label int64 0 1 | func1 stringlengths 173 53.1k | func2 stringlengths 173 53.1k | id int64 0 901k |
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1 | public void run() { try { if (LOGGER.isDebugEnabled()) { LOGGER.debug("Checking for updates at " + checkUrl); } URL url = new URL(checkUrl); HttpURLConnection connection = (HttpURLConnection) url.openConnection(); connection.connect(); if (connection.getResponseCode() == HttpURLConnection.HTTP_OK) { BufferedReader reader = new BufferedReader(new InputStreamReader(connection.getInputStream())); StringBuffer content = new StringBuffer(); String s = reader.readLine(); while (s != null) { content.append(s); s = reader.readLine(); } LOGGER.info("update-available", content.toString()); } else if (LOGGER.isDebugEnabled()) { LOGGER.debug("No update available (Response code " + connection.getResponseCode() + ")"); } } catch (Throwable e) { if (LOGGER.isDebugEnabled()) { LOGGER.debug("Update check failed", e); } } } | public byte[] downloadAttachmentContent(Attachment issueAttachment) throws IOException { byte[] result = null; URL url = new URL(issueAttachment.getContentURL()); BufferedReader inputReader = null; try { inputReader = new BufferedReader(new InputStreamReader(url.openStream())); StringBuilder contentBuilder = new StringBuilder(); String line; while ((line = inputReader.readLine()) != null) { contentBuilder.append(line); } result = contentBuilder.toString().getBytes(); } finally { if (inputReader != null) { inputReader.close(); } } return result; } | 17,300 |
0 | public String postData(String result, DefaultHttpClient httpclient) { try { HttpPost post = new HttpPost("http://3dforandroid.appspot.com/api/v1/note/create"); StringEntity se = new StringEntity(result); se.setContentEncoding(HTTP.UTF_8); se.setContentType("application/json"); post.setEntity(se); post.setHeader("Content-Type", "application/json"); post.setHeader("Accept", "*/*"); HttpResponse response = httpclient.execute(post); HttpEntity entity = response.getEntity(); InputStream instream; instream = entity.getContent(); responseMessage = read(instream); } catch (IllegalStateException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } return responseMessage; } | public byte[] evaluateResponse(byte[] responseBytes) throws SaslException { if (firstEvaluation) { firstEvaluation = false; StringBuilder challenge = new StringBuilder(100); Iterator iter = configurationManager.getRealms().values().iterator(); Realm aRealm; while (iter.hasNext()) { aRealm = (Realm) iter.next(); if (aRealm.getFullRealmName().equals("null")) continue; challenge.append("realm=\"" + aRealm.getFullRealmName() + "\""); challenge.append(","); } String nonceUUID = UUID.randomUUID().toString(); String nonce = null; try { nonce = new String(Base64.encodeBase64(MD5Digest(String.valueOf(System.nanoTime() + ":" + nonceUUID))), "US-ASCII"); } catch (UnsupportedEncodingException uee) { throw new SaslException(uee.getMessage(), uee); } catch (GeneralSecurityException uee) { throw new SaslException(uee.getMessage(), uee); } nonces.put(nonce, new ArrayList()); nonces.get(nonce).add(Integer.valueOf(1)); challenge.append("nonce=\"" + nonce + "\""); challenge.append(","); challenge.append("qop=\"" + configurationManager.getSaslQOP() + "\""); challenge.append(","); challenge.append("charset=\"utf-8\""); challenge.append(","); challenge.append("algorithm=\"md5-sess\""); if (configurationManager.getSaslQOP().indexOf("auth-conf") != -1) { challenge.append(","); challenge.append("cipher-opts=\"" + configurationManager.getDigestMD5Ciphers() + "\""); } try { return Base64.encodeBase64(challenge.toString().getBytes("US-ASCII")); } catch (UnsupportedEncodingException uee) { throw new SaslException(uee.getMessage(), uee); } } else { String nonce = null; if (!Base64.isArrayByteBase64(responseBytes)) { throw new SaslException("Can not decode Base64 Content", new MalformedBase64ContentException()); } responseBytes = Base64.decodeBase64(responseBytes); List<byte[]> splittedBytes = splitByteArray(responseBytes, (byte) 0x3d); int tokenCountMinus1 = splittedBytes.size() - 1, lastCommaPos; Map rawDirectives = new HashMap(); String key = null; Map<String, String> directives; try { key = new String(splittedBytes.get(0), "US-ASCII"); for (int i = 1; i < tokenCountMinus1; i++) { key = responseTokenProcessor(splittedBytes, rawDirectives, key, i, tokenCountMinus1); } responseTokenProcessor(splittedBytes, rawDirectives, key, tokenCountMinus1, tokenCountMinus1); if (rawDirectives.containsKey("charset")) { String value = new String((byte[]) rawDirectives.get("charset"), "US-ASCII").toLowerCase(locale); if (value.equals("utf-8")) { encoding = "UTF-8"; } } if (encoding.equals("ISO-8859-1")) { decodeAllAs8859(rawDirectives); } else { decodeMixed(rawDirectives); } directives = rawDirectives; } catch (UnsupportedEncodingException uee) { throw new SaslException(uee.getMessage()); } if (!directives.containsKey("username") || !directives.containsKey("nonce") || !directives.containsKey("nc") || !directives.containsKey("cnonce") || !directives.containsKey("response")) { throw new SaslException("Digest-Response lacks at least one neccesery key-value pair"); } if (directives.get("username").indexOf('@') != -1) { throw new SaslException("digest-response username field must not include domain name", new AuthenticationException()); } if (!directives.containsKey("qop")) { directives.put("qop", QOP_AUTH); } if (!directives.containsKey("realm") || ((String) directives.get("realm")).equals("")) { directives.put("realm", "null"); } nonce = (String) directives.get("nonce"); if (!nonces.containsKey(nonce)) { throw new SaslException("Illegal nonce value"); } List<Integer> nonceListInMap = nonces.get(nonce); int nc = Integer.parseInt((String) directives.get("nc"), 16); if (nonceListInMap.get(nonceListInMap.size() - 1).equals(Integer.valueOf(nc))) { nonceListInMap.add(Integer.valueOf(++nc)); } else { throw new SaslException("Illegal nc value"); } nonceListInMap = null; if (directives.get("qop").equals(QOP_AUTH_INT)) integrity = true; else if (directives.get("qop").equals(QOP_AUTH_CONF)) privacy = true; if (privacy) { if (!directives.containsKey("cipher")) { throw new SaslException("Message confidentially required but cipher entry is missing"); } sessionCipher = directives.get("cipher").toLowerCase(locale); if ("3des,des,rc4-40,rc4,rc4-56".indexOf(sessionCipher) == -1) { throw new SaslException("Unsupported cipher for message confidentiality"); } } String realm = directives.get("realm").toLowerCase(Locale.getDefault()); String username = directives.get("username").toLowerCase(locale); if (username.indexOf('@') == -1) { if (!directives.get("realm").equals("null")) { username += directives.get("realm").substring(directives.get("realm").indexOf('@')); } else if (directives.get("authzid").indexOf('@') != -1) { username += directives.get("authzid").substring(directives.get("authzid").indexOf('@')); } } DomainWithPassword domainWithPassword = configurationManager.getRealmPassword(realm, username); if (domainWithPassword == null || domainWithPassword.getPassword() == null) { log.warn("The supplied username and/or realm do(es) not match a registered entry"); return null; } if (realm.equals("null") && username.indexOf('@') == -1) { username += "@" + domainWithPassword.getDomain(); } byte[] HA1 = toByteArray(domainWithPassword.getPassword()); for (int i = domainWithPassword.getPassword().length - 1; i >= 0; i--) { domainWithPassword.getPassword()[i] = 0xff; } domainWithPassword = null; MessageDigest md = null; try { md = MessageDigest.getInstance("MD5"); } catch (GeneralSecurityException gse) { throw new SaslException(gse.getMessage()); } md.update(HA1); md.update(":".getBytes()); md.update((directives.get("nonce")).getBytes()); md.update(":".getBytes()); md.update((directives.get("cnonce")).getBytes()); if (directives.containsKey("authzid")) { md.update(":".getBytes()); md.update((directives.get("authzid")).getBytes()); } MD5DigestSessionKey = HA1 = md.digest(); String MD5DigestSessionKeyToHex = toHex(HA1, HA1.length); md.update("AUTHENTICATE".getBytes()); md.update(":".getBytes()); md.update((directives.get("digest-uri")).getBytes()); if (!directives.get("qop").equals(QOP_AUTH)) { md.update(":".getBytes()); md.update("00000000000000000000000000000000".getBytes()); } byte[] HA2 = md.digest(); String HA2HEX = toHex(HA2, HA2.length); md.update(MD5DigestSessionKeyToHex.getBytes()); md.update(":".getBytes()); md.update((directives.get("nonce")).getBytes()); md.update(":".getBytes()); md.update((directives.get("nc")).getBytes()); md.update(":".getBytes()); md.update((directives.get("cnonce")).getBytes()); md.update(":".getBytes()); md.update((directives.get("qop")).getBytes()); md.update(":".getBytes()); md.update(HA2HEX.getBytes()); byte[] responseHash = md.digest(); String HexResponseHash = toHex(responseHash, responseHash.length); if (HexResponseHash.equals(directives.get("response"))) { md.update(":".getBytes()); md.update((directives.get("digest-uri")).getBytes()); if (!directives.get("qop").equals(QOP_AUTH)) { md.update(":".getBytes()); md.update("00000000000000000000000000000000".getBytes()); } HA2 = md.digest(); HA2HEX = toHex(HA2, HA2.length); md.update(MD5DigestSessionKeyToHex.getBytes()); md.update(":".getBytes()); md.update((directives.get("nonce")).getBytes()); md.update(":".getBytes()); md.update((directives.get("nc")).getBytes()); md.update(":".getBytes()); md.update((directives.get("cnonce")).getBytes()); md.update(":".getBytes()); md.update((directives.get("qop")).getBytes()); md.update(":".getBytes()); md.update(HA2HEX.getBytes()); responseHash = md.digest(); return finalizeAuthentication.finalize(responseHash, username); } else { log.warn("Improper credentials"); return null; } } } | 17,301 |
0 | @Override public void run() { try { jButton1.setEnabled(false); jButton2.setEnabled(false); URL url = new URL(updatePath + "currentVersion.txt"); URLConnection con = url.openConnection(); con.connect(); BufferedReader in = new BufferedReader(new InputStreamReader(con.getInputStream())); String line; for (int i = 0; (line = in.readLine()) != null; i++) { URL fileUrl = new URL(updatePath + line); URLConnection filecon = fileUrl.openConnection(); InputStream stream = fileUrl.openStream(); int oneChar, count = 0; int size = filecon.getContentLength(); jProgressBar1.setMaximum(size); jProgressBar1.setValue(0); File testFile = new File(line); String build = ""; for (String dirtest : line.split("/")) { build += dirtest; if (!build.contains(".")) { File dirfile = new File(build); if (!dirfile.exists()) { dirfile.mkdir(); } } build += "/"; } if (testFile.length() == size) { } else { transferFile(line, fileUrl, size); if (line.endsWith("documents.zip")) { ZipInputStream in2 = new ZipInputStream(new FileInputStream(line)); ZipEntry entry; String pathDoc = line.split("documents.zip")[0]; File docDir = new File(pathDoc + "documents"); if (!docDir.exists()) { docDir.mkdir(); } while ((entry = in2.getNextEntry()) != null) { String outFilename = pathDoc + "documents/" + entry.getName(); OutputStream out = new BufferedOutputStream(new FileOutputStream(outFilename)); byte[] buf = new byte[1024]; int len; while ((len = in2.read(buf)) > 0) { out.write(buf, 0, len); } out.close(); } in2.close(); } if (line.endsWith("mysql.zip")) { ZipFile zipfile = new ZipFile(line); Enumeration entries = zipfile.entries(); String pathDoc = line.split("mysql.zip")[0]; File docDir = new File(pathDoc + "mysql"); if (!docDir.exists()) { docDir.mkdir(); } while (entries.hasMoreElements()) { ZipEntry entry = (ZipEntry) entries.nextElement(); if (entry.isDirectory()) { System.err.println("Extracting directory: " + entry.getName()); (new File(pathDoc + "mysql/" + entry.getName())).mkdir(); continue; } System.err.println("Extracting file: " + entry.getName()); InputStream in2 = zipfile.getInputStream(entry); OutputStream out = new BufferedOutputStream(new FileOutputStream(pathDoc + "mysql/" + entry.getName())); byte[] buf = new byte[1024]; int len; while ((len = in2.read(buf)) > 0) { out.write(buf, 0, len); } in2.close(); out.close(); } } } jProgressBar2.setValue(i + 1); labelFileProgress.setText((i + 1) + "/" + numberFiles); } labelStatus.setText("Update Finished"); jButton1.setVisible(false); jButton2.setText("Finished"); jButton1.setEnabled(true); jButton2.setEnabled(true); } catch (IOException ex) { Logger.getLogger(Updater.class.getName()).log(Level.SEVERE, null, ex); } } | public void movePrior(String[] showOrder, String[] orgID, String targetShowOrder, String targetOrgID) throws Exception { Connection con = null; PreparedStatement ps = null; ResultSet result = null; int moveCount = showOrder.length; DBOperation dbo = factory.createDBOperation(POOL_NAME); String strQuery = "select show_order from " + Common.ORGANIZE_TABLE + " where show_order=" + showOrder[moveCount - 1] + " and organize_id= '" + orgID[moveCount - 1] + "'"; try { con = dbo.getConnection(); con.setAutoCommit(false); ps = con.prepareStatement(strQuery); result = ps.executeQuery(); int maxOrderNo = 0; if (result.next()) { maxOrderNo = result.getInt(1); } String[] sqls = new String[moveCount + 1]; sqls[0] = "update " + Common.ORGANIZE_TABLE + " set show_order=" + maxOrderNo + " where show_order=" + targetShowOrder + " and organize_id= '" + targetOrgID + "'"; for (int i = 0; i < showOrder.length; i++) { sqls[i + 1] = "update " + Common.ORGANIZE_TABLE + " set show_order=show_order-1" + " where show_order=" + showOrder[i] + " and organize_id= '" + orgID[i] + "'"; } for (int j = 0; j < sqls.length; j++) { ps = con.prepareStatement(sqls[j]); int resultCount = ps.executeUpdate(); if (resultCount != 1) { throw new CesSystemException("Organize.movePrior(): ERROR Inserting data " + "in T_SYS_ORGANIZE update !! resultCount = " + resultCount); } } con.commit(); } catch (SQLException se) { if (con != null) { con.rollback(); } throw new CesSystemException("Organize.movePrior(): SQLException while mov organize order " + " :\n\t" + se); } finally { con.setAutoCommit(true); close(dbo, ps, result); } } | 17,302 |
1 | @Override public void copy(final String fileName) throws FileIOException { final long savedCurrentPositionInFile = currentPositionInFile; if (opened) { closeImpl(); } final FileInputStream fis; try { fis = new FileInputStream(file); } catch (FileNotFoundException exception) { throw HELPER_FILE_UTIL.fileIOException(FAILED_OPEN + file, file, exception); } final File destinationFile = new File(fileName); final FileOutputStream fos; try { fos = new FileOutputStream(destinationFile); } catch (FileNotFoundException exception) { throw HELPER_FILE_UTIL.fileIOException(FAILED_OPEN + destinationFile, destinationFile, exception); } try { final byte[] buf = new byte[1024]; int readLength = 0; while ((readLength = fis.read(buf)) != -1) { fos.write(buf, 0, readLength); } } catch (IOException exception) { throw HELPER_FILE_UTIL.fileIOException("failed copy from " + file + " to " + destinationFile, null, exception); } finally { try { if (fis != null) { fis.close(); } } catch (Exception exception) { } try { if (fos != null) { fos.close(); } } catch (Exception exception) { } } if (opened) { openImpl(); seek(savedCurrentPositionInFile); } } | private static void copy(String fromFileName, String toFileName) throws IOException { File fromFile = new File(fromFileName); File toFile = new File(toFileName); if (!fromFile.exists()) throw new IOException("FileCopy: " + "no such source file: " + fromFileName); if (!fromFile.isFile()) throw new IOException("FileCopy: " + "can't copy directory: " + fromFileName); if (!fromFile.canRead()) throw new IOException("FileCopy: " + "source file is unreadable: " + fromFileName); if (toFile.isDirectory()) toFile = new File(toFile, fromFile.getName()); if (toFile.exists()) { if (!toFile.canWrite()) throw new IOException("FileCopy: destination file is unwriteable: " + toFileName); System.out.flush(); BufferedReader in = new BufferedReader(new InputStreamReader(System.in)); String response = in.readLine(); if (!response.equals("Y") && !response.equals("y")) throw new IOException("FileCopy: existing file was not overwritten."); } else { String parent = toFile.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) throw new IOException("FileCopy: " + "destination directory doesn't exist: " + parent); if (dir.isFile()) throw new IOException("FileCopy: " + "destination is not a directory: " + parent); if (!dir.canWrite()) throw new IOException("FileCopy: " + "destination directory is unwriteable: " + parent); } FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(fromFile); to = new FileOutputStream(toFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead); } finally { if (from != null) try { from.close(); } catch (IOException e) { ; } if (to != null) try { to.close(); } catch (IOException e) { ; } } } | 17,303 |
1 | public static void copyFile(File sourceFile, File destFile, boolean overwrite) throws IOException, DirNotFoundException, FileNotFoundException, FileExistsAlreadyException { File destDir = new File(destFile.getParent()); if (!destDir.exists()) { throw new DirNotFoundException(destDir.getAbsolutePath()); } if (!sourceFile.exists()) { throw new FileNotFoundException(sourceFile.getAbsolutePath()); } if (!overwrite && destFile.exists()) { throw new FileExistsAlreadyException(destFile.getAbsolutePath()); } FileInputStream in = new FileInputStream(sourceFile); FileOutputStream out = new FileOutputStream(destFile); byte[] buffer = new byte[8 * 1024]; int count = 0; do { out.write(buffer, 0, count); count = in.read(buffer, 0, buffer.length); } while (count != -1); in.close(); out.close(); } | public static void copyFile5(File srcFile, File destFile) throws IOException { InputStream in = new FileInputStream(srcFile); OutputStream out = new FileOutputStream(destFile); IOUtils.copyLarge(in, out); in.close(); out.close(); } | 17,304 |
0 | public void readPersistentProperties() { try { String file = System.getProperty("user.home") + System.getProperty("file.separator") + ".das2rc"; File f = new File(file); if (f.canRead()) { try { InputStream in = new FileInputStream(f); load(in); in.close(); } catch (IOException e) { e.printStackTrace(); org.das2.util.DasExceptionHandler.handle(e); } } else { if (!f.exists() && f.canWrite()) { try { OutputStream out = new FileOutputStream(f); store(out, ""); out.close(); } catch (IOException e) { e.printStackTrace(); org.das2.util.DasExceptionHandler.handle(e); } } else { System.err.println("Unable to read or write " + file + ". Using defaults."); } } } catch (SecurityException ex) { ex.printStackTrace(); } } | private static String doHash(String frase, String algorithm) { try { String ret; MessageDigest md = MessageDigest.getInstance(algorithm); md.update(frase.getBytes()); BigInteger bigInt = new BigInteger(1, md.digest()); ret = bigInt.toString(16); return ret; } catch (NoSuchAlgorithmException e) { return null; } } | 17,305 |
1 | public void copyFile(String source_file_path, String destination_file_path) { FileWriter fw = null; FileReader fr = null; BufferedReader br = null; BufferedWriter bw = null; File source = null; try { fr = new FileReader(source_file_path); fw = new FileWriter(destination_file_path); br = new BufferedReader(fr); bw = new BufferedWriter(fw); source = new File(source_file_path); int fileLength = (int) source.length(); char charBuff[] = new char[fileLength]; while (br.read(charBuff, 0, fileLength) != -1) bw.write(charBuff, 0, fileLength); } catch (FileNotFoundException fnfe) { System.out.println(source_file_path + " does not exist!"); } catch (IOException ioe) { System.out.println("Error reading/writing files!"); } finally { try { if (br != null) br.close(); if (bw != null) bw.close(); } catch (IOException ioe) { } } } | public void load(String filename) throws VisbardException { String defaultFilename = VisbardMain.getSettingsDir() + File.separator + DEFAULT_SETTINGS_FILE; File defaultFile = new File(defaultFilename); InputStream settingsInStreamFromFile = null; try { sLogger.info("Loading settings from : " + defaultFilename); settingsInStreamFromFile = new FileInputStream(defaultFile); } catch (FileNotFoundException fnf) { sLogger.info("Unable to load custom settings from user's settings directory (" + fnf.getMessage() + "); reverting to default settings"); try { InputStream settingsInStreamFromJar = VisbardMain.class.getClassLoader().getResourceAsStream(filename); FileOutputStream settingsOutStream = new FileOutputStream(defaultFile); int c; while ((c = settingsInStreamFromJar.read()) != -1) settingsOutStream.write(c); settingsInStreamFromJar.close(); settingsOutStream.close(); settingsInStreamFromFile = new FileInputStream(defaultFile); } catch (IOException ioe) { sLogger.warn("Unable to copy default settings to user's settings directory (" + ioe.getMessage() + "); using default settings from ViSBARD distribution package"); settingsInStreamFromFile = VisbardMain.class.getClassLoader().getResourceAsStream(filename); } } this.processSettingsFile(settingsInStreamFromFile, filename); } | 17,306 |
1 | public static final void copy(String source, String destination) { FileInputStream fis = null; FileOutputStream fos = null; try { fis = new FileInputStream(source); fos = new FileOutputStream(destination); java.nio.channels.FileChannel channelSrc = fis.getChannel(); java.nio.channels.FileChannel channelDest = fos.getChannel(); channelSrc.transferTo(0, channelSrc.size(), channelDest); fis.close(); fos.close(); } catch (FileNotFoundException e2) { e2.printStackTrace(); } catch (IOException e2) { e2.printStackTrace(); } } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 17,307 |
1 | public String stringOfUrl(String addr) throws IOException { ByteArrayOutputStream output = new ByteArrayOutputStream(); URL url = new URL(addr); IOUtils.copy(url.openStream(), output); return output.toString(); } | public void SplitFile(File in, File out0, File out1, long pos) throws IOException { FileInputStream fis = new FileInputStream(in); FileOutputStream fos = new FileOutputStream(out0); FileChannel fic = fis.getChannel(); FileChannel foc = fos.getChannel(); foc.transferFrom(fic, 0, pos); foc.close(); fos = new FileOutputStream(out1); foc = fos.getChannel(); foc.transferFrom(fic, 0, fic.size() - pos); foc.close(); fic.close(); } | 17,308 |
1 | public static void copyFile(File src, File dst) { try { FileInputStream fis = new FileInputStream(src); FileOutputStream fos = new FileOutputStream(dst); try { byte[] buf = new byte[1024]; int i = 0; while ((i = fis.read(buf)) != -1) fos.write(buf, 0, i); } catch (IOException e) { throw e; } finally { if (fis != null) fis.close(); if (fos != null) fos.close(); } } catch (IOException e) { logger.error("Error coping file from " + src + " to " + dst, e); } } | public static void main(String[] args) { if (args.length < 2) { System.out.println(" *** DDL (creates) and DML (inserts) script importer from DB ***"); System.out.println(" You must specify name of the file with script importing data"); System.out.println(" Fisrt rows of this file must be:"); System.out.println(" 1) JDBC driver class for your DBMS"); System.out.println(" 2) URL for your database instance"); System.out.println(" 3) user in that database (with sufficient priviliges)"); System.out.println(" 4) password of that user"); System.out.println(" Next rows can have:"); System.out.println(" '}' before table to create,"); System.out.println(" '{' before schema to create tables in,"); System.out.println(" ')' before table to insert into,"); System.out.println(" '(' before schema to insert into tables in."); System.out.println(" '!' before row means that it is a comment."); System.out.println(" If some exception is occured, all script is rolled back."); System.out.println(" 2nd command line argument is name of output file;"); System.out.println(" if its extension is *.sql, its format is standard SQL"); System.out.println(" otherwize format is short one, understanded by SQLScript tool"); System.out.println(" Connection information remains unchanged in the last format"); System.out.println(" but in the first one it takes form 'connect user/password@URL'"); System.out.println(" where URL can be formed with different rools for different DBMSs"); System.out.println(" If file (with short format header) already exists and you specify"); System.out.println(" 3rd command line argument -db, we generate objects in the database"); System.out.println(" (known from the file header; must differ from 1st DB) but not in file"); System.out.println(" Note: when importing to a file of short format, line separators"); System.out.println(" in VARCHARS will be lost; LOBs will be empty for any file"); System.exit(0); } try { String[] info = new String[4]; BufferedReader reader = new BufferedReader(new FileReader(new File(args[0]))); Writer writer = null; Connection outConnection = null; try { for (int i = 0; i < info.length; i++) info[i] = reader.readLine(); try { Class.forName(info[0]); Connection connection = DriverManager.getConnection(info[1], info[2], info[3]); int format = args[1].toLowerCase().endsWith("sql") ? SQL_FORMAT : SHORT_FORMAT; File file = new File(args[1]); if (format == SHORT_FORMAT) { if (file.exists() && args.length > 2 && args[2].equalsIgnoreCase("-db")) { String[] outInfo = new String[info.length]; BufferedReader outReader = new BufferedReader(new FileReader(file)); for (int i = 0; i < outInfo.length; i++) outInfo[i] = reader.readLine(); outReader.close(); if (!(outInfo[1].equals(info[1]) && outInfo[2].equals(info[2]))) { Class.forName(info[0]); outConnection = DriverManager.getConnection(outInfo[1], outInfo[2], outInfo[3]); format = SQL_FORMAT; } } } if (outConnection == null) writer = new BufferedWriter(new FileWriter(file)); SQLImporter script = new SQLImporter(outConnection, connection); script.setFormat(format); if (format == SQL_FORMAT) { writer.write("connect " + info[2] + "/" + info[3] + "@" + script.getDatabaseURL(info[1]) + script.statementTerminator); } else { for (int i = 0; i < info.length; i++) writer.write(info[i] + lineSep); writer.write(lineSep); } try { System.out.println(script.executeScript(reader, writer) + " operations with tables has been generated during import"); } catch (SQLException e4) { reader.close(); if (writer != null) writer.close(); else outConnection.close(); System.out.println(" Script generation error: " + e4); } connection.close(); } catch (Exception e3) { reader.close(); if (writer != null) writer.close(); System.out.println(" Connection error: " + e3); } } catch (IOException e2) { System.out.println("Error in file " + args[0]); } } catch (FileNotFoundException e1) { System.out.println("File " + args[0] + " not found"); } } | 17,309 |
0 | private SystemProperties() { Properties p = new Properties(); ClassLoader classLoader = getClass().getClassLoader(); try { URL url = classLoader.getResource("system.properties"); if (url != null) { InputStream is = url.openStream(); p.load(is); is.close(); System.out.println("Loading " + url); } } catch (Exception e) { e.printStackTrace(); } try { URL url = classLoader.getResource("system-ext.properties"); if (url != null) { InputStream is = url.openStream(); p.load(is); is.close(); System.out.println("Loading " + url); } } catch (Exception e) { e.printStackTrace(); } boolean systemPropertiesLoad = GetterUtil.get(System.getProperty(SYSTEM_PROPERTIES_LOAD), true); boolean systemPropertiesFinal = GetterUtil.get(System.getProperty(SYSTEM_PROPERTIES_FINAL), true); if (systemPropertiesLoad) { Enumeration enu = p.propertyNames(); while (enu.hasMoreElements()) { String key = (String) enu.nextElement(); if (systemPropertiesFinal || Validator.isNull(System.getProperty(key))) { System.setProperty(key, (String) p.get(key)); } } } PropertiesUtil.fromProperties(p, _props); } | public static String digest(String ha1, String ha2, String nonce) { try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(getBytes(ha1, ISO_8859_1)); md.update((byte) ':'); md.update(getBytes(nonce, ISO_8859_1)); md.update((byte) ':'); md.update(getBytes(ha2, ISO_8859_1)); return toHexString(md.digest()); } catch (NoSuchAlgorithmException err) { throw new RuntimeException(err); } } | 17,310 |
1 | public void readData() throws IOException { i = 0; j = 0; URL url = getClass().getResource("resources/Chrom_623_620.dat"); InputStream is = url.openStream(); InputStreamReader isr = new InputStreamReader(is); BufferedReader br = new BufferedReader(isr); s = br.readLine(); StringTokenizer st = new StringTokenizer(s); s = br.readLine(); st = new StringTokenizer(s); chrom_x[i][j] = Double.parseDouble(st.nextToken()); temp_prev = chrom_x[i][j]; chrom_y[i][j] = Double.parseDouble(st.nextToken()); gridmin = chrom_x[i][j]; gridmax = chrom_x[i][j]; sext1[i][j] = Double.parseDouble(st.nextToken()); sext2[i][j] = Double.parseDouble(st.nextToken()); sext3[i][j] = Double.parseDouble(st.nextToken()); sext4[i][j] = Double.parseDouble(st.nextToken()); j++; while ((s = br.readLine()) != null) { st = new StringTokenizer(s); temp_new = Double.parseDouble(st.nextToken()); if (temp_new != temp_prev) { temp_prev = temp_new; i++; j = 0; } chrom_x[i][j] = temp_new; chrom_y[i][j] = Double.parseDouble(st.nextToken()); sext1[i][j] = Double.parseDouble(st.nextToken()); sext2[i][j] = Double.parseDouble(st.nextToken()); sext3[i][j] = Double.parseDouble(st.nextToken()); sext4[i][j] = Double.parseDouble(st.nextToken()); imax = i; jmax = j; j++; if (chrom_x[i][j] <= gridmin) gridmin = chrom_x[i][j]; if (chrom_x[i][j] >= gridmax) gridmax = chrom_x[i][j]; } } | public static boolean exec_applet(String fname, VarContainer vc, ActionContainer ac, ThingTypeContainer ttc, Output OUT, InputStream IN, boolean AT, Statement state, String[] arggies) { if (!urlpath.endsWith("/")) { urlpath = urlpath + '/'; } if (!urlpath.startsWith("http://")) { urlpath = "http://" + urlpath; } String url = urlpath; if (fname.startsWith("dusty_")) { url = url + "libraries/" + fname; } else { url = url + "users/" + fname; } StringBuffer src = new StringBuffer(2400); try { String s; BufferedReader br = new BufferedReader(new InputStreamReader(new URL(url).openStream())); while ((s = br.readLine()) != null) { src.append(s).append('\n'); } br.close(); } catch (Exception e) { OUT.println(new DSOut(DSOut.ERR_OUT, -1, "Dustyscript failed at reading the file'" + fname + "'\n\t...for 'use' statement"), vc, AT); return false; } fork(src, vc, ac, ttc, OUT, IN, AT, state, arggies); return true; } | 17,311 |
1 | private void fetchTree() throws IOException { String urlString = BASE_URL + TREE_URL + DATASET_URL + "&family=" + mFamily; URL url = new URL(urlString); BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream())); String toParse = in.readLine(); while (in.ready()) { String add = in.readLine(); if (add == null) break; toParse += add; } if (toParse != null && !toParse.startsWith("No tree available")) mProteinTree = new PTree(this, toParse); } | public TVRageShowInfo(String xmlShowName) { String[] tmp, tmp2; String line = ""; this.usrShowName = xmlShowName; try { URL url = new URL("http://www.tvrage.com/quickinfo.php?show=" + xmlShowName.replaceAll(" ", "%20")); BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream())); while ((line = in.readLine()) != null) { tmp = line.split("@"); if (tmp[0].equals("Show Name")) showName = tmp[1]; if (tmp[0].equals("Show URL")) showURL = tmp[1]; if (tmp[0].equals("Latest Episode")) { StringTokenizer st = new StringTokenizer(tmp[1], "^"); for (int i = 0; st.hasMoreTokens(); i++) { if (i == 0) { tmp2 = st.nextToken().split("x"); latestSeasonNum = tmp2[0]; latestEpisodeNum = tmp2[1]; if (latestSeasonNum.charAt(0) == '0') latestSeasonNum = latestSeasonNum.substring(1); } else if (i == 1) latestTitle = st.nextToken().replaceAll("&", "and"); else latestAirDate = st.nextToken(); } } if (tmp[0].equals("Next Episode")) { StringTokenizer st = new StringTokenizer(tmp[1], "^"); for (int i = 0; st.hasMoreTokens(); i++) { if (i == 0) { tmp2 = st.nextToken().split("x"); nextSeasonNum = tmp2[0]; nextEpisodeNum = tmp2[1]; if (nextSeasonNum.charAt(0) == '0') nextSeasonNum = nextSeasonNum.substring(1); } else if (i == 1) nextTitle = st.nextToken().replaceAll("&", "and"); else nextAirDate = st.nextToken(); } } if (tmp[0].equals("Status")) status = tmp[1]; if (tmp[0].equals("Airtime")) airTime = tmp[1]; } if (airTime.length() != 0) { tmp = airTime.split(","); airTimeHour = tmp[1]; } in.close(); url = new URL(showURL); in = new BufferedReader(new InputStreamReader(url.openStream())); while ((line = in.readLine()) != null) { if (line.indexOf("<b>Latest Episode: </b>") > -1) { tmp = line.split("'>"); if (tmp[2].indexOf(':') > -1) { tmp = tmp[2].split(":"); latestSeriesNum = tmp[0]; } } else if (line.indexOf("<b>Next Episode: </b>") > -1) { tmp = line.split("'>"); if (tmp[2].indexOf(':') > -1) { tmp = tmp[2].split(":"); nextSeriesNum = tmp[0]; } } } in.close(); } catch (MalformedURLException e) { } catch (IOException e) { } } | 17,312 |
1 | public void insertStringInFile(String file, String textToInsert, long fromByte, long toByte) throws Exception { String tmpFile = file + ".tmp"; BufferedInputStream in = null; BufferedOutputStream out = null; long byteCount = 0; try { in = new BufferedInputStream(new FileInputStream(new File(file))); out = new BufferedOutputStream(new FileOutputStream(tmpFile)); long size = fromByte; byte[] buf = null; if (size == 0) { } else { buf = new byte[(int) size]; int length = -1; if ((length = in.read(buf)) != -1) { out.write(buf, 0, length); byteCount = byteCount + length; } else { String msg = "Failed to read the first '" + size + "' bytes of file '" + file + "'. This might be a programming error."; logger.warning(msg); throw new Exception(msg); } } buf = textToInsert.getBytes(); int length = buf.length; out.write(buf, 0, length); byteCount = byteCount + length; long skipLength = toByte - fromByte; long skippedBytes = in.skip(skipLength); if (skippedBytes == -1) { } else { buf = new byte[4096]; length = -1; while ((length = in.read(buf)) != -1) { out.write(buf, 0, length); byteCount = byteCount + length; } } in.close(); in = null; out.close(); out = null; File fileToDelete = new File(file); boolean wasDeleted = fileToDelete.delete(); if (!wasDeleted) { String msg = "Failed to delete the original file '" + file + "' to replace it with the modified file after text insertion."; logger.warning(msg); throw new Exception(msg); } File fileToRename = new File(tmpFile); boolean wasRenamed = fileToRename.renameTo(fileToDelete); if (!wasRenamed) { String msg = "Failed to rename tmp file '" + tmpFile + "' to the name of the original file '" + file + "'"; logger.warning(msg); throw new Exception(msg); } } catch (Exception e) { logger.log(Level.WARNING, "Failed to read/write file '" + file + "'.", e); throw e; } finally { if (in != null) { try { in.close(); } catch (IOException e) { logger.log(Level.FINEST, "Ignoring error closing input file '" + file + "'.", e); } } if (out != null) { try { out.close(); } catch (IOException e) { logger.log(Level.FINEST, "Ignoring error closing output file '" + tmpFile + "'.", e); } } } } | public GetMessages(String messageType) { String urlString = dms_url + "/servlet/com.ufnasoft.dms.server.ServerGetMessages"; String rvalue = ""; String filename = dms_home + FS + "temp" + FS + username + "messages.xml"; try { String urldata = urlString + "?username=" + URLEncoder.encode(username, "UTF-8") + "&key=" + URLEncoder.encode(key, "UTF-8") + "&messagetype=" + messageType + "&filename=" + URLEncoder.encode(username, "UTF-8") + "messages.xml"; ; DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance(); DocumentBuilder parser = factory.newDocumentBuilder(); URL u = new URL(urldata); DataInputStream is = new DataInputStream(u.openStream()); FileOutputStream os = new FileOutputStream(filename); int iBufSize = is.available(); byte inBuf[] = new byte[20000 * 1024]; int iNumRead; while ((iNumRead = is.read(inBuf, 0, iBufSize)) > 0) os.write(inBuf, 0, iNumRead); os.close(); is.close(); File f = new File(filename); InputStream inputstream = new FileInputStream(f); Document document = parser.parse(inputstream); NodeList nodelist = document.getElementsByTagName("message"); int num = nodelist.getLength(); messages = new String[num][7]; for (int i = 0; i < num; i++) { messages[i][0] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "messageid")); messages[i][1] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "subject")); messages[i][2] = (new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "firstname"))) + " " + (new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "lastname"))); messages[i][3] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "messagedatetime")); messages[i][4] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "messagefrom")); messages[i][5] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "messageto")); messages[i][6] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "documentid")); } } catch (MalformedURLException ex) { System.out.println(ex); } catch (ParserConfigurationException ex) { System.out.println(ex); } catch (NullPointerException e) { } catch (Exception ex) { System.out.println(ex); } } | 17,313 |
1 | public void copy(File source, File dest) throws IOException { System.out.println("copy " + source + " -> " + dest); FileInputStream in = new FileInputStream(source); try { FileOutputStream out = new FileOutputStream(dest); try { byte[] buf = new byte[1024]; int len = 0; while ((len = in.read(buf)) > 0) out.write(buf, 0, len); } finally { out.close(); } } finally { in.close(); } } | private void copyLocalFile(File sourceFile, File destFile) throws IOException { if (!destFile.exists()) { destFile.createNewFile(); } FileChannel source = null; FileChannel destination = null; try { source = new FileInputStream(sourceFile).getChannel(); destination = new FileOutputStream(destFile).getChannel(); destination.transferFrom(source, 0, source.size()); } finally { if (source != null) { source.close(); } if (destination != null) { destination.close(); } } } | 17,314 |
0 | private void convertFile() { final File fileToConvert = filePanel.getInputFile(); final File convertedFile = filePanel.getOutputFile(); if (fileToConvert == null || convertedFile == null) { Main.showMessage("Select valid files for both input and output"); return; } if (fileToConvert.getName().equals(convertedFile.getName())) { Main.showMessage("Input and Output files are same.. select different files"); return; } final int len = (int) fileToConvert.length(); progressBar.setMinimum(0); progressBar.setMaximum(len); progressBar.setValue(0); try { fileCopy(fileToConvert, fileToConvert.getAbsolutePath() + ".bakup"); } catch (IOException e) { Main.showMessage("Unable to Backup input file"); return; } final BufferedReader bufferedReader; try { bufferedReader = new BufferedReader(new FileReader(fileToConvert)); } catch (FileNotFoundException e) { Main.showMessage("Unable to create reader - file not found"); return; } final BufferedWriter bufferedWriter; try { bufferedWriter = new BufferedWriter(new FileWriter(convertedFile)); } catch (IOException e) { Main.showMessage("Unable to create writer for output file"); return; } String input; try { while ((input = bufferedReader.readLine()) != null) { if (stopRequested) { break; } bufferedWriter.write(parseLine(input)); bufferedWriter.newLine(); progressBar.setValue(progressBar.getValue() + input.length()); } } catch (IOException e) { Main.showMessage("Unable to convert " + e.getMessage()); return; } finally { try { bufferedReader.close(); bufferedWriter.close(); } catch (IOException e) { Main.showMessage("Unable to close reader/writer " + e.getMessage()); return; } } if (!stopRequested) { filePanel.readOutputFile(); progressBar.setValue(progressBar.getMaximum()); Main.setStatus("Transliterate Done."); } progressBar.setValue(progressBar.getMinimum()); } | public static String hashPassword(String plaintext) { if (plaintext == null) { return ""; } MessageDigest md = null; try { md = MessageDigest.getInstance("SHA1"); md.update(plaintext.getBytes("UTF-8")); } catch (Exception e) { logger.log(Level.SEVERE, "Problem hashing password.", e); } return new String(Base64.encodeBase64(md.digest())); } | 17,315 |
1 | private String buildShaHashOf(String source) { try { MessageDigest md = MessageDigest.getInstance("SHA"); md.update(source.getBytes()); return new BigInteger(1, md.digest()).toString(16); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); return ""; } } | public static String getMD5(String s) throws NoSuchAlgorithmException { MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.reset(); md5.update(s.getBytes()); byte[] result = md5.digest(); StringBuilder hexString = new StringBuilder(); for (int i = 0; i < result.length; i++) { hexString.append(String.format("%02x", 0xFF & result[i])); } return hexString.toString(); } | 17,316 |
0 | public static void copy(String fromFileName, String toFileName) throws IOException { File fromFile = new File(fromFileName); File toFile = new File(toFileName); if (!fromFile.exists()) throw new IOException("FileCopy: " + "no such source file: " + fromFileName); if (!fromFile.isFile()) throw new IOException("FileCopy: " + "can't copy directory: " + fromFileName); if (!fromFile.canRead()) throw new IOException("FileCopy: " + "source file is unreadable: " + fromFileName); if (toFile.isDirectory()) toFile = new File(toFile, fromFile.getName()); if (toFile.exists()) { if (!toFile.canWrite()) throw new IOException("FileCopy: " + "destination file is unwriteable: " + toFileName); System.out.print("Overwrite existing file " + toFile.getName() + "? (Y/N): "); System.out.flush(); BufferedReader in = new BufferedReader(new InputStreamReader(System.in)); String response = in.readLine(); if (!response.equals("Y") && !response.equals("y")) throw new IOException("FileCopy: " + "existing file was not overwritten."); } else { String parent = toFile.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) throw new IOException("FileCopy: " + "destination directory doesn't exist: " + parent); if (dir.isFile()) throw new IOException("FileCopy: " + "destination is not a directory: " + parent); if (!dir.canWrite()) throw new IOException("FileCopy: " + "destination directory is unwriteable: " + parent); } FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(fromFile); to = new FileOutputStream(toFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead); } finally { if (from != null) try { from.close(); } catch (IOException e) { ; } if (to != null) try { to.close(); } catch (IOException e) { ; } } } | @Override public void onClick(View v) { GsmCellLocation gcl = (GsmCellLocation) tm.getCellLocation(); int cid = gcl.getCid(); int lac = gcl.getLac(); int mcc = Integer.valueOf(tm.getNetworkOperator().substring(0, 3)); int mnc = Integer.valueOf(tm.getNetworkOperator().substring(3, 5)); try { JSONObject holder = new JSONObject(); holder.put("version", "1.1.0"); holder.put("host", "maps.google.com"); holder.put("request_address", true); JSONArray array = new JSONArray(); JSONObject data = new JSONObject(); data.put("cell_id", cid); data.put("location_area_code", lac); data.put("mobile_country_code", mcc); data.put("mobile_network_code", mnc); array.put(data); holder.put("cell_towers", array); DefaultHttpClient client = new DefaultHttpClient(); HttpPost post = new HttpPost("http://www.google.com/loc/json"); StringEntity se = new StringEntity(holder.toString()); post.setEntity(se); HttpResponse resp = client.execute(post); HttpEntity entity = resp.getEntity(); BufferedReader br = new BufferedReader(new InputStreamReader(entity.getContent())); StringBuffer sb = new StringBuffer(); String result = br.readLine(); while (result != null) { sb.append(result); result = br.readLine(); } JSONObject jsonObject = new JSONObject(sb.toString()); JSONObject jsonObject1 = new JSONObject(jsonObject.getString("location")); getAddress(jsonObject1.getString("latitude"), jsonObject1.getString("longitude")); } catch (Exception e) { } } | 17,317 |
0 | public static final String enCode(String algorithm, String string) { MessageDigest md; String result = ""; try { md = MessageDigest.getInstance(algorithm); md.update(string.getBytes()); result = binaryToString(md.digest()); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } return result; } | @Override public InputStream getInputStream() throws IOException { if (dfos == null) { int deferredOutputStreamThreshold = Config.getInstance().getDeferredOutputStreamThreshold(); dfos = new DeferredFileOutputStream(deferredOutputStreamThreshold, Definitions.PROJECT_NAME, "." + Definitions.TMP_EXTENSION); try { IOUtils.copy(is, dfos); } finally { dfos.close(); } } return dfos.getDeferredInputStream(); } | 17,318 |
0 | @SuppressWarnings("static-access") public void run() { while (true) { try { thisThread.sleep(10000); } catch (InterruptedException e) { System.out.print("no connection"); } ++i; umat.flush(); umat = null; try { base = getDocumentBase(); username = getParameter("username"); } catch (Exception e) { } String userdat = "data/" + username + "_l.cod"; URL url = null; try { url = new URL(base, userdat); } catch (MalformedURLException e1) { } InputStream in = null; try { in = url.openStream(); } catch (IOException e1) { } BufferedReader reader = null; try { reader = new BufferedReader(new InputStreamReader(in)); } catch (Exception r) { } try { String line = reader.readLine(); StringTokenizer tokenizer = new StringTokenizer(line, " "); int dim = Integer.parseInt(tokenizer.nextToken().trim().toLowerCase()); this.topol = tokenizer.nextToken().trim().toLowerCase(); xunit = Integer.parseInt(tokenizer.nextToken().trim().toLowerCase()); yunit = Integer.parseInt(tokenizer.nextToken().trim().toLowerCase()); @SuppressWarnings("unused") String neigh = tokenizer.nextToken().trim().toLowerCase(); String label = null; labels = new String[xunit][yunit]; for (int e = 0; e < yunit; e++) { for (int r = 0; r < xunit; r++) { line = reader.readLine(); StringTokenizer tokenizer2 = new StringTokenizer(line, " "); for (int w = 0; w < dim; w++) { if (tokenizer2.countTokens() > 0) tokenizer2.nextToken(); } while (tokenizer2.countTokens() > 0) { label = tokenizer2.nextToken() + " "; } if (label == null) { labels[r][e] = "none"; } else { labels[r][e] = label; } label = null; } } reader.close(); if (topol.equals("hexa")) { xposit = new int[xunit][yunit]; yposit = new int[xunit][yunit]; double divisor1 = xunit; double divisor2 = yunit; for (int p = 0; p < xunit; p++) { for (int q = 0; q < yunit; q++) { if (q % 2 == 0) { double nenner = (p * width); xposit[p][q] = (int) Math.round(nenner / divisor1); } if (q % 2 != 0) { double nenner = (width * 0.5) + (p * width); xposit[p][q] = (int) Math.round(nenner / divisor1); } yposit[p][q] = (int) Math.round(((height * 0.5) + q * height) / divisor2); } } } if (topol.equals("rect")) { xposit = new int[xunit][yunit]; yposit = new int[xunit][yunit]; double divisor1 = xunit; double divisor2 = yunit; for (int p = 0; p < xunit; p++) { for (int q = 0; q < yunit; q++) { double nenner = (width * 0.5) + (p * width); xposit[p][q] = (int) Math.round((nenner / divisor1)); yposit[p][q] = (int) Math.round(((height * 0.5) + q * height) / divisor2); } } } } catch (IOException o) { } String userpng = "images/" + username + ".png"; mt.removeImage(umat); umat = getImage(base, userpng); mt.addImage(umat, 0); try { mt.waitForID(0); } catch (InterruptedException i) { showStatus("Interrupted"); } repaint(); } } | public static void copyResourceFileTo(String destFileName, String resourceFileName) { if (destFileName == null || resourceFileName == null) throw new IllegalArgumentException("Argument cannot be null."); try { FileInputStream in = null; FileOutputStream out = null; URL url = HelperMethods.class.getResource(resourceFileName); if (url == null) { System.out.println("URL " + resourceFileName + " cannot be created."); return; } String fileName = url.getFile(); fileName = fileName.replaceAll("%20", " "); File resourceFile = new File(fileName); if (!resourceFile.isFile()) { System.out.println(fileName + " cannot be opened."); return; } in = new FileInputStream(resourceFile); out = new FileOutputStream(new File(destFileName)); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); } catch (IOException ex) { ex.printStackTrace(); } } | 17,319 |
1 | private void getRandomGUID(boolean secure) { MessageDigest md5 = null; StringBuffer sbValueBeforeMD5 = new StringBuffer(); try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { } try { long time = System.currentTimeMillis(); long rand = 0; if (secure) { rand = mySecureRand.nextLong(); } else { rand = myRand.nextLong(); } sbValueBeforeMD5.append(s_id); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(time)); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(rand)); valueBeforeMD5 = sbValueBeforeMD5.toString(); md5.update(valueBeforeMD5.getBytes()); byte[] array = md5.digest(); StringBuffer sb = new StringBuffer(); for (int j = 0; j < array.length; ++j) { int b = array[j] & 0xFF; if (b < 0x10) sb.append('0'); sb.append(Integer.toHexString(b)); } valueAfterMD5 = sb.toString(); } catch (Exception e) { System.out.println("Error:" + e); } } | public byte[] computeMD5(String plainText) throws VHException { MessageDigest md = null; try { md = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException ex) { throw new VHException("The MD5 hash algorithm is not available.", ex); } try { md.update(plainText.getBytes("UTF-8")); } catch (UnsupportedEncodingException ex) { throw new VHException("The UTF-8 encoding is not supported.", ex); } return md.digest(); } | 17,320 |
0 | @Test public void testWrite() throws Exception { MrstkXmlFileReader reader = new MrstkXmlFileReader(); reader.setFileName("..//data//MrstkXML//prototype3.xml"); reader.read(); SpectrumArray sp = reader.getOutput(); File tmp = File.createTempFile("mrstktest", ".xml"); System.out.println("Writing temp file: " + tmp.getAbsolutePath()); MrstkXmlFileWriter writer = new MrstkXmlFileWriter(sp); writer.setFile(tmp); writer.write(); MrstkXmlFileReader reader2 = new MrstkXmlFileReader(); reader2.setFileName(writer.getFile().getAbsolutePath()); reader2.read(); SpectrumArray sp2 = reader2.getOutput(); assertTrue(sp.equals(sp2)); } | private String sha1(String s) { String encrypt = s; try { MessageDigest sha = MessageDigest.getInstance("SHA-1"); sha.update(s.getBytes()); byte[] digest = sha.digest(); final StringBuffer buffer = new StringBuffer(); for (int i = 0; i < digest.length; ++i) { final byte b = digest[i]; final int value = (b & 0x7F) + (b < 0 ? 128 : 0); buffer.append(value < 16 ? "0" : ""); buffer.append(Integer.toHexString(value)); } encrypt = buffer.toString(); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } return encrypt; } | 17,321 |
0 | public void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException { String url = request.getParameter("proxyurl"); URLConnection conn = new URL(url).openConnection(); conn.setDoInput(true); conn.setDoOutput(true); conn.setUseCaches(false); conn.setRequestProperty("Content-Type", "application/x-www-form-urlencoded"); DataOutputStream dos = new DataOutputStream(conn.getOutputStream()); Enumeration params = request.getParameterNames(); boolean first = true; while (params.hasMoreElements()) { String param = (String) params.nextElement(); if (!param.equals("proxyurl")) { if (first) { first = false; } else { dos.writeBytes("&"); } dos.writeBytes(URLEncoder.encode(param)); dos.writeBytes("="); dos.writeBytes(URLEncoder.encode(request.getParameter(param))); } } dos.close(); Reader in = new InputStreamReader(conn.getInputStream(), response.getCharacterEncoding()); response.setContentType(conn.getContentType()); response.setContentLength(conn.getContentLength()); Writer out = response.getWriter(); char[] buf = new char[256]; int len; while ((len = in.read(buf)) != -1) { out.write(buf, 0, len); } in.close(); out.close(); String log = request.getParameter("logging"); if (log != null && log.toLowerCase().equals("true")) logRequest(request); } | public Configuration(URL url) { InputStream in = null; try { load(in = url.openStream()); } catch (Exception e) { throw new RuntimeException("Could not load configuration from " + url, e); } finally { if (in != null) { try { in.close(); } catch (IOException ignore) { } } } } | 17,322 |
0 | public static boolean copy(FileSystem srcFS, Path src, FileSystem dstFS, Path dst, boolean deleteSource, boolean overwrite, Configuration conf) throws IOException { LOG.debug("[sgkim] copy - start"); dst = checkDest(src.getName(), dstFS, dst, overwrite); if (srcFS.getFileStatus(src).isDir()) { checkDependencies(srcFS, src, dstFS, dst); if (!dstFS.mkdirs(dst)) { return false; } FileStatus contents[] = srcFS.listStatus(src); for (int i = 0; i < contents.length; i++) { copy(srcFS, contents[i].getPath(), dstFS, new Path(dst, contents[i].getPath().getName()), deleteSource, overwrite, conf); } } else if (srcFS.isFile(src)) { InputStream in = null; OutputStream out = null; try { LOG.debug("[sgkim] srcFS: " + srcFS + ", src: " + src); in = srcFS.open(src); LOG.debug("[sgkim] dstFS: " + dstFS + ", dst: " + dst); out = dstFS.create(dst, overwrite); LOG.debug("[sgkim] copyBytes - start"); IOUtils.copyBytes(in, out, conf, true); LOG.debug("[sgkim] copyBytes - end"); } catch (IOException e) { IOUtils.closeStream(out); IOUtils.closeStream(in); throw e; } } else { throw new IOException(src.toString() + ": No such file or directory"); } LOG.debug("[sgkim] copy - end"); if (deleteSource) { return srcFS.delete(src, true); } else { return true; } } | public static String getInstanceUserdata() throws IOException { int retries = 0; while (true) { try { URL url = new URL("http://169.254.169.254/latest/user-data/"); InputStreamReader rdr = new InputStreamReader(url.openStream()); StringWriter wtr = new StringWriter(); char[] buf = new char[1024]; int bytes; while ((bytes = rdr.read(buf)) > -1) { if (bytes > 0) { wtr.write(buf, 0, bytes); } } rdr.close(); return wtr.toString(); } catch (IOException ex) { if (retries == 5) { logger.debug("Problem getting user data, retries exhausted..."); return null; } else { logger.debug("Problem getting user data, retrying..."); try { Thread.sleep((int) Math.pow(2.0, retries) * 1000); } catch (InterruptedException e) { } retries++; } } } } | 17,323 |
0 | private String createCSVFile(String fileName) throws FileNotFoundException, IOException { String csvFile = fileName + ".csv"; BufferedReader buf = new BufferedReader(new FileReader(fileName)); BufferedWriter out = new BufferedWriter(new FileWriter(csvFile)); String line; while ((line = buf.readLine()) != null) out.write(line + "\n"); buf.close(); out.close(); return csvFile; } | public NodeId generateTopicId(String topicName) { MessageDigest md = null; try { md = MessageDigest.getInstance("SHA"); } catch (NoSuchAlgorithmException e) { System.err.println("No SHA support!"); } md.update(topicName.getBytes()); byte[] digest = md.digest(); NodeId newId = new NodeId(digest); return newId; } | 17,324 |
1 | public boolean backupFile(File oldFile, File newFile) { boolean isBkupFileOK = false; FileChannel sourceChannel = null; FileChannel targetChannel = null; try { sourceChannel = new FileInputStream(oldFile).getChannel(); targetChannel = new FileOutputStream(newFile).getChannel(); targetChannel.transferFrom(sourceChannel, 0, sourceChannel.size()); } catch (IOException e) { logger.log(Level.SEVERE, "IO exception occurred while copying file", e); } finally { if ((newFile != null) && (newFile.exists()) && (newFile.length() > 0)) { isBkupFileOK = true; } try { if (sourceChannel != null) { sourceChannel.close(); } if (targetChannel != null) { targetChannel.close(); } } catch (IOException e) { logger.info("closing channels failed"); } } return isBkupFileOK; } | public void copyFile(String source_name, String dest_name) throws IOException { File source_file = new File(source_name); File destination_file = new File(dest_name); Reader source = null; Writer destination = null; char[] buffer; int bytes_read; try { if (!source_file.exists() || !source_file.isFile()) throw new FileCopyException("FileCopy: no such source file: " + source_name); if (!source_file.canRead()) throw new FileCopyException("FileCopy: source file " + "is unreadable: " + source_name); if (destination_file.exists()) { if (destination_file.isFile()) { DataInputStream in = new DataInputStream(System.in); String response; if (!destination_file.canWrite()) throw new FileCopyException("FileCopy: destination " + "file is unwriteable: " + dest_name); } else { throw new FileCopyException("FileCopy: destination " + "is not a file: " + dest_name); } } else { File parentdir = parent(destination_file); if (!parentdir.exists()) throw new FileCopyException("FileCopy: destination " + "directory doesn't exist: " + dest_name); if (!parentdir.canWrite()) throw new FileCopyException("FileCopy: destination " + "directory is unwriteable: " + dest_name); } source = new BufferedReader(new FileReader(source_file)); destination = new BufferedWriter(new FileWriter(destination_file)); buffer = new char[1024]; while (true) { bytes_read = source.read(buffer, 0, 1024); if (bytes_read == -1) break; destination.write(buffer, 0, bytes_read); } } finally { if (source != null) { try { source.close(); } catch (IOException e) { ; } } if (destination != null) { try { destination.close(); } catch (IOException e) { ; } } } } | 17,325 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public static void decompressGZIP(File gzip, File to, long skip) throws IOException { GZIPInputStream gis = null; BufferedOutputStream bos = null; try { bos = new BufferedOutputStream(new FileOutputStream(to)); FileInputStream fis = new FileInputStream(gzip); fis.skip(skip); gis = new GZIPInputStream(fis); final byte[] buffer = new byte[IO_BUFFER]; int read = -1; while ((read = gis.read(buffer)) != -1) { bos.write(buffer, 0, read); } } finally { try { gis.close(); } catch (Exception nope) { } try { bos.flush(); } catch (Exception nope) { } try { bos.close(); } catch (Exception nope) { } } } | 17,326 |
1 | public static void copyFile(File in, File out, boolean append) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out, append).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | public static void copy(File source, File target) { FileChannel in = null; FileChannel out = null; try { in = new FileInputStream(source).getChannel(); out = new FileOutputStream(target).getChannel(); ByteBuffer buffer = ByteBuffer.allocateDirect(BUFFER); while (in.read(buffer) != -1) { buffer.flip(); while (buffer.hasRemaining()) { out.write(buffer); } buffer.clear(); } } catch (IOException ex) { throw new RuntimeException(ex); } finally { close(in); close(out); } } | 17,327 |
0 | public static void downloadFromUrl(URL url, String localFilename, String userAgent) throws IOException { InputStream is = null; FileOutputStream fos = null; System.setProperty("java.net.useSystemProxies", "true"); try { URLConnection urlConn = url.openConnection(); if (userAgent != null) { urlConn.setRequestProperty("User-Agent", userAgent); } is = urlConn.getInputStream(); fos = new FileOutputStream(localFilename); byte[] buffer = new byte[4096]; int len; while ((len = is.read(buffer)) > 0) { fos.write(buffer, 0, len); } } finally { try { if (is != null) { is.close(); } } finally { if (fos != null) { fos.close(); } } } } | private String sha1(String s) { String encrypt = s; try { MessageDigest sha = MessageDigest.getInstance("SHA-1"); sha.update(s.getBytes()); byte[] digest = sha.digest(); final StringBuffer buffer = new StringBuffer(); for (int i = 0; i < digest.length; ++i) { final byte b = digest[i]; final int value = (b & 0x7F) + (b < 0 ? 128 : 0); buffer.append(value < 16 ? "0" : ""); buffer.append(Integer.toHexString(value)); } encrypt = buffer.toString(); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } return encrypt; } | 17,328 |
1 | protected String insertCommand(String command) throws ServletException { String digest; try { MessageDigest md = MessageDigest.getInstance(m_messagedigest_algorithm); md.update(command.getBytes()); byte bytes[] = new byte[20]; m_random.nextBytes(bytes); md.update(bytes); digest = bytesToHex(md.digest()); } catch (NoSuchAlgorithmException e) { throw new ServletException("NoSuchAlgorithmException while " + "attempting to generate graph ID: " + e); } String id = System.currentTimeMillis() + "-" + digest; m_map.put(id, command); return id; } | public static String getHash(String password) { try { MessageDigest digest = MessageDigest.getInstance("SHA"); digest.update(password.getBytes()); return new String(digest.digest()); } catch (NoSuchAlgorithmException e) { log.error("Hashing algorithm not found"); return password; } } | 17,329 |
1 | public long copyDirAllFilesToDirectory(String baseDirStr, String destDirStr) throws Exception { long plussQuotaSize = 0; if (baseDirStr.endsWith(sep)) { baseDirStr = baseDirStr.substring(0, baseDirStr.length() - 1); } if (destDirStr.endsWith(sep)) { destDirStr = destDirStr.substring(0, destDirStr.length() - 1); } FileUtils.getInstance().createDirectory(destDirStr); BufferedInputStream in = null; BufferedOutputStream out = null; byte dataBuff[] = new byte[bufferSize]; File baseDir = new File(baseDirStr); baseDir.mkdirs(); if (!baseDir.exists()) { createDirectory(baseDirStr); } if ((baseDir.exists()) && (baseDir.isDirectory())) { String[] entryList = baseDir.list(); if (entryList.length > 0) { for (int pos = 0; pos < entryList.length; pos++) { String entryName = entryList[pos]; String oldPathFileName = baseDirStr + sep + entryName; File entryFile = new File(oldPathFileName); if (entryFile.isFile()) { String newPathFileName = destDirStr + sep + entryName; File newFile = new File(newPathFileName); if (newFile.exists()) { plussQuotaSize -= newFile.length(); newFile.delete(); } in = new BufferedInputStream(new FileInputStream(oldPathFileName), bufferSize); out = new BufferedOutputStream(new FileOutputStream(newPathFileName), bufferSize); int readLen; while ((readLen = in.read(dataBuff)) > 0) { out.write(dataBuff, 0, readLen); plussQuotaSize += readLen; } out.flush(); in.close(); out.close(); } } } } else { throw new Exception("Base dir not exist ! baseDirStr = (" + baseDirStr + ")"); } return plussQuotaSize; } | public static void copy(File src, File dst) throws IOException { InputStream in = new FileInputStream(src); OutputStream out = new FileOutputStream(dst); byte[] buf = new byte[1024]; int len; while ((len = in.read(buf)) > 0) out.write(buf, 0, len); in.close(); out.close(); } | 17,330 |
1 | public final String encrypt(String input) throws Exception { try { MessageDigest messageDigest = (MessageDigest) MessageDigest.getInstance(algorithm).clone(); messageDigest.reset(); messageDigest.update(input.getBytes()); String output = convert(messageDigest.digest()); return output; } catch (Throwable ex) { if (logger.isDebugEnabled()) { logger.debug("Fatal Error while digesting input string", ex); } } return input; } | public static String encodePassword(String password, byte[] seed) throws NoSuchAlgorithmException, UnsupportedEncodingException { if (seed == null) { seed = new byte[12]; secureRandom.nextBytes(seed); } MessageDigest md = MessageDigest.getInstance("MD5"); md.update(seed); md.update(password.getBytes("UTF8")); byte[] digest = md.digest(); byte[] storedPassword = new byte[digest.length + 12]; System.arraycopy(seed, 0, storedPassword, 0, 12); System.arraycopy(digest, 0, storedPassword, 12, digest.length); return new sun.misc.BASE64Encoder().encode(storedPassword); } | 17,331 |
1 | public void copyFile(File in, File out) throws Exception { FileChannel ic = new FileInputStream(in).getChannel(); FileChannel oc = new FileOutputStream(out).getChannel(); ic.transferTo(0, ic.size(), oc); ic.close(); oc.close(); } | @Override protected void copyContent(String filename) throws IOException { InputStream in = null; try { in = LOADER.getResourceAsStream(RES_PKG + filename); ByteArrayOutputStream out = new ByteArrayOutputStream(); IOUtils.copy(in, out); setResponseData(out.toByteArray()); } finally { if (in != null) { in.close(); } } } | 17,332 |
0 | @Before public void BeforeTheTest() throws Exception { URL url = ProfileParserTest.class.getClassLoader().getResource("ca/uhn/hl7v2/conf/parser/tests/example_ack.xml"); URLConnection conn = url.openConnection(); InputStream instream = conn.getInputStream(); if (instream == null) throw new Exception("can't find the xml file"); BufferedReader in = new BufferedReader(new InputStreamReader(instream)); int tmp = 0; StringBuffer buf = new StringBuffer(); while ((tmp = in.read()) != -1) { buf.append((char) tmp); } profileString = buf.toString(); } | public static String generate(String source) { byte[] SHA = new byte[20]; try { MessageDigest digest = MessageDigest.getInstance("SHA-1"); digest.update(source.getBytes()); SHA = digest.digest(); } catch (NoSuchAlgorithmException e) { System.out.println("NO SUCH ALGORITHM EXCEPTION: " + e.getMessage()); } CommunicationLogger.warning("SHA1 DIGEST: " + SHA); return SHA.toString(); } | 17,333 |
1 | public static ByteBuffer join(ByteBuffer buffer1, ByteBuffer buffer2) { if (buffer2 == null || buffer2.remaining() == 0) return NIOUtils.copy(buffer1); if (buffer1 == null || buffer1.remaining() == 0) return NIOUtils.copy(buffer2); ByteBuffer buffer = ByteBuffer.allocate(buffer1.remaining() + buffer2.remaining()); buffer.put(buffer1); buffer.put(buffer2); buffer.flip(); return buffer; } | private void serveCGI(TinyCGI script) throws IOException, TinyWebThreadException { parseHTTPHeaders(); OutputStream cgiOut = null; File tempFile = null; try { if (script == null) sendError(500, "Internal Error", "Couldn't load script."); if (script instanceof TinyCGIHighVolume) { tempFile = File.createTempFile("cgi", null); cgiOut = new FileOutputStream(tempFile); } else { cgiOut = new ByteArrayOutputStream(); } script.service(inputStream, cgiOut, env); } catch (Exception cgie) { this.exceptionEncountered = cgie; if (tempFile != null) tempFile.delete(); if (clientSocket == null) { return; } else if (cgie instanceof TinyCGIException) { TinyCGIException tce = (TinyCGIException) cgie; sendError(tce.getStatus(), tce.getTitle(), tce.getText(), tce.getOtherHeaders()); } else { StringWriter w = new StringWriter(); cgie.printStackTrace(new PrintWriter(w)); sendError(500, "CGI Error", "Error running script: " + "<PRE>" + w.toString() + "</PRE>"); } } finally { if (script != null) doneWithScript(script); } InputStream cgiResults = null; long totalSize = 0; if (tempFile == null) { byte[] results = ((ByteArrayOutputStream) cgiOut).toByteArray(); totalSize = results.length; cgiResults = new ByteArrayInputStream(results); } else { cgiOut.close(); totalSize = tempFile.length(); cgiResults = new FileInputStream(tempFile); } String contentType = null, statusString = "OK", line, header; StringBuffer otherHeaders = new StringBuffer(); StringBuffer text = new StringBuffer(); int status = 200; int headerLength = 0; while (true) { line = readLine(cgiResults, true); headerLength += line.length(); if (line.charAt(0) == '\r' || line.charAt(0) == '\n') break; header = parseHeader(line, text); if (header.toUpperCase().equals("STATUS")) { statusString = text.toString(); status = Integer.parseInt(statusString.substring(0, 3)); statusString = statusString.substring(4); } else if (header.toUpperCase().equals("CONTENT-TYPE")) contentType = text.toString(); else { if (header.toUpperCase().equals("LOCATION")) status = 302; otherHeaders.append(header).append(": ").append(text.toString()).append(CRLF); } } sendHeaders(status, statusString, contentType, totalSize - headerLength, -1, otherHeaders.toString()); byte[] buf = new byte[2048]; int bytesRead; while ((bytesRead = cgiResults.read(buf)) != -1) outputStream.write(buf, 0, bytesRead); outputStream.flush(); try { cgiResults.close(); if (tempFile != null) tempFile.delete(); } catch (IOException ioe) { } } | 17,334 |
1 | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | @SuppressWarnings("unchecked") protected void processDownloadAction(HttpServletRequest request, HttpServletResponse response) throws Exception { File transformationFile = new File(xslBase, "file-info.xsl"); HashMap<String, Object> params = new HashMap<String, Object>(); params.putAll(request.getParameterMap()); params.put("{" + Definitions.CONFIGURATION_NAMESPACE + "}configuration", configuration); params.put("{" + Definitions.REQUEST_NAMESPACE + "}request", request); params.put("{" + Definitions.RESPONSE_NAMESPACE + "}response", response); params.put("{" + Definitions.SESSION_NAMESPACE + "}session", request.getSession()); params.put("{" + Definitions.INFOFUZE_NAMESPACE + "}development-mode", new Boolean(Config.getInstance().isDevelopmentMode())); Transformer transformer = new Transformer(); transformer.setTransformationFile(transformationFile); transformer.setParams(params); transformer.setTransformMode(TransformMode.NORMAL); transformer.setConfiguration(configuration); transformer.setErrorListener(new TransformationErrorListener(response)); transformer.setLogInfo(false); DataSourceIf dataSource = new NullSource(); Document fileInfoDoc = XmlUtils.getEmptyDOM(); DOMResult result = new DOMResult(fileInfoDoc); transformer.transform((Source) dataSource, result); Element documentElement = fileInfoDoc.getDocumentElement(); if (documentElement.getLocalName().equals("null")) { response.sendError(HttpServletResponse.SC_UNAUTHORIZED); return; } InputStream is = null; try { XPath xpath = XPathFactory.newInstance().newXPath(); String sourceType = XPathUtils.getStringValue(xpath, "source-type", documentElement, null); String location = XPathUtils.getStringValue(xpath, "location", documentElement, null); String fileName = XPathUtils.getStringValue(xpath, "file-name", documentElement, null); String mimeType = XPathUtils.getStringValue(xpath, "mime-type", documentElement, null); String encoding = XPathUtils.getStringValue(xpath, "encoding", documentElement, null); if (StringUtils.equals(sourceType, "cifsSource")) { String domain = XPathUtils.getStringValue(xpath, "domain", documentElement, null); String userName = XPathUtils.getStringValue(xpath, "username", documentElement, null); String password = XPathUtils.getStringValue(xpath, "password", documentElement, null); URI uri = new URI(location); if (StringUtils.isNotBlank(userName)) { String userInfo = ""; if (StringUtils.isNotBlank(domain)) { userInfo = userInfo + domain + ";"; } userInfo = userInfo + userName; if (StringUtils.isNotBlank(password)) { userInfo = userInfo + ":" + password; } uri = new URI(uri.getScheme(), userInfo, uri.getHost(), uri.getPort(), uri.getPath(), uri.getQuery(), uri.getFragment()); } SmbFile smbFile = new SmbFile(uri.toURL()); is = new SmbFileInputStream(smbFile); } else if (StringUtils.equals(sourceType, "localFileSystemSource")) { File file = new File(location); is = new FileInputStream(file); } else { logger.error("Source type \"" + ((sourceType != null) ? sourceType : "") + "\" not supported"); response.sendError(HttpServletResponse.SC_INTERNAL_SERVER_ERROR); return; } if (StringUtils.isBlank(mimeType) && StringUtils.isBlank(encoding)) { response.setContentType(Definitions.MIMETYPE_BINARY); } else if (StringUtils.isBlank(encoding)) { response.setContentType(mimeType); } else { response.setContentType(mimeType + ";charset=" + encoding); } if (request.getParameterMap().containsKey(Definitions.REQUEST_PARAMNAME_DOWNLOAD)) { response.setHeader("Content-Disposition", "attachment; filename=" + fileName); } IOUtils.copy(new BufferedInputStream(is), response.getOutputStream()); } finally { if (is != null) { is.close(); } } } | 17,335 |
1 | public static String generateHash(final String sText, final String sAlgo) throws NoSuchAlgorithmException { final MessageDigest md = MessageDigest.getInstance(sAlgo); md.update(sText.getBytes()); final Formatter formatter = new Formatter(); for (final Byte curByte : md.digest()) formatter.format("%x", curByte); return formatter.toString(); } | public static String md5Encode(String s) { try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(s.getBytes()); return toHexString(md.digest()); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); return s; } } | 17,336 |
1 | public void actionPerformed(ActionEvent e) { if (saveForWebChooser == null) { ExtensionFileFilter fileFilter = new ExtensionFileFilter("HTML files"); fileFilter.addExtension("html"); saveForWebChooser = new JFileChooser(); saveForWebChooser.setFileFilter(fileFilter); saveForWebChooser.setDialogTitle("Save for Web..."); saveForWebChooser.setCurrentDirectory(new File(Config.getRecentDirectory("recentSaveForWebDirectory"))); } if (saveForWebChooser.showSaveDialog(Main.this) == JFileChooser.APPROVE_OPTION) { Config.setRecentDirectory("recentSaveForWebDirectory", saveForWebChooser.getCurrentDirectory().getAbsolutePath()); File pathFile = saveForWebChooser.getSelectedFile().getParentFile(); String name = saveForWebChooser.getSelectedFile().getName(); if (!name.toLowerCase().endsWith(".html") && name.indexOf('.') == -1) { name = name + ".html"; } String resource = MIDletClassLoader.getClassResourceName(this.getClass().getName()); URL url = this.getClass().getClassLoader().getResource(resource); String path = url.getPath(); int prefix = path.indexOf(':'); String mainJarFileName = path.substring(prefix + 1, path.length() - resource.length()); File appletJarDir = new File(new File(mainJarFileName).getParent(), "lib"); File appletJarFile = new File(appletJarDir, "microemu-javase-applet.jar"); if (!appletJarFile.exists()) { appletJarFile = null; } if (appletJarFile == null) { } if (appletJarFile == null) { ExtensionFileFilter fileFilter = new ExtensionFileFilter("JAR packages"); fileFilter.addExtension("jar"); JFileChooser appletChooser = new JFileChooser(); appletChooser.setFileFilter(fileFilter); appletChooser.setDialogTitle("Select MicroEmulator applet jar package..."); appletChooser.setCurrentDirectory(new File(Config.getRecentDirectory("recentAppletJarDirectory"))); if (appletChooser.showOpenDialog(Main.this) == JFileChooser.APPROVE_OPTION) { Config.setRecentDirectory("recentAppletJarDirectory", appletChooser.getCurrentDirectory().getAbsolutePath()); appletJarFile = appletChooser.getSelectedFile(); } else { return; } } JadMidletEntry jadMidletEntry; Iterator it = common.jad.getMidletEntries().iterator(); if (it.hasNext()) { jadMidletEntry = (JadMidletEntry) it.next(); } else { Message.error("MIDlet Suite has no entries"); return; } String midletInput = common.jad.getJarURL(); DeviceEntry deviceInput = selectDevicePanel.getSelectedDeviceEntry(); if (deviceInput != null && deviceInput.getDescriptorLocation().equals(DeviceImpl.DEFAULT_LOCATION)) { deviceInput = null; } File htmlOutputFile = new File(pathFile, name); if (!allowOverride(htmlOutputFile)) { return; } File appletPackageOutputFile = new File(pathFile, "microemu-javase-applet.jar"); if (!allowOverride(appletPackageOutputFile)) { return; } File midletOutputFile = new File(pathFile, midletInput.substring(midletInput.lastIndexOf("/") + 1)); if (!allowOverride(midletOutputFile)) { return; } File deviceOutputFile = null; String deviceDescriptorLocation = null; if (deviceInput != null) { deviceOutputFile = new File(pathFile, deviceInput.getFileName()); if (!allowOverride(deviceOutputFile)) { return; } deviceDescriptorLocation = deviceInput.getDescriptorLocation(); } try { AppletProducer.createHtml(htmlOutputFile, (DeviceImpl) DeviceFactory.getDevice(), jadMidletEntry.getClassName(), midletOutputFile, appletPackageOutputFile, deviceOutputFile); AppletProducer.createMidlet(new URL(midletInput), midletOutputFile); IOUtils.copyFile(appletJarFile, appletPackageOutputFile); if (deviceInput != null) { IOUtils.copyFile(new File(Config.getConfigPath(), deviceInput.getFileName()), deviceOutputFile); } } catch (IOException ex) { Logger.error(ex); } } } | protected ActionForward doExecute(ActionMapping mapping, ActionForm form, HttpServletRequest request, HttpServletResponse response) throws Exception { ActionMessages errors = new ActionMessages(); try { boolean isMultipart = FileUpload.isMultipartContent(request); Store storeInstance = getStoreInstance(request); if (isMultipart) { Map fields = new HashMap(); Vector files = new Vector(); List items = diskFileUpload.parseRequest(request); Iterator iter = items.iterator(); while (iter.hasNext()) { FileItem item = (FileItem) iter.next(); if (item.isFormField()) { fields.put(item.getFieldName(), item.getString()); } else { if (!StringUtils.isBlank(item.getName())) { ByteArrayOutputStream baos = null; try { baos = new ByteArrayOutputStream(); IOUtils.copy(item.getInputStream(), baos); MailPartObj part = new MailPartObj(); part.setAttachent(baos.toByteArray()); part.setContentType(item.getContentType()); part.setName(item.getName()); part.setSize(item.getSize()); files.addElement(part); } catch (Exception ex) { } finally { IOUtils.closeQuietly(baos); } } } } if (files.size() > 0) { storeInstance.send(files, 0, Charset.defaultCharset().displayName()); } } else { errors.add("general", new ActionMessage(ExceptionCode.ERROR_MESSAGES_PREFIX + "mail.send", "The form is null")); request.setAttribute("exception", "The form is null"); request.setAttribute("newLocation", null); doTrace(request, DLog.ERROR, getClass(), "The form is null"); } } catch (Exception ex) { String errorMessage = ExceptionUtilities.parseMessage(ex); if (errorMessage == null) { errorMessage = "NullPointerException"; } errors.add("general", new ActionMessage(ExceptionCode.ERROR_MESSAGES_PREFIX + "general", errorMessage)); request.setAttribute("exception", errorMessage); doTrace(request, DLog.ERROR, getClass(), errorMessage); } finally { } if (errors.isEmpty()) { doTrace(request, DLog.INFO, getClass(), "OK"); return mapping.findForward(Constants.ACTION_SUCCESS_FORWARD); } else { saveErrors(request, errors); return mapping.findForward(Constants.ACTION_FAIL_FORWARD); } } | 17,337 |
1 | public static void copyFile(File sourceFile, File destFile) throws IOException { if (!destFile.exists()) { destFile.createNewFile(); } FileChannel source = null; FileChannel destination = null; try { source = new FileInputStream(sourceFile).getChannel(); destination = new FileOutputStream(destFile).getChannel(); destination.transferFrom(source, 0, source.size()); } finally { if (source != null) { source.close(); } if (destination != null) { destination.close(); } } } | public static void main(String argv[]) { Matrix A, B, C, Z, O, I, R, S, X, SUB, M, T, SQ, DEF, SOL; int errorCount = 0; int warningCount = 0; double tmp, s; double[] columnwise = { 1., 2., 3., 4., 5., 6., 7., 8., 9., 10., 11., 12. }; double[] rowwise = { 1., 4., 7., 10., 2., 5., 8., 11., 3., 6., 9., 12. }; double[][] avals = { { 1., 4., 7., 10. }, { 2., 5., 8., 11. }, { 3., 6., 9., 12. } }; double[][] rankdef = avals; double[][] tvals = { { 1., 2., 3. }, { 4., 5., 6. }, { 7., 8., 9. }, { 10., 11., 12. } }; double[][] subavals = { { 5., 8., 11. }, { 6., 9., 12. } }; double[][] rvals = { { 1., 4., 7. }, { 2., 5., 8., 11. }, { 3., 6., 9., 12. } }; double[][] pvals = { { 4., 1., 1. }, { 1., 2., 3. }, { 1., 3., 6. } }; double[][] ivals = { { 1., 0., 0., 0. }, { 0., 1., 0., 0. }, { 0., 0., 1., 0. } }; double[][] evals = { { 0., 1., 0., 0. }, { 1., 0., 2.e-7, 0. }, { 0., -2.e-7, 0., 1. }, { 0., 0., 1., 0. } }; double[][] square = { { 166., 188., 210. }, { 188., 214., 240. }, { 210., 240., 270. } }; double[][] sqSolution = { { 13. }, { 15. } }; double[][] condmat = { { 1., 3. }, { 7., 9. } }; int rows = 3, cols = 4; int invalidld = 5; int raggedr = 0; int raggedc = 4; int validld = 3; int nonconformld = 4; int ib = 1, ie = 2, jb = 1, je = 3; int[] rowindexset = { 1, 2 }; int[] badrowindexset = { 1, 3 }; int[] columnindexset = { 1, 2, 3 }; int[] badcolumnindexset = { 1, 2, 4 }; double columnsummax = 33.; double rowsummax = 30.; double sumofdiagonals = 15; double sumofsquares = 650; print("\nTesting constructors and constructor-like methods...\n"); try { A = new Matrix(columnwise, invalidld); errorCount = try_failure(errorCount, "Catch invalid length in packed constructor... ", "exception not thrown for invalid input"); } catch (IllegalArgumentException e) { try_success("Catch invalid length in packed constructor... ", e.getMessage()); } try { A = new Matrix(rvals); tmp = A.get(raggedr, raggedc); } catch (IllegalArgumentException e) { try_success("Catch ragged input to default constructor... ", e.getMessage()); } catch (java.lang.ArrayIndexOutOfBoundsException e) { errorCount = try_failure(errorCount, "Catch ragged input to constructor... ", "exception not thrown in construction...ArrayIndexOutOfBoundsException thrown later"); } try { A = Matrix.constructWithCopy(rvals); tmp = A.get(raggedr, raggedc); } catch (IllegalArgumentException e) { try_success("Catch ragged input to constructWithCopy... ", e.getMessage()); } catch (java.lang.ArrayIndexOutOfBoundsException e) { errorCount = try_failure(errorCount, "Catch ragged input to constructWithCopy... ", "exception not thrown in construction...ArrayIndexOutOfBoundsException thrown later"); } A = new Matrix(columnwise, validld); B = new Matrix(avals); tmp = B.get(0, 0); avals[0][0] = 0.0; C = B.minus(A); avals[0][0] = tmp; B = Matrix.constructWithCopy(avals); tmp = B.get(0, 0); avals[0][0] = 0.0; if ((tmp - B.get(0, 0)) != 0.0) { errorCount = try_failure(errorCount, "constructWithCopy... ", "copy not effected... data visible outside"); } else { try_success("constructWithCopy... ", ""); } avals[0][0] = columnwise[0]; I = new Matrix(ivals); try { check(I, Matrix.identity(3, 4)); try_success("identity... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "identity... ", "identity Matrix not successfully created"); } print("\nTesting access methods...\n"); B = new Matrix(avals); if (B.getRowDimension() != rows) { errorCount = try_failure(errorCount, "getRowDimension... ", ""); } else { try_success("getRowDimension... ", ""); } if (B.getColumnDimension() != cols) { errorCount = try_failure(errorCount, "getColumnDimension... ", ""); } else { try_success("getColumnDimension... ", ""); } B = new Matrix(avals); double[][] barray = B.getArray(); if (barray != avals) { errorCount = try_failure(errorCount, "getArray... ", ""); } else { try_success("getArray... ", ""); } barray = B.getArrayCopy(); if (barray == avals) { errorCount = try_failure(errorCount, "getArrayCopy... ", "data not (deep) copied"); } try { check(barray, avals); try_success("getArrayCopy... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "getArrayCopy... ", "data not successfully (deep) copied"); } double[] bpacked = B.getColumnPackedCopy(); try { check(bpacked, columnwise); try_success("getColumnPackedCopy... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "getColumnPackedCopy... ", "data not successfully (deep) copied by columns"); } bpacked = B.getRowPackedCopy(); try { check(bpacked, rowwise); try_success("getRowPackedCopy... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "getRowPackedCopy... ", "data not successfully (deep) copied by rows"); } try { tmp = B.get(B.getRowDimension(), B.getColumnDimension() - 1); errorCount = try_failure(errorCount, "get(int,int)... ", "OutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { tmp = B.get(B.getRowDimension() - 1, B.getColumnDimension()); errorCount = try_failure(errorCount, "get(int,int)... ", "OutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("get(int,int)... OutofBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "get(int,int)... ", "OutOfBoundsException expected but not thrown"); } try { if (B.get(B.getRowDimension() - 1, B.getColumnDimension() - 1) != avals[B.getRowDimension() - 1][B.getColumnDimension() - 1]) { errorCount = try_failure(errorCount, "get(int,int)... ", "Matrix entry (i,j) not successfully retreived"); } else { try_success("get(int,int)... ", ""); } } catch (java.lang.ArrayIndexOutOfBoundsException e) { errorCount = try_failure(errorCount, "get(int,int)... ", "Unexpected ArrayIndexOutOfBoundsException"); } SUB = new Matrix(subavals); try { M = B.getMatrix(ib, ie + B.getRowDimension() + 1, jb, je); errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { M = B.getMatrix(ib, ie, jb, je + B.getColumnDimension() + 1); errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("getMatrix(int,int,int,int)... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { M = B.getMatrix(ib, ie, jb, je); try { check(SUB, M); try_success("getMatrix(int,int,int,int)... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "submatrix not successfully retreived"); } } catch (java.lang.ArrayIndexOutOfBoundsException e) { errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "Unexpected ArrayIndexOutOfBoundsException"); } try { M = B.getMatrix(ib, ie, badcolumnindexset); errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { M = B.getMatrix(ib, ie + B.getRowDimension() + 1, columnindexset); errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("getMatrix(int,int,int[])... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { M = B.getMatrix(ib, ie, columnindexset); try { check(SUB, M); try_success("getMatrix(int,int,int[])... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "submatrix not successfully retreived"); } } catch (java.lang.ArrayIndexOutOfBoundsException e) { errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "Unexpected ArrayIndexOutOfBoundsException"); } try { M = B.getMatrix(badrowindexset, jb, je); errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { M = B.getMatrix(rowindexset, jb, je + B.getColumnDimension() + 1); errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("getMatrix(int[],int,int)... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { M = B.getMatrix(rowindexset, jb, je); try { check(SUB, M); try_success("getMatrix(int[],int,int)... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "submatrix not successfully retreived"); } } catch (java.lang.ArrayIndexOutOfBoundsException e) { errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "Unexpected ArrayIndexOutOfBoundsException"); } try { M = B.getMatrix(badrowindexset, columnindexset); errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { M = B.getMatrix(rowindexset, badcolumnindexset); errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("getMatrix(int[],int[])... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { M = B.getMatrix(rowindexset, columnindexset); try { check(SUB, M); try_success("getMatrix(int[],int[])... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "submatrix not successfully retreived"); } } catch (java.lang.ArrayIndexOutOfBoundsException e) { errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "Unexpected ArrayIndexOutOfBoundsException"); } try { B.set(B.getRowDimension(), B.getColumnDimension() - 1, 0.); errorCount = try_failure(errorCount, "set(int,int,double)... ", "OutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { B.set(B.getRowDimension() - 1, B.getColumnDimension(), 0.); errorCount = try_failure(errorCount, "set(int,int,double)... ", "OutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("set(int,int,double)... OutofBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "set(int,int,double)... ", "OutOfBoundsException expected but not thrown"); } try { B.set(ib, jb, 0.); tmp = B.get(ib, jb); try { check(tmp, 0.); try_success("set(int,int,double)... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "set(int,int,double)... ", "Matrix element not successfully set"); } } catch (java.lang.ArrayIndexOutOfBoundsException e1) { errorCount = try_failure(errorCount, "set(int,int,double)... ", "Unexpected ArrayIndexOutOfBoundsException"); } M = new Matrix(2, 3, 0.); try { B.setMatrix(ib, ie + B.getRowDimension() + 1, jb, je, M); errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { B.setMatrix(ib, ie, jb, je + B.getColumnDimension() + 1, M); errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("setMatrix(int,int,int,int,Matrix)... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { B.setMatrix(ib, ie, jb, je, M); try { check(M.minus(B.getMatrix(ib, ie, jb, je)), M); try_success("setMatrix(int,int,int,int,Matrix)... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "submatrix not successfully set"); } B.setMatrix(ib, ie, jb, je, SUB); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "Unexpected ArrayIndexOutOfBoundsException"); } try { B.setMatrix(ib, ie + B.getRowDimension() + 1, columnindexset, M); errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { B.setMatrix(ib, ie, badcolumnindexset, M); errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("setMatrix(int,int,int[],Matrix)... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { B.setMatrix(ib, ie, columnindexset, M); try { check(M.minus(B.getMatrix(ib, ie, columnindexset)), M); try_success("setMatrix(int,int,int[],Matrix)... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "submatrix not successfully set"); } B.setMatrix(ib, ie, jb, je, SUB); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "Unexpected ArrayIndexOutOfBoundsException"); } try { B.setMatrix(rowindexset, jb, je + B.getColumnDimension() + 1, M); errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { B.setMatrix(badrowindexset, jb, je, M); errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("setMatrix(int[],int,int,Matrix)... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { B.setMatrix(rowindexset, jb, je, M); try { check(M.minus(B.getMatrix(rowindexset, jb, je)), M); try_success("setMatrix(int[],int,int,Matrix)... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "submatrix not successfully set"); } B.setMatrix(ib, ie, jb, je, SUB); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "Unexpected ArrayIndexOutOfBoundsException"); } try { B.setMatrix(rowindexset, badcolumnindexset, M); errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { B.setMatrix(badrowindexset, columnindexset, M); errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("setMatrix(int[],int[],Matrix)... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { B.setMatrix(rowindexset, columnindexset, M); try { check(M.minus(B.getMatrix(rowindexset, columnindexset)), M); try_success("setMatrix(int[],int[],Matrix)... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "submatrix not successfully set"); } } catch (java.lang.ArrayIndexOutOfBoundsException e1) { errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "Unexpected ArrayIndexOutOfBoundsException"); } print("\nTesting array-like methods...\n"); S = new Matrix(columnwise, nonconformld); R = Matrix.random(A.getRowDimension(), A.getColumnDimension()); A = R; try { S = A.minus(S); errorCount = try_failure(errorCount, "minus conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("minus conformance check... ", ""); } if (A.minus(R).norm1() != 0.) { errorCount = try_failure(errorCount, "minus... ", "(difference of identical Matrices is nonzero,\nSubsequent use of minus should be suspect)"); } else { try_success("minus... ", ""); } A = R.copy(); A.minusEquals(R); Z = new Matrix(A.getRowDimension(), A.getColumnDimension()); try { A.minusEquals(S); errorCount = try_failure(errorCount, "minusEquals conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("minusEquals conformance check... ", ""); } if (A.minus(Z).norm1() != 0.) { errorCount = try_failure(errorCount, "minusEquals... ", "(difference of identical Matrices is nonzero,\nSubsequent use of minus should be suspect)"); } else { try_success("minusEquals... ", ""); } A = R.copy(); B = Matrix.random(A.getRowDimension(), A.getColumnDimension()); C = A.minus(B); try { S = A.plus(S); errorCount = try_failure(errorCount, "plus conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("plus conformance check... ", ""); } try { check(C.plus(B), A); try_success("plus... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "plus... ", "(C = A - B, but C + B != A)"); } C = A.minus(B); C.plusEquals(B); try { A.plusEquals(S); errorCount = try_failure(errorCount, "plusEquals conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("plusEquals conformance check... ", ""); } try { check(C, A); try_success("plusEquals... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "plusEquals... ", "(C = A - B, but C = C + B != A)"); } A = R.uminus(); try { check(A.plus(R), Z); try_success("uminus... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "uminus... ", "(-A + A != zeros)"); } A = R.copy(); O = new Matrix(A.getRowDimension(), A.getColumnDimension(), 1.0); C = A.arrayLeftDivide(R); try { S = A.arrayLeftDivide(S); errorCount = try_failure(errorCount, "arrayLeftDivide conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("arrayLeftDivide conformance check... ", ""); } try { check(C, O); try_success("arrayLeftDivide... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "arrayLeftDivide... ", "(M.\\M != ones)"); } try { A.arrayLeftDivideEquals(S); errorCount = try_failure(errorCount, "arrayLeftDivideEquals conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("arrayLeftDivideEquals conformance check... ", ""); } A.arrayLeftDivideEquals(R); try { check(A, O); try_success("arrayLeftDivideEquals... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "arrayLeftDivideEquals... ", "(M.\\M != ones)"); } A = R.copy(); try { A.arrayRightDivide(S); errorCount = try_failure(errorCount, "arrayRightDivide conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("arrayRightDivide conformance check... ", ""); } C = A.arrayRightDivide(R); try { check(C, O); try_success("arrayRightDivide... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "arrayRightDivide... ", "(M./M != ones)"); } try { A.arrayRightDivideEquals(S); errorCount = try_failure(errorCount, "arrayRightDivideEquals conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("arrayRightDivideEquals conformance check... ", ""); } A.arrayRightDivideEquals(R); try { check(A, O); try_success("arrayRightDivideEquals... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "arrayRightDivideEquals... ", "(M./M != ones)"); } A = R.copy(); B = Matrix.random(A.getRowDimension(), A.getColumnDimension()); try { S = A.arrayTimes(S); errorCount = try_failure(errorCount, "arrayTimes conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("arrayTimes conformance check... ", ""); } C = A.arrayTimes(B); try { check(C.arrayRightDivideEquals(B), A); try_success("arrayTimes... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "arrayTimes... ", "(A = R, C = A.*B, but C./B != A)"); } try { A.arrayTimesEquals(S); errorCount = try_failure(errorCount, "arrayTimesEquals conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("arrayTimesEquals conformance check... ", ""); } A.arrayTimesEquals(B); try { check(A.arrayRightDivideEquals(B), R); try_success("arrayTimesEquals... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "arrayTimesEquals... ", "(A = R, A = A.*B, but A./B != R)"); } print("\nTesting I/O methods...\n"); try { DecimalFormat fmt = new DecimalFormat("0.0000E00"); fmt.setDecimalFormatSymbols(new DecimalFormatSymbols(Locale.US)); PrintWriter FILE = new PrintWriter(new FileOutputStream("JamaTestMatrix.out")); A.print(FILE, fmt, 10); FILE.close(); R = Matrix.read(new BufferedReader(new FileReader("JamaTestMatrix.out"))); if (A.minus(R).norm1() < .001) { try_success("print()/read()...", ""); } else { errorCount = try_failure(errorCount, "print()/read()...", "Matrix read from file does not match Matrix printed to file"); } } catch (java.io.IOException ioe) { warningCount = try_warning(warningCount, "print()/read()...", "unexpected I/O error, unable to run print/read test; check write permission in current directory and retry"); } catch (Exception e) { try { e.printStackTrace(System.out); warningCount = try_warning(warningCount, "print()/read()...", "Formatting error... will try JDK1.1 reformulation..."); DecimalFormat fmt = new DecimalFormat("0.0000"); PrintWriter FILE = new PrintWriter(new FileOutputStream("JamaTestMatrix.out")); A.print(FILE, fmt, 10); FILE.close(); R = Matrix.read(new BufferedReader(new FileReader("JamaTestMatrix.out"))); if (A.minus(R).norm1() < .001) { try_success("print()/read()...", ""); } else { errorCount = try_failure(errorCount, "print()/read() (2nd attempt) ...", "Matrix read from file does not match Matrix printed to file"); } } catch (java.io.IOException ioe) { warningCount = try_warning(warningCount, "print()/read()...", "unexpected I/O error, unable to run print/read test; check write permission in current directory and retry"); } } R = Matrix.random(A.getRowDimension(), A.getColumnDimension()); String tmpname = "TMPMATRIX.serial"; try { ObjectOutputStream out = new ObjectOutputStream(new FileOutputStream(tmpname)); out.writeObject(R); ObjectInputStream sin = new ObjectInputStream(new FileInputStream(tmpname)); A = (Matrix) sin.readObject(); try { check(A, R); try_success("writeObject(Matrix)/readObject(Matrix)...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "writeObject(Matrix)/readObject(Matrix)...", "Matrix not serialized correctly"); } } catch (java.io.IOException ioe) { warningCount = try_warning(warningCount, "writeObject()/readObject()...", "unexpected I/O error, unable to run serialization test; check write permission in current directory and retry"); } catch (Exception e) { errorCount = try_failure(errorCount, "writeObject(Matrix)/readObject(Matrix)...", "unexpected error in serialization test"); } print("\nTesting linear algebra methods...\n"); A = new Matrix(columnwise, 3); T = new Matrix(tvals); T = A.transpose(); try { check(A.transpose(), T); try_success("transpose...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "transpose()...", "transpose unsuccessful"); } A.transpose(); try { check(A.norm1(), columnsummax); try_success("norm1...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "norm1()...", "incorrect norm calculation"); } try { check(A.normInf(), rowsummax); try_success("normInf()...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "normInf()...", "incorrect norm calculation"); } try { check(A.normF(), Math.sqrt(sumofsquares)); try_success("normF...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "normF()...", "incorrect norm calculation"); } try { check(A.trace(), sumofdiagonals); try_success("trace()...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "trace()...", "incorrect trace calculation"); } try { check(A.getMatrix(0, A.getRowDimension() - 1, 0, A.getRowDimension() - 1).det(), 0.); try_success("det()...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "det()...", "incorrect determinant calculation"); } SQ = new Matrix(square); try { check(A.times(A.transpose()), SQ); try_success("times(Matrix)...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "times(Matrix)...", "incorrect Matrix-Matrix product calculation"); } try { check(A.times(0.), Z); try_success("times(double)...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "times(double)...", "incorrect Matrix-scalar product calculation"); } A = new Matrix(columnwise, 4); QRDecomposition QR = A.qr(); R = QR.getR(); try { check(A, QR.getQ().times(R)); try_success("QRDecomposition...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "QRDecomposition...", "incorrect QR decomposition calculation"); } SingularValueDecomposition SVD = A.svd(); try { check(A, SVD.getU().times(SVD.getS().times(SVD.getV().transpose()))); try_success("SingularValueDecomposition...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "SingularValueDecomposition...", "incorrect singular value decomposition calculation"); } DEF = new Matrix(rankdef); try { check(DEF.rank(), Math.min(DEF.getRowDimension(), DEF.getColumnDimension()) - 1); try_success("rank()...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "rank()...", "incorrect rank calculation"); } B = new Matrix(condmat); SVD = B.svd(); double[] singularvalues = SVD.getSingularValues(); try { check(B.cond(), singularvalues[0] / singularvalues[Math.min(B.getRowDimension(), B.getColumnDimension()) - 1]); try_success("cond()...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "cond()...", "incorrect condition number calculation"); } int n = A.getColumnDimension(); A = A.getMatrix(0, n - 1, 0, n - 1); A.set(0, 0, 0.); LUDecomposition LU = A.lu(); try { check(A.getMatrix(LU.getPivot(), 0, n - 1), LU.getL().times(LU.getU())); try_success("LUDecomposition...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "LUDecomposition...", "incorrect LU decomposition calculation"); } X = A.inverse(); try { check(A.times(X), Matrix.identity(3, 3)); try_success("inverse()...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "inverse()...", "incorrect inverse calculation"); } O = new Matrix(SUB.getRowDimension(), 1, 1.0); SOL = new Matrix(sqSolution); SQ = SUB.getMatrix(0, SUB.getRowDimension() - 1, 0, SUB.getRowDimension() - 1); try { check(SQ.solve(SOL), O); try_success("solve()...", ""); } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "solve()...", e1.getMessage()); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "solve()...", e.getMessage()); } A = new Matrix(pvals); CholeskyDecomposition Chol = A.chol(); Matrix L = Chol.getL(); try { check(A, L.times(L.transpose())); try_success("CholeskyDecomposition...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "CholeskyDecomposition...", "incorrect Cholesky decomposition calculation"); } X = Chol.solve(Matrix.identity(3, 3)); try { check(A.times(X), Matrix.identity(3, 3)); try_success("CholeskyDecomposition solve()...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "CholeskyDecomposition solve()...", "incorrect Choleskydecomposition solve calculation"); } EigenvalueDecomposition Eig = A.eig(); Matrix D = Eig.getD(); Matrix V = Eig.getV(); try { check(A.times(V), V.times(D)); try_success("EigenvalueDecomposition (symmetric)...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "EigenvalueDecomposition (symmetric)...", "incorrect symmetric Eigenvalue decomposition calculation"); } A = new Matrix(evals); Eig = A.eig(); D = Eig.getD(); V = Eig.getV(); try { check(A.times(V), V.times(D)); try_success("EigenvalueDecomposition (nonsymmetric)...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "EigenvalueDecomposition (nonsymmetric)...", "incorrect nonsymmetric Eigenvalue decomposition calculation"); } print("\nTestMatrix completed.\n"); print("Total errors reported: " + Integer.toString(errorCount) + "\n"); print("Total warnings reported: " + Integer.toString(warningCount) + "\n"); } | 17,338 |
1 | public MemoryTextBody(InputStream is, String mimeCharset) throws IOException { this.mimeCharset = mimeCharset; TempPath tempPath = TempStorage.getInstance().getRootTempPath(); ByteArrayOutputStream out = new ByteArrayOutputStream(); IOUtils.copy(is, out); out.close(); tempFile = out.toByteArray(); } | public File takeFile(File f, String prefix, String suffix) throws IOException { File nf = createNewFile(prefix, suffix); FileInputStream fis = new FileInputStream(f); FileChannel fic = fis.getChannel(); FileOutputStream fos = new FileOutputStream(nf); FileChannel foc = fos.getChannel(); foc.transferFrom(fic, 0, fic.size()); foc.close(); fic.close(); f.delete(); return nf; } | 17,339 |
1 | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | public boolean validateZipFile(File zipFile) { String tempdir = Config.CONTEXT.getRealPath(getBackupTempFilePath()); try { deleteTempFiles(); File ftempDir = new File(tempdir); ftempDir.mkdirs(); File tempZip = new File(tempdir + File.separator + zipFile.getName()); tempZip.createNewFile(); FileChannel ic = new FileInputStream(zipFile).getChannel(); FileChannel oc = new FileOutputStream(tempZip).getChannel(); for (long i = 0; i <= ic.size(); i++) { ic.transferTo(0, 1000000, oc); i = i + 999999; } ic.close(); oc.close(); if (zipFile != null && zipFile.getName().toLowerCase().endsWith(".zip")) { ZipFile z = new ZipFile(zipFile); ZipUtil.extract(z, new File(Config.CONTEXT.getRealPath(backupTempFilePath))); } return true; } catch (Exception e) { Logger.error(this, "Error with file", e); return false; } } | 17,340 |
1 | private String md5(String s) { try { MessageDigest digest = java.security.MessageDigest.getInstance("MD5"); digest.update(s.getBytes()); byte messageDigest[] = digest.digest(); StringBuffer hexString = new StringBuffer(); for (int i = 0; i < messageDigest.length; i++) hexString.append(Integer.toHexString(0xFF & messageDigest[i])); return hexString.toString(); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } return ""; } | public boolean checkPassword(String password, String digest) { boolean passwordMatch = false; MessageDigest sha = null; try { sha = MessageDigest.getInstance("SHA-1"); if (digest.regionMatches(true, 0, "{SHA}", 0, 5)) { digest = digest.substring(5); } else if (digest.regionMatches(true, 0, "{SSHA}", 0, 6)) { digest = digest.substring(6); } byte[][] hs = split(Base64.decode(digest.getBytes()), 20); byte[] hash = hs[0]; byte[] salt = hs[1]; sha.reset(); sha.update(password.getBytes()); sha.update(salt); byte[] pwhash = sha.digest(); if (MessageDigest.isEqual(hash, pwhash)) { passwordMatch = true; } } catch (NoSuchAlgorithmException nsae) { CofaxToolsUtil.log("Algorithme SHA-1 non supporte a la verification du password" + nsae + id); } return passwordMatch; } | 17,341 |
0 | public String loadURLString(java.net.URL url) { try { BufferedReader br = new BufferedReader(new InputStreamReader(url.openStream())); StringBuffer buf = new StringBuffer(); String s = ""; while (br.ready() && s != null) { s = br.readLine(); if (s != null) { buf.append(s); buf.append("\n"); } } return buf.toString(); } catch (IOException ex) { return ""; } catch (NullPointerException npe) { return ""; } } | protected void sort(double[] a) throws Exception { for (int i = a.length - 1; i >= 0; i--) { boolean swapped = false; for (int j = 0; j < i; j++) { if (a[j] > a[j + 1]) { double d = a[j]; a[j] = a[j + 1]; a[j + 1] = d; swapped = true; } } if (!swapped) return; } } | 17,342 |
0 | public String getHash(String str) { try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(str.getBytes()); byte[] toChapter1Digest = md.digest(); return Keystore.hexEncode(toChapter1Digest); } catch (Exception e) { logger.error("Error in creating DN hash: " + e.getMessage()); return null; } } | private void _scanForMetaData(URL _url) throws java.io.IOException { if (DEBUG.Enabled) System.out.println(this + " _scanForMetaData: xml props " + mXMLpropertyList); if (DEBUG.Enabled) System.out.println("*** Opening connection to " + _url); markAccessAttempt(); Properties metaData = scrapeHTMLmetaData(_url.openConnection(), 2048); if (DEBUG.Enabled) System.out.println("*** Got meta-data " + metaData); markAccessSuccess(); String title = metaData.getProperty("title"); if (title != null && title.length() > 0) { setProperty("title", title); title = title.replace('\n', ' ').trim(); setTitle(title); } try { setByteSize(Integer.parseInt((String) getProperty("contentLength"))); } catch (Exception e) { } } | 17,343 |
1 | private String doMessageDigestAndBase64Encoding(String sequence) throws SeguidException { if (sequence == null) { throw new NullPointerException("You must give a non null sequence"); } try { MessageDigest messageDigest = MessageDigest.getInstance("SHA"); sequence = sequence.trim().toUpperCase(); messageDigest.update(sequence.getBytes()); byte[] digest = messageDigest.digest(); String seguid = Base64.encodeBytes(digest); seguid = seguid.replace("=", ""); if (log.isTraceEnabled()) { log.trace("SEGUID " + seguid); } return seguid; } catch (NoSuchAlgorithmException e) { throw new SeguidException("Exception thrown when calculating Seguid for " + sequence, e.getCause()); } } | private String createHash() { String hash = ""; try { final java.util.Calendar c = java.util.Calendar.getInstance(); String day = "" + c.get(java.util.Calendar.DATE); day = (day.length() == 1) ? '0' + day : day; String month = "" + (c.get(java.util.Calendar.MONTH) + 1); month = (month.length() == 1) ? '0' + month : month; final String hashString = getStringProperty("hashkey") + day + "." + month + "." + c.get(java.util.Calendar.YEAR); final MessageDigest md = MessageDigest.getInstance("MD5"); md.update(hashString.getBytes()); final byte digest[] = md.digest(); hash = ""; for (int i = 0; i < digest.length; i++) { final String s = Integer.toHexString(digest[i] & 0xFF); hash += ((s.length() == 1) ? "0" + s : s); } } catch (final NoSuchAlgorithmException e) { bot.getLogger().log(e); } return hash; } | 17,344 |
1 | PackageFileImpl(PackageDirectoryImpl dir, String name, InputStream data) throws IOException { this.dir = dir; this.name = name; this.updates = dir.getUpdates(); ByteArrayOutputStream stream = new ByteArrayOutputStream(); IOUtils.copy(data, stream); updates.setNewData(getFullName(), stream.toByteArray()); stream.close(); } | public static void copyFileByNIO(File in, File out) throws IOException { FileChannel sourceChannel = new FileInputStream(in).getChannel(); FileChannel destinationChannel = new FileOutputStream(out).getChannel(); sourceChannel.transferTo(0, sourceChannel.size(), destinationChannel); sourceChannel.close(); destinationChannel.close(); } | 17,345 |
1 | public void doPost(HttpServletRequest req, HttpServletResponse resp) throws IOException, ServletException { Git git = Git.getCurrent(req.getSession()); GitComponentReader gitReader = git.getComponentReader("warpinjector"); String id = req.getParameter("id"); GitElement element = gitReader.getElement(id); String path = (String) element.getAttribute("targetdir"); File folder = new File(path); PrintWriter out = helper.getPrintWriter(resp); MessageBundle messageBundle = new MessageBundle("net.sf.warpcore.cms/servlets/InjectorServletMessages"); Locale locale = req.getLocale(); helper.header(out, messageBundle, locale); if (git.getUser() == null) { helper.notLoggedIn(out, messageBundle, locale); } else { try { MultiPartRequest request = new MultiPartRequest(req); FileInfo info = request.getFileInfo("userfile"); File file = info.getFile(); out.println("tempfile found: " + file.getPath() + "<br>"); String fileName = info.getFileName(); File target = new File(folder, fileName); out.println("copying tempfile to: " + target.getPath() + "<br>"); FileInputStream fis = new FileInputStream(file); FileOutputStream fos = new FileOutputStream(target); byte buf[] = new byte[1024]; int n; while ((n = fis.read(buf)) > 0) fos.write(buf, 0, n); fis.close(); fos.close(); out.println("copy successful - deleting old tempfile<br>"); out.println("deletion result. " + file.delete() + "<p>"); out.println(messageBundle.getMessage("Done. The file {0} has been uploaded", new String[] { "'" + fileName + "'" }, locale)); out.println("<p><a href=\"" + req.getRequestURI() + "?id=" + req.getParameter("id") + "\">" + messageBundle.getMessage("Click here to import another file.", locale) + "</a>"); } catch (Exception ex) { out.println(messageBundle.getMessage("An error occured: {0}", new String[] { ex.getMessage() }, locale)); } } helper.footer(out); } | public void verRecordatorio() { try { cantidadArchivos = obtenerCantidad() + 1; boolean existe = false; String filenametxt = ""; String filenamezip = ""; String hora = ""; String lugar = ""; String actividad = ""; String linea = ""; int dia = 0; int mes = 0; int ano = 0; for (int i = 1; i < cantidadArchivos; i++) { filenamezip = "recordatorio" + i + ".zip"; filenametxt = "recordatorio" + i + ".txt"; BufferedOutputStream dest = null; BufferedInputStream is = null; ZipEntry entry; ZipFile zipfile = new ZipFile(filenamezip); Enumeration e = zipfile.entries(); while (e.hasMoreElements()) { entry = (ZipEntry) e.nextElement(); is = new BufferedInputStream(zipfile.getInputStream(entry)); int count; byte data[] = new byte[buffer]; FileOutputStream fos = new FileOutputStream(entry.getName()); dest = new BufferedOutputStream(fos, buffer); while ((count = is.read(data, 0, buffer)) != -1) dest.write(data, 0, count); dest.flush(); dest.close(); is.close(); } DataInputStream input = new DataInputStream(new FileInputStream(filenametxt)); dia = Integer.parseInt(input.readLine()); mes = Integer.parseInt(input.readLine()); ano = Integer.parseInt(input.readLine()); if (dia == Integer.parseInt(identificarDato(datoSeleccionado))) { existe = true; hora = input.readLine(); lugar = input.readLine(); while ((linea = input.readLine()) != null) actividad += linea + "\n"; verRecordatorioInterfaz(hora, lugar, actividad); hora = ""; lugar = ""; actividad = ""; } input.close(); } if (!existe) JOptionPane.showMessageDialog(null, "No existe un recordatorio guardado\n" + "para el " + identificarDato(datoSeleccionado) + " de " + meses[mesTemporal].toLowerCase() + " del a�o " + anoTemporal, "No existe", JOptionPane.INFORMATION_MESSAGE); table.clearSelection(); } catch (Exception e) { JOptionPane.showMessageDialog(null, "Error en: " + e.toString(), "Error", JOptionPane.ERROR_MESSAGE); } } | 17,346 |
1 | public void create(File target) { if ("dir".equals(type)) { File dir = new File(target, name); dir.mkdirs(); for (Resource c : children) { c.create(dir); } } else if ("package".equals(type)) { String[] dirs = name.split("\\."); File parent = target; for (String d : dirs) { parent = new File(parent, d); } parent.mkdirs(); for (Resource c : children) { c.create(parent); } } else if ("file".equals(type)) { InputStream is = getInputStream(); File file = new File(target, name); try { if (is != null) { FileOutputStream fos = new FileOutputStream(file); IOUtils.copy(is, fos); fos.flush(); fos.close(); } else { PrintStream ps = new PrintStream(file); ps.print(content); ps.flush(); ps.close(); } } catch (FileNotFoundException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } } else if ("zip".equals(type)) { try { unzip(target); } catch (FileNotFoundException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } } else { throw new RuntimeException("unknown resource type: " + type); } } | static void copy(String src, String dest) throws IOException { File ifp = new File(src); File ofp = new File(dest); if (ifp.exists() == false) { throw new IOException("file '" + src + "' does not exist"); } FileInputStream fis = new FileInputStream(ifp); FileOutputStream fos = new FileOutputStream(ofp); byte[] b = new byte[1024]; while (fis.read(b) > 0) fos.write(b); fis.close(); fos.close(); } | 17,347 |
0 | private final String createMD5(String pwd) throws Exception { MessageDigest md = (MessageDigest) MessageDigest.getInstance("MD5").clone(); md.update(pwd.getBytes("UTF-8")); byte[] pd = md.digest(); StringBuffer app = new StringBuffer(); for (int i = 0; i < pd.length; i++) { String s2 = Integer.toHexString(pd[i] & 0xFF); app.append((s2.length() == 1) ? "0" + s2 : s2); } return app.toString(); } | private void unzipResource(final String resourceName, final File targetDirectory) throws IOException { assertTrue(resourceName.startsWith("/")); final URL resource = this.getClass().getResource(resourceName); assertNotNull("Expected '" + resourceName + "' not found.", resource); assertTrue(targetDirectory.isAbsolute()); FileUtils.deleteDirectory(targetDirectory); assertTrue(targetDirectory.mkdirs()); ZipInputStream in = null; boolean suppressExceptionOnClose = true; try { in = new ZipInputStream(resource.openStream()); ZipEntry e; while ((e = in.getNextEntry()) != null) { if (e.isDirectory()) { continue; } final File dest = new File(targetDirectory, e.getName()); assertTrue(dest.isAbsolute()); OutputStream out = null; try { out = FileUtils.openOutputStream(dest); IOUtils.copy(in, out); suppressExceptionOnClose = false; } finally { try { if (out != null) { out.close(); } suppressExceptionOnClose = true; } catch (final IOException ex) { if (!suppressExceptionOnClose) { throw ex; } } } in.closeEntry(); } suppressExceptionOnClose = false; } finally { try { if (in != null) { in.close(); } } catch (final IOException e) { if (!suppressExceptionOnClose) { throw e; } } } } | 17,348 |
1 | public Transaction() throws Exception { Connection Conn = null; Statement Stmt = null; try { Class.forName("org.gjt.mm.mysql.Driver").newInstance(); Conn = DriverManager.getConnection(DBUrl); Conn.setAutoCommit(true); Stmt = Conn.createStatement(); try { Stmt.executeUpdate("DROP TABLE trans_test"); } catch (SQLException sqlEx) { } Stmt.executeUpdate("CREATE TABLE trans_test (id int not null primary key, decdata double) type=BDB"); Conn.setAutoCommit(false); Stmt.executeUpdate("INSERT INTO trans_test (id, decdata) VALUES (1, 21.0)"); Stmt.executeUpdate("INSERT INTO trans_test (id, decdata) VALUES (2, 23.485115)"); Conn.rollback(); System.out.println("Roll Ok"); ResultSet RS = Stmt.executeQuery("SELECT * from trans_test"); if (!RS.next()) { System.out.println("Ok"); } else { System.out.println("Rollback failed"); } Stmt.executeUpdate("INSERT INTO trans_test (id, decdata) VALUES (2, 23.485115)"); Stmt.executeUpdate("INSERT INTO trans_test (id, decdata) VALUES (1, 21.485115)"); Conn.commit(); RS = Stmt.executeQuery("SELECT * from trans_test where id=2"); if (RS.next()) { System.out.println(RS.getDouble(2)); System.out.println("Ok"); } else { System.out.println("Rollback failed"); } } catch (Exception ex) { throw ex; } finally { if (Stmt != null) { try { Stmt.close(); } catch (SQLException SQLEx) { } } if (Conn != null) { try { Conn.close(); } catch (SQLException SQLEx) { } } } } | public void modifyDecisionInstruction(int id, int condition, String frameSlot, String linkName, int objectId, String attribute, int positive, int negative) throws FidoDatabaseException, ObjectNotFoundException, InstructionNotFoundException { try { Connection conn = null; Statement stmt = null; try { if ((condition == ConditionalOperatorTable.CONTAINS_LINK) || (condition == ConditionalOperatorTable.NOT_CONTAINS_LINK)) { ObjectTable ot = new ObjectTable(); if (ot.contains(objectId) == false) throw new ObjectNotFoundException(objectId); } conn = fido.util.FidoDataSource.getConnection(); conn.setAutoCommit(false); stmt = conn.createStatement(); if (contains(stmt, positive) == false) throw new InstructionNotFoundException(positive); if (contains(stmt, negative) == false) throw new InstructionNotFoundException(negative); String sql = "update Instructions set Operator = " + condition + ", " + " FrameSlot = '" + frameSlot + "', " + " LinkName = '" + linkName + "', " + " ObjectId = " + objectId + ", " + " AttributeName = '" + attribute + "' " + "where InstructionId = " + id; stmt.executeUpdate(sql); InstructionGroupTable groupTable = new InstructionGroupTable(); groupTable.deleteInstruction(stmt, id); if (positive != -1) groupTable.addInstructionAt(stmt, id, 1, positive); if (negative != -1) groupTable.addInstructionAt(stmt, id, 2, negative); conn.commit(); } catch (SQLException e) { if (conn != null) conn.rollback(); throw e; } finally { if (stmt != null) stmt.close(); if (conn != null) conn.close(); } } catch (SQLException e) { throw new FidoDatabaseException(e); } } | 17,349 |
0 | public void addButtons() { BufferedImage bufImage = null; BufferedImage bufImage1 = null; for (int i = 0; i < urls.size(); i++) { String url = (String) urls.elementAt(i); if (url.contains(java.util.ResourceBundle.getBundle("com/jjcp/resources/Strings").getString("IHERETRIEVEDOCUMENT"))) { return; } try { URL url1 = new URL(url); URLConnection conn = null; conn = url1.openConnection(); InputStream in = conn.getInputStream(); in.close(); bufImage = ImageIO.read(url1); bufImage1 = resizeAnImage(bufImage, 0.25); ImageIcon icon = new ImageIcon(bufImage1); ImageButton imageButton = new ImageButton(icon, this, i); imageButton.setIndex(i); jPanel1.add(imageButton); jPanel1.setPreferredSize(new Dimension(imageButton.getWidth() * urls.size(), imageButton.getHeight() + 20)); } catch (Exception exception) { exception.printStackTrace(); } } this.setVisible(true); this.repaint(); } | protected PTask commit_result(Result r, SyrupConnection con) throws Exception { try { int logAction = LogEntry.ENDED; String kk = r.context().task().key(); if (r.in_1_consumed() && r.context().in_1_link() != null) { sqlImpl().updateFunctions().updateInLink(kk, false, null, con); logAction = logAction | LogEntry.IN_1; } if (r.in_2_consumed() && r.context().in_2_link() != null) { sqlImpl().updateFunctions().updateInLink(kk, true, null, con); logAction = logAction | LogEntry.IN_2; } if (r.out_1_result() != null && r.context().out_1_link() != null) { sqlImpl().updateFunctions().updateOutLink(kk, false, r.out_1_result(), con); logAction = logAction | LogEntry.OUT_1; } if (r.out_2_result() != null && r.context().out_2_link() != null) { sqlImpl().updateFunctions().updateOutLink(kk, true, r.out_2_result(), con); logAction = logAction | LogEntry.OUT_2; } sqlImpl().loggingFunctions().log(r.context().task().key(), logAction, con); boolean isParent = r.context().task().isParent(); if (r instanceof Workflow) { Workflow w = (Workflow) r; Task[] tt = w.tasks(); Link[] ll = w.links(); Hashtable tkeyMap = new Hashtable(); for (int i = 0; i < tt.length; i++) { String key = sqlImpl().creationFunctions().newTask(tt[i], r.context().task(), con); tkeyMap.put(tt[i], key); } for (int j = 0; j < ll.length; j++) { sqlImpl().creationFunctions().newLink(ll[j], tkeyMap, con); } String in_link_1 = sqlImpl().queryFunctions().readInTask(kk, false, con); String in_link_2 = sqlImpl().queryFunctions().readInTask(kk, true, con); String out_link_1 = sqlImpl().queryFunctions().readOutTask(kk, false, con); String out_link_2 = sqlImpl().queryFunctions().readOutTask(kk, true, con); sqlImpl().updateFunctions().rewireInLink(kk, false, w.in_1_binding(), tkeyMap, con); sqlImpl().updateFunctions().rewireInLink(kk, true, w.in_2_binding(), tkeyMap, con); sqlImpl().updateFunctions().rewireOutLink(kk, false, w.out_1_binding(), tkeyMap, con); sqlImpl().updateFunctions().rewireOutLink(kk, true, w.out_2_binding(), tkeyMap, con); for (int k = 0; k < tt.length; k++) { String kkey = (String) tkeyMap.get(tt[k]); sqlImpl().updateFunctions().checkAndUpdateDone(kkey, con); } sqlImpl().updateFunctions().checkAndUpdateDone(in_link_1, con); sqlImpl().updateFunctions().checkAndUpdateDone(in_link_2, con); sqlImpl().updateFunctions().checkAndUpdateDone(out_link_1, con); sqlImpl().updateFunctions().checkAndUpdateDone(out_link_2, con); for (int k = 0; k < tt.length; k++) { String kkey = (String) tkeyMap.get(tt[k]); sqlImpl().updateFunctions().checkAndUpdateTargetExecutable(kkey, con); } sqlImpl().updateFunctions().checkAndUpdateTargetExecutable(in_link_1, con); sqlImpl().updateFunctions().checkAndUpdateTargetExecutable(in_link_2, con); sqlImpl().updateFunctions().checkAndUpdateTargetExecutable(out_link_1, con); sqlImpl().updateFunctions().checkAndUpdateTargetExecutable(out_link_2, con); isParent = true; } sqlImpl().updateFunctions().checkAndUpdateDone(kk, con); sqlImpl().updateFunctions().checkAndUpdateTargetExecutable(kk, con); PreparedStatement s3 = null; s3 = con.prepareStatementFromCache(sqlImpl().sqlStatements().updateTaskModificationStatement()); java.util.Date dd = new java.util.Date(); s3.setLong(1, dd.getTime()); s3.setBoolean(2, isParent); s3.setString(3, r.context().task().key()); s3.executeUpdate(); sqlImpl().loggingFunctions().log(kk, LogEntry.ENDED, con); con.commit(); return sqlImpl().queryFunctions().readPTask(kk, con); } finally { con.rollback(); } } | 17,350 |
0 | public void authenticate(final ConnectionHandler ch, final AuthenticationCriteria ac) throws NamingException { byte[] hash = new byte[DIGEST_SIZE]; try { final MessageDigest md = MessageDigest.getInstance(this.passwordScheme); md.update(((String) ac.getCredential()).getBytes()); hash = md.digest(); } catch (NoSuchAlgorithmException e) { throw new NamingException(e.getMessage()); } ch.connect(this.config.getBindDn(), this.config.getBindCredential()); NamingEnumeration<SearchResult> en = null; try { en = ch.getLdapContext().search(ac.getDn(), "userPassword={0}", new Object[] { String.format("{%s}%s", this.passwordScheme, LdapUtil.base64Encode(hash)).getBytes() }, LdapConfig.getCompareSearchControls()); if (!en.hasMore()) { throw new AuthenticationException("Compare authentication failed."); } } finally { if (en != null) { en.close(); } } } | private static void insertFiles(Connection con, File file) throws IOException { BufferedReader bf = new BufferedReader(new FileReader(file)); String line = bf.readLine(); while (line != null) { if (!line.startsWith(" ") && !line.startsWith("#")) { try { System.out.println("Exec: " + line); PreparedStatement prep = con.prepareStatement(line); prep.executeUpdate(); prep.close(); con.commit(); } catch (Exception e) { e.printStackTrace(); try { con.rollback(); } catch (SQLException e1) { e1.printStackTrace(); } } } line = bf.readLine(); } bf.close(); } | 17,351 |
1 | private void copia(FileInputStream input, FileOutputStream output) throws ErrorException { if (input == null || output == null) { throw new ErrorException("Param null"); } FileChannel inChannel = input.getChannel(); FileChannel outChannel = output.getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); inChannel.close(); outChannel.close(); } catch (IOException e) { throw new ErrorException("Casino nella copia del file"); } } | private BinaryDocument documentFor(String code, String type, int diagramIndex) { code = code.replaceAll("\n", "").replaceAll("\t", "").trim().replaceAll(" ", "%20"); StringBuilder builder = new StringBuilder("http://yuml.me/diagram/"); builder.append(type).append("/"); builder.append(code); URL url; try { url = new URL(builder.toString()); String name = "uml" + diagramIndex + ".png"; diagramIndex++; BinaryDocument pic = new BinaryDocument(name, "image/png"); IOUtils.copy(url.openStream(), pic.getContent().getOutputStream()); return pic; } catch (MalformedURLException e) { throw ManagedIOException.manage(e); } catch (IOException e) { throw ManagedIOException.manage(e); } } | 17,352 |
1 | public String stringOfUrl(String addr) throws IOException { ByteArrayOutputStream output = new ByteArrayOutputStream(); URL url = new URL(addr); IOUtils.copy(url.openStream(), output); return output.toString(); } | @Test @Ignore public void testToJson() throws IOException { JsonSerializer js = new StreamingJsonSerializer(new ObjectMapper()); BulkOperation op = js.createBulkOperation(createTestData(10000), false); IOUtils.copy(op.getData(), System.out); } | 17,353 |
1 | private void displayDiffResults() throws IOException { File outFile = File.createTempFile("diff", ".htm"); outFile.deleteOnExit(); FileOutputStream outStream = new FileOutputStream(outFile); BufferedWriter out = new BufferedWriter(new OutputStreamWriter(outStream)); out.write("<html><head><title>LOC Differences</title>\n" + SCRIPT + "</head>\n" + "<body bgcolor='#ffffff'>\n" + "<div onMouseOver=\"window.defaultStatus='Metrics'\">\n"); if (addedTable.length() > 0) { out.write("<table border><tr><th>Files Added:</th>" + "<th>Add</th><th>Type</th></tr>"); out.write(addedTable.toString()); out.write("</table><br><br>"); } if (modifiedTable.length() > 0) { out.write("<table border><tr><th>Files Modified:</th>" + "<th>Base</th><th>Del</th><th>Mod</th><th>Add</th>" + "<th>Total</th><th>Type</th></tr>"); out.write(modifiedTable.toString()); out.write("</table><br><br>"); } if (deletedTable.length() > 0) { out.write("<table border><tr><th>Files Deleted:</th>" + "<th>Del</th><th>Type</th></tr>"); out.write(deletedTable.toString()); out.write("</table><br><br>"); } out.write("<table name=METRICS BORDER>\n"); if (modifiedTable.length() > 0 || deletedTable.length() > 0) { out.write("<tr><td>Base: </td><td>"); out.write(Long.toString(base)); out.write("</td></tr>\n<tr><td>Deleted: </td><td>"); out.write(Long.toString(deleted)); out.write("</td></tr>\n<tr><td>Modified: </td><td>"); out.write(Long.toString(modified)); out.write("</td></tr>\n<tr><td>Added: </td><td>"); out.write(Long.toString(added)); out.write("</td></tr>\n<tr><td>New & Changed: </td><td>"); out.write(Long.toString(added + modified)); out.write("</td></tr>\n"); } out.write("<tr><td>Total: </td><td>"); out.write(Long.toString(total)); out.write("</td></tr>\n</table></div>"); redlinesOut.close(); out.flush(); InputStream redlines = new FileInputStream(redlinesTempFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = redlines.read(buffer)) != -1) outStream.write(buffer, 0, bytesRead); outStream.write("</BODY></HTML>".getBytes()); outStream.close(); Browser.launch(outFile.toURL().toString()); } | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 17,354 |
1 | public void salva(UploadedFile imagem, Usuario usuario) { File destino = new File(pastaImagens, usuario.getId() + ".imagem"); try { IOUtils.copyLarge(imagem.getFile(), new FileOutputStream(destino)); } catch (IOException e) { throw new RuntimeException("Erro ao copiar imagem", e); } } | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | 17,355 |
0 | public String postFileRequest(String fileName, String internalFileName) throws Exception { status = STATUS_INIT; String responseString = null; String requestStringPostFix = new String(""); if (isThreadStopped) { return ""; } status = STATUS_UPLOADING; if (isThreadStopped) { return ""; } String requestString = new String(""); int contentLength = 0, c = 0, counter = 0; try { for (java.util.Iterator i = parameters.entrySet().iterator(); i.hasNext(); ) { java.util.Map.Entry e = (java.util.Map.Entry) i.next(); requestString = requestString + "-----------------------------7d338a374003ea\n" + "Content-Disposition: form-data; name=\"" + (String) e.getKey() + "\"\n\n" + (String) e.getValue() + "\n\n"; } URL url = new URL(urlString); URLConnection connection = url.openConnection(); HttpURLConnection httpConn = (HttpURLConnection) connection; requestString = requestString + "-----------------------------7d338a374003ea\n" + "Content-Disposition: form-data; name=\"" + internalFileName + "\"; filename=\"" + fileName + "\"\n" + "Content-Type: text/plain\n\n"; requestStringPostFix = requestStringPostFix + "\n\n" + "-----------------------------7d338a374003ea\n" + "\n"; FileInputStream fis = null; String str = null; try { fis = new FileInputStream(fileName); int fileSize = fis.available(); contentLength = requestString.length() + requestStringPostFix.length() + fileSize; httpConn.setRequestProperty("Content-Length", String.valueOf(contentLength)); httpConn.setRequestProperty("Content-Type", "multipart/form-data; boundary=---------------------------7d338a374003ea"); httpConn.setRequestMethod("POST"); httpConn.setDoOutput(true); httpConn.setDoInput(true); try { connection.connect(); } catch (ConnectException ec2) { error = true; finished = true; errorStr = "Cannot connect to: " + urlString; System.out.println("Cannot connect to:" + urlString); } catch (java.io.InterruptedIOException e) { error = true; finished = true; errorStr = "Connection to Portal lost: communication is timeouted."; parentWorkflow.getMenuButtonEventHandler().stopAutomaticRefresh(); } catch (IllegalStateException ei) { error = true; finished = true; errorStr = "IllegalStateException: " + ei.getMessage(); } OutputStream out = httpConn.getOutputStream(); byte[] toTransfer = requestString.getBytes("UTF-8"); for (int i = 0; i < toTransfer.length; i++) { out.write(toTransfer[i]); } int count; int zBUFFER = 8 * 1024; setUploadProgress(fileSize, counter); byte data[] = new byte[zBUFFER]; GZIPOutputStream zos = new GZIPOutputStream(out); while ((count = fis.read(data, 0, zBUFFER)) != -1) { if (isThreadStopped) { return ""; } zos.write(data, 0, count); setUploadProgress(fileSize, counter); counter += count; } zos.flush(); zos.finish(); setUploadProgress(fileSize, counter); toTransfer = requestStringPostFix.getBytes("UTF-8"); for (int i = 0; i < toTransfer.length; i++) { out.write(toTransfer[i]); } out.close(); } catch (IOException e) { finished = true; error = true; errorStr = "Error in Uploading file: " + fileName; } finally { try { fis.close(); } catch (IOException e2) { } } InputStreamReader isr = new InputStreamReader(httpConn.getInputStream()); BufferedReader br = new BufferedReader(isr); String temp; String tempResponse = ""; while ((temp = br.readLine()) != null) { if (isThreadStopped) { return ""; } tempResponse = tempResponse + temp + "\n"; setDecompressStatusAtUpload(temp); } responseString = tempResponse; isr.close(); } catch (ConnectException ec) { error = true; finished = true; errorStr = "Cannot connect to: " + urlString + "\nServer is not responding."; } catch (java.io.InterruptedIOException e) { error = true; finished = true; errorStr = "Connection to Portal lost: communication is timeouted."; parentWorkflow.getMenuButtonEventHandler().stopAutomaticRefresh(); } catch (IOException e2) { finished = true; error = true; errorStr = "IOError in postFileRequest: " + e2.getMessage(); } catch (Exception e4) { finished = true; error = true; errorStr = "Error while trying to communicate the server: " + e4.getMessage(); } return responseString; } | protected boolean check(String username, String password, String realm, String nonce, String nc, String cnonce, String qop, String uri, String response, HttpServletRequest request) { try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(username.getBytes()); md.update((byte) ':'); md.update(realm.getBytes()); md.update((byte) ':'); md.update(password.getBytes()); byte[] ha1 = md.digest(); md.reset(); md.update(request.getMethod().getBytes()); md.update((byte) ':'); md.update(uri.getBytes()); byte[] ha2 = md.digest(); md.update(TypeUtil.toString(ha1, 16).getBytes()); md.update((byte) ':'); md.update(nonce.getBytes()); md.update((byte) ':'); md.update(nc.getBytes()); md.update((byte) ':'); md.update(cnonce.getBytes()); md.update((byte) ':'); md.update(qop.getBytes()); md.update((byte) ':'); md.update(TypeUtil.toString(ha2, 16).getBytes()); byte[] digest = md.digest(); return response.equals(encode(digest)); } catch (Exception e) { e.printStackTrace(); return false; } } | 17,356 |
1 | private void copyPhoto(final IPhoto photo, final Map.Entry<String, Integer> size) { final File fileIn = new File(storageService.getPhotoPath(photo, storageService.getOriginalDir())); final File fileOut = new File(storageService.getPhotoPath(photo, size.getKey())); InputStream fileInputStream; OutputStream fileOutputStream; try { fileInputStream = new FileInputStream(fileIn); fileOutputStream = new FileOutputStream(fileOut); IOUtils.copy(fileInputStream, fileOutputStream); fileInputStream.close(); fileOutputStream.close(); } catch (final IOException e) { log.error("file io exception", e); return; } } | public static void copyFile(File sourceFile, File destFile) throws IOException { FileChannel source = null; FileChannel destination = null; try { source = new FileInputStream(sourceFile).getChannel(); destination = new FileOutputStream(destFile).getChannel(); destination.transferFrom(source, 0, source.size()); } finally { if (source != null) { source.close(); } if (destination != null) { destination.close(); } } } | 17,357 |
1 | private static void copy(File source, File dest) throws FileNotFoundException, IOException { FileInputStream input = new FileInputStream(source); FileOutputStream output = new FileOutputStream(dest); System.out.println("Copying " + source + " to " + dest); IOUtils.copy(input, output); output.close(); input.close(); dest.setLastModified(source.lastModified()); } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 17,358 |
1 | public static void executa(String arquivo, String filial, String ip) { String drive = arquivo.substring(0, 2); if (drive.indexOf(":") == -1) drive = ""; Properties p = Util.lerPropriedades(arquivo); String servidor = p.getProperty("servidor"); String impressora = p.getProperty("fila"); String arqRel = new String(drive + p.getProperty("arquivo")); String copias = p.getProperty("copias"); if (filial.equalsIgnoreCase(servidor)) { Socket s = null; int tentativas = 0; boolean conectado = false; while (!conectado) { try { tentativas++; System.out.println("Tentando conectar " + ip + " (" + tentativas + ")"); s = new Socket(ip, 7000); conectado = s.isConnected(); } catch (ConnectException ce) { System.err.println(ce.getMessage()); System.err.println(ce.getCause()); } catch (UnknownHostException uhe) { System.err.println(uhe.getMessage()); } catch (IOException ioe) { System.err.println(ioe.getMessage()); } } FileInputStream in = null; BufferedOutputStream out = null; try { in = new FileInputStream(new File(arqRel)); out = new BufferedOutputStream(new GZIPOutputStream(s.getOutputStream())); } catch (FileNotFoundException e3) { e3.printStackTrace(); } catch (IOException e3) { e3.printStackTrace(); } String arqtr = arqRel.substring(2); System.out.println("Proximo arquivo: " + arqRel + " ->" + arqtr); while (arqtr.length() < 30) arqtr += " "; while (impressora.length() < 30) impressora += " "; byte aux[] = new byte[30]; byte cop[] = new byte[2]; try { aux = arqtr.getBytes("UTF8"); out.write(aux); aux = impressora.getBytes("UTF8"); out.write(aux); cop = copias.getBytes("UTF8"); out.write(cop); out.flush(); } catch (UnsupportedEncodingException e2) { e2.printStackTrace(); } catch (IOException e2) { e2.printStackTrace(); } byte b[] = new byte[1024]; int nBytes; try { while ((nBytes = in.read(b)) != -1) out.write(b, 0, nBytes); out.flush(); out.close(); in.close(); s.close(); } catch (IOException e1) { e1.printStackTrace(); } System.out.println("Arquivo " + arqRel + " foi transmitido. \n\n"); try { Thread.sleep(1000); } catch (InterruptedException e) { e.printStackTrace(); } SimpleDateFormat dfArq = new SimpleDateFormat("yyyy-MM-dd"); SimpleDateFormat dfLog = new SimpleDateFormat("yyyy-MM-dd HH:mm:ss"); String arqLog = "log" + filial + dfArq.format(new Date()) + ".txt"; PrintWriter pw = null; try { pw = new PrintWriter(new FileWriter(arqLog, true)); } catch (IOException e) { e.printStackTrace(); } pw.println("Arquivo: " + arquivo + " " + dfLog.format(new Date())); pw.flush(); pw.close(); File f = new File(arquivo); while (!f.delete()) { System.out.println("Erro apagando " + arquivo); } } } | public void run() { FileInputStream src; FileOutputStream dest; try { src = new FileInputStream(srcName); dest = new FileOutputStream(destName); } catch (FileNotFoundException e) { e.printStackTrace(); return; } FileChannel srcC = src.getChannel(); FileChannel destC = dest.getChannel(); ByteBuffer buf = ByteBuffer.allocate(BUFFER_SIZE); try { int i; System.out.println(srcC.size()); while ((i = srcC.read(buf)) > 0) { System.out.println(buf.getChar(2)); buf.flip(); destC.write(buf); buf.compact(); } destC.close(); dest.close(); } catch (IOException e1) { e1.printStackTrace(); return; } } | 17,359 |
1 | public void updatePortletName(PortletName portletNameBean) { DatabaseAdapter dbDyn = null; PreparedStatement ps = null; try { dbDyn = DatabaseAdapter.getInstance(); String sql = "update WM_PORTAL_PORTLET_NAME " + "set TYPE=? " + "where ID_SITE_CTX_TYPE=?"; ps = dbDyn.prepareStatement(sql); ps.setString(1, portletNameBean.getPortletName()); RsetTools.setLong(ps, 2, portletNameBean.getPortletId()); int i1 = ps.executeUpdate(); if (log.isDebugEnabled()) log.debug("Count of updated record - " + i1); dbDyn.commit(); } catch (Exception e) { try { if (dbDyn != null) dbDyn.rollback(); } catch (Exception e001) { } String es = "Error save portlet name"; log.error(es, e); throw new IllegalStateException(es, e); } finally { DatabaseManager.close(dbDyn, ps); dbDyn = null; ps = null; } } | private void saveMessage(String server, Message message, byte[] bytes) throws Exception { ConnectionProvider cp = null; Connection conn = null; PreparedStatement ps = null; try { SessionFactoryImplementor impl = (SessionFactoryImplementor) getPortalDao().getSessionFactory(); cp = impl.getConnectionProvider(); conn = cp.getConnection(); conn.setAutoCommit(false); long orgId = 0; String className = ""; long classId = 0; if (message.getBody() instanceof Entity) { Entity entity = (Entity) message.getBody(); orgId = entity.getOrgId(); className = entity.getClass().getName(); classId = entity.getId(); } ps = conn.prepareStatement("insert into light_replication_message (orgId,server,event,className,classId,message,createDate) values(?,?,?,?,?,?,?);"); ps.setLong(1, orgId); ps.setString(2, server); ps.setString(3, message.getEvent().toString()); ps.setString(4, className); ps.setLong(5, classId); ps.setBytes(6, bytes); ps.setTimestamp(7, new Timestamp(System.currentTimeMillis())); ps.executeUpdate(); conn.commit(); ps.close(); conn.close(); } catch (Exception e) { conn.rollback(); ps.close(); conn.close(); e.printStackTrace(); throw new Exception(e); } } | 17,360 |
0 | private Face(String font) throws IOException { characterWidths = new double[256]; StringBuffer sb = new StringBuffer(); sb.append('/'); sb.append(Constants.FONTS_DIR); sb.append('/'); sb.append(font); sb.append(Constants.CHAR_WIDTHS_SUFFIX); String path = sb.toString(); URL url = getClass().getResource(path); InputStream is = url.openStream(); BufferedReader br = new BufferedReader(new InputStreamReader(is)); int pos = 0; String width = br.readLine(); while (width != null && pos < 256) { characterWidths[pos] = Double.parseDouble(width); pos++; width = br.readLine(); } } | public static byte[] createAuthenticator(ByteBuffer data, String secret) { assert data.isDirect() == false : "must not a direct ByteBuffer"; int pos = data.position(); if (pos < RadiusPacket.MIN_PACKET_LENGTH) { System.err.println("packet too small"); return null; } try { MessageDigest md5 = MessageDigest.getInstance("MD5"); byte[] arr = data.array(); md5.reset(); md5.update(arr, 0, pos); md5.update(secret.getBytes()); return md5.digest(); } catch (NoSuchAlgorithmException nsaex) { throw new RuntimeException("Could not access MD5 algorithm, fatal error"); } } | 17,361 |
1 | public static String getSHA1Digest(String inputStr) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md = null; byte[] sha1hash = null; md = MessageDigest.getInstance("SHA"); sha1hash = new byte[40]; md.update(inputStr.getBytes("iso-8859-1"), 0, inputStr.length()); sha1hash = md.digest(); return convertToHex(sha1hash); } | private String hash(String message) { MessageDigest md = null; try { md = MessageDigest.getInstance("SHA1"); } catch (NoSuchAlgorithmException e) { throw new AssertionError("Can't find the SHA1 algorithm in the java.security package"); } String saltString = String.valueOf(12345); md.update(saltString.getBytes()); md.update(message.getBytes()); byte[] digestBytes = md.digest(); StringBuffer digestSB = new StringBuffer(); for (int i = 0; i < digestBytes.length; i++) { int lowNibble = digestBytes[i] & 0x0f; int highNibble = (digestBytes[i] >> 4) & 0x0f; digestSB.append(Integer.toHexString(highNibble)); digestSB.append(Integer.toHexString(lowNibble)); } String digestStr = digestSB.toString().trim(); return digestStr; } | 17,362 |
0 | private int getPage(StringBuffer ret) throws IOException { Properties sysProp; int ResponseCode = HttpURLConnection.HTTP_OK; BufferedReader br = null; try { URLConnection con = url.openConnection(); con.setDefaultUseCaches(false); con.setDoInput(true); con.setDoOutput(false); if (con instanceof HttpURLConnection) { HttpURLConnection httpcon = (HttpURLConnection) con; ResponseCode = httpcon.getResponseCode(); if (ResponseCode != httpcon.HTTP_OK) { httpcon.disconnect(); return (ResponseCode); } br = new BufferedReader(new InputStreamReader(con.getInputStream())); String line; int NumberOfLines = 0; while ((line = br.readLine()) != null) { ret.append(line + "\n"); ++NumberOfLines; } httpcon.disconnect(); } else { br = new BufferedReader(new InputStreamReader(con.getInputStream())); String line; while ((line = br.readLine()) != null) { ret.append(line + "\n"); } } } catch (IOException e) { } finally { if (br != null) br.close(); } return ResponseCode; } | public void testReleaseOnIOException() throws Exception { localServer.register("/dropdead", new HttpRequestHandler() { public void handle(final HttpRequest request, final HttpResponse response, final HttpContext context) throws HttpException, IOException { BasicHttpEntity entity = new BasicHttpEntity() { @Override public void writeTo(final OutputStream outstream) throws IOException { byte[] tmp = new byte[5]; outstream.write(tmp); outstream.flush(); DefaultHttpServerConnection conn = (DefaultHttpServerConnection) context.getAttribute(ExecutionContext.HTTP_CONNECTION); try { conn.sendResponseHeader(response); } catch (HttpException ignore) { } } }; entity.setChunked(true); response.setEntity(entity); } }); HttpParams params = defaultParams.copy(); ConnManagerParams.setMaxTotalConnections(params, 1); ConnManagerParams.setMaxConnectionsPerRoute(params, new ConnPerRouteBean(1)); ThreadSafeClientConnManager mgr = createTSCCM(params, null); assertEquals(0, mgr.getConnectionsInPool()); DefaultHttpClient client = new DefaultHttpClient(mgr, params); HttpGet httpget = new HttpGet("/dropdead"); HttpHost target = getServerHttp(); HttpResponse response = client.execute(target, httpget); ClientConnectionRequest connreq = mgr.requestConnection(new HttpRoute(target), null); try { connreq.getConnection(250, TimeUnit.MILLISECONDS); fail("ConnectionPoolTimeoutException should have been thrown"); } catch (ConnectionPoolTimeoutException expected) { } HttpEntity e = response.getEntity(); assertNotNull(e); try { EntityUtils.toByteArray(e); fail("MalformedChunkCodingException should have been thrown"); } catch (MalformedChunkCodingException expected) { } assertEquals(0, mgr.getConnectionsInPool()); connreq = mgr.requestConnection(new HttpRoute(target), null); ManagedClientConnection conn = connreq.getConnection(250, TimeUnit.MILLISECONDS); mgr.releaseConnection(conn, -1, null); mgr.shutdown(); } | 17,363 |
1 | private String createCSVFile(String fileName) throws FileNotFoundException, IOException { String csvFile = fileName + ".csv"; BufferedReader buf = new BufferedReader(new FileReader(fileName)); BufferedWriter out = new BufferedWriter(new FileWriter(csvFile)); String line; while ((line = buf.readLine()) != null) out.write(line + "\n"); buf.close(); out.close(); return csvFile; } | public void exportFile() { String expfolder = PropertyHandler.getInstance().getProperty(PropertyHandler.KINDLE_EXPORT_FOLDER_KEY); File out = new File(expfolder + File.separator + previewInfo.getTitle() + ".prc"); File f = new File(absPath); try { FileOutputStream fout = new FileOutputStream(out); FileInputStream fin = new FileInputStream(f); int read = 0; byte[] buffer = new byte[1024 * 1024]; while ((read = fin.read(buffer)) > 0) { fout.write(buffer, 0, read); } fin.close(); fout.close(); } catch (FileNotFoundException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } } | 17,364 |
0 | public boolean checkTypeChange(Class<?> clazz, File buildDir, File refFile) throws MojoExecutionException { if (!clazz.isPrimitive()) { ClassLoader cl = clazz.getClassLoader(); if (cl == loader) { if (clazz.isArray()) return checkTypeChange(getArrayType(clazz), buildDir, refFile); String path = clazz.getName().replace('.', File.separatorChar) + ".class"; File file = new File(buildDir, path); long lastMod = Long.MAX_VALUE; if (!file.exists()) { URL url = cl.getResource(path); if (url == null) throw new MojoExecutionException("Can't get URL for webservice class '" + clazz.getName() + "' from jar file."); else { try { JarURLConnection con = (JarURLConnection) url.openConnection(); lastMod = con.getJarEntry().getTime(); } catch (IOException x) { throw new MojoExecutionException("Can't get modification time for webservice class '" + clazz.getName() + "' from jar file."); } } } else { lastMod = file.lastModified(); } if (refFile.lastModified() < lastMod) return true; if (clazz.isInterface()) { Class<?>[] itfs = clazz.getInterfaces(); for (int i = 0; i < itfs.length; i++) { boolean changed = checkTypeChange(itfs[i], buildDir, refFile); if (changed) return true; } } else { Class<?> sup = clazz.getSuperclass(); boolean changed = checkTypeChange(sup, buildDir, refFile); if (changed) return true; } } } return false; } | public static void sendPostRequest() { String data = "text=Eschirichia coli"; try { URL url = new URL("http://taxonfinder.ubio.org/analyze?"); URLConnection conn = url.openConnection(); conn.setDoOutput(true); OutputStreamWriter writer = new OutputStreamWriter(conn.getOutputStream()); writer.write(data); writer.flush(); StringBuffer answer = new StringBuffer(); BufferedReader reader = new BufferedReader(new InputStreamReader(conn.getInputStream())); String line; while ((line = reader.readLine()) != null) { answer.append(line); } writer.close(); reader.close(); System.out.println(answer.toString()); } catch (MalformedURLException ex) { ex.printStackTrace(); } catch (IOException ex) { ex.printStackTrace(); } } | 17,365 |
1 | private static void copyFile(File sourceFile, File destFile) throws IOException { System.out.println(sourceFile.getAbsolutePath()); System.out.println(destFile.getAbsolutePath()); FileChannel source = new FileInputStream(sourceFile).getChannel(); try { FileChannel destination = new FileOutputStream(destFile).getChannel(); try { destination.transferFrom(source, 0, source.size()); } finally { if (destination != null) { destination.close(); } } } finally { source.close(); } } | protected static String stringOfUrl(String addr) throws IOException { ByteArrayOutputStream output = new ByteArrayOutputStream(); URL url = new URL(addr); URLConnection c = url.openConnection(); c.setConnectTimeout(2000); IOUtils.copy(c.getInputStream(), output); return output.toString(); } | 17,366 |
0 | @Override protected Drawing construct() throws IOException { Drawing result; System.out.println("getParameter.datafile:" + getParameter("datafile")); if (getParameter("data") != null) { NanoXMLDOMInput domi = new NanoXMLDOMInput(new NetFactory(), new StringReader(getParameter("data"))); result = (Drawing) domi.readObject(0); } else if (getParameter("datafile") != null) { URL url = new URL(getDocumentBase(), getParameter("datafile")); InputStream in = url.openConnection().getInputStream(); try { NanoXMLDOMInput domi = new NanoXMLDOMInput(new NetFactory(), in); result = (Drawing) domi.readObject(0); } finally { in.close(); } } else { result = null; } return result; } | public static boolean copyFile(final File src, final File dst) throws FileNotFoundException { if (src == null || dst == null || src.equals(dst)) { return false; } boolean result = false; if (src.exists()) { if (dst.exists() && !dst.canWrite()) { return false; } final FileInputStream srcStream = new FileInputStream(src); final FileOutputStream dstStream = new FileOutputStream(dst); final FileChannel srcChannel = srcStream.getChannel(); final FileChannel dstChannel = dstStream.getChannel(); FileLock dstLock = null; FileLock srcLock = null; try { srcLock = srcChannel.tryLock(0, Long.MAX_VALUE, true); dstLock = dstChannel.tryLock(); if (srcLock != null && dstLock != null) { int maxCount = 64 * 1024 * 1024 - 32 * 1024; long size = srcChannel.size(); long position = 0; while (position < size) { position += srcChannel.transferTo(position, maxCount, dstChannel); } } } catch (IOException ex) { Logger.getLogger(FileUtils.class.getName()).log(Level.SEVERE, null, ex); } finally { if (srcChannel != null) { try { if (srcLock != null) { srcLock.release(); } srcChannel.close(); srcStream.close(); } catch (IOException ex) { Logger.getLogger(FileUtils.class.getName()).log(Level.SEVERE, null, ex); } } if (dstChannel != null) { try { if (dstLock != null) { dstLock.release(); } dstChannel.close(); dstStream.close(); result = true; } catch (IOException ex) { Logger.getLogger(FileUtils.class.getName()).log(Level.SEVERE, null, ex); } } } } return result; } | 17,367 |
1 | private boolean importTablesData(Connection conn) { try { boolean status = true; boolean autoCommit = conn.getAutoCommit(); conn.setAutoCommit(false); String dbType = this.getFromSession("database"); List statements = ParseDBDumpFile.parse(SystemGlobals.getValue(ConfigKeys.CONFIG_DIR) + "/database/" + dbType + "/" + dbType + "_data_dump.sql"); for (Iterator iter = statements.iterator(); iter.hasNext(); ) { String query = (String) iter.next(); if (query == null || "".equals(query.trim())) { continue; } query = query.trim(); Statement s = conn.createStatement(); try { if (query.startsWith("UPDATE") || query.startsWith("INSERT") || query.startsWith("SET")) { s.executeUpdate(query); } else if (query.startsWith("SELECT")) { s.executeQuery(query); } else { throw new SQLException("Invalid query: " + query); } } catch (SQLException ex) { status = false; conn.rollback(); logger.error("Error importing data for " + query + ": " + ex, ex); this.context.put("exceptionMessage", ex.getMessage() + "\n" + query); break; } finally { s.close(); } } conn.setAutoCommit(autoCommit); return status; } catch (Exception e) { throw new ForumException(e); } } | public void saveMapping() throws SQLException { Connection connection = null; PreparedStatement ps = null; try { Class.forName("com.mysql.jdbc.Driver"); connection = (Connection) DriverManager.getConnection(this.jdbcURL); connection.setAutoCommit(false); String query = "INSERT INTO mapping(product_id, comp_id, count) VALUES(?,?,?)"; ps = (PreparedStatement) connection.prepareStatement(query); ps.setInt(1, this.productId); ps.setInt(2, this.componentId); ps.setInt(3, 1); ps.executeUpdate(); } catch (Exception ex) { connection.rollback(); } finally { try { connection.close(); } catch (Exception ex) { } try { ps.close(); } catch (Exception ex) { } } } | 17,368 |
0 | public static String encrypt(String password) { String sign = password; try { java.security.MessageDigest md = java.security.MessageDigest.getInstance("MD5"); md.update(sign.getBytes()); byte[] hash = md.digest(); StringBuffer hexString = new StringBuffer(); for (int i = 0; i < hash.length; i++) { if ((0xff & hash[i]) < 0x10) hexString.append("0" + Integer.toHexString((0xFF & hash[i]))); else hexString.append(Integer.toHexString(0xFF & hash[i])); } sign = hexString.toString(); } catch (Exception nsae) { nsae.printStackTrace(); } return sign; } | @Override protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException { String requestURI = req.getRequestURI(); logger.info("The requested URI: {}", requestURI); String parameter = requestURI.substring(requestURI.lastIndexOf(ARXIVID_ENTRY) + ARXIVID_ENTRY_LENGTH); int signIndex = parameter.indexOf(StringUtil.ARXIVID_SEGMENTID_DELIMITER); String arxivId = signIndex != -1 ? parameter.substring(0, signIndex) : parameter; String segmentId = signIndex != -1 ? parameter.substring(signIndex + 1) : null; if (arxivId == null) { logger.error("The request with an empty arxiv id parameter"); return; } String filePath = segmentId == null ? format("/opt/mocassin/aux-pdf/%s" + StringUtil.arxivid2filename(arxivId, "pdf")) : "/opt/mocassin/pdf/" + StringUtil.segmentid2filename(arxivId, Integer.parseInt(segmentId), "pdf"); if (!new File(filePath).exists()) { filePath = format("/opt/mocassin/aux-pdf/%s", StringUtil.arxivid2filename(arxivId, "pdf")); } try { FileInputStream fileInputStream = new FileInputStream(filePath); ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream(); IOUtils.copy(fileInputStream, byteArrayOutputStream); resp.setContentType("application/pdf"); resp.setHeader("Content-disposition", String.format("attachment; filename=%s", StringUtil.arxivid2filename(arxivId, "pdf"))); ServletOutputStream outputStream = resp.getOutputStream(); outputStream.write(byteArrayOutputStream.toByteArray()); outputStream.close(); } catch (FileNotFoundException e) { logger.error("Error while downloading: PDF file= '{}' not found", filePath); } catch (IOException e) { logger.error("Error while downloading the PDF file", e); } } | 17,369 |
1 | public void includeCss(Group group, Writer out, PageContext pageContext) throws IOException { ByteArrayOutputStream outtmp = new ByteArrayOutputStream(); if (AbstractGroupBuilder.getInstance().buildGroupJsIfNeeded(group, outtmp, pageContext.getServletContext())) { FileOutputStream fileStream = null; try { fileStream = new FileOutputStream(new File(RetentionHelper.buildFullRetentionFilePath(group, ".css"))); IOUtils.copy(new ByteArrayInputStream(outtmp.toByteArray()), fileStream); } finally { if (fileStream != null) fileStream.close(); } } } | private boolean performModuleInstallation(Model m) { String seldir = directoryHandler.getSelectedDirectory(); if (seldir == null) { MessageBox box = new MessageBox(shell, SWT.ICON_WARNING | SWT.OK); box.setText("Cannot install"); box.setMessage("A target directory must be selected."); box.open(); return false; } String sjar = pathText.getText(); File fjar = new File(sjar); if (!fjar.exists()) { MessageBox box = new MessageBox(shell, SWT.ICON_WARNING | SWT.OK); box.setText("Cannot install"); box.setMessage("A non-existing jar file has been selected."); box.open(); return false; } int count = 0; try { URLClassLoader loader = new URLClassLoader(new URL[] { fjar.toURI().toURL() }); JarInputStream jis = new JarInputStream(new FileInputStream(fjar)); JarEntry entry = jis.getNextJarEntry(); while (entry != null) { String name = entry.getName(); if (name.endsWith(".class")) { name = name.substring(0, name.length() - 6); name = name.replace('/', '.'); Class<?> cls = loader.loadClass(name); if (IAlgorithm.class.isAssignableFrom(cls) && !cls.isInterface() && (cls.getModifiers() & Modifier.ABSTRACT) == 0) { if (!testAlgorithm(cls, m)) return false; count++; } } entry = jis.getNextJarEntry(); } } catch (Exception e1) { Application.logexcept("Could not load classes from jar file.", e1); return false; } if (count == 0) { MessageBox box = new MessageBox(shell, SWT.ICON_WARNING | SWT.OK); box.setText("Cannot install"); box.setMessage("There don't seem to be any algorithms in the specified module."); box.open(); return false; } try { FileChannel ic = new FileInputStream(sjar).getChannel(); FileChannel oc = new FileOutputStream(seldir + File.separator + fjar.getName()).getChannel(); ic.transferTo(0, ic.size(), oc); ic.close(); oc.close(); } catch (Exception e) { Application.logexcept("Could not install module", e); return false; } result = new Object(); return true; } | 17,370 |
1 | public static int copy(File src, int amount, File dst) { final int BUFFER_SIZE = 1024; int amountToRead = amount; InputStream in = null; OutputStream out = null; try { in = new BufferedInputStream(new FileInputStream(src)); out = new BufferedOutputStream(new FileOutputStream(dst)); byte[] buf = new byte[BUFFER_SIZE]; while (amountToRead > 0) { int read = in.read(buf, 0, Math.min(BUFFER_SIZE, amountToRead)); if (read == -1) break; amountToRead -= read; out.write(buf, 0, read); } } catch (IOException e) { } finally { if (in != null) try { in.close(); } catch (IOException e) { } if (out != null) { try { out.flush(); } catch (IOException e) { } try { out.close(); } catch (IOException e) { } } } return amount - amountToRead; } | public static void save(String from, String recipient, InputStream in, MimeMessage message) throws IOException, MessagingException, DocumentVideException { ConversationManager conversationManager = FGDSpringUtils.getConversationManager(); conversationManager.beginConversation(); FGDDelegate delegate = new FGDDelegate(); UtilisateurIFGD utilisateur = delegate.getUtilisateurParCourriel(from); if (utilisateur == null) { String responseEmailSubject = "Votre adresse ne correspond pas à celle d'un utilisateur d'IntelliGID"; String responseEmailMessage = "<h3>Pour sauvegarder un courriel, vous devez être un utilisateur d'IntelliGID et l'adresse de courrier électronique utilisée doit être celle apparaissant dans votre profil.</h3>"; String sender = recipient.endsWith("localhost") ? FGDSpringUtils.getExpediteurSupport() : recipient; Map<String, String> recipients = new HashMap<String, String>(); recipients.put(from, null); MailUtils.sendSimpleHTMLMessage(recipients, responseEmailSubject, responseEmailMessage, sender); return; } File tempFile = File.createTempFile("email", ".eml"); tempFile.deleteOnExit(); BufferedInputStream bis = new BufferedInputStream(in); BufferedOutputStream bos = new BufferedOutputStream(new FileOutputStream(tempFile)); IOUtils.copy(bis, bos); IOUtils.closeQuietly(bis); IOUtils.closeQuietly(bos); if (message == null) { GestionnaireProprietesMimeMessageParser gestionnaire = new GestionnaireProprietesMimeMessageParser(); message = gestionnaire.asMimeMessage(new BufferedInputStream(new FileInputStream(tempFile))); } String subject; try { subject = message.getSubject().replace("Fwd:", "").trim(); } catch (MessagingException e) { subject = "Message sans sujet"; } File tempDir = new File(System.getProperty("java.io.tmpdir")); if (!tempDir.exists()) { tempDir.mkdirs(); } File emailFile = new File(tempDir, FilenameUtils.normalize(subject) + ".eml"); FileUtils.copyFile(tempFile, emailFile); FicheDocument ficheDocument = new FicheDocument(); ficheDocument.setFicheCompletee(false); ficheDocument.setDateCreationHorodatee(new Date()); ficheDocument.setUtilisateurSoumetteur(utilisateur); ficheDocument.getLangues().addAll(getLanguesDefaut()); ficheDocument.setCourriel(true); FileIOContenuFichierElectronique contenuFichier = new FileIOContenuFichierElectronique(emailFile, "multipart/alternative"); SupportDocument support = new SupportDocument(); support.setFicheDocument(ficheDocument); FichierElectroniqueUtils.setContenu(ficheDocument, support, contenuFichier, utilisateur); ficheDocument.setTitre(subject); delegate.sauvegarder(ficheDocument, utilisateur); String modifyEmail = "http://" + FGDSpringUtils.getServerHost() + ":" + FGDSpringUtils.getServerPort() + "/" + FGDSpringUtils.getApplicationName() + "/app/modifierDocument/id/" + ficheDocument.getId(); System.out.println(modifyEmail); String responseEmailSubject = "Veuillez compléter la fiche du courriel «" + subject + "»"; String responseEmailMessage = "<h3>Le courrier électronique a été sauvegardé, mais il est nécessaire de <a href=\"" + modifyEmail + "\">compléter sa fiche</a>.</h3>"; String sender = recipient.endsWith("localhost") ? FGDSpringUtils.getExpediteurSupport() : recipient; try { MailUtils.sendSimpleHTMLMessage(utilisateur, responseEmailSubject, responseEmailMessage, sender); } catch (Throwable e) { e.printStackTrace(); } conversationManager.commitTransaction(); tempFile.delete(); } | 17,371 |
0 | protected void processRequest(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException { ServletConfig config = getServletConfig(); ServletContext context = config.getServletContext(); try { String driver = context.getInitParameter("driver"); Class.forName(driver); String dbURL = context.getInitParameter("db"); String username = context.getInitParameter("username"); String password = ""; connection = DriverManager.getConnection(dbURL, username, password); } catch (ClassNotFoundException e) { System.out.println("Database driver not found."); } catch (SQLException e) { System.out.println("Error opening the db connection: " + e.getMessage()); } String action = ""; HttpSession session = request.getSession(); session.setMaxInactiveInterval(300); if (request.getParameter("action") != null) { action = request.getParameter("action"); } else { RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/login.jsp"); dispatcher.forward(request, response); return; } if (action.equals("login")) { String username = request.getParameter("username"); String password = request.getParameter("password"); MessageDigest md = null; try { md = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { error = "There was an error encrypting password."; session.setAttribute("error", error); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/error.jsp"); dispatcher.forward(request, response); return; } try { md.update(password.getBytes("UTF-8")); } catch (UnsupportedEncodingException e) { error = "There was an error encrypting password."; session.setAttribute("error", error); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/error.jsp"); dispatcher.forward(request, response); return; } String encrypted_password = (new BASE64Encoder()).encode(md.digest()); try { String sql = "SELECT * FROM person WHERE email LIKE '" + username + "' AND password='" + encrypted_password + "'"; dbStatement = connection.createStatement(); dbResultSet = dbStatement.executeQuery(sql); if (dbResultSet.next()) { Person person = new Person(dbResultSet.getString("fname"), dbResultSet.getString("lname"), dbResultSet.getString("address1"), dbResultSet.getString("address2"), dbResultSet.getString("city"), dbResultSet.getString("state"), dbResultSet.getString("zip"), dbResultSet.getString("email"), dbResultSet.getString("password"), dbResultSet.getInt("is_admin")); String member_type = dbResultSet.getString("member_type"); String person_id = Integer.toString(dbResultSet.getInt("id")); session.setAttribute("person", person); session.setAttribute("member_type", member_type); session.setAttribute("person_id", person_id); } else { notice = "Your username and/or password is incorrect."; request.setAttribute("notice", notice); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/index.jsp"); dispatcher.forward(request, response); return; } } catch (SQLException e) { error = "There was an error trying to login. (SQL Statement)"; session.setAttribute("error", error); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/error.jsp"); dispatcher.forward(request, response); return; } RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/index.jsp"); dispatcher.forward(request, response); return; } else { notice = "Unable to log you in. Please try again."; request.setAttribute("notice", notice); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/login.jsp"); dispatcher.forward(request, response); return; } } | public Constructor run() throws Exception { String path = "META-INF/services/" + BeanletApplicationContext.class.getName(); ClassLoader loader = Thread.currentThread().getContextClassLoader(); final Enumeration<URL> urls; if (loader == null) { urls = BeanletApplicationContext.class.getClassLoader().getResources(path); } else { urls = loader.getResources(path); } while (urls.hasMoreElements()) { URL url = urls.nextElement(); BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); try { String className = null; while ((className = reader.readLine()) != null) { final String name = className.trim(); if (!name.startsWith("#") && !name.startsWith(";") && !name.startsWith("//")) { final Class<?> cls; if (loader == null) { cls = Class.forName(name); } else { cls = Class.forName(name, true, loader); } int m = cls.getModifiers(); if (BeanletApplicationContext.class.isAssignableFrom(cls) && !Modifier.isAbstract(m) && !Modifier.isInterface(m)) { Constructor constructor = cls.getDeclaredConstructor(); if (!Modifier.isPublic(constructor.getModifiers())) { constructor.setAccessible(true); } return constructor; } else { throw new ClassCastException(cls.getName()); } } } } finally { reader.close(); } } throw new BeanletApplicationException("No " + "BeanletApplicationContext implementation " + "found."); } | 17,372 |
0 | protected long getUrlSize(String location) { long returnValue = 0L; try { URL url = new URL(location); java.net.HttpURLConnection conn = (java.net.HttpURLConnection) url.openConnection(); conn.setRequestMethod("HEAD"); returnValue = conn.getContentLength(); } catch (IOException ioe) { logger.error("Failed to find proper size for entity at " + location, ioe); } return returnValue; } | public ScoreModel(URL url) throws IOException { BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream())); String line; list = new ArrayList<ScoreModelItem>(); map = new HashMap<String, ScoreModelItem>(); line = in.readLine(); int n = 1; String[] rowAttrib; ScoreModelItem item; while ((line = in.readLine()) != null) { rowAttrib = line.split(";"); item = new ScoreModelItem(n, Double.valueOf(rowAttrib[3]), Double.valueOf(rowAttrib[4]), Double.valueOf(rowAttrib[2]), Double.valueOf(rowAttrib[5]), rowAttrib[1]); list.add(item); map.put(item.getHash(), item); n++; } in.close(); } | 17,373 |
1 | public static void main(String[] args) throws Exception { String uri = args[0]; Configuration conf = new Configuration(); FileSystem fs = FileSystem.get(URI.create(uri), conf); FSDataInputStream in = null; try { in = fs.open(new Path(uri)); IOUtils.copyBytes(in, System.out, 4096, false); in.seek(0); IOUtils.copyBytes(in, System.out, 4096, false); } finally { IOUtils.closeStream(in); } } | public static void copy(File src, File dst) { try { FileChannel srcChannel = new FileInputStream(src).getChannel(); FileChannel dstChannel = new FileOutputStream(dst).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); srcChannel = null; dstChannel.close(); dstChannel = null; } catch (IOException ex) { Tools.logException(Tools.class, ex, dst.getAbsolutePath()); } } | 17,374 |
1 | public void markAsCachedHelper(Item item, Date from, Date to, Map<String, Boolean> properties) { if (properties.size() == 0) { return; } Connection conn = null; Iterable<Integer> props = representer.getInternalReps(properties.keySet()); Integer hostIndex = representer.lookUpInternalRep(item.getResolved().getHost()); HashMap<Integer, long[]> periods = new HashMap<Integer, long[]>(); for (Map.Entry<String, Boolean> e : properties.entrySet()) { periods.put(representer.lookUpInternalRep(e.getKey()), new long[] { from.getTime(), to.getTime(), e.getValue() ? 1 : 0 }); } try { conn = getConnection(); conn.setAutoCommit(false); conn.setSavepoint(); PreparedStatement stmt = null; try { stmt = conn.prepareStatement("SELECT MIN(starttime), MAX(endtime), MAX(hasvalues) FROM cachedperiods WHERE " + "id = ? AND host = ? AND prop = ? AND " + "starttime <= ? AND endtime >= ?"); stmt.setString(1, item.getResolved().getId()); stmt.setInt(2, hostIndex); stmt.setLong(4, to.getTime()); stmt.setLong(5, from.getTime()); for (Map.Entry<Integer, long[]> e1 : periods.entrySet()) { stmt.setInt(3, e1.getKey()); ResultSet rs = stmt.executeQuery(); if (rs.next()) { e1.getValue()[0] = Math.min(rs.getLong(1), e1.getValue()[0]); e1.getValue()[1] = Math.max(rs.getLong(2), e1.getValue()[1]); e1.getValue()[2] = Math.max(rs.getInt(3), e1.getValue()[2]); } StorageUtils.close(rs); } StorageUtils.close(stmt); stmt = conn.prepareStatement("DELETE FROM cachedperiods WHERE " + "id = ? AND host = ? AND " + "starttime <= ? AND endtime >= ? AND " + "prop IN (" + StringUtils.join(props.iterator(), ",") + ")"); stmt.setString(1, item.getResolved().getId()); stmt.setInt(2, hostIndex); stmt.setLong(3, to.getTime()); stmt.setLong(4, from.getTime()); stmt.executeUpdate(); StorageUtils.close(stmt); stmt = conn.prepareStatement("INSERT INTO cachedperiods (id, host, prop, starttime, endtime, hasvalues) VALUES (?, ?, ?, ?, ?, ?)"); stmt.setString(1, item.getResolved().getId()); stmt.setInt(2, hostIndex); for (Map.Entry<Integer, long[]> e2 : periods.entrySet()) { stmt.setInt(3, e2.getKey()); stmt.setLong(4, e2.getValue()[0]); stmt.setLong(5, e2.getValue()[1]); stmt.setInt(6, (int) e2.getValue()[2]); stmt.executeUpdate(); } } finally { StorageUtils.close(stmt); } conn.commit(); } catch (SQLException ex) { Logger.getLogger(MetaDataStoragerImpl.class.getName()).log(Level.SEVERE, "Cannot update cachedperiods table.", ex); try { conn.rollback(); } catch (SQLException ex1) { Logger.getLogger(MetaDataStoragerImpl.class.getName()).log(Level.SEVERE, "Could not roll back database, please consult system administrator.", ex1); } } finally { StorageUtils.close(conn); } } | @Override public boolean delete(String consulta, boolean autocommit, int transactionIsolation, Connection cx) throws SQLException { filasDelete = 0; if (!consulta.contains(";")) { this.tipoConsulta = new Scanner(consulta); if (this.tipoConsulta.hasNext()) { execConsulta = this.tipoConsulta.next(); if (execConsulta.equalsIgnoreCase("delete")) { Connection conexion = cx; Statement st = null; try { conexion.setAutoCommit(autocommit); if (transactionIsolation == 1 || transactionIsolation == 2 || transactionIsolation == 4 || transactionIsolation == 8) { conexion.setTransactionIsolation(transactionIsolation); } else { throw new IllegalArgumentException("Valor invalido sobre TransactionIsolation,\n TRANSACTION_NONE no es soportado por MySQL"); } st = (Statement) conexion.createStatement(ResultSetImpl.TYPE_SCROLL_SENSITIVE, ResultSetImpl.CONCUR_UPDATABLE); conexion.setReadOnly(false); filasDelete = st.executeUpdate(consulta.trim(), Statement.RETURN_GENERATED_KEYS); if (filasDelete > -1) { if (autocommit == false) { conexion.commit(); } return true; } else { return false; } } catch (MySQLIntegrityConstraintViolationException e) { if (autocommit == false) { try { conexion.rollback(); System.out.println("Se ejecuto un Rollback"); } catch (MySQLTransactionRollbackException sqlE) { System.out.println("No se ejecuto un Rollback"); sqlE.printStackTrace(); } catch (SQLException se) { se.printStackTrace(); } } e.printStackTrace(); return false; } catch (MySQLNonTransientConnectionException e) { if (autocommit == false) { try { conexion.rollback(); System.out.println("Se ejecuto un Rollback"); } catch (MySQLTransactionRollbackException sqlE) { System.out.println("No se ejecuto un Rollback"); sqlE.printStackTrace(); } catch (SQLException se) { se.printStackTrace(); } } e.printStackTrace(); return false; } catch (MySQLDataException e) { System.out.println("Datos incorrectos"); if (autocommit == false) { try { conexion.rollback(); System.out.println("Se ejecuto un Rollback"); } catch (MySQLTransactionRollbackException sqlE) { System.out.println("No se ejecuto un Rollback"); sqlE.printStackTrace(); } catch (SQLException se) { se.printStackTrace(); } } return false; } catch (MySQLSyntaxErrorException e) { System.out.println("Error en la sintaxis de la Consulta en MySQL"); if (autocommit == false) { try { conexion.rollback(); System.out.println("Se ejecuto un Rollback"); } catch (MySQLTransactionRollbackException sqlE) { System.out.println("No se ejecuto un Rollback"); sqlE.printStackTrace(); } catch (SQLException se) { se.printStackTrace(); } } return false; } catch (SQLException e) { if (autocommit == false) { try { conexion.rollback(); System.out.println("Se ejecuto un Rollback"); } catch (MySQLTransactionRollbackException sqlE) { System.out.println("No se ejecuto un Rollback"); sqlE.printStackTrace(); } catch (SQLException se) { se.printStackTrace(); } } e.printStackTrace(); return false; } finally { try { if (st != null) { if (!st.isClosed()) { st.close(); } } if (!conexion.isClosed()) { conexion.close(); } } catch (NullPointerException ne) { ne.printStackTrace(); } catch (SQLException e) { e.printStackTrace(); } } } else { throw new IllegalArgumentException("No es una instruccion Delete"); } } else { try { throw new JMySQLException("Error Grave , notifique al departamento de Soporte Tecnico \n" + email); } catch (JMySQLException ex) { Logger.getLogger(JMySQL.class.getName()).log(Level.SEVERE, null, ex); return false; } } } else { throw new IllegalArgumentException("No estan permitidas las MultiConsultas en este metodo"); } } | 17,375 |
1 | private void pack() { String szImageDir = m_szBasePath + "Images"; File fImageDir = new File(szImageDir); fImageDir.mkdirs(); String ljIcon = System.getProperty("user.home"); ljIcon += System.getProperty("file.separator") + "MochaJournal" + System.getProperty("file.separator") + m_szUsername + System.getProperty("file.separator") + "Cache"; File fUserDir = new File(ljIcon); File[] fIcons = fUserDir.listFiles(); int iSize = fIcons.length; for (int i = 0; i < iSize; i++) { try { File fOutput = new File(fImageDir, fIcons[i].getName()); if (!fOutput.exists()) { fOutput.createNewFile(); FileOutputStream fOut = new FileOutputStream(fOutput); FileInputStream fIn = new FileInputStream(fIcons[i]); while (fIn.available() > 0) fOut.write(fIn.read()); } } catch (IOException e) { System.err.println(e); } } try { FileOutputStream fOut; InputStream fLJIcon = getClass().getResourceAsStream("/org/homedns/krolain/MochaJournal/Images/userinfo.gif"); File fLJOut = new File(fImageDir, "user.gif"); if (!fLJOut.exists()) { fOut = new FileOutputStream(fLJOut); while (fLJIcon.available() > 0) fOut.write(fLJIcon.read()); } fLJIcon = getClass().getResourceAsStream("/org/homedns/krolain/MochaJournal/Images/communitynfo.gif"); fLJOut = new File(fImageDir, "comm.gif"); if (!fLJOut.exists()) { fOut = new FileOutputStream(fLJOut); while (fLJIcon.available() > 0) fOut.write(fLJIcon.read()); } fLJIcon = getClass().getResourceAsStream("/org/homedns/krolain/MochaJournal/Images/icon_private.gif"); fLJOut = new File(fImageDir, "icon_private.gif"); if (!fLJOut.exists()) { fOut = new FileOutputStream(fLJOut); while (fLJIcon.available() > 0) fOut.write(fLJIcon.read()); } fLJIcon = getClass().getResourceAsStream("/org/homedns/krolain/MochaJournal/Images/icon_protected.gif"); fLJOut = new File(fImageDir, "icon_protected.gif"); if (!fLJOut.exists()) { fOut = new FileOutputStream(fLJOut); while (fLJIcon.available() > 0) fOut.write(fLJIcon.read()); } } catch (IOException e) { System.err.println(e); } } | @Override public void sendContent(OutputStream out, Range range, Map<String, String> params, String contentType) throws IOException { LOGGER.debug("DOWNLOAD - Send content: " + realFile.getAbsolutePath()); LOGGER.debug("Output stream: " + out.toString()); if (ServerConfiguration.isDynamicSEL()) { LOGGER.error("IS DINAMIC SEL????"); } else { } if (".tokens".equals(realFile.getName()) || ".response".equals(realFile.getName()) || ".request".equals(realFile.getName()) || isAllowedClient) { FileInputStream in = null; try { in = new FileInputStream(realFile); int bytes = IOUtils.copy(in, out); LOGGER.debug("System resource or Allowed Client wrote bytes: " + bytes); out.flush(); } catch (Exception e) { LOGGER.error("Error while uploading over encryption system " + realFile.getName() + " file", e); } finally { IOUtils.closeQuietly(in); } } else { FileInputStream in = null; try { in = new FileInputStream(realFile); int bytes = IOUtils.copy(in, out); LOGGER.debug("System resource or Allowed Client wrote bytes: " + bytes); out.flush(); } catch (Exception e) { LOGGER.error("Error while uploading over encryption system " + realFile.getName() + " file", e); } finally { IOUtils.closeQuietly(in); } } } | 17,376 |
1 | private static void copy(File source, File target) throws IOException { InputStream is = null; OutputStream os = null; try { is = new BufferedInputStream(new FileInputStream(source)); os = new BufferedOutputStream(new FileOutputStream(target)); int b; while ((b = is.read()) > -1) os.write(b); } finally { try { if (is != null) is.close(); } catch (IOException ignore) { } try { if (os != null) os.close(); } catch (IOException ignore) { } } } | public File createTemporaryFile() throws IOException { URL url = clazz.getResource(resource); if (url == null) { throw new IOException("No resource available from '" + clazz.getName() + "' for '" + resource + "'"); } String extension = getExtension(resource); String prefix = "resource-temporary-file-creator"; File file = File.createTempFile(prefix, extension); InputStream input = url.openConnection().getInputStream(); FileOutputStream output = new FileOutputStream(file); com.volantis.synergetics.io.IOUtils.copyAndClose(input, output); return file; } | 17,377 |
0 | private static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | @Override public void onCreate(Bundle savedInstanceState) { super.onCreate(savedInstanceState); setContentView(R.layout.main); mTextView = (TextView) findViewById(R.id.textView001); mButton = (Button) findViewById(R.id.Button001); tm = (TelephonyManager) this.getSystemService(Context.TELEPHONY_SERVICE); mButton.setOnClickListener(new Button.OnClickListener() { @Override public void onClick(View v) { GsmCellLocation gcl = (GsmCellLocation) tm.getCellLocation(); int cid = gcl.getCid(); int lac = gcl.getLac(); int mcc = Integer.valueOf(tm.getNetworkOperator().substring(0, 3)); int mnc = Integer.valueOf(tm.getNetworkOperator().substring(3, 5)); try { JSONObject holder = new JSONObject(); holder.put("version", "1.1.0"); holder.put("host", "maps.google.com"); holder.put("request_address", true); JSONArray array = new JSONArray(); JSONObject data = new JSONObject(); data.put("cell_id", cid); data.put("location_area_code", lac); data.put("mobile_country_code", mcc); data.put("mobile_network_code", mnc); array.put(data); holder.put("cell_towers", array); DefaultHttpClient client = new DefaultHttpClient(); HttpPost post = new HttpPost("http://www.google.com/loc/json"); StringEntity se = new StringEntity(holder.toString()); post.setEntity(se); HttpResponse resp = client.execute(post); HttpEntity entity = resp.getEntity(); BufferedReader br = new BufferedReader(new InputStreamReader(entity.getContent())); StringBuffer sb = new StringBuffer(); String result = br.readLine(); while (result != null) { sb.append(result); result = br.readLine(); } JSONObject jsonObject = new JSONObject(sb.toString()); JSONObject jsonObject1 = new JSONObject(jsonObject.getString("location")); getAddress(jsonObject1.getString("latitude"), jsonObject1.getString("longitude")); } catch (Exception e) { } } }); } | 17,378 |
1 | public static void copyFile(File sourceFile, File destFile) throws IOException { if (!destFile.exists()) { destFile.createNewFile(); } FileChannel source = null; FileChannel destination = null; try { source = new FileInputStream(sourceFile).getChannel(); destination = new FileOutputStream(destFile).getChannel(); long count = 0; long size = source.size(); while ((count += destination.transferFrom(source, 0, size - count)) < size) ; } finally { if (source != null) { source.close(); } if (destination != null) { destination.close(); } } } | public static File unGzip(File infile, boolean deleteGzipfileOnSuccess) throws IOException { GZIPInputStream gin = new GZIPInputStream(new FileInputStream(infile)); File outFile = new File(infile.getParent(), infile.getName().replaceAll("\\.gz$", "")); FileOutputStream fos = new FileOutputStream(outFile); byte[] buf = new byte[100000]; int len; while ((len = gin.read(buf)) > 0) fos.write(buf, 0, len); gin.close(); fos.close(); if (deleteGzipfileOnSuccess) infile.delete(); return outFile; } | 17,379 |
1 | private void parseExternalCss(Document d) throws XPathExpressionException, IOException { InputStream is = null; try { XPath xp = xpf.newXPath(); XPathExpression xpe = xp.compile("//link[@type='text/css']/@href"); NodeList nl = (NodeList) xpe.evaluate(d, XPathConstants.NODESET); for (int i = 0; i < nl.getLength(); i++) { Attr a = (Attr) nl.item(i); String url = a.getValue(); URL u = new URL(url); is = new BufferedInputStream(u.openStream()); ByteArrayOutputStream baos = new ByteArrayOutputStream(); IOUtils.copy(is, baos); parser.add(new String(baos.toByteArray(), "UTF-8")); Element linkNode = a.getOwnerElement(); Element parent = (Element) linkNode.getParentNode(); parent.removeChild(linkNode); IOUtils.closeQuietly(is); is = null; } } finally { IOUtils.closeQuietly(is); } } | public static Document convertHtmlToXml(final InputStream htmlInputStream, final String classpathXsltResource, final String encoding) { Parser p = new Parser(); javax.xml.parsers.DocumentBuilder db; try { db = javax.xml.parsers.DocumentBuilderFactory.newInstance().newDocumentBuilder(); } catch (ParserConfigurationException e) { log.error("", e); throw new RuntimeException(); } Document document = db.newDocument(); InputStream is = htmlInputStream; if (log.isDebugEnabled()) { ByteArrayOutputStream baos; baos = new ByteArrayOutputStream(); try { IOUtils.copy(is, baos); } catch (IOException e) { log.error("Fail to make input stream copy.", e); } IOUtils.closeQuietly(is); ByteArrayInputStream byteArrayInputStream; byteArrayInputStream = new ByteArrayInputStream(baos.toByteArray()); try { IOUtils.toString(new ByteArrayInputStream(baos.toByteArray()), "UTF-8"); } catch (IOException e) { log.error("", e); } IOUtils.closeQuietly(byteArrayInputStream); is = new ByteArrayInputStream(baos.toByteArray()); } try { InputSource iSource = new InputSource(is); iSource.setEncoding(encoding); Source transformerSource = new SAXSource(p, iSource); Result result = new DOMResult(document); Transformer xslTransformer = getTransformerByName(classpathXsltResource, false); try { xslTransformer.transform(transformerSource, result); } catch (TransformerException e) { throw new RuntimeException(e); } } finally { try { is.close(); } catch (Exception e) { log.warn("", e); } } return document; } | 17,380 |
0 | private void populatePortfolioEntry(ActionResponse resp, PortfolioEntry e, String market) throws Exception { String tmp = getURL(market, e); if (tmp == null) { tmp = URL_QUOTE_DATA; } tmp = tmp.replace("@", e.getSymbol()); URL url = new URL(tmp); HttpURLConnection conn = (HttpURLConnection) url.openConnection(); BufferedReader in = null; try { int status = conn.getResponseCode(); if (status == 200) { in = new BufferedReader(new InputStreamReader(conn.getInputStream())); StringBuffer responseBody = new StringBuffer(); while (true) { String line = in.readLine(); if (line == null) break; responseBody.append(line); } ArrayList<String> data = parseData(responseBody.toString(), ","); if (data.size() == 2) { e.setName(MiscUtils.trimChars(data.get(0), '"')); String val = data.get(1); val = MiscUtils.trimChars(val.trim(), '\r'); val = MiscUtils.trimChars(val.trim(), '\n'); BigDecimal d = new BigDecimal(val); e.setPricePerShare(d); } else { resp.setErrorCode(ActionResponse.GENERAL_ERROR); resp.setErrorMessage("Error retrieving data"); } } else { resp.setErrorCode(ActionResponse.GENERAL_ERROR); resp.setErrorMessage("Error retrieving data Http code: " + status); } } finally { if (in != null) in.close(); } } | public static void encryptFile(String input, String output, String pwd) throws Exception { CipherOutputStream out; InputStream in; Cipher cipher; SecretKey key; byte[] byteBuffer; cipher = Cipher.getInstance("DES"); key = new SecretKeySpec(pwd.getBytes(), "DES"); cipher.init(Cipher.ENCRYPT_MODE, key); in = new FileInputStream(input); out = new CipherOutputStream(new FileOutputStream(output), cipher); byteBuffer = new byte[1024]; for (int n; (n = in.read(byteBuffer)) != -1; out.write(byteBuffer, 0, n)) ; in.close(); out.close(); } | 17,381 |
0 | public void createResource(String resourceUri, boolean publish, User user) throws IOException { PermissionAPI perAPI = APILocator.getPermissionAPI(); Logger.debug(this.getClass(), "createResource"); resourceUri = stripMapping(resourceUri); String hostName = getHostname(resourceUri); String path = getPath(resourceUri); String folderName = getFolderName(path); String fileName = getFileName(path); fileName = deleteSpecialCharacter(fileName); if (fileName.startsWith(".")) { return; } Host host = HostFactory.getHostByHostName(hostName); Folder folder = FolderFactory.getFolderByPath(folderName, host); boolean hasPermission = perAPI.doesUserHavePermission(folder, PERMISSION_WRITE, user, false); if (hasPermission) { if (!checkFolderFilter(folder, fileName)) { throw new IOException("The file doesn't comply the folder's filter"); } if (host.getInode() != 0 && folder.getInode() != 0) { File file = new File(); file.setTitle(fileName); file.setFileName(fileName); file.setShowOnMenu(false); file.setLive(publish); file.setWorking(true); file.setDeleted(false); file.setLocked(false); file.setModDate(new Date()); String mimeType = FileFactory.getMimeType(fileName); file.setMimeType(mimeType); String author = user.getFullName(); file.setAuthor(author); file.setModUser(author); file.setSortOrder(0); file.setShowOnMenu(false); try { Identifier identifier = null; if (!isResource(resourceUri)) { WebAssetFactory.createAsset(file, user.getUserId(), folder, publish); identifier = IdentifierCache.getIdentifierFromIdentifierCache(file); } else { File actualFile = FileFactory.getFileByURI(path, host, false); identifier = IdentifierCache.getIdentifierFromIdentifierCache(actualFile); WebAssetFactory.createAsset(file, user.getUserId(), folder, identifier, false, false); WebAssetFactory.publishAsset(file); String assetsPath = FileFactory.getRealAssetsRootPath(); new java.io.File(assetsPath).mkdir(); java.io.File workingIOFile = FileFactory.getAssetIOFile(file); DotResourceCache vc = CacheLocator.getVeloctyResourceCache(); vc.remove(ResourceManager.RESOURCE_TEMPLATE + workingIOFile.getPath()); if (file != null && file.getInode() > 0) { byte[] currentData = new byte[0]; FileInputStream is = new FileInputStream(workingIOFile); int size = is.available(); currentData = new byte[size]; is.read(currentData); java.io.File newVersionFile = FileFactory.getAssetIOFile(file); vc.remove(ResourceManager.RESOURCE_TEMPLATE + newVersionFile.getPath()); FileChannel channelTo = new FileOutputStream(newVersionFile).getChannel(); ByteBuffer currentDataBuffer = ByteBuffer.allocate(currentData.length); currentDataBuffer.put(currentData); currentDataBuffer.position(0); channelTo.write(currentDataBuffer); channelTo.force(false); channelTo.close(); } java.util.List<Tree> parentTrees = TreeFactory.getTreesByChild(file); for (Tree tree : parentTrees) { Tree newTree = TreeFactory.getTree(tree.getParent(), file.getInode()); if (newTree.getChild() == 0) { newTree.setParent(tree.getParent()); newTree.setChild(file.getInode()); newTree.setRelationType(tree.getRelationType()); newTree.setTreeOrder(0); TreeFactory.saveTree(newTree); } } } List<Permission> permissions = perAPI.getPermissions(folder); for (Permission permission : permissions) { Permission filePermission = new Permission(); filePermission.setPermission(permission.getPermission()); filePermission.setRoleId(permission.getRoleId()); filePermission.setInode(identifier.getInode()); perAPI.save(filePermission); } } catch (Exception ex) { Logger.debug(this, ex.toString()); } } } else { throw new IOException("You don't have access to add that folder/host"); } } | private File tmpFileFromURL(String name) { if (name == null) { System.out.println("ERROR: the provided URL is invalid, aborting download!"); return null; } try { final URL url = new URL(name); final InputStream in = url.openStream(); final URLConnection conn = url.openConnection(); final int total = conn.getContentLength(); final String contentType = conn.getContentType(); logger.fine("DOWNLOADING Content-type: " + contentType); if (contentType.trim().toLowerCase().indexOf("html") != -1) { return tmpFileFromURL(extractRedirectURL(in)); } final FileManager fileManager = system.getFileManager(); final File dest = fileManager.createTmpModuleFile(); final FileOutputStream out = new FileOutputStream(dest); final byte[] buf = new byte[2048]; logger.fine("Total number of bytes to download: " + total); int len, current = 0; progress(new ProgressEvent(this, "Downloading " + name, 0)); while ((len = in.read(buf)) > 0) { current += len; progress(new ProgressEvent(this, "Downloading " + name, (int) ((current * 100.0) / total))); out.write(buf, 0, len); out.flush(); } in.close(); out.flush(); out.close(); return dest; } catch (IOException ex) { progress(new ProgressEvent(" ERROR: downloading of " + name + " failed. URL does not exist!")); return null; } } | 17,382 |
1 | private CharBuffer decodeToFile(ReplayInputStream inStream, String backingFilename, String encoding) throws IOException { CharBuffer charBuffer = null; BufferedReader reader = new BufferedReader(new InputStreamReader(inStream, encoding)); File backingFile = new File(backingFilename); this.decodedFile = File.createTempFile(backingFile.getName(), WRITE_ENCODING, backingFile.getParentFile()); FileOutputStream fos; fos = new FileOutputStream(this.decodedFile); IOUtils.copy(reader, fos, WRITE_ENCODING); fos.close(); charBuffer = getReadOnlyMemoryMappedBuffer(this.decodedFile).asCharBuffer(); return charBuffer; } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 17,383 |
1 | public boolean setSchedule(Schedule s) { PreparedStatement pst1 = null; PreparedStatement pst2 = null; PreparedStatement pst3 = null; ResultSet rs2 = null; boolean retVal = true; try { conn = getConnection(); pst1 = conn.prepareStatement("INSERT INTO timetable (recipe_id, time, meal) VALUES (?, ?, ?);"); pst2 = conn.prepareStatement("SELECT * FROM timetable WHERE time BETWEEN ? AND ?"); pst3 = conn.prepareStatement("DELETE FROM timetable WHERE time = ? AND meal = ? AND recipe_id = ?"); long dateInMillis = s.getDate().getTime(); SimpleDateFormat sdf = new SimpleDateFormat("yyyy-MM-dd HH:mm:sss"); Date beginDate = null, endDate = null; try { String temp = sdf.format(new java.util.Date(dateInMillis)); sdf.applyPattern("yyyy-MM-dd"); java.util.Date temppidate = sdf.parse(temp); beginDate = new Date(temppidate.getTime()); endDate = new Date(temppidate.getTime() + (24 * 3600 * 1000)); } catch (Exception e) { System.out.println("Ollos virhe saapunut, siks ohjelmamme kaatunut! --Vanha kalevalalainen sananlasku--"); e.printStackTrace(); } pst2.setDate(1, beginDate); pst2.setDate(2, endDate); rs2 = pst2.executeQuery(); MainFrame.appendStatusText("Poistetaan p�iv�n \"" + s.getDate() + "\" vanhat reseptit kannasta"); while (rs2.next()) { pst3.clearParameters(); pst3.setTimestamp(1, rs2.getTimestamp("time")); pst3.setInt(2, rs2.getInt("meal")); pst3.setInt(3, rs2.getInt("recipe_id")); pst3.executeUpdate(); } if (s.getBreakfast() != null) { MainFrame.appendStatusText("Lis�t��n aamupala \"" + s.getBreakfast().getName() + "\""); pst1.clearParameters(); pst1.setInt(1, s.getBreakfast().getId()); pst1.setTimestamp(2, new Timestamp(s.getDate().getTime())); pst1.setInt(3, 1); pst1.executeUpdate(); } if (s.getLunch() != null) { MainFrame.appendStatusText("Lis�t��n lounas \"" + s.getLunch().getName() + "\""); pst1.clearParameters(); pst1.setInt(1, s.getLunch().getId()); pst1.setTimestamp(2, new Timestamp(s.getDate().getTime())); pst1.setInt(3, 2); pst1.executeUpdate(); } if (s.getSnack() != null) { MainFrame.appendStatusText("Lis�t��n v�lipala \"" + s.getSnack().getName() + "\""); pst1.clearParameters(); pst1.setInt(1, s.getSnack().getId()); pst1.setTimestamp(2, new Timestamp(s.getDate().getTime())); pst1.setInt(3, 3); pst1.executeUpdate(); } if (s.getDinner() != null) { MainFrame.appendStatusText("Lis�t��n p�iv�llinen \"" + s.getDinner().getName() + "\""); pst1.clearParameters(); pst1.setInt(1, s.getDinner().getId()); pst1.setTimestamp(2, new Timestamp(s.getDate().getTime())); pst1.setInt(3, 4); pst1.executeUpdate(); } if (s.getSupper() != null) { MainFrame.appendStatusText("Lis�t��n illallinen \"" + s.getSupper().getName() + "\""); pst1.clearParameters(); pst1.setInt(1, s.getSupper().getId()); pst1.setTimestamp(2, new Timestamp(s.getDate().getTime())); pst1.setInt(3, 5); pst1.executeUpdate(); } conn.commit(); } catch (Exception e) { try { conn.rollback(); } catch (SQLException e1) { MainFrame.appendStatusText("Aterioiden lis�ys ep�onnistui"); e1.printStackTrace(); } MainFrame.appendStatusText("Can't add schedule, the exception was " + e.getMessage()); } finally { try { if (rs2 != null) rs2.close(); rs2 = null; if (pst1 != null) pst1.close(); pst1 = null; if (pst2 != null) pst2.close(); pst2 = null; } catch (SQLException sqle) { MainFrame.appendStatusText("Can't close database connection."); } } return retVal; } | public void unlock(String oid, String key) throws PersisterException { String lock = getLock(oid); if (lock == null) { throw new PersisterException("Object does not exist: OID = " + oid); } else if (!NULL.equals(lock) && (!lock.equals(key))) { throw new PersisterException("The object is currently locked with another key: OID = " + oid + ", LOCK = " + lock + ", KEY = " + key); } Connection conn = null; PreparedStatement ps = null; try { conn = _ds.getConnection(); conn.setAutoCommit(true); ps = conn.prepareStatement("update " + _table_name + " set " + _key_col + " = NULL, " + _ts_col + " = ? where " + _oid_col + " = ?"); ps.setLong(1, System.currentTimeMillis()); ps.setString(2, oid); ps.executeUpdate(); } catch (Throwable th) { if (conn != null) { try { conn.rollback(); } catch (Throwable th2) { } } throw new PersisterException("Failed to unlock object: OID = " + oid + ", KEY = " + key, th); } finally { if (ps != null) { try { ps.close(); } catch (Throwable th) { } } if (conn != null) { try { conn.close(); } catch (Throwable th) { } } } } | 17,384 |
1 | @Override public InputStream getInputStream() throws IOException { if (dfos == null) { int deferredOutputStreamThreshold = Config.getInstance().getDeferredOutputStreamThreshold(); dfos = new DeferredFileOutputStream(deferredOutputStreamThreshold, Definitions.PROJECT_NAME, "." + Definitions.TMP_EXTENSION); try { IOUtils.copy(is, dfos); } finally { dfos.close(); } } return dfos.getDeferredInputStream(); } | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 17,385 |
0 | public int updatewuliao(Addwuliao aw) { int flag = 0; Connection conn = null; PreparedStatement pm = null; try { conn = Pool.getConnection(); conn.setAutoCommit(false); pm = conn.prepareStatement("update addwuliao set inname=?,innum=?,inprice=?,productsdetail=?where pid=?"); pm.setString(1, aw.getInname()); pm.setInt(2, aw.getInnum()); pm.setDouble(3, aw.getInprice()); pm.setString(4, aw.getProductsdetail()); pm.setString(5, aw.getPid()); flag = pm.executeUpdate(); conn.commit(); Pool.close(pm); Pool.close(conn); } catch (Exception e) { e.printStackTrace(); try { conn.rollback(); } catch (Exception ep) { ep.printStackTrace(); } Pool.close(pm); Pool.close(conn); } finally { Pool.close(pm); Pool.close(conn); } return flag; } | private String encryptPassword(String password) throws NoSuchAlgorithmException { StringBuffer encryptedPassword = new StringBuffer(); MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.reset(); md5.update(password.getBytes()); byte digest[] = md5.digest(); for (int i = 0; i < digest.length; i++) { String hex = Integer.toHexString(0xFF & digest[i]); if (hex.length() == 1) { encryptedPassword.append('0'); } encryptedPassword.append(hex); } return encryptedPassword.toString(); } | 17,386 |
1 | private static List<CountryEntry> retrieveCountries() throws IOException { URL url = new URL("http://" + ISO_3166_HOST + ISO_3166_TXT_FILE_PATH); BufferedReader input = new BufferedReader(new InputStreamReader(url.openStream())); List<CountryEntry> countries = new LinkedList<CountryEntry>(); boolean parsing = false; int trCount = 0; int tdCount = 0; CountryEntry current = new CountryEntry(); String nextLine = input.readLine(); while (nextLine != null) { if (nextLine.startsWith("<table")) { parsing = true; } if (nextLine.startsWith("</table>")) { break; } if (parsing) { if (nextLine.startsWith("<tr")) { trCount++; } else { if ((trCount > 1 && nextLine.startsWith("<td"))) { tdCount++; String data = pullData(nextLine); switch(tdCount) { case 1: current.setName(getCountryName(data)); break; case 2: current.setNumber(data); break; case 3: current.setAlpha3(data); break; case 4: current.setAlpha2(data); break; case 5: countries.add(current); current = new CountryEntry(); tdCount = 0; break; default: String msg = "Parsing error. Unexpected column: [" + data + "]"; throw new IllegalStateException(msg); } } } } nextLine = input.readLine(); } input.close(); return countries; } | private void calculateCoverageAndSpecificity(String mainCat) throws IOException, JSONException { for (String cat : Rules.categoryTree.get(mainCat)) { for (String queryString : Rules.queries.get(cat)) { String urlEncodedQueryString = URLEncoder.encode(queryString, "UTF-8"); URL url = new URL("http://boss.yahooapis.com/ysearch/web/v1/" + urlEncodedQueryString + "?appid=" + yahoo_ap_id + "&count=4&format=json&sites=" + site); URLConnection con = url.openConnection(); String line; StringBuilder builder = new StringBuilder(); BufferedReader reader = new BufferedReader(new InputStreamReader(con.getInputStream())); while ((line = reader.readLine()) != null) { builder.append(line); } String response = builder.toString(); JSONObject json = new JSONObject(response); JSONObject jsonObject = json.getJSONObject("ysearchresponse"); String totalhits = jsonObject.getString("totalhits"); long totalhitsLong = Long.parseLong(totalhits); QueryInfo qinfo = new QueryInfo(queryString, totalhitsLong); queryInfoMap.put(queryString, qinfo); cov.put(cat, cov.get(cat) + totalhitsLong); if (totalhitsLong == 0) { continue; } ja = jsonObject.getJSONArray("resultset_web"); for (int j = 0; j < ja.length(); j++) { JSONObject k = ja.getJSONObject(j); String dispurl = filterBold(k.getString("url")); qinfo.addUrl(dispurl); } } } calculateSpecificity(mainCat); } | 17,387 |
1 | public static byte[] readUrl(URL url) throws IOException { ByteArrayOutputStream os = new ByteArrayOutputStream(); InputStream is = url.openStream(); try { IOUtils.copy(is, os); return os.toByteArray(); } finally { is.close(); } } | public void test() throws Exception { StringDocument doc = new StringDocument("Test", "UTF-8"); doc.open(); try { assertEquals("UTF-8", doc.getCharacterEncoding()); assertEquals("Test", doc.getText()); InputStream input = doc.getInputStream(); StringWriter writer = new StringWriter(); try { IOUtils.copy(input, writer, "UTF-8"); } finally { writer.close(); } assertEquals("Test", writer.toString()); } finally { doc.close(); } } | 17,388 |
0 | public String calculateDigest(String str) { StringBuffer s = new StringBuffer(); try { MessageDigest md = MessageDigest.getInstance("SHA-1"); md.update(str.getBytes()); byte[] digest = md.digest(); for (byte d : digest) { s.append(Integer.toHexString((int) (d & 0xff))); } } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } return s.toString(); } | private String _doPost(final String urlStr, final Map<String, String> params) { String paramsStr = ""; for (String key : params.keySet()) { try { paramsStr += URLEncoder.encode(key, ENCODING) + "=" + URLEncoder.encode(params.get(key), ENCODING) + "&"; } catch (UnsupportedEncodingException e) { s_logger.debug("UnsupportedEncodingException caught. Trying to encode: " + key + " and " + params.get(key)); return null; } } if (paramsStr.length() == 0) { s_logger.debug("POST will not complete, no parameters specified."); return null; } s_logger.debug("POST to server will be done with the following parameters: " + paramsStr); HttpURLConnection connection = null; String responseStr = null; try { connection = (HttpURLConnection) (new URL(urlStr)).openConnection(); connection.setRequestMethod(REQUEST_METHOD); connection.setDoOutput(true); DataOutputStream dos = new DataOutputStream(connection.getOutputStream()); dos.write(paramsStr.getBytes()); dos.flush(); dos.close(); InputStream is = connection.getInputStream(); BufferedReader rd = new BufferedReader(new InputStreamReader(is)); String line; StringBuffer response = new StringBuffer(); while ((line = rd.readLine()) != null) { response.append(line); response.append('\r'); } rd.close(); responseStr = response.toString(); } catch (ProtocolException e) { s_logger.debug("ProtocolException caught. Unable to execute POST."); } catch (MalformedURLException e) { s_logger.debug("MalformedURLException caught. Unexpected. Url is: " + urlStr); } catch (IOException e) { s_logger.debug("IOException caught. Unable to execute POST."); } return responseStr; } | 17,389 |
1 | private static String getDigest(String srcStr, String alg) { Assert.notNull(srcStr); Assert.notNull(alg); try { MessageDigest alga = MessageDigest.getInstance(alg); alga.update(srcStr.getBytes()); byte[] digesta = alga.digest(); return byte2hex(digesta); } catch (Exception e) { throw new RuntimeException(e); } } | @Test public void testRegister() { try { String username = "muchu"; String password = "123"; MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(password.getBytes()); String passwordMd5 = new String(md5.digest()); LogService logServiceMock = EasyMock.createMock(LogService.class); DbService dbServiceMock = EasyMock.createMock(DbService.class); userServ.setDbServ(dbServiceMock); userServ.setLogger(logServiceMock); IFeelerUser user = new FeelerUserImpl(); user.setUsername(username); user.setPassword(passwordMd5); logServiceMock.info(DbUserServiceImpl.class, ">>>rigister " + username + "<<<"); EasyMock.expect(dbServiceMock.queryFeelerUser(username)).andReturn(null); dbServiceMock.addFeelerUser(username, passwordMd5); logServiceMock.info(DbUserServiceImpl.class, ">>>identification " + username + "<<<"); EasyMock.expect(dbServiceMock.queryFeelerUser(username)).andReturn(user); EasyMock.replay(dbServiceMock, logServiceMock); Assert.assertTrue(userServ.register(username, password)); EasyMock.verify(dbServiceMock, logServiceMock); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } } | 17,390 |
0 | private void setInlineXML(Entry entry, DatastreamXMLMetadata ds) throws UnsupportedEncodingException, StreamIOException { String content; if (m_obj.hasContentModel(Models.SERVICE_DEPLOYMENT_3_0) && (ds.DatastreamID.equals("SERVICE-PROFILE") || ds.DatastreamID.equals("WSDL"))) { content = DOTranslationUtility.normalizeInlineXML(new String(ds.xmlContent, m_encoding), m_transContext); } else { content = new String(ds.xmlContent, m_encoding); } if (m_format.equals(ATOM_ZIP1_1)) { String name = ds.DSVersionID + ".xml"; try { m_zout.putNextEntry(new ZipEntry(name)); InputStream is = new ByteArrayInputStream(content.getBytes(m_encoding)); IOUtils.copy(is, m_zout); m_zout.closeEntry(); is.close(); } catch (IOException e) { throw new StreamIOException(e.getMessage(), e); } IRI iri = new IRI(name); entry.setSummary(ds.DSVersionID); entry.setContent(iri, ds.DSMIME); } else { entry.setContent(content, ds.DSMIME); } } | public static byte[] getHashedPassword(String password, byte[] randomBytes) { byte[] hashedPassword = null; try { MessageDigest messageDigest = MessageDigest.getInstance("MD5"); messageDigest.update(randomBytes); messageDigest.update(password.getBytes("UTF-8")); hashedPassword = messageDigest.digest(); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } catch (UnsupportedEncodingException e) { e.printStackTrace(); } return hashedPassword; } | 17,391 |
1 | public static void test(String args[]) { int trace; int bytes_read = 0; int last_contentLenght = 0; try { BufferedReader reader; URL url; url = new URL(args[0]); URLConnection istream = url.openConnection(); last_contentLenght = istream.getContentLength(); reader = new BufferedReader(new InputStreamReader(istream.getInputStream())); System.out.println(url.toString()); String line; trace = t2pNewTrace(); while ((line = reader.readLine()) != null) { bytes_read = bytes_read + line.length() + 1; t2pProcessLine(trace, line); } t2pHandleEventPairs(trace); t2pSort(trace, 0); t2pExportTrace(trace, new String("pngtest2.png"), 1000, 700, (float) 0, (float) 33); t2pExportTrace(trace, new String("pngtest3.png"), 1000, 700, (float) 2.3, (float) 2.44); System.out.println("Press any key to contiune read from stream !!!"); System.out.println(t2pGetProcessName(trace, 0)); System.in.read(); istream = url.openConnection(); if (last_contentLenght != istream.getContentLength()) { istream = url.openConnection(); istream.setRequestProperty("Range", "bytes=" + Integer.toString(bytes_read) + "-"); System.out.println(Integer.toString(istream.getContentLength())); reader = new BufferedReader(new InputStreamReader(istream.getInputStream())); while ((line = reader.readLine()) != null) { System.out.println(line); t2pProcessLine(trace, line); } } else System.out.println("File not changed !"); t2pDeleteTrace(trace); } catch (MalformedURLException e) { System.out.println("MalformedURLException !!!"); } catch (IOException e) { System.out.println("File not found " + args[0]); } ; } | public static String getTextFromUrl(final String url) throws IOException { final String lineSeparator = System.getProperty("line.separator"); InputStreamReader inputStreamReader = null; BufferedReader bufferedReader = null; try { final StringBuilder result = new StringBuilder(); inputStreamReader = new InputStreamReader(new URL(url).openStream()); bufferedReader = new BufferedReader(inputStreamReader); String line; while ((line = bufferedReader.readLine()) != null) { result.append(line).append(lineSeparator); } return result.toString(); } finally { InputOutputUtil.close(bufferedReader, inputStreamReader); } } | 17,392 |
0 | public static String extractIconPath(String siteURL) throws IOException { siteURL = siteURL.trim(); if (!siteURL.startsWith("http://")) { siteURL = "http://" + siteURL; } URL url = new URL(siteURL); BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream())); String iconURL = null; String iconPath = null; String inputLine; while ((inputLine = in.readLine()) != null) { if (inputLine.contains("type=\"image/x-icon\"") || inputLine.toLowerCase().contains("rel=\"shortcut icon\"")) { String tmp = new String(inputLine); String[] smallLines = inputLine.replace(">", ">\n").split("\n"); for (String smallLine : smallLines) { if (smallLine.contains("type=\"image/x-icon\"") || smallLine.toLowerCase().contains("rel=\"shortcut icon\"")) { tmp = smallLine; break; } } iconURL = tmp.replaceAll("^.*href=\"", ""); iconURL = iconURL.replaceAll("\".*", ""); tmp = null; String originalSiteURL = new String(siteURL); siteURL = getHome(siteURL); if (iconURL.charAt(0) == '/') { if (siteURL.charAt(siteURL.length() - 1) == '/') { iconURL = siteURL + iconURL.substring(1); } else { iconURL = siteURL + iconURL; } } else if (!iconURL.startsWith("http://")) { if (siteURL.charAt(siteURL.length() - 1) == '/') { iconURL = siteURL + iconURL; } else { iconURL = siteURL + "/" + iconURL; } } siteURL = originalSiteURL; break; } if (inputLine.contains("</head>".toLowerCase())) { break; } } in.close(); siteURL = getHome(siteURL); if (iconURL == null || "".equals(iconURL.trim())) { iconURL = "favicon.ico"; if (siteURL.charAt(siteURL.length() - 1) == '/') { iconURL = siteURL + iconURL; } else { iconURL = siteURL + "/" + iconURL; } } try { String iconFileName = siteURL; if (iconFileName.startsWith("http://")) { iconFileName = iconFileName.substring(7); } iconFileName = iconFileName.replaceAll("\\W", " ").trim().replace(" ", "_").concat(".ico"); iconPath = JReader.getConfig().getShortcutIconsDir() + File.separator + iconFileName; InputStream inIcon = new URL(iconURL).openStream(); OutputStream outIcon = new FileOutputStream(iconPath); byte[] buf = new byte[1024]; int len; while ((len = inIcon.read(buf)) > 0) { outIcon.write(buf, 0, len); } inIcon.close(); outIcon.close(); } catch (Exception e) { } return iconPath; } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 17,393 |
0 | public String getNextObjectId() throws SQLException { long nextserial = 1; String s0 = "lock table serials in exclusive mode"; String s1 = "SELECT nextserial FROM serials WHERE tablename = 'SERVER_OIDS'"; String s2; try { Statement stmt = dbconnect.connection.createStatement(); stmt.executeUpdate(s0); ResultSet rs = stmt.executeQuery(s1); if (!rs.next()) { s2 = "insert into serials (tablename,nextserial) values ('SERVER_OIDS', " + (nextserial) + ")"; } else { nextserial = rs.getLong(1) + 1; s2 = "update serials set nextserial=" + (nextserial) + " where tablename='SERVER_OIDS'"; } stmt.executeUpdate(s2); dbconnect.connection.commit(); rs.close(); stmt.close(); return "" + nextserial; } catch (SQLException e) { dbconnect.connection.rollback(); throw e; } } | private String getStreamUrl(String adress) throws MalformedURLException, IOException, ParserConfigurationException, SAXException { URL url = new URL(adress); InputStream is = url.openStream(); DocumentBuilder builder = DocumentBuilderFactory.newInstance().newDocumentBuilder(); org.w3c.dom.Document doc = builder.parse(is); Node linkTag = doc.getElementsByTagName(LINK_TAG_NAME).item(0); String StreamUrl = linkTag.getAttributes().getNamedItem(LINK_ATTR_NAME).getNodeValue(); return StreamUrl; } | 17,394 |
0 | public static String MD5(String text) { try { MessageDigest md; md = MessageDigest.getInstance("MD5"); byte[] md5hash = new byte[32]; md.update(text.getBytes("iso-8859-1"), 0, text.length()); md5hash = md.digest(); return convertToHex(md5hash); } catch (Exception e) { System.out.println(e.toString()); } return null; } | public boolean loadURL(URL url) { try { _properties.load(url.openStream()); Argo.log.info("Configuration loaded from " + url + "\n"); return true; } catch (Exception e) { if (_canComplain) Argo.log.warn("Unable to load configuration " + url + "\n"); _canComplain = false; return false; } } | 17,395 |
1 | private void copyPhoto(final IPhoto photo, final Map.Entry<String, Integer> size) { final File fileIn = new File(storageService.getPhotoPath(photo, storageService.getOriginalDir())); final File fileOut = new File(storageService.getPhotoPath(photo, size.getKey())); InputStream fileInputStream; OutputStream fileOutputStream; try { fileInputStream = new FileInputStream(fileIn); fileOutputStream = new FileOutputStream(fileOut); IOUtils.copy(fileInputStream, fileOutputStream); fileInputStream.close(); fileOutputStream.close(); } catch (final IOException e) { log.error("file io exception", e); return; } } | public static void copy(File srcFile, File destFile) throws IOException { FileInputStream in = null; FileOutputStream out = null; try { in = new FileInputStream(srcFile); out = new FileOutputStream(destFile); final byte[] buf = new byte[4096]; int read; while ((read = in.read(buf)) >= 0) { out.write(buf, 0, read); } } finally { try { if (in != null) in.close(); } catch (IOException ioe) { } try { if (out != null) out.close(); } catch (IOException ioe) { } } } | 17,396 |
0 | private void gzip(FileHolder fileHolder) { byte[] buffer = new byte[BUFFER_SIZE]; int bytes_read; if (fileHolder.selectedFileList.size() == 0) { return; } File destFile = new File(fileHolder.destFiles[0]); try { OutputStream outStream = new FileOutputStream(destFile); outStream = new GZIPOutputStream(outStream); File selectedFile = fileHolder.selectedFileList.get(0); super.currentObjBeingProcessed = selectedFile; this.inStream = new FileInputStream(selectedFile); while ((bytes_read = this.inStream.read(buffer)) != -1) { outStream.write(buffer, 0, bytes_read); } outStream.close(); this.inStream.close(); } catch (IOException e) { errEntry.setThrowable(e); errEntry.setAppContext("gzip()"); errEntry.setAppMessage("Error gzip'ing: " + destFile); logger.logError(errEntry); } } | public static String toMD5Sum(String arg0) { String ret; try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(arg0.getBytes()); ret = toHexString(md.digest()); } catch (Exception e) { ret = arg0; } return ret; } | 17,397 |
1 | public static void main(String[] args) { String str = "vbnjm7pexhlmof3kapi_key76bbc056cf516a844af25a763b2b8426auth_tokenff8080812374bd3f0123b60363a5230acomment_text你frob118edb4cb78b439207c2329b76395f9fmethodyupoo.photos.comments.addphoto_idff80808123922c950123b6066c946a3f"; MessageDigest md = null; String s = new String("你"); try { md = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); throw new RuntimeException(e.getMessage()); } md.reset(); try { md.update(str.getBytes("UTF-8")); System.out.println(new BigInteger(1, md.digest()).toString(16)); System.out.println(new BigInteger(1, s.getBytes("UTF-8")).toString(16)); } catch (UnsupportedEncodingException e) { e.printStackTrace(); } } | static String getMD5Sum(String source) { try { MessageDigest digest = MessageDigest.getInstance("MD5"); digest.update(source.getBytes()); byte[] md5sum = digest.digest(); BigInteger bigInt = new BigInteger(1, md5sum); return bigInt.toString(16); } catch (NoSuchAlgorithmException e) { throw new IllegalStateException("MD5 algorithm seems to not be supported. This is a requirement!"); } } | 17,398 |
1 | public void excluirCliente(String cpf) { PreparedStatement pstmt = null; String sql = "delete from cliente where cpf = ?"; try { pstmt = connection.prepareStatement(sql); pstmt.setString(1, cpf); pstmt.executeUpdate(); connection.commit(); } catch (SQLException ex) { try { connection.rollback(); } catch (SQLException ex1) { throw new RuntimeException("Erro ao exclir ciente.", ex1); } throw new RuntimeException("Erro ao excluir cliente.", ex); } finally { try { if (pstmt != null) { pstmt.close(); } } catch (SQLException ex) { throw new RuntimeException("Ocorreu um erro no banco de dados.", ex); } } } | private void updateIngredients(Recipe recipe, int id) throws Exception { PreparedStatement pst1 = null; PreparedStatement pst2 = null; try { conn = getConnection(); pst1 = conn.prepareStatement("DELETE FROM ingredients WHERE recipe_id = ?"); pst1.setInt(1, id); if (pst1.executeUpdate() >= 0) { pst2 = conn.prepareStatement("INSERT INTO ingredients (recipe_id, name, amount, measure_id, shop_flag) VALUES (?,?,?,?,?)"); IngredientContainer ings = recipe.getIngredients(); Ingredient ingBean = null; Iterator it; for (it = ings.getIngredients().iterator(); it.hasNext(); ) { ingBean = (Ingredient) it.next(); pst2.setInt(1, id); pst2.setString(2, ingBean.getName()); pst2.setDouble(3, ingBean.getAmount()); pst2.setInt(4, ingBean.getType()); pst2.setInt(5, ingBean.getShopFlag()); pst2.executeUpdate(); } } conn.commit(); } catch (Exception e) { conn.rollback(); MainFrame.appendStatusText("Can't add ingredient, the exception was " + e.getMessage()); } finally { try { if (pst1 != null) pst1.close(); pst1 = null; if (pst2 != null) pst2.close(); pst2 = null; } catch (Exception ex) { MainFrame.appendStatusText("Can't close database connection."); } } } | 17,399 |
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