.flush(); bandera = false; } } } } } salidaOWL.write(" </rdf:RDF>" + "\n" + "\n"); salidaOWL.write("<!-- Creado por [html2ws] http://www.luis.criado.org -->" + "\n"); salidaOWL.flush(); } } mas = 1; } else { salida.write("</listaVistasSemanticas>\n"); salida.flush(); salida.close(); bw2.close(); fw2.close(); salidaOWL.close(); entradaFichero.close(); ent2.close(); ent1.close(); mas = -1; } } catch (Exception e) { mas = -2; salida.write("No se encuentra: " + fichOrigen + "\n"); salida.flush(); } return mas; } | public static void copy(File src, File dest) throws IOException { OutputStream stream = new FileOutputStream(dest); FileInputStream fis = new FileInputStream(src); byte[] buffer = new byte[16384]; while (fis.available() != 0) { int read = fis.read(buffer); stream.write(buffer, 0, read); } stream.flush(); } | 17,191 |
0 | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | public static ArrayList[] imageSearch(String imageQuery, int startingIndex) { try { imageQuery = URLEncoder.encode(imageQuery, "UTF-8"); } catch (UnsupportedEncodingException e1) { e1.printStackTrace(); } String queryS = new String(); queryS += "http://images.google.com/images?gbv=1&start=" + startingIndex + "&q=" + imageQuery; String result = ""; try { URL query = new URL(queryS); HttpURLConnection urlc = (HttpURLConnection) query.openConnection(); urlc.setInstanceFollowRedirects(true); urlc.setRequestProperty("User-Agent", ""); urlc.connect(); BufferedReader in = new BufferedReader(new InputStreamReader(urlc.getInputStream())); StringBuffer response = new StringBuffer(); char[] buffer = new char[1024]; while (true) { int charsRead = in.read(buffer); if (charsRead == -1) { break; } response.append(buffer, 0, charsRead); } in.close(); result = response.toString(); } catch (Exception e) { e.printStackTrace(); } ArrayList<String> thumbs = new ArrayList<String>(); ArrayList<String> imgs = new ArrayList<String>(); Matcher m = imgBlock.matcher(result); while (m.find()) { String s = m.group(); Matcher imgM = imgurl.matcher(s); imgM.find(); String url = imgM.group(1); Matcher srcM = imgsrc.matcher(s); srcM.find(); String thumb = srcM.group(1); thumbs.add(thumb); imgs.add(url); } return new ArrayList[] { thumbs, imgs }; } | 17,192 |
1 | public void format(File source, File target) { if (!source.exists()) { throw new IllegalArgumentException("Source '" + source + " doesn't exist"); } if (!source.isFile()) { throw new IllegalArgumentException("Source '" + source + " is not a file"); } target.mkdirs(); String fileExtension = source.getName().substring(source.getName().lastIndexOf(".") + 1); String _target = source.getName().replace(fileExtension, "html"); target = new File(target.getPath() + "/" + _target); try { Reader reader = new FileReader(source); Writer writer = new FileWriter(target); this.format(reader, writer); } catch (Exception e) { e.printStackTrace(); } } | public static void copyResourceFileTo(String destFileName, String resourceFileName) { if (destFileName == null || resourceFileName == null) throw new IllegalArgumentException("Argument cannot be null."); try { FileInputStream in = null; FileOutputStream out = null; URL url = HelperMethods.class.getResource(resourceFileName); if (url == null) { System.out.println("URL " + resourceFileName + " cannot be created."); return; } String fileName = url.getFile(); fileName = fileName.replaceAll("%20", " "); File resourceFile = new File(fileName); if (!resourceFile.isFile()) { System.out.println(fileName + " cannot be opened."); return; } in = new FileInputStream(resourceFile); out = new FileOutputStream(new File(destFileName)); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); } catch (IOException ex) { ex.printStackTrace(); } } | 17,193 |
0 | public void test5() { try { SocketAddress proxyAddress = new InetSocketAddress("127.0.0.1", 8080); Proxy proxy = new Proxy(Type.HTTP, proxyAddress); URL url = new URL("http://woodstock.net.br:8443"); URLConnection connection = url.openConnection(proxy); InputStream inputStream = connection.getInputStream(); Scanner scanner = new Scanner(inputStream); while (scanner.hasNextLine()) { System.out.println(scanner.nextLine()); } } catch (Exception e) { e.printStackTrace(); } } | private boolean cacheUrlFile(String filePath, String realUrl, boolean isOnline) { try { URL url = new URL(realUrl); String encoding = "gbk"; BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream(), encoding)); StringBuilder sb = new StringBuilder(); sb.append(configCenter.getWebRoot()).append(getCacheString(isOnline)).append(filePath); fileEditor.createDirectory(sb.toString()); return fileEditor.saveFile(sb.toString(), in); } catch (IOException e) { } return false; } | 17,194 |
0 | private static String loadUrlToString(String a_url) throws IOException { URL l_url1 = new URL(a_url); BufferedReader br = new BufferedReader(new InputStreamReader(l_url1.openStream())); String l_content = ""; String l_ligne = null; l_content = br.readLine(); while ((l_ligne = br.readLine()) != null) { l_content += AA.SL + l_ligne; } return l_content; } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 17,195 |
1 | public void sendContent(OutputStream out, Range range, Map map, String string) throws IOException, NotAuthorizedException, BadRequestException { System.out.println("sendContent " + file); RFileInputStream in = new RFileInputStream(file); try { IOUtils.copyLarge(in, out); } finally { in.close(); } } | public static boolean copy(File from, File to, Override override) throws IOException { FileInputStream in = null; FileOutputStream out = null; FileChannel srcChannel = null; FileChannel destChannel = null; if (override == null) override = Override.NEWER; switch(override) { case NEVER: if (to.isFile()) return false; break; case NEWER: if (to.isFile() && (from.lastModified() - LASTMODIFIED_DIFF_MILLIS) < to.lastModified()) return false; break; } to.getParentFile().mkdirs(); try { in = new FileInputStream(from); out = new FileOutputStream(to); srcChannel = in.getChannel(); destChannel = out.getChannel(); long position = 0L; long count = srcChannel.size(); while (position < count) { long chunk = Math.min(MAX_IO_CHUNK_SIZE, count - position); position += destChannel.transferFrom(srcChannel, position, chunk); } to.setLastModified(from.lastModified()); return true; } finally { CommonUtils.close(srcChannel); CommonUtils.close(destChannel); CommonUtils.close(out); CommonUtils.close(in); } } | 17,196 |
0 | private void analyseCorpus(final IStatusDisplayer fStatus) { final String sDistrosFile = "Distros.tmp"; final String sSymbolsFile = "Symbols.tmp"; Chunker = new EntropyChunker(); int Levels = 2; sgOverallGraph = new SymbolicGraph(1, Levels); siIndex = new SemanticIndex(sgOverallGraph); try { siIndex.MeaningExtractor = new LocalWordNetMeaningExtractor(); } catch (IOException ioe) { siIndex.MeaningExtractor = null; } try { DocumentSet dsSet = new DocumentSet(FilePathEdt.getText(), 1.0); dsSet.createSets(true, (double) 100 / 100); int iCurCnt, iTotal; String sFile = ""; Iterator iIter = dsSet.getTrainingSet().iterator(); iTotal = dsSet.getTrainingSet().size(); if (iTotal == 0) { appendToLog("No input documents.\n"); appendToLog("======DONE=====\n"); return; } appendToLog("Training chunker..."); Chunker.train(dsSet.toFilenameSet(DocumentSet.FROM_WHOLE_SET)); appendToLog("Setting delimiters..."); setDelimiters(Chunker.getDelimiters()); iCurCnt = 0; cdDoc = new DistributionDocument[Levels]; for (int iCnt = 0; iCnt < Levels; iCnt++) cdDoc[iCnt] = new DistributionDocument(1, MinLevel + iCnt); fStatus.setVisible(true); ThreadList t = new ThreadList(Runtime.getRuntime().availableProcessors() + 1); appendToLog("(Pass 1/3) Loading files..." + sFile); TreeSet tsOverallSymbols = new TreeSet(); while (iIter.hasNext()) { sFile = ((CategorizedFileEntry) iIter.next()).getFileName(); fStatus.setStatus("(Pass 1/3) Loading file..." + sFile, (double) iCurCnt / iTotal); final DistributionDocument[] cdDocArg = cdDoc; final String sFileArg = sFile; for (int iCnt = 0; iCnt < cdDoc.length; iCnt++) { final int iCntArg = iCnt; while (!t.addThreadFor(new Runnable() { public void run() { if (!RightToLeftText) cdDocArg[iCntArg].loadDataStringFromFile(sFileArg, false); else { cdDocArg[iCntArg].setDataString(utils.reverseString(utils.loadFileToString(sFileArg)), iCntArg, false); } } })) Thread.yield(); } try { t.waitUntilCompletion(); } catch (InterruptedException ex) { ex.printStackTrace(System.err); appendToLog("Interrupted..."); sgOverallGraph.removeNotificationListener(); return; } sgOverallGraph.setDataString(((new StringBuffer().append((char) StreamTokenizer.TT_EOF))).toString()); sgOverallGraph.loadFromFile(sFile); fStatus.setStatus("Loaded file..." + sFile, (double) ++iCurCnt / iTotal); Thread.yield(); } Set sSymbols = null; File fPreviousSymbols = new File(sSymbolsFile); boolean bSymbolsLoadedOK = false; if (fPreviousSymbols.exists()) { System.err.println("ATTENTION: Using previous symbols..."); try { FileInputStream fis = new FileInputStream(fPreviousSymbols); ObjectInputStream ois = new ObjectInputStream(fis); sSymbols = (Set) ois.readObject(); ois.close(); bSymbolsLoadedOK = true; } catch (FileNotFoundException ex) { ex.printStackTrace(System.err); } catch (IOException ex) { ex.printStackTrace(System.err); } catch (ClassNotFoundException ex) { ex.printStackTrace(System.err); } } if (!bSymbolsLoadedOK) sSymbols = getSymbolsByProbabilities(sgOverallGraph.getDataString(), fStatus); int iMinSymbolSize = Integer.MAX_VALUE; int iMaxSymbolSize = Integer.MIN_VALUE; Iterator iSymbol = sSymbols.iterator(); while (iSymbol.hasNext()) { String sCurSymbol = (String) iSymbol.next(); if (iMaxSymbolSize < sCurSymbol.length()) iMaxSymbolSize = sCurSymbol.length(); if (iMinSymbolSize > sCurSymbol.length()) iMinSymbolSize = sCurSymbol.length(); } try { FileOutputStream fos = new FileOutputStream(sSymbolsFile); ObjectOutputStream oos = new ObjectOutputStream(fos); oos.writeObject(sSymbols); oos.close(); } catch (FileNotFoundException ex) { ex.printStackTrace(System.err); } catch (IOException ex) { ex.printStackTrace(System.err); } appendToLog("(Pass 2/3) Determining symbol distros per n-gram size..."); iIter = dsSet.getTrainingSet().iterator(); iTotal = dsSet.getTrainingSet().size(); if (iTotal == 0) { appendToLog("No input documents.\n"); appendToLog("======DONE=====\n"); return; } iCurCnt = 0; Distribution dSymbolsPerSize = new Distribution(); Distribution dNonSymbolsPerSize = new Distribution(); Distribution dSymbolSizes = new Distribution(); File fPreviousRun = new File(sDistrosFile); boolean bDistrosLoadedOK = false; if (fPreviousRun.exists()) { System.err.println("ATTENTION: Using previous distros..."); try { FileInputStream fis = new FileInputStream(fPreviousRun); ObjectInputStream ois = new ObjectInputStream(fis); dSymbolsPerSize = (Distribution) ois.readObject(); dNonSymbolsPerSize = (Distribution) ois.readObject(); dSymbolSizes = (Distribution) ois.readObject(); ois.close(); bDistrosLoadedOK = true; } catch (FileNotFoundException ex) { ex.printStackTrace(System.err); } catch (IOException ex) { ex.printStackTrace(System.err); dSymbolsPerSize = new Distribution(); dNonSymbolsPerSize = new Distribution(); dSymbolSizes = new Distribution(); } catch (ClassNotFoundException ex) { ex.printStackTrace(System.err); dSymbolsPerSize = new Distribution(); dNonSymbolsPerSize = new Distribution(); dSymbolSizes = new Distribution(); } } if (!bDistrosLoadedOK) while (iIter.hasNext()) { fStatus.setStatus("(Pass 2/3) Parsing file..." + sFile, (double) iCurCnt++ / iTotal); sFile = ((CategorizedFileEntry) iIter.next()).getFileName(); String sDataString = ""; try { ByteArrayOutputStream bsOut = new ByteArrayOutputStream(); FileInputStream fiIn = new FileInputStream(sFile); int iData = 0; while ((iData = fiIn.read()) > -1) bsOut.write(iData); sDataString = bsOut.toString(); } catch (IOException ioe) { ioe.printStackTrace(System.err); } final Distribution dSymbolsPerSizeArg = dSymbolsPerSize; final Distribution dNonSymbolsPerSizeArg = dNonSymbolsPerSize; final Distribution dSymbolSizesArg = dSymbolSizes; final String sDataStringArg = sDataString; final Set sSymbolsArg = sSymbols; for (int iSymbolSize = iMinSymbolSize; iSymbolSize <= iMaxSymbolSize; iSymbolSize++) { final int iSymbolSizeArg = iSymbolSize; while (!t.addThreadFor(new Runnable() { public void run() { NGramDocument ndCur = new NGramDocument(iSymbolSizeArg, iSymbolSizeArg, 1, iSymbolSizeArg, iSymbolSizeArg); ndCur.setDataString(sDataStringArg); int iSymbolCnt = 0; int iNonSymbolCnt = 0; Iterator iExtracted = ndCur.getDocumentGraph().getGraphLevel(0).getVertexSet().iterator(); while (iExtracted.hasNext()) { String sCur = ((Vertex) iExtracted.next()).toString(); if (sSymbolsArg.contains(sCur)) { iSymbolCnt++; synchronized (dSymbolSizesArg) { dSymbolSizesArg.setValue(sCur.length(), dSymbolSizesArg.getValue(sCur.length()) + 1.0); } } else iNonSymbolCnt++; } synchronized (dSymbolsPerSizeArg) { dSymbolsPerSizeArg.setValue(iSymbolSizeArg, dSymbolsPerSizeArg.getValue(iSymbolSizeArg) + iSymbolCnt); } synchronized (dNonSymbolsPerSizeArg) { dNonSymbolsPerSizeArg.setValue(iSymbolSizeArg, dNonSymbolsPerSizeArg.getValue(iSymbolSizeArg) + iNonSymbolCnt); } } })) Thread.yield(); } } if (!bDistrosLoadedOK) try { t.waitUntilCompletion(); try { FileOutputStream fos = new FileOutputStream(sDistrosFile); ObjectOutputStream oos = new ObjectOutputStream(fos); oos.writeObject(dSymbolsPerSize); oos.writeObject(dNonSymbolsPerSize); oos.writeObject(dSymbolSizes); oos.close(); } catch (FileNotFoundException ex) { ex.printStackTrace(System.err); } catch (IOException ex) { ex.printStackTrace(System.err); } } catch (InterruptedException ex) { appendToLog("Interrupted..."); sgOverallGraph.removeNotificationListener(); return; } appendToLog("\n(Pass 3/3) Determining optimal n-gram range...\n"); NGramSizeEstimator nseEstimator = new NGramSizeEstimator(dSymbolsPerSize, dNonSymbolsPerSize); IntegerPair p = nseEstimator.getOptimalRange(); appendToLog("\nProposed n-gram sizes:" + p.first() + "," + p.second()); fStatus.setStatus("Determining optimal distance...", 0.0); DistanceEstimator de = new DistanceEstimator(dSymbolsPerSize, dNonSymbolsPerSize, nseEstimator); int iBestDist = de.getOptimalDistance(1, nseEstimator.getMaxRank() * 2, p.first(), p.second()); fStatus.setStatus("Determining optimal distance...", 1.0); appendToLog("\nOptimal distance:" + iBestDist); appendToLog("======DONE=====\n"); } finally { sgOverallGraph.removeNotificationListener(); } } | @MediumTest public void testUrlRewriteRules() throws Exception { ContentResolver resolver = getContext().getContentResolver(); GoogleHttpClient client = new GoogleHttpClient(resolver, "Test", false); Settings.Gservices.putString(resolver, "url:test", "http://foo.bar/ rewrite " + mServerUrl + "new/"); Settings.Gservices.putString(resolver, "digest", mServerUrl); try { HttpGet method = new HttpGet("http://foo.bar/path"); HttpResponse response = client.execute(method); String body = EntityUtils.toString(response.getEntity()); assertEquals("/new/path", body); } finally { client.close(); } } | 17,197 |
1 | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { closeQuietly(in); closeQuietly(out); } return success; } | private void copyXsl(File aTargetLogDir) { Trace.println(Trace.LEVEL.UTIL, "copyXsl( " + aTargetLogDir.getName() + " )", true); if (myXslSourceDir == null) { return; } File[] files = myXslSourceDir.listFiles(); for (int i = 0; i < files.length; i++) { File srcFile = files[i]; if (!srcFile.isDirectory()) { File tgtFile = new File(aTargetLogDir + File.separator + srcFile.getName()); FileChannel inChannel = null; FileChannel outChannel = null; try { inChannel = new FileInputStream(srcFile).getChannel(); outChannel = new FileOutputStream(tgtFile).getChannel(); inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw new IOError(e); } finally { if (inChannel != null) try { inChannel.close(); } catch (IOException exc) { throw new IOError(exc); } if (outChannel != null) try { outChannel.close(); } catch (IOException exc) { throw new IOError(exc); } } } } } | 17,198 |
1 | private void duplicateIndices(Connection scon, Connection dcon, String table) { try { String idx_name, idx_att, query; ResultSet idxs = scon.getMetaData().getIndexInfo(null, null, table, false, false); Statement stmt = dcon.createStatement(); while (idxs.next()) { idx_name = idxs.getString(6); idx_att = idxs.getString(9); idx_name += "_" + idx_att + "_idx"; logger.debug("Creating index " + idx_name); query = "CREATE INDEX " + idx_name + " ON " + table + "(" + idx_att + ")"; stmt.executeUpdate(query); dcon.commit(); } } catch (Exception e) { logger.error("Unable to copy indices " + e); try { dcon.rollback(); } catch (SQLException e1) { logger.fatal(e1); } } } | public void addAuthors() throws Exception { if (proposalIds.equals("") || usrIds.equals("")) throw new Exception("No proposal or author selected."); String[] pids = proposalIds.split(","); String[] uids = usrIds.split(","); int pnum = pids.length; int unum = uids.length; if (pnum == 0 || unum == 0) throw new Exception("No proposal or author selected."); int i, j; Calendar date = Calendar.getInstance(); int day = date.get(Calendar.DATE); int month = date.get(Calendar.MONTH); int year = date.get(Calendar.YEAR); String dt = String.valueOf(year) + "-" + String.valueOf(month + 1) + "-" + String.valueOf(day); String pStr = ""; PreparedStatement prepStmt = null; try { con = database.getConnection(); con.setAutoCommit(false); pStr = "insert into event (summary,document1,document2,document3,publicComments,privateComments,ACTION_ID,eventDate,ROLE_ID,reviewText,USR_ID,PROPOSAL_ID,SUBJECTUSR_ID) values " + "('','','','','','','member added','" + dt + "',2,'add member'," + userId + ",?,?)"; prepStmt = con.prepareStatement(pStr); for (i = 0; i < pnum; i++) { for (j = 0; j < unum; j++) { if (!uids[j].equals(userId)) { prepStmt.setString(1, pids[i]); prepStmt.setString(2, uids[j]); prepStmt.executeUpdate(); } } } con.commit(); } catch (Exception e) { if (!con.isClosed()) { con.rollback(); prepStmt.close(); con.close(); } throw new Exception(e.getMessage() + "\n" + pStr + "\npnum=" + pnum + "\n" + pids[0] + "\nunum=" + unum + "\n" + uids[1] + uids[0]); } } | 17,199 |
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