label int64 0 1 | func1 stringlengths 173 53.1k | func2 stringlengths 173 53.1k | id int64 0 901k |
|---|---|---|---|
1 | private void copyResourceToDir(String ondexDir, String resource) { InputStream inputStream = OndexGraphImpl.class.getClassLoader().getResourceAsStream(resource); try { FileWriter fileWriter = new FileWriter(new File(ondexDir, resource)); IOUtils.copy(inputStream, fileWriter); fileWriter.flush(); fileWriter.close(); } catch (IOException e) { logger.error("Unable to copy '" + resource + "' file to " + ondexDir + "'"); } } | public static void translateTableMetaData(String baseDir, String tableName, NameSpaceDefinition nsDefinition) throws Exception { setVosiNS(baseDir, "table", nsDefinition); String filename = baseDir + "table.xsl"; Scanner s = new Scanner(new File(filename)); PrintWriter fw = new PrintWriter(new File(baseDir + tableName + ".xsl")); while (s.hasNextLine()) { fw.println(s.nextLine().replaceAll("TABLENAME", tableName)); } s.close(); fw.close(); applyStyle(baseDir + "tables.xml", baseDir + tableName + ".json", baseDir + tableName + ".xsl"); } | 17,500 |
0 | public static String md5hash(String input) { try { MessageDigest sha1Digest = MessageDigest.getInstance("MD5"); sha1Digest.update(input.getBytes()); return byteArrayToString(sha1Digest.digest()); } catch (Exception e) { logger.error(e.getMessage(), e); } return ""; } | @Override public int deleteStatement(String sql) { Statement statement = null; try { statement = getConnection().createStatement(); int result = statement.executeUpdate(sql.toString()); if (result == 0) log.warn(sql + " result row count is 0"); getConnection().commit(); return result; } catch (SQLException e) { try { getConnection().rollback(); } catch (SQLException e1) { log.error(e1.getMessage(), e1); } log.error(e.getMessage(), e); throw new RuntimeException(); } finally { try { statement.close(); getConnection().close(); } catch (SQLException e) { log.error(e.getMessage(), e); } } } | 17,501 |
1 | static String encodeEmailAsUserId(String email) { try { MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(email.toLowerCase().getBytes()); StringBuilder builder = new StringBuilder(); builder.append("1"); for (byte b : md5.digest()) { builder.append(String.format("%02d", new Object[] { Integer.valueOf(b & 0xFF) })); } return builder.toString().substring(0, 20); } catch (NoSuchAlgorithmException ex) { } return ""; } | public static String getHash(String password, String salt) throws NoSuchAlgorithmException, UnsupportedEncodingException { logger.debug("Entering getHash with password = " + password + "\n and salt = " + salt); MessageDigest digest = MessageDigest.getInstance("SHA-512"); digest.reset(); digest.update(salt.getBytes()); byte[] input = digest.digest(password.getBytes("UTF-8")); String hashResult = String.valueOf(input); logger.debug("Exiting getHash with hasResult of " + hashResult); return hashResult; } | 17,502 |
1 | public ContourGenerator(URL url, float modelMean, float modelStddev) throws IOException { this.modelMean = modelMean; this.modelStddev = modelStddev; List termsList = new ArrayList(); String line; BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); line = reader.readLine(); while (line != null) { if (!line.startsWith("***")) { parseAndAdd(termsList, line); } line = reader.readLine(); } terms = (F0ModelTerm[]) termsList.toArray(terms); reader.close(); } | public String getMethod(String url) { logger.info("Facebook: @executing facebookGetMethod():" + url); String responseStr = null; try { HttpGet loginGet = new HttpGet(url); loginGet.addHeader("Accept-Encoding", "gzip"); HttpResponse response = httpClient.execute(loginGet); HttpEntity entity = response.getEntity(); logger.trace("Facebook: facebookGetMethod: " + response.getStatusLine()); if (entity != null) { InputStream in = response.getEntity().getContent(); if (response.getEntity().getContentEncoding().getValue().equals("gzip")) { in = new GZIPInputStream(in); } StringBuffer sb = new StringBuffer(); byte[] b = new byte[4096]; int n; while ((n = in.read(b)) != -1) { sb.append(new String(b, 0, n)); } responseStr = sb.toString(); in.close(); entity.consumeContent(); } int statusCode = response.getStatusLine().getStatusCode(); if (statusCode != 200) { logger.warn("Facebook: Error Occured! Status Code = " + statusCode); responseStr = null; } logger.info("Facebook: Get Method done(" + statusCode + "), response string length: " + (responseStr == null ? 0 : responseStr.length())); } catch (IOException e) { logger.warn("Facebook: ", e); } return responseStr; } | 17,503 |
0 | public static void main(String[] args) { boolean rotateLeft = false; boolean rotateRight = false; boolean exclude = false; boolean reset = false; float quality = 0f; int thumbArea = 12000; for (int i = 0; i < args.length; i++) { if (args[i].equals("-rotl")) rotateLeft = true; else if (args[i].equals("-rotr")) rotateRight = true; else if (args[i].equals("-exclude")) exclude = true; else if (args[i].equals("-reset")) reset = true; else if (args[i].equals("-quality")) quality = Float.parseFloat(args[++i]); else if (args[i].equals("-area")) thumbArea = Integer.parseInt(args[++i]); else { File f = new File(args[i]); try { Tools t = new Tools(f); if (exclude) { URL url = t.getClass().getResource("exclude.jpg"); InputStream is = url.openStream(); File dest = t.getExcludeFile(); OutputStream os = new FileOutputStream(dest); byte[] buf = new byte[1024]; int len; while ((len = is.read(buf)) > 0) os.write(buf, 0, len); os.close(); is.close(); t.getOutFile().delete(); t.getThumbFile().delete(); System.exit(0); } if (reset) { t.getOutFile().delete(); t.getThumbFile().delete(); t.getExcludeFile().delete(); System.exit(0); } if (quality > 0) t.setQuality(quality); if (t.getType() == Tools.THUMB || t.getType() == Tools.EXCLUDE) t.load(t.getBaseFile()); else t.load(t.getSourceFile()); File out = t.getOutFile(); if (rotateLeft) t.rotateLeft(); else if (rotateRight) t.rotateRight(); t.save(out); t.getExcludeFile().delete(); t.getThumbFile().delete(); System.exit(0); } catch (Throwable e) { e.printStackTrace(); JOptionPane.showMessageDialog(null, "The operation could not be performed", "JPhotoAlbum", JOptionPane.ERROR_MESSAGE); System.exit(1); } } } } | public DataSet guessAtUnknowns(String filename) { TasselFileType guess = TasselFileType.Sequence; DataSet tds = null; try { BufferedReader br = null; if (filename.startsWith("http")) { URL url = new URL(filename); br = new BufferedReader(new InputStreamReader(url.openStream())); } else { br = new BufferedReader(new FileReader(filename)); } String line1 = br.readLine().trim(); String[] sval1 = line1.split("\\s"); String line2 = br.readLine().trim(); String[] sval2 = line2.split("\\s"); boolean lociMatchNumber = false; if (!sval1[0].startsWith("<") && (sval1.length == 2) && (line1.indexOf(':') < 0)) { int countLoci = Integer.parseInt(sval1[1]); if (countLoci == sval2.length) { lociMatchNumber = true; } } if (sval1[0].equalsIgnoreCase("<Annotated>")) { guess = TasselFileType.Annotated; } else if (line1.startsWith("<") || line1.startsWith("#")) { boolean isTrait = false; boolean isMarker = false; boolean isNumeric = false; boolean isMap = false; Pattern tagPattern = Pattern.compile("[<>\\s]+"); String[] info1 = tagPattern.split(line1); String[] info2 = tagPattern.split(line2); if (info1.length > 1) { if (info1[1].toUpperCase().startsWith("MARKER")) { isMarker = true; } else if (info1[1].toUpperCase().startsWith("TRAIT")) { isTrait = true; } else if (info1[1].toUpperCase().startsWith("NUMER")) { isNumeric = true; } else if (info1[1].toUpperCase().startsWith("MAP")) { isMap = true; } } if (info2.length > 1) { if (info2[1].toUpperCase().startsWith("MARKER")) { isMarker = true; } else if (info2[1].toUpperCase().startsWith("TRAIT")) { isTrait = true; } else if (info2[1].toUpperCase().startsWith("NUMER")) { isNumeric = true; } else if (info2[1].toUpperCase().startsWith("MAP")) { isMap = true; } } else { guess = null; String inline = br.readLine(); while (guess == null && inline != null && (inline.startsWith("#") || inline.startsWith("<"))) { if (inline.startsWith("<")) { String[] info = tagPattern.split(inline); if (info[1].toUpperCase().startsWith("MARKER")) { isMarker = true; } else if (info[1].toUpperCase().startsWith("TRAIT")) { isTrait = true; } else if (info[1].toUpperCase().startsWith("NUMER")) { isNumeric = true; } else if (info[1].toUpperCase().startsWith("MAP")) { isMap = true; } } } } if (isTrait || (isMarker && isNumeric)) { guess = TasselFileType.Phenotype; } else if (isMarker) { guess = TasselFileType.Polymorphism; } else if (isMap) { guess = TasselFileType.GeneticMap; } else { throw new IOException("Improperly formatted header. Data will not be imported."); } } else if ((line1.startsWith(">")) || (line1.startsWith(";"))) { guess = TasselFileType.Fasta; } else if (sval1.length == 1) { guess = TasselFileType.SqrMatrix; } else if (line1.indexOf(':') > 0) { guess = TasselFileType.Polymorphism; } else if ((sval1.length == 2) && (lociMatchNumber)) { guess = TasselFileType.Polymorphism; } else if ((line1.startsWith("#Nexus")) || (line1.startsWith("#NEXUS")) || (line1.startsWith("CLUSTAL")) || ((sval1.length == 2) && (sval2.length == 2))) { guess = TasselFileType.Sequence; } else if (sval1.length == 3) { guess = TasselFileType.Numerical; } myLogger.info("guessAtUnknowns: type: " + guess); tds = processDatum(filename, guess); br.close(); } catch (Exception e) { } return tds; } | 17,504 |
0 | public static void createBackup() { String workspacePath = Workspace.INSTANCE.getWorkspace(); if (workspacePath.length() == 0) return; workspacePath += "/"; String backupPath = workspacePath + "Backup"; File directory = new File(backupPath); if (!directory.exists()) directory.mkdirs(); String dateString = DataUtils.DateAndTimeOfNowAsLocalString(); dateString = dateString.replace(" ", "_"); dateString = dateString.replace(":", ""); backupPath += "/Backup_" + dateString + ".zip"; ArrayList<String> backupedFiles = new ArrayList<String>(); backupedFiles.add("Database/Database.properties"); backupedFiles.add("Database/Database.script"); FileInputStream in; byte[] data = new byte[1024]; int read = 0; try { ZipOutputStream zip = new ZipOutputStream(new FileOutputStream(backupPath)); zip.setMethod(ZipOutputStream.DEFLATED); for (int i = 0; i < backupedFiles.size(); i++) { String backupedFile = backupedFiles.get(i); try { File inFile = new File(workspacePath + backupedFile); if (inFile.exists()) { in = new FileInputStream(workspacePath + backupedFile); if (in != null) { ZipEntry entry = new ZipEntry(backupedFile); zip.putNextEntry(entry); while ((read = in.read(data, 0, 1024)) != -1) zip.write(data, 0, read); zip.closeEntry(); in.close(); } } } catch (Exception e) { Logger.logError(e, "Error during file backup:" + backupedFile); } } zip.close(); } catch (IOException ex) { Logger.logError(ex, "Error during backup"); } } | public static String loadURLToString(String url, String EOL) throws FileNotFoundException, IOException { BufferedReader in = new BufferedReader(new InputStreamReader((new URL(url)).openStream())); String result = ""; String str; while ((str = in.readLine()) != null) { result += str + EOL; } in.close(); return result; } | 17,505 |
1 | public static void copyFile(File dst, File src, boolean append) throws FileNotFoundException, IOException { dst.createNewFile(); FileChannel in = new FileInputStream(src).getChannel(); FileChannel out = new FileOutputStream(dst).getChannel(); long startAt = 0; if (append) startAt = out.size(); in.transferTo(startAt, in.size(), out); out.close(); in.close(); } | private String copyTutorial() throws IOException { File inputFile = new File(getFilenameForOriginalTutorial()); File outputFile = new File(getFilenameForCopiedTutorial()); FileReader in = new FileReader(inputFile); FileWriter out = new FileWriter(outputFile); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); return getFilenameForCopiedTutorial(); } | 17,506 |
1 | public static void main(String[] args) throws Exception { if (args.length < 2) { System.err.println("Usage: java SOAPClient4XG " + "http://soapURL soapEnvelopefile.xml" + " [SOAPAction]"); System.err.println("SOAPAction is optional."); System.exit(1); } String SOAPUrl = args[0]; String xmlFile2Send = args[1]; String SOAPAction = ""; if (args.length > 2) SOAPAction = args[2]; URL url = new URL(SOAPUrl); URLConnection connection = url.openConnection(); HttpURLConnection httpConn = (HttpURLConnection) connection; FileInputStream fin = new FileInputStream(xmlFile2Send); ByteArrayOutputStream bout = new ByteArrayOutputStream(); copy(fin, bout); fin.close(); byte[] b = bout.toByteArray(); httpConn.setRequestProperty("Content-Length", String.valueOf(b.length)); httpConn.setRequestProperty("Content-Type", "text/xml; charset=utf-8"); httpConn.setRequestProperty("SOAPAction", SOAPAction); httpConn.setRequestMethod("POST"); httpConn.setDoOutput(true); httpConn.setDoInput(true); OutputStream out = httpConn.getOutputStream(); out.write(b); out.close(); InputStreamReader isr = new InputStreamReader(httpConn.getInputStream()); BufferedReader in = new BufferedReader(isr); String inputLine; while ((inputLine = in.readLine()) != null) System.out.println(inputLine); in.close(); } | @Override public void exec() { BufferedReader in = null; try { URL url = new URL(getUrl()); in = new BufferedReader(new InputStreamReader(url.openStream())); StringBuffer result = new StringBuffer(); String str; while ((str = in.readLine()) != null) { result.append(str); } logger.info("received message: " + result); } catch (Exception e) { logger.error("HttpGetEvent could not execute", e); } finally { if (in != null) { try { in.close(); } catch (IOException e) { logger.error("BufferedReader could not be closed", e); } } } } | 17,507 |
1 | public static void copyFile(File sourceFile, File targetFile) throws IOException { if (sourceFile == null || targetFile == null) { throw new NullPointerException("Source file and target file must not be null"); } File directory = targetFile.getParentFile(); if (!directory.exists() && !directory.mkdirs()) { throw new IOException("Could not create directory '" + directory + "'"); } InputStream inputStream = null; OutputStream outputStream = null; try { inputStream = new BufferedInputStream(new FileInputStream(sourceFile)); outputStream = new BufferedOutputStream(new FileOutputStream(targetFile)); try { byte[] buffer = new byte[32768]; for (int readBytes = inputStream.read(buffer); readBytes > 0; readBytes = inputStream.read(buffer)) { outputStream.write(buffer, 0, readBytes); } } catch (IOException ex) { targetFile.delete(); throw ex; } } finally { if (inputStream != null) { try { inputStream.close(); } catch (IOException ex) { } } if (outputStream != null) { try { outputStream.close(); } catch (IOException ex) { } } } } | private void forcedCopy(File sourceFile, File destFile) throws IOException { if (!destFile.exists()) { destFile.createNewFile(); } FileChannel source = null; FileChannel destination = null; try { source = new FileInputStream(sourceFile).getChannel(); destination = new FileOutputStream(destFile).getChannel(); destination.transferFrom(source, 0, source.size()); } finally { if (source != null) { source.close(); } if (destination != null) { destination.close(); } } } | 17,508 |
1 | public static String getPasswordHash(String password) { MessageDigest md; try { md = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { throw new IllegalArgumentException(e); } md.update(password.getBytes()); byte[] digest = md.digest(); BigInteger i = new BigInteger(1, digest); String hash = i.toString(16); while (hash.length() < 32) { hash = "0" + hash; } return hash; } | public void createVendorSignature() { byte b; try { _vendorMessageDigest = MessageDigest.getInstance("MD5"); _vendorSig = Signature.getInstance("MD5/RSA/PKCS#1"); _vendorSig.initSign((PrivateKey) _vendorPrivateKey); _vendorMessageDigest.update(getBankString().getBytes()); _vendorMessageDigestBytes = _vendorMessageDigest.digest(); _vendorSig.update(_vendorMessageDigestBytes); _vendorSignatureBytes = _vendorSig.sign(); } catch (Exception e) { } ; } | 17,509 |
0 | protected synchronized Class<?> loadClass(String name, boolean resolve) throws ClassNotFoundException { if (name.startsWith("java.")) { return super.loadClass(name, resolve); } Class<?> c = super.findLoadedClass(name); if (c != null) { return c; } String resource = name.replace('.', '/') + ".class"; try { URL url = super.getResource(resource); if (url == null) { throw new ClassNotFoundException(name); } File f = new File("build/bin/" + resource); System.out.println("FileLen:" + f.length() + " " + f.getName()); InputStream is = url.openStream(); try { ByteArrayOutputStream os = new ByteArrayOutputStream(); byte[] b = new byte[2048]; int count; while ((count = is.read(b, 0, 2048)) != -1) { os.write(b, 0, count); } byte[] bytes = os.toByteArray(); System.err.println("bytes: " + bytes.length + " " + resource); return defineClass(name, bytes, 0, bytes.length); } finally { if (is != null) { is.close(); } } } catch (SecurityException e) { return super.loadClass(name, resolve); } catch (IOException e) { throw new ClassNotFoundException(name, e); } } | private void storeFieldMap(WorkingContent c, Connection conn) throws SQLException { SQLDialect dialect = getDatabase().getSQLDialect(); if (TRANSACTIONS_ENABLED) { conn.setAutoCommit(false); } try { Object thisKey = c.getPrimaryKey(); deleteFieldContent(thisKey, conn); PreparedStatement ps = null; StructureItem nextItem; Map fieldMap = c.getFieldMap(); String type; Object value, siKey; for (Iterator i = c.getStructure().getStructureItems().iterator(); i.hasNext(); ) { nextItem = (StructureItem) i.next(); type = nextItem.getDataType().toUpperCase(); siKey = nextItem.getPrimaryKey(); value = fieldMap.get(nextItem.getName()); try { if (type.equals(StructureItem.DATE)) { ps = conn.prepareStatement(sqlConstants.get("INSERT_DATE_FIELD")); ps.setObject(1, thisKey); ps.setObject(2, siKey); dialect.setDate(ps, 3, (Date) value); ps.executeUpdate(); } else if (type.equals(StructureItem.INT) || type.equals(StructureItem.FLOAT) || type.equals(StructureItem.VARCHAR)) { ps = conn.prepareStatement(sqlConstants.get("INSERT_" + type + "_FIELD")); ps.setObject(1, thisKey); ps.setObject(2, siKey); if (value != null) { ps.setObject(3, value); } else { int sqlType = Types.INTEGER; if (type.equals(StructureItem.FLOAT)) { sqlType = Types.FLOAT; } else if (type.equals(StructureItem.VARCHAR)) { sqlType = Types.VARCHAR; } ps.setNull(3, sqlType); } ps.executeUpdate(); } else if (type.equals(StructureItem.TEXT)) { setTextField(c, siKey, (String) value, conn); } if (ps != null) { ps.close(); ps = null; } } finally { if (ps != null) ps.close(); } } if (TRANSACTIONS_ENABLED) { conn.commit(); } } catch (SQLException e) { if (TRANSACTIONS_ENABLED) { conn.rollback(); } throw e; } finally { if (TRANSACTIONS_ENABLED) { conn.setAutoCommit(true); } } } | 17,510 |
1 | public static void unzip(String destDir, String zipPath) { PrintWriter stdout = new PrintWriter(System.out, true); int read = 0; byte[] data = new byte[1024]; ZipEntry entry; try { ZipInputStream in = new ZipInputStream(new FileInputStream(zipPath)); stdout.println(zipPath); while ((entry = in.getNextEntry()) != null) { if (entry.getMethod() == ZipEntry.DEFLATED) { stdout.println(" Inflating: " + entry.getName()); } else { stdout.println(" Extracting: " + entry.getName()); } FileOutputStream out = new FileOutputStream(destDir + File.separator + entry.getName()); while ((read = in.read(data, 0, 1024)) != -1) { out.write(data, 0, read); } out.close(); } in.close(); stdout.println(); } catch (Exception e) { e.printStackTrace(); } } | void shutdown(final boolean unexpected) { if (unexpected) { log.warn("S H U T D O W N --- received unexpected shutdown request."); } else { log.info("S H U T D O W N --- start regular shutdown."); } if (this.uncaughtException != null) { log.warn("Shutdown probably caused by the following Exception.", this.uncaughtException); } log.error("check if we need the controler listener infrastructure"); if (this.dumpDataAtEnd) { new PopulationWriter(this.population, this.network).write(this.controlerIO.getOutputFilename(FILENAME_POPULATION)); new NetworkWriter(this.network).write(this.controlerIO.getOutputFilename(FILENAME_NETWORK)); new ConfigWriter(this.config).write(this.controlerIO.getOutputFilename(FILENAME_CONFIG)); if (!unexpected && this.getConfig().vspExperimental().isWritingOutputEvents()) { File toFile = new File(this.controlerIO.getOutputFilename("output_events.xml.gz")); File fromFile = new File(this.controlerIO.getIterationFilename(this.getLastIteration(), "events.xml.gz")); IOUtils.copyFile(fromFile, toFile); } } if (unexpected) { log.info("S H U T D O W N --- unexpected shutdown request completed."); } else { log.info("S H U T D O W N --- regular shutdown completed."); } try { Runtime.getRuntime().removeShutdownHook(this.shutdownHook); } catch (IllegalStateException e) { log.info("Cannot remove shutdown hook. " + e.getMessage()); } this.shutdownHook = null; this.collectLogMessagesAppender = null; IOUtils.closeOutputDirLogging(); } | 17,511 |
1 | private String hash(String message) { MessageDigest md = null; try { md = MessageDigest.getInstance("SHA1"); } catch (NoSuchAlgorithmException e) { throw new AssertionError("Can't find the SHA1 algorithm in the java.security package"); } String saltString = String.valueOf(12345); md.update(saltString.getBytes()); md.update(message.getBytes()); byte[] digestBytes = md.digest(); StringBuffer digestSB = new StringBuffer(); for (int i = 0; i < digestBytes.length; i++) { int lowNibble = digestBytes[i] & 0x0f; int highNibble = (digestBytes[i] >> 4) & 0x0f; digestSB.append(Integer.toHexString(highNibble)); digestSB.append(Integer.toHexString(lowNibble)); } String digestStr = digestSB.toString().trim(); return digestStr; } | public static String getMD5(String... list) { if (list.length == 0) return null; MessageDigest md; try { md = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { throw new RuntimeException(e); } md.reset(); for (String in : list) md.update(in.getBytes()); byte[] digest = md.digest(); StringBuilder hexString = new StringBuilder(); for (int i = 0; i < digest.length; ++i) { String hex = Integer.toHexString(0xFF & digest[i]); if (hex.length() == 1) hexString.append('0'); hexString.append(hex); } return hexString.toString(); } | 17,512 |
0 | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | public void sortIndexes() { int i, j, count; int t; count = m_ItemIndexes.length; for (i = 1; i < count; i++) { for (j = 0; j < count - i; j++) { if (m_ItemIndexes[j] > m_ItemIndexes[j + 1]) { t = m_ItemIndexes[j]; m_ItemIndexes[j] = m_ItemIndexes[j + 1]; m_ItemIndexes[j + 1] = t; } } } } | 17,513 |
0 | public static final void main(String[] args) throws Exception { HttpClient httpclient = new DefaultHttpClient(); HttpGet httpget = new HttpGet("http://www.apache.org/"); System.out.println("executing request " + httpget.getURI()); HttpResponse response = httpclient.execute(httpget); System.out.println("----------------------------------------"); System.out.println(response.getStatusLine()); System.out.println("----------------------------------------"); HttpEntity entity = response.getEntity(); if (entity != null) { BufferedReader reader = new BufferedReader(new InputStreamReader(entity.getContent())); try { System.out.println(reader.readLine()); } catch (IOException ex) { throw ex; } catch (RuntimeException ex) { httpget.abort(); throw ex; } finally { reader.close(); } } } | @Override protected String doInBackground(String... params) { HttpURLConnection conn = null; String localFilePath = params[0]; if (localFilePath == null) { return null; } try { URL url = new URL(ConnectionHandler.getServerURL() + ":" + ConnectionHandler.getServerPort() + "/"); conn = (HttpURLConnection) url.openConnection(); conn.setDoInput(true); conn.setDoOutput(true); conn.setUseCaches(false); conn.setRequestMethod("POST"); conn.addRequestProperty("Content-Type", "multipart/form-data; boundary=" + boundary); DataOutputStream dos = new DataOutputStream(conn.getOutputStream()); DataInputStream fileReader = new DataInputStream(new FileInputStream(localFilePath)); dos.write(toByte(twoHyphens + boundary + lineEnd)); dos.write(toByte("Content-Disposition: form-data; name=\"uploadfile\"; filename=\"redpinfile\"" + lineEnd)); dos.write(toByte("Content-Type: application/octet-stream" + lineEnd)); dos.write(toByte("Content-Length: " + fileReader.available() + lineEnd)); dos.write(toByte(lineEnd)); byte[] buffer = new byte[1024]; int bytesRead; while ((bytesRead = fileReader.read(buffer)) != -1) { dos.write(buffer, 0, bytesRead); } dos.write(toByte(lineEnd)); dos.write(toByte(twoHyphens + boundary + twoHyphens + lineEnd)); dos.flush(); dos.close(); if (conn.getResponseCode() == HttpURLConnection.HTTP_OK) { InputStream is = conn.getInputStream(); int ch; StringBuffer b = new StringBuffer(); while ((ch = is.read()) != -1) { b.append((char) ch); } return b.toString(); } } catch (MalformedURLException ex) { Log.w(TAG, "error: " + ex.getMessage(), ex); } catch (IOException ioe) { Log.w(TAG, "error: " + ioe.getMessage(), ioe); } finally { if (conn != null) { conn.disconnect(); } } return null; } | 17,514 |
1 | public void handleMessage(Message message) throws Fault { InputStream is = message.getContent(InputStream.class); if (is == null) { return; } CachedOutputStream bos = new CachedOutputStream(); try { IOUtils.copy(is, bos); is.close(); bos.close(); sendMsg("Inbound Message \n" + "--------------" + bos.getOut().toString() + "\n--------------"); message.setContent(InputStream.class, bos.getInputStream()); } catch (IOException e) { throw new Fault(e); } } | private File writeResourceToFile(String resource) throws IOException { File tmp = File.createTempFile("zfppt" + resource, null); InputStream res = Thread.currentThread().getContextClassLoader().getResourceAsStream(resource); OutputStream out = new FileOutputStream(tmp); IOUtils.copy(res, out); out.close(); return tmp; } | 17,515 |
0 | public static void writeToFile(final File file, final InputStream in) throws IOException { IOUtils.createFile(file); FileOutputStream fos = null; try { fos = new FileOutputStream(file); IOUtils.copyStream(in, fos); } finally { IOUtils.closeIO(fos); } } | public byte[] encryptMsg(String encryptString) { byte[] encryptByte = null; try { MessageDigest messageDigest = MessageDigest.getInstance("MD5"); messageDigest.update(encryptString.getBytes()); encryptByte = messageDigest.digest(); } catch (NoSuchAlgorithmException ex) { ex.printStackTrace(); } return encryptByte; } | 17,516 |
0 | public void run() { try { File outDir = new File(outDirTextField.getText()); if (!outDir.exists()) { SwingUtilities.invokeLater(new Runnable() { public void run() { JOptionPane.showMessageDialog(UnpackWizard.this, "The chosen directory does not exist!", "Directory Not Found Error", JOptionPane.ERROR_MESSAGE); } }); return; } if (!outDir.isDirectory()) { SwingUtilities.invokeLater(new Runnable() { public void run() { JOptionPane.showMessageDialog(UnpackWizard.this, "The chosen file is not a directory!", "Not a Directory Error", JOptionPane.ERROR_MESSAGE); } }); return; } if (!outDir.canWrite()) { SwingUtilities.invokeLater(new Runnable() { public void run() { JOptionPane.showMessageDialog(UnpackWizard.this, "Cannot write to the chosen directory!", "Directory Not Writeable Error", JOptionPane.ERROR_MESSAGE); } }); return; } File archiveDir = new File("foo.bar").getAbsoluteFile().getParentFile(); URL baseUrl = UnpackWizard.class.getClassLoader().getResource(UnpackWizard.class.getName().replaceAll("\\.", "/") + ".class"); if (baseUrl.getProtocol().equals("jar")) { String jarPath = baseUrl.getPath(); jarPath = jarPath.substring(0, jarPath.indexOf('!')); if (jarPath.startsWith("file:")) { try { archiveDir = new File(new URI(jarPath)).getAbsoluteFile().getParentFile(); } catch (URISyntaxException e1) { e1.printStackTrace(System.err); } } } SortedMap<Integer, String> inputFileNames = new TreeMap<Integer, String>(); for (Entry<Object, Object> anEntry : indexProperties.entrySet()) { String key = anEntry.getKey().toString(); if (key.startsWith("archive file ")) { inputFileNames.put(Integer.parseInt(key.substring("archive file ".length())), anEntry.getValue().toString()); } } byte[] buff = new byte[64 * 1024]; try { long bytesToWrite = 0; long bytesReported = 0; long bytesWritten = 0; for (String aFileName : inputFileNames.values()) { File aFile = new File(archiveDir, aFileName); if (aFile.exists()) { if (aFile.isFile()) { bytesToWrite += aFile.length(); } else { final File wrongFile = aFile; SwingUtilities.invokeLater(new Runnable() { public void run() { JOptionPane.showMessageDialog(UnpackWizard.this, "File \"" + wrongFile.getAbsolutePath() + "\" is not a standard file!", "Non Standard File Error", JOptionPane.ERROR_MESSAGE); } }); return; } } else { final File wrongFile = aFile; SwingUtilities.invokeLater(new Runnable() { public void run() { JOptionPane.showMessageDialog(UnpackWizard.this, "File \"" + wrongFile.getAbsolutePath() + "\" does not exist!", "File Not Found Error", JOptionPane.ERROR_MESSAGE); } }); return; } } MultiFileInputStream mfis = new MultiFileInputStream(archiveDir, inputFileNames.values().toArray(new String[inputFileNames.size()])); TarArchiveInputStream tis = new TarArchiveInputStream(new BufferedInputStream(mfis)); TarArchiveEntry tarEntry = tis.getNextTarEntry(); while (tarEntry != null) { File outFile = new File(outDir.getAbsolutePath() + "/" + tarEntry.getName()); if (outFile.exists()) { final File wrongFile = outFile; SwingUtilities.invokeLater(new Runnable() { public void run() { JOptionPane.showMessageDialog(UnpackWizard.this, "Was about to write out file \"" + wrongFile.getAbsolutePath() + "\" but it already " + "exists.\nPlease [re]move existing files out of the way " + "and try again.", "File Not Found Error", JOptionPane.ERROR_MESSAGE); } }); return; } if (tarEntry.isDirectory()) { outFile.getAbsoluteFile().mkdirs(); } else { outFile.getAbsoluteFile().getParentFile().mkdirs(); OutputStream os = new BufferedOutputStream(new FileOutputStream(outFile)); int len = tis.read(buff, 0, buff.length); while (len != -1) { os.write(buff, 0, len); bytesWritten += len; if (bytesWritten - bytesReported > (10 * 1024 * 1024)) { bytesReported = bytesWritten; final int progress = (int) (bytesReported * 100 / bytesToWrite); SwingUtilities.invokeLater(new Runnable() { @Override public void run() { progressBar.setValue(progress); } }); } len = tis.read(buff, 0, buff.length); } os.close(); } tarEntry = tis.getNextTarEntry(); } long expectedCrc = 0; try { expectedCrc = Long.parseLong(indexProperties.getProperty("CRC32", "0")); } catch (NumberFormatException e) { System.err.println("Error while obtaining the expected CRC"); e.printStackTrace(System.err); } if (mfis.getCRC() == expectedCrc) { SwingUtilities.invokeLater(new Runnable() { @Override public void run() { progressBar.setValue(0); JOptionPane.showMessageDialog(UnpackWizard.this, "Extraction completed successfully!", "Done!", JOptionPane.INFORMATION_MESSAGE); } }); return; } else { System.err.println("CRC Error: was expecting " + expectedCrc + " but got " + mfis.getCRC()); SwingUtilities.invokeLater(new Runnable() { public void run() { progressBar.setValue(0); JOptionPane.showMessageDialog(UnpackWizard.this, "CRC Error: the data extracted does not have the expected CRC!\n" + "You should probably delete the extracted files, as they are " + "likely to be invalid.", "CRC Error", JOptionPane.ERROR_MESSAGE); } }); return; } } catch (final IOException e) { e.printStackTrace(System.err); SwingUtilities.invokeLater(new Runnable() { public void run() { progressBar.setValue(0); JOptionPane.showMessageDialog(UnpackWizard.this, "Input/Output Error: " + e.getLocalizedMessage(), "Input/Output Error", JOptionPane.ERROR_MESSAGE); } }); return; } } finally { SwingUtilities.invokeLater(new Runnable() { public void run() { progressBar.setValue(0); setEnabled(true); } }); } } | public String loadGeneratorXML() { FTPClient ftp = new FTPClient(); try { int reply; ftp.connect(this.getFolienKonvertierungsServer().getUrl()); System.out.println("Connected to " + this.getFolienKonvertierungsServer().getUrl() + "."); System.out.print(ftp.getReplyString()); reply = ftp.getReplyCode(); if (!FTPReply.isPositiveCompletion(reply)) { ftp.disconnect(); System.err.println("FTP server refused connection."); return null; } if (!ftp.login(this.getFolienKonvertierungsServer().getFtpBenutzer(), this.getFolienKonvertierungsServer().getFtpPasswort())) { System.err.println("FTP server: Login incorrect"); } String path; if (this.getFolienKonvertierungsServer().getDefaultPath().length() > 0) { path = "/" + this.getFolienKonvertierungsServer().getDefaultPath() + "/" + this.getId() + "/"; } else { path = "/" + this.getId() + "/"; } if (!ftp.changeWorkingDirectory(path)) System.err.println("Konnte Verzeichnis nicht wechseln: " + path); System.err.println("Arbeitsverzeichnis: " + ftp.printWorkingDirectory()); ftp.setFileType(FTP.BINARY_FILE_TYPE); ftp.enterLocalPassiveMode(); InputStream inStream = ftp.retrieveFileStream("generator.xml"); if (inStream == null) { System.err.println("Job " + this.getId() + ": Datei generator.xml wurde nicht gefunden"); return null; } BufferedReader in = new BufferedReader(new InputStreamReader(inStream)); generatorXML = ""; String zeile = ""; while ((zeile = in.readLine()) != null) { generatorXML += zeile + "\n"; } in.close(); ftp.logout(); ftp.disconnect(); } catch (IOException e) { System.err.println("Job " + this.getId() + ": Datei generator.xml konnte nicht vom Webserver kopiert werden."); e.printStackTrace(); } catch (Exception e) { System.err.println("Job " + this.getId() + ": Datei generator.xml konnte nicht vom Webserver kopiert werden."); e.printStackTrace(); } finally { if (ftp.isConnected()) { try { ftp.disconnect(); } catch (IOException ioe) { } } } if (generatorXML != null && generatorXML.length() == 0) { generatorXML = null; } return generatorXML; } | 17,517 |
1 | public void copy(String pathFileIn, String pathFileOut) { try { File inputFile = new File(pathFileIn); File outputFile = new File(pathFileOut); FileReader in = new FileReader(inputFile); File outDir = new File(DirOut); if (!outDir.exists()) outDir.mkdirs(); FileWriter out = new FileWriter(outputFile); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); this.printColumn(inputFile.getName(), outputFile.getPath()); } catch (Exception e) { e.printStackTrace(); } } | public void writeOutput(String directory) throws IOException { File f = new File(directory); int i = 0; if (f.isDirectory()) { for (AppInventorScreen screen : screens.values()) { File screenFile = new File(getScreenFilePath(f.getAbsolutePath(), screen)); screenFile.getParentFile().mkdirs(); screenFile.createNewFile(); FileWriter out = new FileWriter(screenFile); String initial = files.get(i).toString(); Map<String, String> types = screen.getTypes(); String[] lines = initial.split("\n"); for (String key : types.keySet()) { if (!key.trim().equals(screen.getName().trim())) { String value = types.get(key); boolean varFound = false; boolean importFound = false; for (String line : lines) { if (line.matches("^\\s*(public|private)\\s+" + value + "\\s+" + key + "\\s*=.*;$")) varFound = true; if (line.matches("^\\s*(public|private)\\s+" + value + "\\s+" + key + "\\s*;$")) varFound = true; if (line.matches("^\\s*import\\s+.*" + value + "\\s*;$")) importFound = true; } if (!varFound) initial = initial.replaceFirst("(?s)(?<=\\{\n)", "\tprivate " + value + " " + key + ";\n"); if (!importFound) initial = initial.replaceFirst("(?=import)", "import com.google.devtools.simple.runtime.components.android." + value + ";\n"); } } out.write(initial); out.close(); i++; } File manifestFile = new File(getManifestFilePath(f.getAbsolutePath(), manifest)); manifestFile.getParentFile().mkdirs(); manifestFile.createNewFile(); FileWriter out = new FileWriter(manifestFile); out.write(manifest.toString()); out.close(); File projectFile = new File(getProjectFilePath(f.getAbsolutePath(), project)); projectFile.getParentFile().mkdirs(); projectFile.createNewFile(); out = new FileWriter(projectFile); out.write(project.toString()); out.close(); String[] copyResourceFilenames = { "proguard.cfg", "project.properties", "libSimpleAndroidRuntime.jar", "\\.classpath", "res/drawable/icon.png", "\\.settings/org.eclipse.jdt.core.prefs" }; for (String copyResourceFilename : copyResourceFilenames) { InputStream is = getClass().getResourceAsStream("/resources/" + copyResourceFilename.replace("\\.", "")); File outputFile = new File(f.getAbsoluteFile() + File.separator + copyResourceFilename.replace("\\.", ".")); outputFile.getParentFile().mkdirs(); OutputStream os = new FileOutputStream(outputFile); byte[] buf = new byte[1024]; int readBytes; if (is == null) System.out.println("/resources/" + copyResourceFilename.replace("\\.", "")); if (os == null) System.out.println(f.getAbsolutePath() + File.separator + copyResourceFilename.replace("\\.", ".")); while ((readBytes = is.read(buf)) > 0) { os.write(buf, 0, readBytes); } } for (String assetName : assets) { InputStream is = new FileInputStream(new File(assetsDir.getAbsolutePath() + File.separator + assetName)); File outputFile = new File(f.getAbsoluteFile() + File.separator + assetName); outputFile.getParentFile().mkdirs(); OutputStream os = new FileOutputStream(outputFile); byte[] buf = new byte[1024]; int readBytes; while ((readBytes = is.read(buf)) > 0) { os.write(buf, 0, readBytes); } } File assetsOutput = new File(getAssetsFilePath(f.getAbsolutePath())); new File(assetsDir.getAbsoluteFile() + File.separator + "assets").renameTo(assetsOutput); } } | 17,518 |
0 | public static Shader loadShader(String vspath, String fspath, int textureUnits, boolean separateCam, boolean fog) throws ShaderProgramProcessException { if (vspath == "" || fspath == "") return null; BufferedReader in; String vert = "", frag = ""; try { URL v_url = Graphics.class.getClass().getResource("/eu/cherrytree/paj/graphics/shaders/" + vspath); String v_path = AppDefinition.getDefaultDataPackagePath() + "/shaders/" + vspath; if (v_url != null) in = new BufferedReader(new InputStreamReader(v_url.openStream())); else in = new BufferedReader(new InputStreamReader(new FileReader(v_path).getInputStream())); boolean run = true; String str; while (run) { str = in.readLine(); if (str != null) vert += str + "\n"; else run = false; } in.close(); } catch (Exception e) { System.err.println("Couldn't read in vertex shader \"" + vspath + "\"."); throw new ShaderNotLoadedException(vspath, fspath); } try { URL f_url = Graphics.class.getClass().getResource("/eu/cherrytree/paj/graphics/shaders/" + fspath); String f_path = AppDefinition.getDefaultDataPackagePath() + "/shaders/" + fspath; if (f_url != null) in = new BufferedReader(new InputStreamReader(f_url.openStream())); else in = new BufferedReader(new InputStreamReader(new FileReader(f_path).getInputStream())); boolean run = true; String str; while (run) { str = in.readLine(); if (str != null) frag += str + "\n"; else run = false; } in.close(); } catch (Exception e) { System.err.println("Couldn't read in fragment shader \"" + fspath + "\"."); throw new ShaderNotLoadedException(vspath, fspath); } return loadShaderFromSource(vert, frag, textureUnits, separateCam, fog); } | public static void writeDataResourceText(GenericValue dataResource, String mimeTypeId, Locale locale, Map templateContext, GenericDelegator delegator, Writer out, boolean cache) throws IOException, GeneralException { Map context = (Map) templateContext.get("context"); if (context == null) { context = FastMap.newInstance(); } String webSiteId = (String) templateContext.get("webSiteId"); if (UtilValidate.isEmpty(webSiteId)) { if (context != null) webSiteId = (String) context.get("webSiteId"); } String https = (String) templateContext.get("https"); if (UtilValidate.isEmpty(https)) { if (context != null) https = (String) context.get("https"); } String dataResourceId = dataResource.getString("dataResourceId"); String dataResourceTypeId = dataResource.getString("dataResourceTypeId"); if (UtilValidate.isEmpty(dataResourceTypeId)) { dataResourceTypeId = "SHORT_TEXT"; } if ("SHORT_TEXT".equals(dataResourceTypeId) || "LINK".equals(dataResourceTypeId)) { String text = dataResource.getString("objectInfo"); writeText(dataResource, text, templateContext, mimeTypeId, locale, out); } else if ("ELECTRONIC_TEXT".equals(dataResourceTypeId)) { GenericValue electronicText; if (cache) { electronicText = delegator.findByPrimaryKeyCache("ElectronicText", UtilMisc.toMap("dataResourceId", dataResourceId)); } else { electronicText = delegator.findByPrimaryKey("ElectronicText", UtilMisc.toMap("dataResourceId", dataResourceId)); } String text = electronicText.getString("textData"); writeText(dataResource, text, templateContext, mimeTypeId, locale, out); } else if (dataResourceTypeId.endsWith("_OBJECT")) { String text = (String) dataResource.get("dataResourceId"); writeText(dataResource, text, templateContext, mimeTypeId, locale, out); } else if (dataResourceTypeId.equals("URL_RESOURCE")) { String text = null; URL url = FlexibleLocation.resolveLocation(dataResource.getString("objectInfo")); if (url.getHost() != null) { InputStream in = url.openStream(); int c; StringWriter sw = new StringWriter(); while ((c = in.read()) != -1) { sw.write(c); } sw.close(); text = sw.toString(); } else { String prefix = DataResourceWorker.buildRequestPrefix(delegator, locale, webSiteId, https); String sep = ""; if (url.toString().indexOf("/") != 0 && prefix.lastIndexOf("/") != (prefix.length() - 1)) { sep = "/"; } String fixedUrlStr = prefix + sep + url.toString(); URL fixedUrl = new URL(fixedUrlStr); text = (String) fixedUrl.getContent(); } out.write(text); } else if (dataResourceTypeId.endsWith("_FILE_BIN")) { writeText(dataResource, dataResourceId, templateContext, mimeTypeId, locale, out); } else if (dataResourceTypeId.endsWith("_FILE")) { String dataResourceMimeTypeId = dataResource.getString("mimeTypeId"); String objectInfo = dataResource.getString("objectInfo"); String rootDir = (String) context.get("rootDir"); if (dataResourceMimeTypeId == null || dataResourceMimeTypeId.startsWith("text")) { renderFile(dataResourceTypeId, objectInfo, rootDir, out); } else { writeText(dataResource, dataResourceId, templateContext, mimeTypeId, locale, out); } } else { throw new GeneralException("The dataResourceTypeId [" + dataResourceTypeId + "] is not supported in renderDataResourceAsText"); } } | 17,519 |
1 | public boolean isServerAlive(String pStrURL) { boolean isAlive; long t1 = System.currentTimeMillis(); try { URL url = new URL(pStrURL); BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream())); String inputLine; while ((inputLine = in.readLine()) != null) { logger.fine(inputLine); } logger.info("** Connection successful.. **"); in.close(); isAlive = true; } catch (Exception e) { logger.info("** Connection failed.. **"); e.printStackTrace(); isAlive = false; } long t2 = System.currentTimeMillis(); logger.info("Time taken to check connection: " + (t2 - t1) + " ms."); return isAlive; } | private String callPage(String urlStr) throws IOException { URL url = new URL(urlStr); BufferedReader reader = null; StringBuilder result = new StringBuilder(); try { reader = new BufferedReader(new InputStreamReader(url.openStream())); String line; while ((line = reader.readLine()) != null) { result.append(line); } } finally { if (reader != null) reader.close(); } return result.toString(); } | 17,520 |
0 | public synchronized void checkout() throws SQLException, InterruptedException { Connection con = this.session.open(); con.setAutoCommit(false); String sql_stmt = DB2SQLStatements.shopping_cart_getAll(this.customer_id); Statement stmt = con.createStatement(ResultSet.TYPE_SCROLL_INSENSITIVE, ResultSet.CONCUR_READ_ONLY); ResultSet res = stmt.executeQuery(sql_stmt); res.last(); int rowcount = res.getRow(); res.beforeFirst(); ShoppingCartItem[] resArray = new ShoppingCartItem[rowcount]; int i = 0; while (res.next()) { resArray[i] = new ShoppingCartItem(); resArray[i].setCustomer_id(res.getInt("customer_id")); resArray[i].setDate_start(res.getDate("date_start")); resArray[i].setDate_stop(res.getDate("date_stop")); resArray[i].setRoom_type_id(res.getInt("room_type_id")); resArray[i].setNumtaken(res.getInt("numtaken")); resArray[i].setTotal_price(res.getInt("total_price")); i++; } this.wait(4000); try { for (int j = 0; j < rowcount; j++) { sql_stmt = DB2SQLStatements.room_date_update(resArray[j]); stmt = con.createStatement(); stmt.executeUpdate(sql_stmt); } } catch (SQLException e) { e.printStackTrace(); con.rollback(); } for (int j = 0; j < rowcount; j++) { System.out.println(j); sql_stmt = DB2SQLStatements.booked_insert(resArray[j], 2); stmt = con.createStatement(); stmt.executeUpdate(sql_stmt); } sql_stmt = DB2SQLStatements.shopping_cart_deleteAll(this.customer_id); stmt = con.createStatement(); stmt.executeUpdate(sql_stmt); con.commit(); this.session.close(con); } | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 17,521 |
1 | private void makeDailyBackup() throws CacheOperationException, ConfigurationException { final int MAX_DAILY_BACKUPS = 5; File cacheFolder = getBackupFolder(); cacheLog.debug("Making a daily backup of current Beehive archive..."); try { File oldestDaily = new File(DAILY_BACKUP_PREFIX + "." + MAX_DAILY_BACKUPS); if (oldestDaily.exists()) { moveToWeeklyBackup(oldestDaily); } for (int index = MAX_DAILY_BACKUPS - 1; index > 0; index--) { File daily = new File(cacheFolder, DAILY_BACKUP_PREFIX + "." + index); File target = new File(cacheFolder, DAILY_BACKUP_PREFIX + "." + (index + 1)); if (!daily.exists()) { cacheLog.debug("Daily backup file ''{0}'' was not present. Skipping...", daily.getAbsolutePath()); continue; } if (!daily.renameTo(target)) { sortBackups(); throw new CacheOperationException("There was an error moving ''{0}'' to ''{1}''.", daily.getAbsolutePath(), target.getAbsolutePath()); } else { cacheLog.debug("Moved " + daily.getAbsolutePath() + " to " + target.getAbsolutePath()); } } } catch (SecurityException e) { throw new ConfigurationException("Security Manager has denied read/write access to daily backup files in ''{0}'' : {1}" + e, cacheFolder.getAbsolutePath(), e.getMessage()); } File beehiveArchive = getCachedArchive(); File tempBackupArchive = new File(cacheFolder, BEEHIVE_ARCHIVE_NAME + ".tmp"); BufferedInputStream archiveReader = null; BufferedOutputStream tempBackupWriter = null; try { archiveReader = new BufferedInputStream(new FileInputStream(beehiveArchive)); tempBackupWriter = new BufferedOutputStream(new FileOutputStream(tempBackupArchive)); int len, bytecount = 0; final int BUFFER_SIZE = 4096; byte[] buffer = new byte[BUFFER_SIZE]; while ((len = archiveReader.read(buffer, 0, BUFFER_SIZE)) != -1) { tempBackupWriter.write(buffer, 0, len); bytecount += len; } tempBackupWriter.flush(); long originalFileSize = beehiveArchive.length(); if (originalFileSize != bytecount) { throw new CacheOperationException("Original archive size was {0} bytes but only {1} were copied.", originalFileSize, bytecount); } cacheLog.debug("Finished copying ''{0}'' to ''{1}''.", beehiveArchive.getAbsolutePath(), tempBackupArchive.getAbsolutePath()); } catch (FileNotFoundException e) { throw new CacheOperationException("Files required for copying a backup of Beehive archive could not be found, opened " + "or created : {1}", e, e.getMessage()); } catch (IOException e) { throw new CacheOperationException("Error while making a copy of the Beehive archive : {0}", e, e.getMessage()); } finally { if (archiveReader != null) { try { archiveReader.close(); } catch (Throwable t) { cacheLog.warn("Failed to close stream to ''{0}'' : {1}", t, beehiveArchive.getAbsolutePath(), t.getMessage()); } } if (tempBackupWriter != null) { try { tempBackupWriter.close(); } catch (Throwable t) { cacheLog.warn("Failed to close stream to ''{0}'' : {1}", t, tempBackupArchive.getAbsolutePath(), t.getMessage()); } } } validateArchive(tempBackupArchive); File newestDaily = getNewestDailyBackupFile(); try { if (!tempBackupArchive.renameTo(newestDaily)) { throw new CacheOperationException("Error moving ''{0}'' to ''{1}''.", tempBackupArchive.getAbsolutePath(), newestDaily.getAbsolutePath()); } else { cacheLog.info("Backup complete. Saved in ''{0}''", newestDaily.getAbsolutePath()); } } catch (SecurityException e) { throw new ConfigurationException("Security Manager has denied write access to ''{0}'' : {1}", e, newestDaily.getAbsolutePath(), e.getMessage()); } } | private boolean performModuleInstallation(Model m) { String seldir = directoryHandler.getSelectedDirectory(); if (seldir == null) { MessageBox box = new MessageBox(shell, SWT.ICON_WARNING | SWT.OK); box.setText("Cannot install"); box.setMessage("A target directory must be selected."); box.open(); return false; } String sjar = pathText.getText(); File fjar = new File(sjar); if (!fjar.exists()) { MessageBox box = new MessageBox(shell, SWT.ICON_WARNING | SWT.OK); box.setText("Cannot install"); box.setMessage("A non-existing jar file has been selected."); box.open(); return false; } int count = 0; try { URLClassLoader loader = new URLClassLoader(new URL[] { fjar.toURI().toURL() }); JarInputStream jis = new JarInputStream(new FileInputStream(fjar)); JarEntry entry = jis.getNextJarEntry(); while (entry != null) { String name = entry.getName(); if (name.endsWith(".class")) { name = name.substring(0, name.length() - 6); name = name.replace('/', '.'); Class<?> cls = loader.loadClass(name); if (IAlgorithm.class.isAssignableFrom(cls) && !cls.isInterface() && (cls.getModifiers() & Modifier.ABSTRACT) == 0) { if (!testAlgorithm(cls, m)) return false; count++; } } entry = jis.getNextJarEntry(); } } catch (Exception e1) { Application.logexcept("Could not load classes from jar file.", e1); return false; } if (count == 0) { MessageBox box = new MessageBox(shell, SWT.ICON_WARNING | SWT.OK); box.setText("Cannot install"); box.setMessage("There don't seem to be any algorithms in the specified module."); box.open(); return false; } try { FileChannel ic = new FileInputStream(sjar).getChannel(); FileChannel oc = new FileOutputStream(seldir + File.separator + fjar.getName()).getChannel(); ic.transferTo(0, ic.size(), oc); ic.close(); oc.close(); } catch (Exception e) { Application.logexcept("Could not install module", e); return false; } result = new Object(); return true; } | 17,522 |
1 | private byte[] hash(String toHash) { try { MessageDigest md5 = MessageDigest.getInstance("MD5", "BC"); md5.update(toHash.getBytes("ISO-8859-1")); return md5.digest(); } catch (Exception ex) { ex.printStackTrace(); return null; } } | public static String MD5(String s) { try { MessageDigest m = MessageDigest.getInstance("MD5"); m.update(s.getBytes(), 0, s.length()); return new BigInteger(1, m.digest()).toString(16); } catch (NoSuchAlgorithmException ex) { return ""; } } | 17,523 |
1 | public void writeTo(OutputStream out) throws IOException { if (!closed) { throw new IOException("Stream not closed"); } if (isInMemory()) { memoryOutputStream.writeTo(out); } else { FileInputStream fis = new FileInputStream(outputFile); try { IOUtils.copy(fis, out); } finally { IOUtils.closeQuietly(fis); } } } | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 17,524 |
0 | public static void main(String[] args) throws IOException { long readfilelen = 0; BufferedRandomAccessFile brafReadFile, brafWriteFile; brafReadFile = new BufferedRandomAccessFile("C:\\WINNT\\Fonts\\STKAITI.TTF"); readfilelen = brafReadFile.initfilelen; brafWriteFile = new BufferedRandomAccessFile(".\\STKAITI.001", "rw", 10); byte buf[] = new byte[1024]; int readcount; long start = System.currentTimeMillis(); while ((readcount = brafReadFile.read(buf)) != -1) { brafWriteFile.write(buf, 0, readcount); } brafWriteFile.close(); brafReadFile.close(); System.out.println("BufferedRandomAccessFile Copy & Write File: " + brafReadFile.filename + " FileSize: " + java.lang.Integer.toString((int) readfilelen >> 1024) + " (KB) " + "Spend: " + (double) (System.currentTimeMillis() - start) / 1000 + "(s)"); java.io.FileInputStream fdin = new java.io.FileInputStream("C:\\WINNT\\Fonts\\STKAITI.TTF"); java.io.BufferedInputStream bis = new java.io.BufferedInputStream(fdin, 1024); java.io.DataInputStream dis = new java.io.DataInputStream(bis); java.io.FileOutputStream fdout = new java.io.FileOutputStream(".\\STKAITI.002"); java.io.BufferedOutputStream bos = new java.io.BufferedOutputStream(fdout, 1024); java.io.DataOutputStream dos = new java.io.DataOutputStream(bos); start = System.currentTimeMillis(); for (int i = 0; i < readfilelen; i++) { dos.write(dis.readByte()); } dos.close(); dis.close(); System.out.println("DataBufferedios Copy & Write File: " + brafReadFile.filename + " FileSize: " + java.lang.Integer.toString((int) readfilelen >> 1024) + " (KB) " + "Spend: " + (double) (System.currentTimeMillis() - start) / 1000 + "(s)"); } | public String elementsSearch() { int index = 0; for (int i1 = 0; i1 < 6; i1++) { for (int i2 = 0; i2 < 5; i2++) { if (index < 5) { if (initialMatrix[i1][i2] > 0) { finalMatrix[index] = initialMatrix[i1][i2]; index++; } } else break; } } int temp; for (int i = 0; i < finalMatrix.length; i++) { for (int j = 0; j < finalMatrix.length - 1; j++) { if (finalMatrix[j] < finalMatrix[j + 1]) { temp = finalMatrix[j]; finalMatrix[j] = finalMatrix[j + 1]; finalMatrix[j + 1] = temp; } } } String result = ""; for (int k : finalMatrix) result += k + " "; return result; } | 17,525 |
0 | public static void copy_file(String fromFileName, String toFileName) throws IOException { File fromFile = new File(fromFileName); File toFile = new File(toFileName); if (!fromFile.exists()) throw new IOException("FileCopy: " + "no such source file: " + fromFileName); if (!fromFile.isFile()) throw new IOException("FileCopy: " + "can't copy directory: " + fromFileName); if (!fromFile.canRead()) throw new IOException("FileCopy: " + "source file is unreadable: " + fromFileName); if (toFile.isDirectory()) toFile = new File(toFile, fromFile.getName()); if (toFile.exists()) { if (!toFile.canWrite()) throw new IOException("FileCopy: " + "destination file is unwriteable: " + toFileName); System.out.print("Overwrite existing file " + toFile.getName() + "? (Y/N): "); System.out.flush(); BufferedReader in = new BufferedReader(new InputStreamReader(System.in)); String response = in.readLine(); if (!response.equals("Y") && !response.equals("y")) throw new IOException("FileCopy: " + "existing file was not overwritten."); } else { String parent = toFile.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) throw new IOException("FileCopy: " + "destination directory doesn't exist: " + parent); if (dir.isFile()) throw new IOException("FileCopy: " + "destination is not a directory: " + parent); if (!dir.canWrite()) throw new IOException("FileCopy: " + "destination directory is unwriteable: " + parent); } FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(fromFile); to = new FileOutputStream(toFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead); } finally { if (from != null) try { from.close(); } catch (IOException e) { ; } if (to != null) try { to.close(); } catch (IOException e) { ; } } } | private File downloadURL(URL url) { MerlotDebug.msg("Downloading URL: " + url); String filename = url.getFile(); if (filename.indexOf('/') >= 0) { filename = filename.substring(filename.lastIndexOf('/') + 1); } File userPluginsDir = new File(XMLEditorSettings.USER_MERLOT_DIR, "plugins"); File cache = new File(userPluginsDir, filename); try { if (!userPluginsDir.exists()) { userPluginsDir.mkdirs(); } URLConnection connection = url.openConnection(); if (cache.exists() && cache.canRead()) { connection.connect(); long remoteTimestamp = connection.getLastModified(); if (remoteTimestamp == 0 || remoteTimestamp > cache.lastModified()) { cache = downloadContent(connection, cache); } else { MerlotDebug.msg("Using cached version for URL: " + url); } } else { cache = downloadContent(connection, cache); } } catch (IOException ex) { MerlotDebug.exception(ex); } if (cache != null && cache.exists()) { return cache; } else { return null; } } | 17,526 |
0 | public static String getMD5(final String text) { if (null == text) return null; final MessageDigest algorithm; try { algorithm = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { throw new RuntimeException(e); } algorithm.reset(); algorithm.update(text.getBytes()); final byte[] digest = algorithm.digest(); final StringBuffer hexString = new StringBuffer(); for (byte b : digest) { String str = Integer.toHexString(0xFF & b); str = str.length() == 1 ? '0' + str : str; hexString.append(str); } return hexString.toString(); } | public String saveFile(URL url) { String newUrlToReturn = url.toString(); try { String directory = Util.appendDirPath(targetDirectory, OBJ_REPOSITORY); String category = url.openConnection().getContentType(); category = category.substring(0, category.indexOf("/")); String fileUrl = Util.transformUrlToPath(url.toString()); directory = Util.appendDirPath(directory, category); directory = Util.appendDirPath(directory, fileUrl); String objectFileName = url.toString().substring(url.toString().lastIndexOf('/') + 1); BufferedInputStream in = new java.io.BufferedInputStream(url.openStream()); File dir = new File(directory); if (!dir.exists()) { dir.mkdirs(); } File file = new File(Util.appendDirPath(dir.getPath(), objectFileName)); FileOutputStream fos = new FileOutputStream(file); BufferedOutputStream bout = new BufferedOutputStream(fos, 1024); byte data[] = new byte[1024]; int count; while ((count = in.read(data, 0, 1024)) != -1) { bout.write(data, 0, count); } bout.close(); fos.close(); in.close(); newUrlToReturn = Util.getRelativePath(file.getAbsolutePath(), targetDirectory); } catch (IOException e) { return newUrlToReturn; } return newUrlToReturn; } | 17,527 |
1 | public static void copyFile(File sourceFile, File destFile, boolean overwrite) throws IOException, DirNotFoundException, FileNotFoundException, FileExistsAlreadyException { File destDir = new File(destFile.getParent()); if (!destDir.exists()) { throw new DirNotFoundException(destDir.getAbsolutePath()); } if (!sourceFile.exists()) { throw new FileNotFoundException(sourceFile.getAbsolutePath()); } if (!overwrite && destFile.exists()) { throw new FileExistsAlreadyException(destFile.getAbsolutePath()); } FileInputStream in = new FileInputStream(sourceFile); FileOutputStream out = new FileOutputStream(destFile); byte[] buffer = new byte[8 * 1024]; int count = 0; do { out.write(buffer, 0, count); count = in.read(buffer, 0, buffer.length); } while (count != -1); in.close(); out.close(); } | public static void invokeMvnArtifact(final IProject project, final IModuleExtension moduleExtension, final String location) throws CoreException, InterruptedException, IOException { final Properties properties = new Properties(); properties.put("archetypeGroupId", "org.nexopenframework.plugins"); properties.put("archetypeArtifactId", "openfrwk-archetype-webmodule"); final String version = org.maven.ide.eclipse.ext.Maven2Plugin.getArchetypeVersion(); properties.put("archetypeVersion", version); properties.put("artifactId", moduleExtension.getArtifact()); properties.put("groupId", moduleExtension.getGroup()); properties.put("version", moduleExtension.getVersion()); final ILaunchManager launchManager = DebugPlugin.getDefault().getLaunchManager(); final ILaunchConfigurationType launchConfigurationType = launchManager.getLaunchConfigurationType(LAUNCH_CONFIGURATION_TYPE_ID); final ILaunchConfigurationWorkingCopy workingCopy = launchConfigurationType.newInstance(null, "Creating WEB module using Apache Maven archetype"); File archetypePomDirectory = getDefaultArchetypePomDirectory(); try { final String dfPom = getPomFile(moduleExtension.getGroup(), moduleExtension.getArtifact()); final ByteArrayInputStream bais = new ByteArrayInputStream(dfPom.getBytes()); final File f = new File(archetypePomDirectory, "pom.xml"); OutputStream fous = null; try { fous = new FileOutputStream(f); IOUtils.copy(bais, fous); } finally { try { if (fous != null) { fous.close(); } if (bais != null) { bais.close(); } } catch (final IOException e) { } } String goalName = "archetype:create"; boolean offline = false; try { final Class clazz = Thread.currentThread().getContextClassLoader().loadClass("org.maven.ide.eclipse.Maven2Plugin"); final Maven2Plugin plugin = (Maven2Plugin) clazz.getMethod("getDefault", new Class[0]).invoke(null, new Object[0]); offline = plugin.getPreferenceStore().getBoolean("eclipse.m2.offline"); } catch (final ClassNotFoundException e) { Logger.logException("No class [org.maven.ide.eclipse.ext.Maven2Plugin] in classpath", e); } catch (final NoSuchMethodException e) { Logger.logException("No method getDefault", e); } catch (final Throwable e) { Logger.logException(e); } if (offline) { goalName = new StringBuffer(goalName).append(" -o").toString(); } if (!offline) { final IPreferenceStore ps = Maven2Plugin.getDefault().getPreferenceStore(); final String repositories = ps.getString(Maven2PreferenceConstants.P_M2_REPOSITORIES); final String[] repos = repositories.split(org.maven.ide.eclipse.ext.Maven2Plugin.REPO_SEPARATOR); final StringBuffer sbRepos = new StringBuffer(); for (int k = 0; k < repos.length; k++) { sbRepos.append(repos[k]); if (k != repos.length - 1) { sbRepos.append(","); } } properties.put("remoteRepositories", sbRepos.toString()); } workingCopy.setAttribute(ATTR_GOALS, goalName); workingCopy.setAttribute(ATTR_POM_DIR, archetypePomDirectory.getAbsolutePath()); workingCopy.setAttribute(ATTR_PROPERTIES, convertPropertiesToList(properties)); final long timeout = org.maven.ide.eclipse.ext.Maven2Plugin.getTimeout(); TimeoutLaunchConfiguration.launchWithTimeout(new NullProgressMonitor(), workingCopy, project, timeout); FileUtils.copyDirectoryStructure(new File(archetypePomDirectory, project.getName()), new File(location)); FileUtils.deleteDirectory(new File(location + "/src")); FileUtils.forceDelete(new File(location, "pom.xml")); project.refreshLocal(IResource.DEPTH_INFINITE, null); } finally { FileUtils.deleteDirectory(archetypePomDirectory); Logger.log(Logger.INFO, "Invoked removing of archetype POM directory"); } } | 17,528 |
1 | private static String deviceIdFromCombined_Device_ID(Context context) { StringBuilder builder = new StringBuilder(); builder.append(deviceIdFromIMEI(context)); builder.append(deviceIdFromPseudo_Unique_Id()); builder.append(deviceIdFromAndroidId(context)); builder.append(deviceIdFromWLAN_MAC_Address(context)); builder.append(deviceIdFromBT_MAC_Address(context)); String m_szLongID = builder.toString(); MessageDigest m = null; try { m = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } m.update(m_szLongID.getBytes(), 0, m_szLongID.length()); byte p_md5Data[] = m.digest(); String m_szUniqueID = new String(); for (int i = 0; i < p_md5Data.length; i++) { int b = (0xFF & p_md5Data[i]); if (b <= 0xF) m_szUniqueID += "0"; m_szUniqueID += Integer.toHexString(b); } return m_szUniqueID; } | public static String hashString(String sPassword) { if (sPassword == null || sPassword.equals("")) { return "empty:"; } else { try { MessageDigest md = MessageDigest.getInstance("SHA-1"); md.update(sPassword.getBytes("UTF-8")); byte[] res = md.digest(); return "sha1:" + byte2hex(res); } catch (NoSuchAlgorithmException e) { return "plain:" + sPassword; } catch (UnsupportedEncodingException e) { return "plain:" + sPassword; } } } | 17,529 |
0 | public IUserProfile getUserProfile(String profileID) throws MM4UUserProfileNotFoundException { SimpleUserProfile tempProfile = null; String tempProfileString = this.profileURI + profileID + FILE_SUFFIX; try { URL url = new URL(tempProfileString); Debug.println("Retrieve profile with ID: " + url); tempProfile = new SimpleUserProfile(); BufferedReader input = new BufferedReader(new InputStreamReader(url.openStream())); String tempLine = null; tempProfile.add("id", profileID); while ((tempLine = input.readLine()) != null) { Property tempProperty = PropertyList.splitStringIntoKeyAndValue(tempLine); if (tempProperty != null) { tempProfile.addIfNotNull(tempProperty.getKey(), tempProperty.getValue()); } } input.close(); } catch (MalformedURLException exception) { throw new MM4UUserProfileNotFoundException(this, "getProfile", "Profile '" + tempProfileString + "' not found."); } catch (IOException exception) { throw new MM4UUserProfileNotFoundException(this, "getProfile", "Profile '" + tempProfileString + "' not found."); } return tempProfile; } | public static BufferedImage readDicom(final URL url, final SourceImage src) { assert url != null; assert src != null; BufferedImage bi = null; try { DicomInputStream dis = new DicomInputStream(new BufferedInputStream(url.openStream())); src.read(dis); dis.close(); bi = src.getBufferedImage(); } catch (Exception exc) { System.out.println("ImageFactory::readDicom(): exc=" + exc); } return bi; } | 17,530 |
1 | private final long test(final boolean applyFilter, final int executionCount) throws NoSuchAlgorithmException, NoSuchPaddingException, FileNotFoundException, IOException, RuleLoadingException { final boolean stripHtmlEnabled = true; final boolean injectSecretTokensEnabled = true; final boolean encryptQueryStringsEnabled = true; final boolean protectParamsAndFormsEnabled = true; final boolean applyExtraProtectionForDisabledFormFields = true; final boolean applyExtraProtectionForReadonlyFormFields = false; final boolean applyExtraProtectionForRequestParamValueCount = false; final ContentInjectionHelper helper = new ContentInjectionHelper(); final RuleFileLoader ruleFileLoaderModificationExcludes = new ClasspathZipRuleFileLoader(); ruleFileLoaderModificationExcludes.setPath(RuleParameter.MODIFICATION_EXCLUDES_DEFAULT.getValue()); final ContentModificationExcludeDefinitionContainer containerModExcludes = new ContentModificationExcludeDefinitionContainer(ruleFileLoaderModificationExcludes); containerModExcludes.parseDefinitions(); helper.setContentModificationExcludeDefinitions(containerModExcludes); final AttackHandler attackHandler = new AttackHandler(null, 123, 600000, 100000, 300000, 300000, null, "MOCK", false, false, 0, false, false, Pattern.compile("sjghggfakgfjagfgajgfjasgfs"), Pattern.compile("sjghggfakgfjagfgajgfjasgfs"), true, new AttackMailHandler()); final SessionCreationTracker sessionCreationTracker = new SessionCreationTracker(attackHandler, 0, 600000, 300000, 0, "", "", "", ""); final RequestWrapper request = new RequestWrapper(new RequestMock(), helper, sessionCreationTracker, "123.456.789.000", false, true, true); final RuleFileLoader ruleFileLoaderResponseModifications = new ClasspathZipRuleFileLoader(); ruleFileLoaderResponseModifications.setPath(RuleParameter.RESPONSE_MODIFICATIONS_DEFAULT.getValue()); final ResponseModificationDefinitionContainer container = new ResponseModificationDefinitionContainer(ruleFileLoaderResponseModifications); container.parseDefinitions(); final ResponseModificationDefinition[] responseModificationDefinitions = downCast(container.getAllEnabledRequestDefinitions()); final List<Pattern> tmpPatternsToExcludeCompleteTag = new ArrayList<Pattern>(responseModificationDefinitions.length); final List<Pattern> tmpPatternsToExcludeCompleteScript = new ArrayList<Pattern>(responseModificationDefinitions.length); final List<Pattern> tmpPatternsToExcludeLinksWithinScripts = new ArrayList<Pattern>(responseModificationDefinitions.length); final List<Pattern> tmpPatternsToExcludeLinksWithinTags = new ArrayList<Pattern>(responseModificationDefinitions.length); final List<Pattern> tmpPatternsToCaptureLinksWithinScripts = new ArrayList<Pattern>(responseModificationDefinitions.length); final List<Pattern> tmpPatternsToCaptureLinksWithinTags = new ArrayList<Pattern>(responseModificationDefinitions.length); final List<WordDictionary> tmpPrefiltersToExcludeCompleteTag = new ArrayList<WordDictionary>(responseModificationDefinitions.length); final List<WordDictionary> tmpPrefiltersToExcludeCompleteScript = new ArrayList<WordDictionary>(responseModificationDefinitions.length); final List<WordDictionary> tmpPrefiltersToExcludeLinksWithinScripts = new ArrayList<WordDictionary>(responseModificationDefinitions.length); final List<WordDictionary> tmpPrefiltersToExcludeLinksWithinTags = new ArrayList<WordDictionary>(responseModificationDefinitions.length); final List<WordDictionary> tmpPrefiltersToCaptureLinksWithinScripts = new ArrayList<WordDictionary>(responseModificationDefinitions.length); final List<WordDictionary> tmpPrefiltersToCaptureLinksWithinTags = new ArrayList<WordDictionary>(responseModificationDefinitions.length); final List<Integer[]> tmpGroupNumbersToCaptureLinksWithinScripts = new ArrayList<Integer[]>(responseModificationDefinitions.length); final List<Integer[]> tmpGroupNumbersToCaptureLinksWithinTags = new ArrayList<Integer[]>(responseModificationDefinitions.length); for (int i = 0; i < responseModificationDefinitions.length; i++) { final ResponseModificationDefinition responseModificationDefinition = responseModificationDefinitions[i]; if (responseModificationDefinition.isMatchesScripts()) { tmpPatternsToExcludeCompleteScript.add(responseModificationDefinition.getScriptExclusionPattern()); tmpPrefiltersToExcludeCompleteScript.add(responseModificationDefinition.getScriptExclusionPrefilter()); tmpPatternsToExcludeLinksWithinScripts.add(responseModificationDefinition.getUrlExclusionPattern()); tmpPrefiltersToExcludeLinksWithinScripts.add(responseModificationDefinition.getUrlExclusionPrefilter()); tmpPatternsToCaptureLinksWithinScripts.add(responseModificationDefinition.getUrlCapturingPattern()); tmpPrefiltersToCaptureLinksWithinScripts.add(responseModificationDefinition.getUrlCapturingPrefilter()); tmpGroupNumbersToCaptureLinksWithinScripts.add(ServerUtils.convertSimpleToObjectArray(responseModificationDefinition.getCapturingGroupNumbers())); } if (responseModificationDefinition.isMatchesTags()) { tmpPatternsToExcludeCompleteTag.add(responseModificationDefinition.getTagExclusionPattern()); tmpPrefiltersToExcludeCompleteTag.add(responseModificationDefinition.getTagExclusionPrefilter()); tmpPatternsToExcludeLinksWithinTags.add(responseModificationDefinition.getUrlExclusionPattern()); tmpPrefiltersToExcludeLinksWithinTags.add(responseModificationDefinition.getUrlExclusionPrefilter()); tmpPatternsToCaptureLinksWithinTags.add(responseModificationDefinition.getUrlCapturingPattern()); tmpPrefiltersToCaptureLinksWithinTags.add(responseModificationDefinition.getUrlCapturingPrefilter()); tmpGroupNumbersToCaptureLinksWithinTags.add(ServerUtils.convertSimpleToObjectArray(responseModificationDefinition.getCapturingGroupNumbers())); } } final Matcher[] matchersToExcludeCompleteTag = ServerUtils.convertListOfPatternToArrayOfMatcher(tmpPatternsToExcludeCompleteTag); final Matcher[] matchersToExcludeCompleteScript = ServerUtils.convertListOfPatternToArrayOfMatcher(tmpPatternsToExcludeCompleteScript); final Matcher[] matchersToExcludeLinksWithinScripts = ServerUtils.convertListOfPatternToArrayOfMatcher(tmpPatternsToExcludeLinksWithinScripts); final Matcher[] matchersToExcludeLinksWithinTags = ServerUtils.convertListOfPatternToArrayOfMatcher(tmpPatternsToExcludeLinksWithinTags); final Matcher[] matchersToCaptureLinksWithinScripts = ServerUtils.convertListOfPatternToArrayOfMatcher(tmpPatternsToCaptureLinksWithinScripts); final Matcher[] matchersToCaptureLinksWithinTags = ServerUtils.convertListOfPatternToArrayOfMatcher(tmpPatternsToCaptureLinksWithinTags); final WordDictionary[] prefiltersToExcludeCompleteTag = (WordDictionary[]) tmpPrefiltersToExcludeCompleteTag.toArray(new WordDictionary[0]); final WordDictionary[] prefiltersToExcludeCompleteScript = (WordDictionary[]) tmpPrefiltersToExcludeCompleteScript.toArray(new WordDictionary[0]); final WordDictionary[] prefiltersToExcludeLinksWithinScripts = (WordDictionary[]) tmpPrefiltersToExcludeLinksWithinScripts.toArray(new WordDictionary[0]); final WordDictionary[] prefiltersToExcludeLinksWithinTags = (WordDictionary[]) tmpPrefiltersToExcludeLinksWithinTags.toArray(new WordDictionary[0]); final WordDictionary[] prefiltersToCaptureLinksWithinScripts = (WordDictionary[]) tmpPrefiltersToCaptureLinksWithinScripts.toArray(new WordDictionary[0]); final WordDictionary[] prefiltersToCaptureLinksWithinTags = (WordDictionary[]) tmpPrefiltersToCaptureLinksWithinTags.toArray(new WordDictionary[0]); final int[][] groupNumbersToCaptureLinksWithinScripts = ServerUtils.convertArrayIntegerListTo2DimIntArray(tmpGroupNumbersToCaptureLinksWithinScripts); final int[][] groupNumbersToCaptureLinksWithinTags = ServerUtils.convertArrayIntegerListTo2DimIntArray(tmpGroupNumbersToCaptureLinksWithinTags); final Cipher cipher = CryptoUtils.getCipher(); final CryptoKeyAndSalt key = CryptoUtils.generateRandomCryptoKeyAndSalt(false); Cipher.getInstance("AES"); MessageDigest.getInstance("SHA-1"); final ResponseWrapper response = new ResponseWrapper(new ResponseMock(), request, attackHandler, helper, false, "___ENCRYPTED___", cipher, key, "___SEC-KEY___", "___SEC-VALUE___", "___PROT-KEY___", false, false, false, false, "123.456.789.000", new HashSet(), prefiltersToExcludeCompleteScript, matchersToExcludeCompleteScript, prefiltersToExcludeCompleteTag, matchersToExcludeCompleteTag, prefiltersToExcludeLinksWithinScripts, matchersToExcludeLinksWithinScripts, prefiltersToExcludeLinksWithinTags, matchersToExcludeLinksWithinTags, prefiltersToCaptureLinksWithinScripts, matchersToCaptureLinksWithinScripts, prefiltersToCaptureLinksWithinTags, matchersToCaptureLinksWithinTags, groupNumbersToCaptureLinksWithinScripts, groupNumbersToCaptureLinksWithinTags, true, false, true, true, true, true, true, true, true, true, true, false, false, true, "", "", (short) 3, true, false, false); final List durations = new ArrayList(); for (int i = 0; i < executionCount; i++) { final long start = System.currentTimeMillis(); Reader reader = null; Writer writer = null; try { reader = new BufferedReader(new FileReader(this.htmlFile)); writer = new FileWriter(this.outputFile); if (applyFilter) { writer = new ResponseFilterWriter(writer, true, "http://127.0.0.1/test/sample", "/test", "/test", "___SEC-KEY___", "___SEC-VALUE___", "___PROT-KEY___", cipher, key, helper, "___ENCRYPTED___", request, response, stripHtmlEnabled, injectSecretTokensEnabled, protectParamsAndFormsEnabled, encryptQueryStringsEnabled, applyExtraProtectionForDisabledFormFields, applyExtraProtectionForReadonlyFormFields, applyExtraProtectionForRequestParamValueCount, prefiltersToExcludeCompleteScript, matchersToExcludeCompleteScript, prefiltersToExcludeCompleteTag, matchersToExcludeCompleteTag, prefiltersToExcludeLinksWithinScripts, matchersToExcludeLinksWithinScripts, prefiltersToExcludeLinksWithinTags, matchersToExcludeLinksWithinTags, prefiltersToCaptureLinksWithinScripts, matchersToCaptureLinksWithinScripts, prefiltersToCaptureLinksWithinTags, matchersToCaptureLinksWithinTags, groupNumbersToCaptureLinksWithinScripts, groupNumbersToCaptureLinksWithinTags, true, true, false, true, true, true, true, true, true, true, true, false, false, true, "", "", (short) 3, true, false); writer = new BufferedWriter(writer); } char[] chars = new char[16 * 1024]; int read; while ((read = reader.read(chars)) != -1) { if (read > 0) { writer.write(chars, 0, read); } } durations.add(new Long(System.currentTimeMillis() - start)); } finally { if (reader != null) { try { reader.close(); } catch (IOException ignored) { } } if (writer != null) { try { writer.close(); } catch (IOException ignored) { } } } } long sum = 0; for (final Iterator iter = durations.iterator(); iter.hasNext(); ) { Long value = (Long) iter.next(); sum += value.longValue(); } return sum / durations.size(); } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 17,531 |
0 | protected int doExecuteInsert(PreparedStatement statement, Table data) throws SQLException { ResultSet rs = null; int result = -1; try { lastError = null; result = statement.executeUpdate(); if (!isAutoCommit()) connection.commit(); rs = statement.getGeneratedKeys(); while (rs.next()) { FieldUtils.setValue(data, data.key, rs.getObject(1)); } } catch (SQLException ex) { if (!isAutoCommit()) { lastError = ex; connection.rollback(); LogUtils.log(Level.SEVERE, "Transaction is being rollback. Error: " + ex.toString()); } else { throw ex; } } finally { if (statement != null) statement.close(); if (rs != null) rs.close(); } return result; } | public synchronized String getEncryptedPassword(String plaintext, String algorithm) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md = null; try { md = MessageDigest.getInstance(algorithm); md.update(plaintext.getBytes("UTF-8")); } catch (NoSuchAlgorithmException nsae) { throw nsae; } catch (UnsupportedEncodingException uee) { throw uee; } return (new BigInteger(1, md.digest())).toString(16); } | 17,532 |
0 | public TVRageShowInfo(String xmlShowName, String xmlSearchBy) { String[] tmp, tmp2; String line = ""; this.usrShowName = xmlShowName; try { URL url = new URL("http://www.tvrage.com/quickinfo.php?show=" + xmlShowName.replaceAll(" ", "%20")); BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream(), "UTF-8")); while ((line = in.readLine()) != null) { tmp = line.split("@"); if (tmp[0].equals("Show Name")) showName = tmp[1]; if (tmp[0].equals("Show URL")) showURL = tmp[1]; if (tmp[0].equals("Latest Episode")) { StringTokenizer st = new StringTokenizer(tmp[1], "^"); for (int i = 0; st.hasMoreTokens(); i++) { if (i == 0) { tmp2 = st.nextToken().split("x"); latestSeasonNum = tmp2[0]; latestEpisodeNum = tmp2[1]; if (latestSeasonNum.charAt(0) == '0') latestSeasonNum = latestSeasonNum.substring(1); } else if (i == 1) latestTitle = st.nextToken().replaceAll("&", "and"); else latestAirDate = st.nextToken(); } } if (tmp[0].equals("Next Episode")) { StringTokenizer st = new StringTokenizer(tmp[1], "^"); for (int i = 0; st.hasMoreTokens(); i++) { if (i == 0) { tmp2 = st.nextToken().split("x"); nextSeasonNum = tmp2[0]; nextEpisodeNum = tmp2[1]; if (nextSeasonNum.charAt(0) == '0') nextSeasonNum = nextSeasonNum.substring(1); } else if (i == 1) nextTitle = st.nextToken().replaceAll("&", "and"); else nextAirDate = st.nextToken(); } } if (tmp[0].equals("Status")) status = tmp[1]; if (tmp[0].equals("Airtime") && tmp.length > 1) { airTime = tmp[1]; } } if (airTime.length() > 10) { tmp = airTime.split("at"); airTimeHour = tmp[1]; } in.close(); if (xmlSearchBy.equals("Showname SeriesNum")) { url = new URL(showURL); in = new BufferedReader(new InputStreamReader(url.openStream())); while ((line = in.readLine()) != null) { if (line.indexOf("<b>Latest Episode: </b>") > -1) { tmp = line.split("'>"); if (tmp[5].indexOf(':') > -1) { tmp = tmp[5].split(":"); latestSeriesNum = tmp[0]; } } else if (line.indexOf("<b>Next Episode: </b>") > -1) { tmp = line.split("'>"); if (tmp[3].indexOf(':') > -1) { tmp = tmp[3].split(":"); nextSeriesNum = tmp[0]; } } } in.close(); } } catch (MalformedURLException e) { } catch (IOException e) { } } | private void enumeratePathArchive(final String archive) throws IOException { final boolean trace1 = m_trace1; final File fullArchive = new File(m_currentPathDir, archive); JarInputStream in = null; try { in = new JarInputStream(new BufferedInputStream(new FileInputStream(fullArchive), 32 * 1024)); final IPathHandler handler = m_handler; Manifest manifest = in.getManifest(); if (manifest == null) manifest = readManifestViaJarFile(fullArchive); handler.handleArchiveStart(m_currentPathDir, new File(archive), manifest); for (ZipEntry entry; (entry = in.getNextEntry()) != null; ) { if (trace1) m_log.trace1("enumeratePathArchive", "processing archive entry [" + entry.getName() + "] ..."); handler.handleArchiveEntry(in, entry); in.closeEntry(); } if (m_processManifest) { if (manifest == null) manifest = in.getManifest(); if (manifest != null) { final Attributes attributes = manifest.getMainAttributes(); if (attributes != null) { final String jarClassPath = attributes.getValue(Attributes.Name.CLASS_PATH); if (jarClassPath != null) { final StringTokenizer tokenizer = new StringTokenizer(jarClassPath); for (int p = 1; tokenizer.hasMoreTokens(); ) { final String relPath = tokenizer.nextToken(); final File archiveParent = fullArchive.getParentFile(); final File path = archiveParent != null ? new File(archiveParent, relPath) : new File(relPath); final String fullPath = m_canonical ? Files.canonicalizePathname(path.getPath()) : path.getPath(); if (m_pathSet.add(fullPath)) { if (m_verbose) m_log.verbose(" added manifest Class-Path entry [" + path + "]"); m_path.add(m_pathIndex + (p++), path); } } } } } } } catch (FileNotFoundException fnfe) { if ($assert.ENABLED) throw fnfe; } finally { if (in != null) try { in.close(); } catch (Exception ignore) { } } } | 17,533 |
1 | public void run() { try { FileChannel in = (new FileInputStream(file)).getChannel(); FileChannel out = (new FileOutputStream(updaterFile)).getChannel(); in.transferTo(0, file.length(), out); updater.setProgress(50); in.close(); out.close(); } catch (IOException e) { e.printStackTrace(); } startUpdater(); } | public static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | 17,534 |
1 | public byte[] getCoded(String name, String pass) { byte[] digest = null; if (pass != null && 0 < pass.length()) { try { MessageDigest md = MessageDigest.getInstance("SHA-1"); md.update(name.getBytes()); md.update(pass.getBytes()); digest = md.digest(); } catch (Exception e) { e.printStackTrace(); digest = null; } } return digest; } | public static String getMd5Hash(String text) { StringBuffer result = new StringBuffer(32); try { MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(text.getBytes()); Formatter f = new Formatter(result); byte[] digest = md5.digest(); for (int i = 0; i < digest.length; i++) { f.format("%02x", new Object[] { new Byte(digest[i]) }); } } catch (NoSuchAlgorithmException ex) { ex.printStackTrace(); } return result.toString(); } | 17,535 |
1 | public static boolean copyfile(String file0, String file1) { try { File f0 = new File(file0); File f1 = new File(file1); FileInputStream in = new FileInputStream(f0); FileOutputStream out = new FileOutputStream(f1); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); in = null; out = null; return true; } catch (Exception e) { return false; } } | public static void copy(File source, File destination) { try { FileInputStream fileInputStream = new FileInputStream(source); FileOutputStream fileOutputStream = new FileOutputStream(destination); FileChannel inputChannel = fileInputStream.getChannel(); FileChannel outputChannel = fileOutputStream.getChannel(); transfer(inputChannel, outputChannel, source.length(), 1024 * 1024 * 32, true, true); fileInputStream.close(); fileOutputStream.close(); } catch (Exception e) { e.printStackTrace(); } } | 17,536 |
0 | private static boolean loadResources(String ext) { InputStream in; try { URL url = Thread.currentThread().getContextClassLoader().getResource("bg/plambis/dict/local/i18n" + ext + ".xml"); if (url == null) return false; in = url.openStream(); } catch (IOException e1) { e1.printStackTrace(); return false; } try { Serializer serializer = new Persister(); resources = serializer.read(TextResource.class, in); } catch (Exception e) { e.printStackTrace(); return false; } return true; } | public void merge(VMImage image, VMSnapShot another) throws VMException { if (path == null || another.getPath() == null) throw new VMException("EmuVMSnapShot is NULL!"); logging.debug(LOG_NAME, "merge images " + path + " and " + another.getPath()); File target = new File(path); File src = new File(another.getPath()); if (target.isDirectory() || src.isDirectory()) return; try { FileInputStream in = new FileInputStream(another.getPath()); FileChannel inChannel = in.getChannel(); FileOutputStream out = new FileOutputStream(path, true); FileChannel outChannel = out.getChannel(); outChannel.transferFrom(inChannel, 0, inChannel.size()); outChannel.close(); inChannel.close(); } catch (IOException e) { throw new VMException(e); } } | 17,537 |
0 | public final synchronized boolean isValidLicenseFile() throws LicenseNotSetupException { if (!isSetup()) { throw new LicenseNotSetupException(); } boolean returnValue = false; Properties properties = getLicenseFile(); logger.debug("isValidLicenseFile: License to validate:"); logger.debug(properties); StringBuffer validationStringBuffer = new StringBuffer(); validationStringBuffer.append(LICENSE_KEY_KEY + ":" + properties.getProperty(LICENSE_KEY_KEY) + ","); validationStringBuffer.append(LICENSE_FILE_STATUS_KEY + ":" + properties.getProperty(LICENSE_FILE_STATUS_KEY) + ","); validationStringBuffer.append(LICENSE_FILE_USERS_KEY + ":" + properties.getProperty(LICENSE_FILE_USERS_KEY) + ","); validationStringBuffer.append(LICENSE_FILE_MAC_KEY + ":" + properties.getProperty(LICENSE_FILE_MAC_KEY) + ","); validationStringBuffer.append(LICENSE_FILE_HOST_NAME_KEY + ":" + properties.getProperty(LICENSE_FILE_HOST_NAME_KEY) + ","); validationStringBuffer.append(LICENSE_FILE_OFFSET_KEY + ":" + properties.getProperty(LICENSE_FILE_OFFSET_KEY) + ","); validationStringBuffer.append(LICENSE_FILE_EXP_DATE_KEY + ":" + properties.getProperty(LICENSE_FILE_EXP_DATE_KEY) + ","); validationStringBuffer.append(LICENSE_EXPIRES_KEY + ":" + properties.getProperty(LICENSE_EXPIRES_KEY)); logger.debug("isValidLicenseFile: Validation String Buffer: " + validationStringBuffer.toString()); String validationKey = (String) properties.getProperty(LICENSE_FILE_SHA_KEY); try { MessageDigest messageDigest = MessageDigest.getInstance("SHA-1"); messageDigest.update(validationStringBuffer.toString().getBytes()); String newValidation = Base64.encode(messageDigest.digest()); if (newValidation.equals(validationKey)) { if (getMACAddress().equals(Settings.getInstance().getMACAddress())) { returnValue = true; } } } catch (Exception exception) { System.out.println("Exception in LicenseInstanceVO.isValidLicenseFile"); } return returnValue; } | public FTPClient sample3c(String ftpserver, int ftpport, String proxyserver, int proxyport, String username, String password) throws SocketException, IOException { FTPHTTPClient ftpClient = new FTPHTTPClient(proxyserver, proxyport); ftpClient.setDefaultPort(ftpport); ftpClient.connect(ftpserver); ftpClient.login(username, password); return ftpClient; } | 17,538 |
1 | public void xtestURL2() throws Exception { URL url = new URL(IOTest.URL); InputStream inputStream = url.openStream(); OutputStream outputStream = new FileOutputStream("C:/Temp/testURL2.mp4"); IOUtils.copy(inputStream, outputStream); inputStream.close(); outputStream.close(); } | public void writeConfigurationFile() throws IOException, ComponentException { SystemConfig config = parent.getParentSystem().getConfiguration(); File original = config.getLocation(); File backup = new File(original.getParentFile(), original.getName() + "." + System.currentTimeMillis()); FileInputStream in = new FileInputStream(original); FileOutputStream out = new FileOutputStream(backup); byte[] buffer = new byte[2048]; try { int bytesread = 0; while ((bytesread = in.read(buffer)) > 0) { out.write(buffer, 0, bytesread); } } catch (IOException e) { logger.warn("Failed to copy backup of configuration file"); throw e; } finally { in.close(); out.close(); } FileWriter replace = new FileWriter(original); replace.write(config.toFileFormat()); replace.close(); logger.info("Re-wrote configuration file " + original.getPath()); } | 17,539 |
1 | public static String md5sum(String s, String alg) { try { MessageDigest md = MessageDigest.getInstance(alg); md.update(s.getBytes(), 0, s.length()); StringBuffer sb = new StringBuffer(); synchronized (sb) { for (byte b : md.digest()) sb.append(pad(Integer.toHexString(0xFF & b), ZERO.charAt(0), 2, true)); } return sb.toString(); } catch (Exception ex) { log(ex); } return null; } | private static String getUnsaltedHash(String algorithm, String input) throws NoSuchAlgorithmException { MessageDigest messageDigest = MessageDigest.getInstance(algorithm); messageDigest.reset(); messageDigest.update(input.getBytes(Main.DEFAULT_CHARSET)); byte[] digest = messageDigest.digest(); return String.format(Main.DEFAULT_LOCALE, "%0" + (digest.length << 1) + "x", new BigInteger(1, digest)); } | 17,540 |
0 | public void removeJarFiles() throws IOException { HashSet<GridNode> nodes = (HashSet) batchTask.returnNodeCollection(); Iterator<GridNode> ic = nodes.iterator(); InetAddress addLocal = InetAddress.getLocalHost(); String hostnameLocal = addLocal.getHostName(); while (ic.hasNext()) { GridNode node = ic.next(); String address = node.getPhysicalAddress(); InetAddress addr = InetAddress.getByName(address); byte[] rawAddr = addr.getAddress(); Map<String, String> attributes = node.getAttributes(); InetAddress hostname = InetAddress.getByAddress(rawAddr); if (hostname.getHostName().equals(hostnameLocal)) continue; String gridPath = attributes.get("GRIDGAIN_HOME"); FTPClient ftp = new FTPClient(); try { String[] usernamePass = inputNodes.get(hostname.getHostName()); ftp.connect(hostname); ftp.login(usernamePass[0], usernamePass[1]); int reply = ftp.getReplyCode(); if (!FTPReply.isPositiveCompletion(reply)) { ftp.disconnect(); System.err.println("FTP server refused connection."); continue; } ftp.login(usernamePass[0], usernamePass[1]); String directory = gridPath + "/libs/ext/"; ftp.changeWorkingDirectory(directory); FTPFile[] fs = ftp.listFiles(); for (FTPFile f : fs) { if (f.isDirectory()) continue; System.out.println(f.getName()); ftp.deleteFile(f.getName()); } ftp.sendCommand("rm *"); ftp.logout(); ftp.disconnect(); } catch (Exception e) { MessageCenter.getMessageCenter(BatchMainSetup.class).error("Problems with the FTP connection." + "A file has not been succesfully transfered", e); e.printStackTrace(); } } } | public static String md5String(String string) { try { MessageDigest msgDigest = MessageDigest.getInstance("MD5"); msgDigest.update(string.getBytes("UTF-8")); byte[] digest = msgDigest.digest(); String result = ""; for (int i = 0; i < digest.length; i++) { int value = digest[i]; if (value < 0) value += 256; result += Integer.toHexString(value); } return result; } catch (UnsupportedEncodingException error) { throw new IllegalArgumentException(error); } catch (NoSuchAlgorithmException error) { throw new IllegalArgumentException(error); } } | 17,541 |
1 | public void writeTo(OutputStream out) throws IOException { if (!closed) { throw new IOException("Stream not closed"); } if (isInMemory()) { memoryOutputStream.writeTo(out); } else { FileInputStream fis = new FileInputStream(outputFile); try { IOUtils.copy(fis, out); } finally { IOUtils.closeQuietly(fis); } } } | @Override protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { resp.addHeader("Cache-Control", "max-age=" + Constants.HTTP_CACHE_SECONDS); String uuid = req.getRequestURI().substring(req.getRequestURI().indexOf(Constants.SERVLET_THUMBNAIL_PREFIX) + Constants.SERVLET_THUMBNAIL_PREFIX.length() + 1); if (uuid != null && !"".equals(uuid)) { resp.setContentType("image/jpeg"); StringBuffer sb = new StringBuffer(); sb.append(config.getFedoraHost()).append("/objects/").append(uuid).append("/datastreams/IMG_THUMB/content"); InputStream is = null; if (!Constants.MISSING.equals(uuid)) { is = RESTHelper.get(sb.toString(), config.getFedoraLogin(), config.getFedoraPassword(), true); } else { is = new FileInputStream(new File("images/other/file_not_found.png")); } if (is == null) { return; } ServletOutputStream os = resp.getOutputStream(); try { IOUtils.copyStreams(is, os); } catch (IOException e) { } finally { os.flush(); if (is != null) { try { is.close(); } catch (IOException e) { } finally { is = null; } } } resp.setStatus(200); } else { resp.setStatus(404); } } | 17,542 |
1 | protected String md5sum(String toCompute) throws Exception { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(toCompute.getBytes()); java.math.BigInteger hash = new java.math.BigInteger(1, md.digest()); return hash.toString(16); } | public byte[] md5(String clearText) { MessageDigest md; byte[] digest; try { md = MessageDigest.getInstance("MD5"); md.update(clearText.getBytes()); digest = md.digest(); } catch (NoSuchAlgorithmException e) { throw new UnsupportedOperationException(e.toString()); } return digest; } | 17,543 |
0 | public boolean download(URL url, File file) { OutputStream out = null; URLConnection conn = null; InputStream in = null; try { out = new BufferedOutputStream(new FileOutputStream(file)); conn = url.openConnection(); in = conn.getInputStream(); byte[] buffer = new byte[4096]; int numRead; long numWritten = 0; while ((numRead = in.read(buffer)) != -1) { out.write(buffer, 0, numRead); numWritten += numRead; } } catch (Exception e) { System.out.println(e); return false; } finally { try { if (in != null) { in.close(); } if (out != null) { out.close(); } } catch (IOException ioe) { return false; } } return true; } | public static void copyFileStreams(File fromFile, File toFile) throws IOException { if (!fromFile.exists()) { return; } FileInputStream fis = new FileInputStream(fromFile); FileOutputStream fos = new FileOutputStream(toFile); int read = 0; byte[] buf = new byte[1024]; while (-1 != read) { read = fis.read(buf); if (read >= 0) { fos.write(buf, 0, read); } } fos.close(); fis.close(); } | 17,544 |
1 | public String encryptLdapPassword(String algorithm) { String sEncrypted = _password; if ((_password != null) && (_password.length() > 0)) { algorithm = Val.chkStr(algorithm); boolean bMD5 = algorithm.equalsIgnoreCase("MD5"); boolean bSHA = algorithm.equalsIgnoreCase("SHA") || algorithm.equalsIgnoreCase("SHA1") || algorithm.equalsIgnoreCase("SHA-1"); if (bSHA || bMD5) { String sAlgorithm = "MD5"; if (bSHA) { sAlgorithm = "SHA"; } try { MessageDigest md = MessageDigest.getInstance(sAlgorithm); md.update(getPassword().getBytes("UTF-8")); sEncrypted = "{" + sAlgorithm + "}" + (new BASE64Encoder()).encode(md.digest()); } catch (NoSuchAlgorithmException e) { sEncrypted = null; e.printStackTrace(System.err); } catch (UnsupportedEncodingException e) { sEncrypted = null; e.printStackTrace(System.err); } } } return sEncrypted; } | public static String GetMD5SUM(String s) throws NoSuchAlgorithmException { MessageDigest algorithm = MessageDigest.getInstance("MD5"); algorithm.reset(); algorithm.update(s.getBytes()); byte messageDigest[] = algorithm.digest(); String md5sum = Base64.encode(messageDigest); return md5sum; } | 17,545 |
1 | public static boolean copy(File source, File target, boolean owrite) { if (!source.exists()) { log.error("Invalid input to copy: source " + source + "doesn't exist"); return false; } else if (!source.isFile()) { log.error("Invalid input to copy: source " + source + "isn't a file."); return false; } else if (target.exists() && !owrite) { log.error("Invalid input to copy: target " + target + " exists."); return false; } try { BufferedInputStream in = new BufferedInputStream(new FileInputStream(source)); BufferedOutputStream out = new BufferedOutputStream(new FileOutputStream(target)); byte buffer[] = new byte[1024]; int read = -1; while ((read = in.read(buffer, 0, 1024)) != -1) out.write(buffer, 0, read); out.flush(); out.close(); in.close(); return true; } catch (IOException e) { log.error("Copy failed: ", e); return false; } } | public static void notify(String msg) throws Exception { String url = "http://api.clickatell.com/http/sendmsg?"; url = add(url, "user", user); url = add(url, "password", password); url = add(url, "api_id", apiId); url = add(url, "to", to); url = add(url, "text", msg); URL u = new URL(url); URLConnection c = u.openConnection(); InputStream is = c.getInputStream(); IOUtils.copy(is, System.out); IOUtils.closeQuietly(is); System.out.println(); } | 17,546 |
1 | public String merge(int width, int height) throws Exception { htErrors.clear(); sendGetImageRequests(width, height); Vector files = new Vector(); ConcurrentHTTPTransactionHandler c = new ConcurrentHTTPTransactionHandler(); c.setCache(cache); c.checkIfModified(false); for (int i = 0; i < vImageUrls.size(); i++) { if ((String) vImageUrls.get(i) != null) { c.register((String) vImageUrls.get(i)); } else { } } c.doTransactions(); vTransparency = new Vector(); for (int i = 0; i < vImageUrls.size(); i++) { if (vImageUrls.get(i) != null) { String path = c.getResponseFilePath((String) vImageUrls.get(i)); if (path != null) { String contentType = c.getHeaderValue((String) vImageUrls.get(i), "content-type"); if (contentType.startsWith("image")) { files.add(path); vTransparency.add(htTransparency.get(vRank.get(i))); } } } } if (files.size() > 1) { File output = TempFiles.getFile(); String path = output.getPath(); ImageMerger.mergeAndSave(files, vTransparency, path, ImageMerger.GIF); imageName = output.getName(); imagePath = output.getPath(); return (imageName); } else if (files.size() == 1) { File f = new File((String) files.get(0)); File out = TempFiles.getFile(); BufferedInputStream is = new BufferedInputStream(new FileInputStream(f)); BufferedOutputStream os = new BufferedOutputStream(new FileOutputStream(out)); byte buf[] = new byte[1024]; for (int nRead; (nRead = is.read(buf, 0, 1024)) > 0; os.write(buf, 0, nRead)) ; os.flush(); os.close(); is.close(); imageName = out.getName(); return imageName; } else return ""; } | public void service(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException { long time = System.currentTimeMillis(); String text = request.getParameter("text"); String parsedQueryString = request.getQueryString(); if (text == null) { String[] fonts = new File(ctx.getRealPath("/WEB-INF/fonts/")).list(); text = "accepted params: text,font,size,color,background,nocache,aa,break"; response.setContentType("text/html"); PrintWriter out = response.getWriter(); out.println("<html>"); out.println("<body>"); out.println("<p>"); out.println("Usage: " + request.getServletPath() + "?params[]<BR>"); out.println("Acceptable Params are: <UL>"); out.println("<LI><B>text</B><BR>"); out.println("The body of the image"); out.println("<LI><B>font</B><BR>"); out.println("Available Fonts (in folder '/WEB-INF/fonts/') <UL>"); for (int i = 0; i < fonts.length; i++) { if (!"CVS".equals(fonts[i])) { out.println("<LI>" + fonts[i]); } } out.println("</UL>"); out.println("<LI><B>size</B><BR>"); out.println("An integer, i.e. size=100"); out.println("<LI><B>color</B><BR>"); out.println("in rgb, i.e. color=255,0,0"); out.println("<LI><B>background</B><BR>"); out.println("in rgb, i.e. background=0,0,255"); out.println("transparent, i.e. background=''"); out.println("<LI><B>aa</B><BR>"); out.println("antialias (does not seem to work), aa=true"); out.println("<LI><B>nocache</B><BR>"); out.println("if nocache is set, we will write out the image file every hit. Otherwise, will write it the first time and then read the file"); out.println("<LI><B>break</B><BR>"); out.println("An integer greater than 0 (zero), i.e. break=20"); out.println("</UL>"); out.println("</UL>"); out.println("Example:<BR>"); out.println("<img border=1 src=\"" + request.getServletPath() + "?font=arial.ttf&text=testing&color=255,0,0&size=100\"><BR>"); out.println("<img border=1 src='" + request.getServletPath() + "?font=arial.ttf&text=testing&color=255,0,0&size=100'><BR>"); out.println("</body>"); out.println("</html>"); return; } String myFile = (request.getQueryString() == null) ? "empty" : PublicEncryptionFactory.digestString(parsedQueryString).replace('\\', '_').replace('/', '_'); myFile = Config.getStringProperty("PATH_TO_TITLE_IMAGES") + myFile + ".png"; File file = new File(ctx.getRealPath(myFile)); if (!file.exists() || (request.getParameter("nocache") != null)) { StringTokenizer st = null; Iterator i = hm.entrySet().iterator(); while (i.hasNext()) { Map.Entry entry = (Map.Entry) i.next(); String key = (String) entry.getKey(); if (parsedQueryString.indexOf(key) > -1) { String val = (String) entry.getValue(); parsedQueryString = UtilMethods.replace(parsedQueryString, key, val); } } st = new StringTokenizer(parsedQueryString, "&"); while (st.hasMoreTokens()) { try { String x = st.nextToken(); String key = x.split("=")[0]; String val = x.split("=")[1]; if ("text".equals(key)) { text = val; } } catch (Exception e) { } } text = URLDecoder.decode(text, "UTF-8"); Logger.debug(this.getClass(), "building title image:" + file.getAbsolutePath()); file.createNewFile(); try { String font_file = "/WEB-INF/fonts/arial.ttf"; if (request.getParameter("font") != null) { font_file = "/WEB-INF/fonts/" + request.getParameter("font"); } font_file = ctx.getRealPath(font_file); float size = 20.0f; if (request.getParameter("size") != null) { size = Float.parseFloat(request.getParameter("size")); } Color background = Color.white; if (request.getParameter("background") != null) { if (request.getParameter("background").equals("transparent")) try { background = new Color(Color.TRANSLUCENT); } catch (Exception e) { } else try { st = new StringTokenizer(request.getParameter("background"), ","); int x = Integer.parseInt(st.nextToken()); int y = Integer.parseInt(st.nextToken()); int z = Integer.parseInt(st.nextToken()); background = new Color(x, y, z); } catch (Exception e) { } } Color color = Color.black; if (request.getParameter("color") != null) { try { st = new StringTokenizer(request.getParameter("color"), ","); int x = Integer.parseInt(st.nextToken()); int y = Integer.parseInt(st.nextToken()); int z = Integer.parseInt(st.nextToken()); color = new Color(x, y, z); } catch (Exception e) { Logger.info(this, e.getMessage()); } } int intBreak = 0; if (request.getParameter("break") != null) { try { intBreak = Integer.parseInt(request.getParameter("break")); } catch (Exception e) { } } java.util.ArrayList<String> lines = null; if (intBreak > 0) { lines = new java.util.ArrayList<String>(10); lines.ensureCapacity(10); int start = 0; String line = null; int offSet; for (; ; ) { try { for (; isWhitespace(text.charAt(start)); ++start) ; if (isWhitespace(text.charAt(start + intBreak - 1))) { lines.add(text.substring(start, start + intBreak)); start += intBreak; } else { for (offSet = -1; !isWhitespace(text.charAt(start + intBreak + offSet)); ++offSet) ; lines.add(text.substring(start, start + intBreak + offSet)); start += intBreak + offSet; } } catch (Exception e) { if (text.length() > start) lines.add(leftTrim(text.substring(start))); break; } } } else { java.util.StringTokenizer tokens = new java.util.StringTokenizer(text, "|"); if (tokens.hasMoreTokens()) { lines = new java.util.ArrayList<String>(10); lines.ensureCapacity(10); for (; tokens.hasMoreTokens(); ) lines.add(leftTrim(tokens.nextToken())); } } Font font = Font.createFont(Font.TRUETYPE_FONT, new FileInputStream(font_file)); font = font.deriveFont(size); BufferedImage buffer = new BufferedImage(1, 1, BufferedImage.TYPE_INT_RGB); Graphics2D g2 = buffer.createGraphics(); if (request.getParameter("aa") != null) { g2.setRenderingHint(RenderingHints.KEY_ANTIALIASING, RenderingHints.VALUE_ANTIALIAS_ON); } else { g2.setRenderingHint(RenderingHints.KEY_ANTIALIASING, RenderingHints.VALUE_ANTIALIAS_OFF); } FontRenderContext fc = g2.getFontRenderContext(); Rectangle2D fontBounds = null; Rectangle2D textLayoutBounds = null; TextLayout tl = null; boolean useTextLayout = false; useTextLayout = Boolean.parseBoolean(request.getParameter("textLayout")); int width = 0; int height = 0; int offSet = 0; if (1 < lines.size()) { int heightMultiplier = 0; int maxWidth = 0; for (; heightMultiplier < lines.size(); ++heightMultiplier) { fontBounds = font.getStringBounds(lines.get(heightMultiplier), fc); tl = new TextLayout(lines.get(heightMultiplier), font, fc); textLayoutBounds = tl.getBounds(); if (maxWidth < Math.ceil(fontBounds.getWidth())) maxWidth = (int) Math.ceil(fontBounds.getWidth()); } width = maxWidth; int boundHeigh = (int) Math.ceil((!useTextLayout ? fontBounds.getHeight() : textLayoutBounds.getHeight())); height = boundHeigh * lines.size(); offSet = ((int) (boundHeigh * 0.2)) * (lines.size() - 1); } else { fontBounds = font.getStringBounds(text, fc); tl = new TextLayout(text, font, fc); textLayoutBounds = tl.getBounds(); width = (int) fontBounds.getWidth(); height = (int) Math.ceil((!useTextLayout ? fontBounds.getHeight() : textLayoutBounds.getHeight())); } buffer = new BufferedImage(width, height - offSet, BufferedImage.TYPE_INT_ARGB); g2 = buffer.createGraphics(); g2.setRenderingHint(RenderingHints.KEY_ANTIALIASING, RenderingHints.VALUE_ANTIALIAS_ON); g2.setFont(font); g2.setColor(background); if (!background.equals(new Color(Color.TRANSLUCENT))) g2.fillRect(0, 0, width, height); g2.setColor(color); if (1 < lines.size()) { for (int numLine = 0; numLine < lines.size(); ++numLine) { int y = (int) Math.ceil((!useTextLayout ? fontBounds.getY() : textLayoutBounds.getY())); g2.drawString(lines.get(numLine), 0, -y * (numLine + 1)); } } else { int y = (int) Math.ceil((!useTextLayout ? fontBounds.getY() : textLayoutBounds.getY())); g2.drawString(text, 0, -y); } BufferedOutputStream out = new BufferedOutputStream(new FileOutputStream(file)); ImageIO.write(buffer, "png", out); out.close(); } catch (Exception ex) { Logger.info(this, ex.toString()); } } response.setContentType("image/png"); BufferedInputStream bis = new BufferedInputStream(new FileInputStream(file)); OutputStream os = response.getOutputStream(); byte[] buf = new byte[4096]; int i = 0; while ((i = bis.read(buf)) != -1) { os.write(buf, 0, i); } os.close(); bis.close(); Logger.debug(this.getClass(), "time to build title: " + (System.currentTimeMillis() - time) + "ms"); return; } | 17,547 |
1 | private void convertFile() { final File fileToConvert = filePanel.getInputFile(); final File convertedFile = filePanel.getOutputFile(); if (fileToConvert == null || convertedFile == null) { Main.showMessage("Select valid files for both input and output"); return; } if (fileToConvert.getName().equals(convertedFile.getName())) { Main.showMessage("Input and Output files are same.. select different files"); return; } final int len = (int) fileToConvert.length(); progressBar.setMinimum(0); progressBar.setMaximum(len); progressBar.setValue(0); try { fileCopy(fileToConvert, fileToConvert.getAbsolutePath() + ".bakup"); } catch (IOException e) { Main.showMessage("Unable to Backup input file"); return; } final BufferedReader bufferedReader; try { bufferedReader = new BufferedReader(new FileReader(fileToConvert)); } catch (FileNotFoundException e) { Main.showMessage("Unable to create reader - file not found"); return; } final BufferedWriter bufferedWriter; try { bufferedWriter = new BufferedWriter(new FileWriter(convertedFile)); } catch (IOException e) { Main.showMessage("Unable to create writer for output file"); return; } String input; try { while ((input = bufferedReader.readLine()) != null) { if (stopRequested) { break; } bufferedWriter.write(parseLine(input)); bufferedWriter.newLine(); progressBar.setValue(progressBar.getValue() + input.length()); } } catch (IOException e) { Main.showMessage("Unable to convert " + e.getMessage()); return; } finally { try { bufferedReader.close(); bufferedWriter.close(); } catch (IOException e) { Main.showMessage("Unable to close reader/writer " + e.getMessage()); return; } } if (!stopRequested) { filePanel.readOutputFile(); progressBar.setValue(progressBar.getMaximum()); Main.setStatus("Transliterate Done."); } progressBar.setValue(progressBar.getMinimum()); } | private void displayDiffResults() throws IOException { File outFile = File.createTempFile("diff", ".htm"); outFile.deleteOnExit(); FileOutputStream outStream = new FileOutputStream(outFile); BufferedWriter out = new BufferedWriter(new OutputStreamWriter(outStream)); out.write("<html><head><title>LOC Differences</title>\n" + SCRIPT + "</head>\n" + "<body bgcolor='#ffffff'>\n" + "<div onMouseOver=\"window.defaultStatus='Metrics'\">\n"); if (addedTable.length() > 0) { out.write("<table border><tr><th>Files Added:</th>" + "<th>Add</th><th>Type</th></tr>"); out.write(addedTable.toString()); out.write("</table><br><br>"); } if (modifiedTable.length() > 0) { out.write("<table border><tr><th>Files Modified:</th>" + "<th>Base</th><th>Del</th><th>Mod</th><th>Add</th>" + "<th>Total</th><th>Type</th></tr>"); out.write(modifiedTable.toString()); out.write("</table><br><br>"); } if (deletedTable.length() > 0) { out.write("<table border><tr><th>Files Deleted:</th>" + "<th>Del</th><th>Type</th></tr>"); out.write(deletedTable.toString()); out.write("</table><br><br>"); } out.write("<table name=METRICS BORDER>\n"); if (modifiedTable.length() > 0 || deletedTable.length() > 0) { out.write("<tr><td>Base: </td><td>"); out.write(Long.toString(base)); out.write("</td></tr>\n<tr><td>Deleted: </td><td>"); out.write(Long.toString(deleted)); out.write("</td></tr>\n<tr><td>Modified: </td><td>"); out.write(Long.toString(modified)); out.write("</td></tr>\n<tr><td>Added: </td><td>"); out.write(Long.toString(added)); out.write("</td></tr>\n<tr><td>New & Changed: </td><td>"); out.write(Long.toString(added + modified)); out.write("</td></tr>\n"); } out.write("<tr><td>Total: </td><td>"); out.write(Long.toString(total)); out.write("</td></tr>\n</table></div>"); redlinesOut.close(); out.flush(); InputStream redlines = new FileInputStream(redlinesTempFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = redlines.read(buffer)) != -1) outStream.write(buffer, 0, bytesRead); outStream.write("</BODY></HTML>".getBytes()); outStream.close(); Browser.launch(outFile.toURL().toString()); } | 17,548 |
0 | public void loadScripts() { org.apache.batik.script.Window window = null; NodeList scripts = document.getElementsByTagNameNS(SVGConstants.SVG_NAMESPACE_URI, SVGConstants.SVG_SCRIPT_TAG); int len = scripts.getLength(); if (len == 0) { return; } for (int i = 0; i < len; i++) { Element script = (Element) scripts.item(i); String type = script.getAttributeNS(null, SVGConstants.SVG_TYPE_ATTRIBUTE); if (type.length() == 0) { type = SVGConstants.SVG_SCRIPT_TYPE_DEFAULT_VALUE; } if (type.equals(SVGConstants.SVG_SCRIPT_TYPE_JAVA)) { try { String href = XLinkSupport.getXLinkHref(script); ParsedURL purl = new ParsedURL(XMLBaseSupport.getCascadedXMLBase(script), href); checkCompatibleScriptURL(type, purl); DocumentJarClassLoader cll; URL docURL = null; try { docURL = new URL(docPURL.toString()); } catch (MalformedURLException mue) { } cll = new DocumentJarClassLoader(new URL(purl.toString()), docURL); URL url = cll.findResource("META-INF/MANIFEST.MF"); if (url == null) { continue; } Manifest man = new Manifest(url.openStream()); String sh; sh = man.getMainAttributes().getValue("Script-Handler"); if (sh != null) { ScriptHandler h; h = (ScriptHandler) cll.loadClass(sh).newInstance(); if (window == null) { window = createWindow(); } h.run(document, window); } sh = man.getMainAttributes().getValue("SVG-Handler-Class"); if (sh != null) { EventListenerInitializer initializer; initializer = (EventListenerInitializer) cll.loadClass(sh).newInstance(); if (window == null) { window = createWindow(); } initializer.initializeEventListeners((SVGDocument) document); } } catch (Exception e) { if (userAgent != null) { userAgent.displayError(e); } } continue; } Interpreter interpreter = getInterpreter(type); if (interpreter == null) continue; try { String href = XLinkSupport.getXLinkHref(script); String desc = null; Reader reader; if (href.length() > 0) { desc = href; ParsedURL purl = new ParsedURL(XMLBaseSupport.getCascadedXMLBase(script), href); checkCompatibleScriptURL(type, purl); reader = new InputStreamReader(purl.openStream()); } else { checkCompatibleScriptURL(type, docPURL); DocumentLoader dl = bridgeContext.getDocumentLoader(); Element e = script; SVGDocument d = (SVGDocument) e.getOwnerDocument(); int line = dl.getLineNumber(script); desc = Messages.formatMessage(INLINE_SCRIPT_DESCRIPTION, new Object[] { d.getURL(), "<" + script.getNodeName() + ">", new Integer(line) }); Node n = script.getFirstChild(); if (n != null) { StringBuffer sb = new StringBuffer(); while (n != null) { if (n.getNodeType() == Node.CDATA_SECTION_NODE || n.getNodeType() == Node.TEXT_NODE) sb.append(n.getNodeValue()); n = n.getNextSibling(); } reader = new StringReader(sb.toString()); } else { continue; } } interpreter.evaluate(reader, desc); } catch (IOException e) { if (userAgent != null) { userAgent.displayError(e); } return; } catch (InterpreterException e) { System.err.println("InterpExcept: " + e); handleInterpreterException(e); return; } catch (SecurityException e) { if (userAgent != null) { userAgent.displayError(e); } } } } | public String preProcessHTML(String uri) { final StringBuffer buf = new StringBuffer(); try { HTMLDocument doc = new HTMLDocument() { public HTMLEditorKit.ParserCallback getReader(int pos) { return new HTMLEditorKit.ParserCallback() { public void handleText(char[] data, int pos) { buf.append(data); buf.append('\n'); } }; } }; URL url = new URI(uri).toURL(); URLConnection conn = url.openConnection(); Reader rd = new InputStreamReader(conn.getInputStream()); new ParserDelegator().parse(rd, doc.getReader(0), Boolean.TRUE); } catch (MalformedURLException e) { System.err.println(e.getMessage()); e.printStackTrace(); } catch (URISyntaxException e) { System.err.println(e.getMessage()); e.printStackTrace(); } catch (IOException e) { System.err.println(e.getMessage()); e.printStackTrace(); } return buf.toString(); } | 17,549 |
1 | public static void doVersionCheck(View view) { view.showWaitCursor(); try { URL url = new URL(jEdit.getProperty("version-check.url")); InputStream in = url.openStream(); BufferedReader bin = new BufferedReader(new InputStreamReader(in)); String line; String version = null; String build = null; while ((line = bin.readLine()) != null) { if (line.startsWith(".version")) version = line.substring(8).trim(); else if (line.startsWith(".build")) build = line.substring(6).trim(); } bin.close(); if (version != null && build != null) { if (jEdit.getBuild().compareTo(build) < 0) newVersionAvailable(view, version, url); else { GUIUtilities.message(view, "version-check" + ".up-to-date", new String[0]); } } } catch (IOException e) { String[] args = { jEdit.getProperty("version-check.url"), e.toString() }; GUIUtilities.error(view, "read-error", args); } view.hideWaitCursor(); } | private void importExample(boolean server) throws IOException, XMLStreamException, FactoryConfigurationError { InputStream example = null; if (server) { monitor.setNote(Messages.getString("ImportExampleDialog.Cont")); monitor.setProgress(0); String page = engine.getConfiguration().getProperty("example.url"); URL url = new URL(page); BufferedReader rr = new BufferedReader(new InputStreamReader(url.openStream())); try { sleep(3000); } catch (InterruptedException e1) { Logger.getLogger(this.getClass()).debug("Internal error.", e1); } if (monitor.isCanceled()) { return; } try { while (rr.ready()) { if (monitor.isCanceled()) { return; } String l = rr.readLine(); if (example == null) { int i = l.indexOf("id=\"example\""); if (i > 0) { l = l.substring(i + 19); l = l.substring(0, l.indexOf('"')); url = new URL(l); example = url.openStream(); } } } } catch (IOException ex) { throw ex; } finally { if (rr != null) { try { rr.close(); } catch (Exception e) { Logger.getLogger(this.getClass()).debug("Internal error.", e); } } } } else { InputStream is = ApplicationHelper.class.getClassLoader().getResourceAsStream("gtd-free-example.xml"); if (is != null) { example = is; } } if (example != null) { if (monitor.isCanceled()) { try { example.close(); } catch (IOException e) { Logger.getLogger(this.getClass()).debug("Internal error.", e); } return; } monitor.setNote(Messages.getString("ImportExampleDialog.Read")); monitor.setProgress(1); model = new GTDModel(null); GTDDataXMLTools.importFile(model, example); try { example.close(); } catch (IOException e) { Logger.getLogger(this.getClass()).debug("Internal error.", e); } if (monitor.isCanceled()) { return; } monitor.setNote(Messages.getString("ImportExampleDialog.Imp.File")); monitor.setProgress(2); try { SwingUtilities.invokeAndWait(new Runnable() { @Override public void run() { if (monitor.isCanceled()) { return; } engine.getGTDModel().importData(model); } }); } catch (InterruptedException e1) { Logger.getLogger(this.getClass()).debug("Internal error.", e1); } catch (InvocationTargetException e1) { Logger.getLogger(this.getClass()).debug("Internal error.", e1); } } else { throw new IOException("Failed to obtain remote example file."); } } | 17,550 |
1 | public void actualizar() throws SQLException, ClassNotFoundException, Exception { Connection conn = null; PreparedStatement ms = null; if (!validado) { validado = validar(); } if (!validado) { throw new Exception("No s'ha realitzat la validació de les dades del registre "); } registroActualizado = false; try { int fzaanoe; String campo; fechaTest = dateF.parse(datasalida); Calendar cal = Calendar.getInstance(); cal.setTime(fechaTest); DateFormat date1 = new SimpleDateFormat("yyyyMMdd"); fzaanoe = Integer.parseInt(anoSalida); int fzafent = Integer.parseInt(date1.format(fechaTest)); conn = ToolsBD.getConn(); conn.setAutoCommit(false); int fzanume = Integer.parseInt(numeroSalida); int fzacagc = Integer.parseInt(oficina); int off_codi = 0; try { off_codi = Integer.parseInt(oficinafisica); } catch (Exception e) { } fechaTest = dateF.parse(data); cal.setTime(fechaTest); int fzafdoc = Integer.parseInt(date1.format(fechaTest)); String fzacone, fzacone2; if (idioex.equals("1")) { fzacone = comentario; fzacone2 = ""; } else { fzacone = ""; fzacone2 = comentario; } String fzaproce; int fzactagg, fzacagge; if (fora.equals("")) { fzactagg = 90; fzacagge = Integer.parseInt(balears); fzaproce = ""; } else { fzaproce = fora; fzactagg = 0; fzacagge = 0; } int ceros = 0; int fzacorg = Integer.parseInt(remitent); int fzanent; String fzacent; if (altres.equals("")) { altres = ""; fzanent = Integer.parseInt(entidad2); fzacent = entidadCastellano; } else { fzanent = 0; fzacent = ""; } int fzacidi = Integer.parseInt(idioex); horaTest = horaF.parse(hora); cal.setTime(horaTest); DateFormat hhmm = new SimpleDateFormat("HHmm"); int fzahora = Integer.parseInt(hhmm.format(horaTest)); if (entrada1.equals("")) { entrada1 = "0"; } if (entrada2.equals("")) { entrada2 = "0"; } int fzanloc = Integer.parseInt(entrada1); int fzaaloc = Integer.parseInt(entrada2); if (disquet.equals("")) { disquet = "0"; } int fzandis = Integer.parseInt(disquet); if (fzandis > 0) { ToolsBD.actualizaDisqueteEntrada(conn, fzandis, oficina, anoSalida, errores); } Date fechaSystem = new Date(); DateFormat aaaammdd = new SimpleDateFormat("yyyyMMdd"); int fzafsis = Integer.parseInt(aaaammdd.format(fechaSystem)); DateFormat hhmmss = new SimpleDateFormat("HHmmss"); DateFormat sss = new SimpleDateFormat("S"); String ss = sss.format(fechaSystem); if (ss.length() > 2) { ss = ss.substring(0, 2); } int fzahsis = Integer.parseInt(hhmmss.format(fechaSystem) + ss); if (correo != null) { String insertBZNCORR = "INSERT INTO BZNCORR (FZPCENSA, FZPCAGCO, FZPANOEN, FZPNUMEN, FZPNCORR)" + "VALUES (?,?,?,?,?)"; String updateBZNCORR = "UPDATE BZNCORR SET FZPNCORR=? WHERE FZPCENSA=? AND FZPCAGCO=? AND FZPANOEN=? AND FZPNUMEN=?"; String deleteBZNCORR = "DELETE FROM BZNCORR WHERE FZPCENSA=? AND FZPCAGCO=? AND FZPANOEN=? AND FZPNUMEN=?"; int actualizados = 0; if (!correo.trim().equals("")) { ms = conn.prepareStatement(updateBZNCORR); ms.setString(1, correo); ms.setString(2, "S"); ms.setInt(3, fzacagc); ms.setInt(4, fzaanoe); ms.setInt(5, fzanume); actualizados = ms.executeUpdate(); ms.close(); if (actualizados == 0) { ms = conn.prepareStatement(insertBZNCORR); ms.setString(1, "S"); ms.setInt(2, fzacagc); ms.setInt(3, fzaanoe); ms.setInt(4, fzanume); ms.setString(5, correo); ms.execute(); ms.close(); } } else { ms = conn.prepareStatement(deleteBZNCORR); ms.setString(1, "S"); ms.setInt(2, fzacagc); ms.setInt(3, fzaanoe); ms.setInt(4, fzanume); ms.execute(); } } String deleteOfifis = "DELETE FROM BZSALOFF WHERE FOSANOEN=? AND FOSNUMEN=? AND FOSCAGCO=?"; ms = conn.prepareStatement(deleteOfifis); ms.setInt(1, fzaanoe); ms.setInt(2, fzanume); ms.setInt(3, fzacagc); ms.execute(); ms.close(); String insertOfifis = "INSERT INTO BZSALOFF (FOSANOEN, FOSNUMEN, FOSCAGCO, OFS_CODI)" + "VALUES (?,?,?,?)"; ms = conn.prepareStatement(insertOfifis); ms.setInt(1, fzaanoe); ms.setInt(2, fzanume); ms.setInt(3, fzacagc); ms.setInt(4, off_codi); ms.execute(); ms.close(); ms = conn.prepareStatement("UPDATE BZSALIDA SET FZSFDOCU=?, FZSREMIT=?, FZSCONEN=?, FZSCTIPE=?, " + "FZSCEDIE=?, FZSENULA=?, FZSPROCE=?, FZSFENTR=?, FZSCTAGG=?, FZSCAGGE=?, FZSCORGA=?, " + "FZSCENTI=?, FZSNENTI=?, FZSHORA=?, FZSCIDIO=?, FZSCONE2=?, FZSNLOC=?, FZSALOC=?, FZSNDIS=?, " + "FZSCUSU=?, FZSCIDI=? WHERE FZSANOEN=? AND FZSNUMEN=? AND FZSCAGCO=? "); ms.setInt(1, fzafdoc); ms.setString(2, (altres.length() > 30) ? altres.substring(0, 30) : altres); ms.setString(3, (fzacone.length() > 160) ? fzacone.substring(0, 160) : fzacone); ms.setString(4, (tipo.length() > 2) ? tipo.substring(0, 1) : tipo); ms.setString(5, "N"); ms.setString(6, (registroAnulado.length() > 1) ? registroAnulado.substring(0, 1) : registroAnulado); ms.setString(7, (fzaproce.length() > 25) ? fzaproce.substring(0, 25) : fzaproce); ms.setInt(8, fzafent); ms.setInt(9, fzactagg); ms.setInt(10, fzacagge); ms.setInt(11, fzacorg); ms.setString(12, (fzacent.length() > 7) ? fzacent.substring(0, 8) : fzacent); ms.setInt(13, fzanent); ms.setInt(14, fzahora); ms.setInt(15, fzacidi); ms.setString(16, (fzacone2.length() > 160) ? fzacone2.substring(0, 160) : fzacone2); ms.setInt(17, fzanloc); ms.setInt(18, fzaaloc); ms.setInt(19, fzandis); ms.setString(20, (usuario.toUpperCase().length() > 10) ? usuario.toUpperCase().substring(0, 10) : usuario.toUpperCase()); ms.setString(21, idioma); ms.setInt(22, fzaanoe); ms.setInt(23, fzanume); ms.setInt(24, fzacagc); boolean modificado = false; if (!motivo.equals("")) { javax.naming.InitialContext contexto = new javax.naming.InitialContext(); Object ref = contexto.lookup("es.caib.regweb.RegistroModificadoSalidaHome"); RegistroModificadoSalidaHome home = (RegistroModificadoSalidaHome) javax.rmi.PortableRemoteObject.narrow(ref, RegistroModificadoSalidaHome.class); RegistroModificadoSalida registroModificado = home.create(); registroModificado.setAnoSalida(fzaanoe); registroModificado.setOficina(fzacagc); if (!entidad1Nuevo.trim().equals("")) { if (entidad2Nuevo.equals("")) { entidad2Nuevo = "0"; } } int fzanentNuevo; String fzacentNuevo; if (altresNuevo.trim().equals("")) { altresNuevo = ""; fzanentNuevo = Integer.parseInt(entidad2Nuevo); fzacentNuevo = convierteEntidadCastellano(entidad1Nuevo, conn); } else { fzanentNuevo = 0; fzacentNuevo = ""; } if (!fzacentNuevo.equals(fzacent) || fzanentNuevo != fzanent) { registroModificado.setEntidad2(fzanentNuevo); registroModificado.setEntidad1(fzacentNuevo); } else { registroModificado.setEntidad2(0); registroModificado.setEntidad1(""); } if (!comentarioNuevo.trim().equals(comentario.trim())) { registroModificado.setExtracto(comentarioNuevo); } else { registroModificado.setExtracto(""); } registroModificado.setUsuarioModificacion(usuario.toUpperCase()); registroModificado.setNumeroRegistro(fzanume); if (altresNuevo.equals(altres)) { registroModificado.setRemitente(""); } else { registroModificado.setRemitente(altresNuevo); } registroModificado.setMotivo(motivo); modificado = registroModificado.generarModificacion(conn); registroModificado.remove(); } if ((modificado && !motivo.equals("")) || motivo.equals("")) { int afectados = ms.executeUpdate(); if (afectados > 0) { registroActualizado = true; } else { registroActualizado = false; } String remitente = ""; if (!altres.trim().equals("")) { remitente = altres; } else { javax.naming.InitialContext contexto = new javax.naming.InitialContext(); Object ref = contexto.lookup("es.caib.regweb.ValoresHome"); ValoresHome home = (ValoresHome) javax.rmi.PortableRemoteObject.narrow(ref, ValoresHome.class); Valores valor = home.create(); remitente = valor.recuperaRemitenteCastellano(fzacent, fzanent + ""); valor.remove(); } try { Class t = Class.forName("es.caib.regweb.module.PluginHook"); Class[] partypes = { String.class, Integer.class, Integer.class, Integer.class, Integer.class, String.class, String.class, String.class, Integer.class, Integer.class, String.class, Integer.class, String.class }; Object[] params = { "M", new Integer(fzaanoe), new Integer(fzanume), new Integer(fzacagc), new Integer(fzafdoc), remitente, comentario, tipo, new Integer(fzafent), new Integer(fzacagge), fzaproce, new Integer(fzacorg), idioma }; java.lang.reflect.Method metodo = t.getMethod("salida", partypes); metodo.invoke(null, params); } catch (IllegalAccessException iae) { } catch (IllegalArgumentException iae) { } catch (InvocationTargetException ite) { } catch (NullPointerException npe) { } catch (ExceptionInInitializerError eiie) { } catch (NoSuchMethodException nsme) { } catch (SecurityException se) { } catch (LinkageError le) { } catch (ClassNotFoundException le) { } String Stringsss = sss.format(fechaSystem); switch(Stringsss.length()) { case (1): Stringsss = "00" + Stringsss; break; case (2): Stringsss = "0" + Stringsss; break; } int horamili = Integer.parseInt(hhmmss.format(fechaSystem) + Stringsss); logLopdBZSALIDA("UPDATE", (usuario.toUpperCase().length() > 10) ? usuario.toUpperCase().substring(0, 10) : usuario.toUpperCase(), fzahsis, horamili, fzanume, fzaanoe, fzacagc); conn.commit(); } else { registroActualizado = false; errores.put("", "Error inesperat, no s'ha modificat el registre"); throw new RemoteException("Error inesperat, no s'ha modifcat el registre"); } } catch (Exception ex) { System.out.println("Error inesperat " + ex.getMessage()); ex.printStackTrace(); registroActualizado = false; errores.put("", "Error inesperat, no s'ha modificat el registre" + ": " + ex.getClass() + "->" + ex.getMessage()); try { if (conn != null) conn.rollback(); } catch (SQLException sqle) { throw new RemoteException("S'ha produ\357t un error i no s'han pogut tornar enrere els canvis efectuats", sqle); } throw new RemoteException("Error inesperat, no s'ha modifcat el registre", ex); } finally { ToolsBD.closeConn(conn, ms, null); } } | public MsgRecvInfo[] recvMsg(MsgRecvReq msgRecvReq) throws SQLException { String updateSQL = " update dyhikemomessages set receive_id = ?, receive_Time = ? where mo_to =? and receive_id =0 limit 20"; String selectSQL = " select MOMSG_ID,mo_from,mo_to,create_time,mo_content from dyhikemomessages where receive_id =? "; String insertSQL = " insert into t_receive_history select * from dyhikemomessages where receive_id =? "; String deleteSQL = " delete from dyhikemomessages where receive_id =? "; Logger logger = Logger.getLogger(this.getClass()); ArrayList msgInfoList = new ArrayList(); String mo_to = msgRecvReq.getAuthInfo().getUserName(); MsgRecvInfo[] msgInfoArray = new ototype.MsgRecvInfo[0]; String receiveTime = Const.DF.format(new Date()); logger.debug("recvMsgNew1"); Connection conn = null; try { int receiveID = this.getSegquence("receiveID"); conn = this.getJdbcTemplate().getDataSource().getConnection(); conn.setAutoCommit(false); PreparedStatement pstmt = conn.prepareStatement(updateSQL); pstmt.setInt(1, receiveID); pstmt.setString(2, receiveTime); pstmt.setString(3, mo_to); int recordCount = pstmt.executeUpdate(); logger.info(recordCount + " record(s) got"); if (recordCount > 0) { pstmt = conn.prepareStatement(selectSQL); pstmt.setInt(1, receiveID); ResultSet rs = pstmt.executeQuery(); while (rs.next()) { MsgRecvInfo msg = new MsgRecvInfo(); msg.setDestMobile(rs.getString("mo_to")); msg.setRecvAddi(rs.getString("mo_to")); msg.setSendAddi(rs.getString("MO_FROM")); msg.setContent(rs.getString("mo_content")); msg.setRecvDate(rs.getString("create_time")); msgInfoList.add(msg); } msgInfoArray = (MsgRecvInfo[]) msgInfoList.toArray(new MsgRecvInfo[msgInfoList.size()]); pstmt = conn.prepareStatement(insertSQL); pstmt.setInt(1, receiveID); pstmt.execute(); pstmt = conn.prepareStatement(deleteSQL); pstmt.setInt(1, receiveID); pstmt.execute(); conn.commit(); } logger.debug("recvMsgNew2"); return msgInfoArray; } catch (SQLException e) { conn.rollback(); throw e; } finally { if (conn != null) { conn.setAutoCommit(true); conn.close(); } } } | 17,551 |
1 | private static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | private static void copyFile(final File sourceFile, final File destFile) throws IOException { if (!destFile.exists()) { if (!destFile.createNewFile()) { throw new IOException("Destination file cannot be created: " + destFile.getPath()); } } FileChannel source = null; FileChannel destination = null; try { source = new FileInputStream(sourceFile).getChannel(); destination = new FileOutputStream(destFile).getChannel(); destination.transferFrom(source, 0, source.size()); } finally { if (source != null) { source.close(); } if (destination != null) { destination.close(); } } } | 17,552 |
0 | public static final InputStream openStream(Bundle bundle, IPath file, boolean localized) throws IOException { URL url = null; if (!localized) { url = findInPlugin(bundle, file); if (url == null) url = findInFragments(bundle, file); } else { url = FindSupport.find(bundle, file); } if (url != null) return url.openStream(); throw new IOException("Cannot find " + file.toString()); } | public static void main(String[] args) throws Exception { String codecClassname = args[0]; Class<?> codecClass = Class.forName(codecClassname); Configuration conf = new Configuration(); CompressionCodec codec = (CompressionCodec) ReflectionUtils.newInstance(codecClass, conf); Compressor compressor = null; try { compressor = CodecPool.getCompressor(codec); CompressionOutputStream out = codec.createOutputStream(System.out, compressor); IOUtils.copyBytes(System.in, out, 4096, false); out.finish(); } finally { CodecPool.returnCompressor(compressor); } } | 17,553 |
1 | public static String hashPassword(String password) { String passwordHash = ""; try { MessageDigest sha1 = MessageDigest.getInstance("SHA-1"); sha1.reset(); sha1.update(password.getBytes()); Base64 encoder = new Base64(); passwordHash = new String(encoder.encode(sha1.digest())); } catch (NoSuchAlgorithmException e) { LoggerFactory.getLogger(UmsAuthenticationProcessingFilter.class.getClass()).error("Failed to generate password hash: " + e.getMessage()); } return passwordHash; } | public static String encrypt(String unencryptedString) { if (StringUtils.isBlank(unencryptedString)) { throw new IllegalArgumentException("Cannot encrypt a null or empty string"); } MessageDigest md = null; String encryptionAlgorithm = Environment.getValue(Environment.PROP_ENCRYPTION_ALGORITHM); try { md = MessageDigest.getInstance(encryptionAlgorithm); } catch (NoSuchAlgorithmException e) { logger.warn("JDK does not support the " + encryptionAlgorithm + " encryption algorithm. Weaker encryption will be attempted."); } if (md == null) { try { md = MessageDigest.getInstance("SHA-1"); } catch (NoSuchAlgorithmException e) { throw new UnsupportedOperationException("JDK does not support the SHA-1 or SHA-512 encryption algorithms"); } Environment.setValue(Environment.PROP_ENCRYPTION_ALGORITHM, "SHA-1"); try { Environment.saveConfiguration(); } catch (WikiException e) { logger.info("Failure while saving encryption algorithm property", e); } } try { md.update(unencryptedString.getBytes("UTF-8")); byte raw[] = md.digest(); return encrypt64(raw); } catch (GeneralSecurityException e) { logger.error("Encryption failure", e); throw new IllegalStateException("Failure while encrypting value"); } catch (UnsupportedEncodingException e) { throw new IllegalStateException("Unsupporting encoding UTF-8"); } } | 17,554 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public static void copyFile(File source, File dest) throws IOException { FileChannel in = null, out = null; try { in = new FileInputStream(source).getChannel(); out = new FileOutputStream(dest).getChannel(); long size = in.size(); MappedByteBuffer buf = in.map(FileChannel.MapMode.READ_ONLY, 0, size); out.write(buf); } finally { if (in != null) in.close(); if (out != null) out.close(); } } | 17,555 |
0 | public static void writeFromURL(String urlstr, String filename) throws Exception { URL url = new URL(urlstr); InputStream in = url.openStream(); BufferedReader bf = null; StringBuffer sb = new StringBuffer(); try { bf = new BufferedReader(new InputStreamReader(in, "latin1")); String s; while (true) { s = bf.readLine(); if (s != null) { sb.append(s); } else { break; } } } catch (Exception e) { throw e; } finally { bf.close(); } writeRawBytes(sb.toString(), filename); } | public void addStadium(Stadium stadium) throws StadiumException { Connection conn = ConnectionManager.getManager().getConnection(); if (findStadiumBy_N_C(stadium.getName(), stadium.getCity()) != -1) throw new StadiumException("Stadium already exists"); try { PreparedStatement stm = conn.prepareStatement(Statements.INSERT_STADIUM); conn.setAutoCommit(false); stm.setString(1, stadium.getName()); stm.setString(2, stadium.getCity()); stm.executeUpdate(); int id = getMaxId(); TribuneLogic logic = TribuneLogic.getInstance(); for (Tribune trib : stadium.getTribunes()) { int tribuneId = logic.addTribune(trib); if (tribuneId != -1) { stm = conn.prepareStatement(Statements.INSERT_STAD_TRIBUNE); stm.setInt(1, id); stm.setInt(2, tribuneId); stm.executeUpdate(); } } } catch (SQLException e) { try { conn.rollback(); conn.setAutoCommit(true); } catch (SQLException e1) { e1.printStackTrace(); } throw new StadiumException("Adding stadium failed", e); } try { conn.commit(); conn.setAutoCommit(true); } catch (SQLException e) { e.printStackTrace(); } } | 17,556 |
0 | private static Document getDocument(URL url, String applicationVersion, boolean addHeader, int timeOut) throws IOException, ParserConfigurationException, SAXException { HttpURLConnection huc = (HttpURLConnection) url.openConnection(); huc.setConnectTimeout(1000 * timeOut); huc.setRequestMethod("GET"); if (addHeader) { huc.setRequestProperty("JavaPEG-Version", applicationVersion); } huc.connect(); int code = huc.getResponseCode(); if (code != HttpURLConnection.HTTP_OK) { throw new IOException("Invaild HTTP response: " + code); } DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance(); DocumentBuilder db = dbf.newDocumentBuilder(); return db.parse(huc.getInputStream()); } | public static void readDefault() { ClassLoader l = Skeleton.class.getClassLoader(); URL url = l.getResource("weka/core/parser/JFlex/skeleton.default"); if (url == null) { Out.error(ErrorMessages.SKEL_IO_ERROR_DEFAULT); throw new GeneratorException(); } try { InputStreamReader reader = new InputStreamReader(url.openStream()); readSkel(new BufferedReader(reader)); } catch (IOException e) { Out.error(ErrorMessages.SKEL_IO_ERROR_DEFAULT); throw new GeneratorException(); } } | 17,557 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 17,558 |
0 | public String parse(String term) throws OntologyAdaptorException { try { String sUrl = getUrl(term); if (sUrl.length() > 0) { URL url = new URL(sUrl); InputStream in = url.openStream(); StringBuilder sb = new StringBuilder(); BufferedReader r = new BufferedReader(new InputStreamReader(in)); String line = null; while ((line = r.readLine()) != null) { if (sb.length() > 0) { sb.append("\r\n"); } sb.append(line); } return sb.toString(); } else { return ""; } } catch (Exception ex) { throw new OntologyAdaptorException("Convertion to lucene failed.", ex); } } | public static byte[] getURLContent(String urlPath) { HttpURLConnection conn = null; InputStream inStream = null; byte[] buffer = null; try { URL url = new URL(urlPath); HttpURLConnection.setFollowRedirects(false); conn = (HttpURLConnection) url.openConnection(); conn.setRequestMethod("GET"); conn.setDoOutput(true); conn.setUseCaches(false); conn.setDefaultUseCaches(false); conn.setConnectTimeout(10000); conn.setReadTimeout(60000); conn.connect(); int repCode = conn.getResponseCode(); if (repCode == 200) { inStream = conn.getInputStream(); int contentLength = conn.getContentLength(); buffer = getResponseBody(inStream, contentLength); } } catch (Exception ex) { logger.error("", ex); } finally { try { if (inStream != null) { inStream.close(); } if (conn != null) { conn.disconnect(); } } catch (Exception ex) { } } return buffer; } | 17,559 |
0 | public void initURL(URL url, boolean cache) throws IOException { this.url = url; if (cache) { System.out.println(getClass().getName() + ": caching '" + url + "'"); InputStream urlIS = new BufferedInputStream(url.openStream(), 1024 * 30); file = File.createTempFile("_dss_", "_dss_"); file.deleteOnExit(); OutputStream cachedOS = new BufferedOutputStream(new FileOutputStream(file), 1024 * 30); byte[] buf = new byte[1024 * 4]; long cachedBytesCount = 0; int count = 0; while ((count = urlIS.read(buf)) > 0) { cachedOS.write(buf, 0, count); cachedBytesCount += count; } urlIS.close(); cachedOS.flush(); cachedOS.close(); this.cached = true; System.out.println(getClass().getName() + ": cached " + cachedBytesCount + " bytes into '" + file.getAbsolutePath() + "'"); } } | public String loadGeneratorXML() { FTPClient ftp = new FTPClient(); try { int reply; ftp.connect(this.getFolienKonvertierungsServer().getUrl()); System.out.println("Connected to " + this.getFolienKonvertierungsServer().getUrl() + "."); System.out.print(ftp.getReplyString()); reply = ftp.getReplyCode(); if (!FTPReply.isPositiveCompletion(reply)) { ftp.disconnect(); System.err.println("FTP server refused connection."); return null; } if (!ftp.login(this.getFolienKonvertierungsServer().getFtpBenutzer(), this.getFolienKonvertierungsServer().getFtpPasswort())) { System.err.println("FTP server: Login incorrect"); } String path; if (this.getFolienKonvertierungsServer().getDefaultPath().length() > 0) { path = "/" + this.getFolienKonvertierungsServer().getDefaultPath() + "/" + this.getId() + "/"; } else { path = "/" + this.getId() + "/"; } if (!ftp.changeWorkingDirectory(path)) System.err.println("Konnte Verzeichnis nicht wechseln: " + path); System.err.println("Arbeitsverzeichnis: " + ftp.printWorkingDirectory()); ftp.setFileType(FTP.BINARY_FILE_TYPE); ftp.enterLocalPassiveMode(); InputStream inStream = ftp.retrieveFileStream("generator.xml"); if (inStream == null) { System.err.println("Job " + this.getId() + ": Datei generator.xml wurde nicht gefunden"); return null; } BufferedReader in = new BufferedReader(new InputStreamReader(inStream)); generatorXML = ""; String zeile = ""; while ((zeile = in.readLine()) != null) { generatorXML += zeile + "\n"; } in.close(); ftp.logout(); ftp.disconnect(); } catch (IOException e) { System.err.println("Job " + this.getId() + ": Datei generator.xml konnte nicht vom Webserver kopiert werden."); e.printStackTrace(); } catch (Exception e) { System.err.println("Job " + this.getId() + ": Datei generator.xml konnte nicht vom Webserver kopiert werden."); e.printStackTrace(); } finally { if (ftp.isConnected()) { try { ftp.disconnect(); } catch (IOException ioe) { } } } if (generatorXML != null && generatorXML.length() == 0) { generatorXML = null; } return generatorXML; } | 17,560 |
0 | public void removeJarFiles() throws IOException { HashSet<GridNode> nodes = (HashSet) batchTask.returnNodeCollection(); Iterator<GridNode> ic = nodes.iterator(); InetAddress addLocal = InetAddress.getLocalHost(); String hostnameLocal = addLocal.getHostName(); while (ic.hasNext()) { GridNode node = ic.next(); String address = node.getPhysicalAddress(); InetAddress addr = InetAddress.getByName(address); byte[] rawAddr = addr.getAddress(); Map<String, String> attributes = node.getAttributes(); InetAddress hostname = InetAddress.getByAddress(rawAddr); if (hostname.getHostName().equals(hostnameLocal)) continue; String gridPath = attributes.get("GRIDGAIN_HOME"); FTPClient ftp = new FTPClient(); try { String[] usernamePass = inputNodes.get(hostname.getHostName()); ftp.connect(hostname); ftp.login(usernamePass[0], usernamePass[1]); int reply = ftp.getReplyCode(); if (!FTPReply.isPositiveCompletion(reply)) { ftp.disconnect(); System.err.println("FTP server refused connection."); continue; } ftp.login(usernamePass[0], usernamePass[1]); String directory = gridPath + "/libs/ext/"; ftp.changeWorkingDirectory(directory); FTPFile[] fs = ftp.listFiles(); for (FTPFile f : fs) { if (f.isDirectory()) continue; System.out.println(f.getName()); ftp.deleteFile(f.getName()); } ftp.sendCommand("rm *"); ftp.logout(); ftp.disconnect(); } catch (Exception e) { MessageCenter.getMessageCenter(BatchMainSetup.class).error("Problems with the FTP connection." + "A file has not been succesfully transfered", e); e.printStackTrace(); } } } | @Test public void testCascadeTraining() throws IOException { File temp = File.createTempFile("fannj_", ".tmp"); temp.deleteOnExit(); IOUtils.copy(this.getClass().getResourceAsStream("parity8.train"), new FileOutputStream(temp)); Fann fann = new FannShortcut(8, 1); Trainer trainer = new Trainer(fann); float desiredError = .00f; float mse = trainer.cascadeTrain(temp.getPath(), 30, 1, desiredError); assertTrue("" + mse, mse <= desiredError); } | 17,561 |
1 | private void fileCopy(final File src, final File dest) throws IOException { final FileChannel srcChannel = new FileInputStream(src).getChannel(); final FileChannel dstChannel = new FileOutputStream(dest).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } | public static void convertEncoding(File infile, File outfile, String from, String to) throws IOException, UnsupportedEncodingException { InputStream in; if (infile != null) in = new FileInputStream(infile); else in = System.in; OutputStream out; outfile.createNewFile(); if (outfile != null) out = new FileOutputStream(outfile); else out = System.out; if (from == null) from = System.getProperty("file.encoding"); if (to == null) to = "Unicode"; Reader r = new BufferedReader(new InputStreamReader(in, from)); Writer w = new BufferedWriter(new OutputStreamWriter(out, to)); char[] buffer = new char[4096]; int len; while ((len = r.read(buffer)) != -1) w.write(buffer, 0, len); r.close(); w.close(); } | 17,562 |
1 | public static void copyFile(File src, File dst) throws IOException { FileChannel inChannel = new FileInputStream(src).getChannel(); FileChannel outChannel = new FileOutputStream(dst).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | public static void main(String[] args) { if (args.length <= 0) { System.out.println(" *** SQL script generator and executor ***"); System.out.println(" You must specify name of the file with SQL script data"); System.out.println(" Fisrt rows of this file must be:"); System.out.println(" 1) JDBC driver class for your DBMS"); System.out.println(" 2) URL for your database instance"); System.out.println(" 3) user in that database (with administrator priviliges)"); System.out.println(" 4) password of that user"); System.out.println(" Next rows can have: '@' before schema to create,"); System.out.println(" '#' before table to create, '&' before table to insert,"); System.out.println(" '$' before trigger (inverse 'FK on delete cascade') to create,"); System.out.println(" '>' before table to drop, '<' before schema to drop."); System.out.println(" Other rows contain parameters of these actions:"); System.out.println(" for & action each parameter is a list of values,"); System.out.println(" for @ -//- is # acrion, for # -//- is column/constraint "); System.out.println(" definition or $ action. $ syntax to delete from table:"); System.out.println(" fullNameOfTable:itsColInWhereClause=matchingColOfThisTable"); System.out.println(" '!' before row means that it is a comment."); System.out.println(" If some exception is occured, all script is rolled back."); System.out.println(" If you specify 2nd command line argument - file name too -"); System.out.println(" connection will be established but all statements will"); System.out.println(" be saved in that output file and not transmitted to DB"); System.out.println(" If you specify 3nd command line argument - connect_string -"); System.out.println(" connect information will be added to output file"); System.out.println(" in the form 'connect user/password@connect_string'"); System.exit(0); } try { String[] info = new String[4]; BufferedReader reader = new BufferedReader(new FileReader(new File(args[0]))); Writer writer = null; try { for (int i = 0; i < 4; i++) info[i] = reader.readLine(); try { Class.forName(info[0]); Connection connection = DriverManager.getConnection(info[1], info[2], info[3]); SQLScript script = new SQLScript(connection); if (args.length > 1) { writer = new FileWriter(args[1]); if (args.length > 2) writer.write("connect " + info[2] + "/" + info[3] + "@" + args[2] + script.statementTerminator); } try { System.out.println(script.executeScript(reader, writer) + " updates has been performed during script execution"); } catch (SQLException e4) { reader.close(); if (writer != null) writer.close(); System.out.println(" Script execution error: " + e4); } connection.close(); } catch (Exception e3) { reader.close(); if (writer != null) writer.close(); System.out.println(" Connection error: " + e3); } } catch (IOException e2) { System.out.println("Error in file " + args[0]); } } catch (FileNotFoundException e1) { System.out.println("File " + args[0] + " not found"); } } | 17,563 |
1 | @SuppressWarnings("unchecked") protected void displayFreeMarkerResponse(HttpServletRequest request, HttpServletResponse response, String templateName, Map<String, Object> variableMap) throws IOException { Enumeration<String> attrNameEnum = request.getSession().getAttributeNames(); String attrName; while (attrNameEnum.hasMoreElements()) { attrName = attrNameEnum.nextElement(); if (attrName != null && attrName.startsWith(ADMIN4J_SESSION_VARIABLE_PREFIX)) { variableMap.put("Session" + attrName, request.getSession().getAttribute(attrName)); } } variableMap.put("RequestAdmin4jCurrentUri", request.getRequestURI()); Template temp = FreemarkerUtils.createConfiguredTemplate(this.getClass(), templateName); ByteArrayOutputStream outStream = new ByteArrayOutputStream(); try { temp.process(variableMap, new OutputStreamWriter(outStream)); response.setContentLength(outStream.size()); IOUtils.copy(new ByteArrayInputStream(outStream.toByteArray()), response.getOutputStream()); response.getOutputStream().flush(); response.getOutputStream().close(); } catch (Exception e) { throw new Admin4jRuntimeException(e); } } | public void sendResponse(DjdocRequest req, HttpServletResponse res) throws IOException { File file = (File) req.getResult(); InputStream in = null; try { in = new FileInputStream(file); IOUtils.copy(in, res.getOutputStream()); } finally { if (in != null) { in.close(); } } } | 17,564 |
1 | public static void main(String[] args) throws ParseException, FileNotFoundException, IOException { InputStream input = new BufferedInputStream(UpdateLanguages.class.getResourceAsStream("definition_template")); Translator t = new Translator(input, "UTF8"); Node template = Translator.Start(); File langs = new File("support/support/translate/languages"); for (File f : langs.listFiles()) { if (f.getName().endsWith(".lng")) { input = new BufferedInputStream(new FileInputStream(f)); try { Translator.ReInit(input, "UTF8"); } catch (java.lang.NullPointerException e) { new Translator(input, "UTF8"); } Node newFile = Translator.Start(); ArrayList<Addition> additions = new ArrayList<Addition>(); syncKeys(template, newFile, additions); ArrayList<String> fileLines = new ArrayList<String>(); Scanner scanner = new Scanner(new BufferedReader(new FileReader(f))); while (scanner.hasNextLine()) { fileLines.add(scanner.nextLine()); } int offset = 0; for (Addition a : additions) { System.out.println("Key added " + a + " to " + f.getName()); if (a.afterLine < 0 || a.afterLine >= fileLines.size()) { fileLines.add(a.getAddition(0)); } else { fileLines.add(a.afterLine + (offset++) + 1, a.getAddition(0)); } } f.delete(); Writer writer = new BufferedWriter(new FileWriter(f)); for (String s : fileLines) writer.write(s + "\n"); writer.close(); System.out.println("Language " + f.getName() + " had " + additions.size() + " additions"); } } File defFile = new File(langs, "language.lng"); defFile.delete(); defFile.createNewFile(); InputStream copyStream = new BufferedInputStream(UpdateLanguages.class.getResourceAsStream("definition_template")); OutputStream out = new BufferedOutputStream(new FileOutputStream(defFile)); int c = 0; while ((c = copyStream.read()) >= 0) out.write(c); out.close(); System.out.println("Languages updated."); } | public void putFile(CompoundName file, FileInputStream fileInput) throws IOException { File fullDir = new File(REMOTE_BASE_DIR.getCanonicalPath()); for (int i = 0; i < file.size() - 1; i++) fullDir = new File(fullDir, file.get(i)); fullDir.mkdirs(); File outputFile = new File(fullDir, file.get(file.size() - 1)); FileOutputStream outStream = new FileOutputStream(outputFile); for (int byteIn = fileInput.read(); byteIn != -1; byteIn = fileInput.read()) outStream.write(byteIn); fileInput.close(); outStream.close(); } | 17,565 |
0 | @Override protected void doGet(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException { if (log.isTraceEnabled()) { log.trace("doGet(requestURI=" + request.getRequestURI() + ")"); } ServletConfig sc = getServletConfig(); String uriPrefix = request.getContextPath() + "/" + request.getServletPath(); String resUri = request.getRequestURI().substring(uriPrefix.length()); if (log.isTraceEnabled()) { log.trace("Request for resource '" + resUri + "'"); } boolean allowAccess = true; String prefixesSpec = sc.getInitParameter(PARAM_ALLOWED_PREFIXES); if (null != prefixesSpec && prefixesSpec.length() > 0) { String[] prefixes = prefixesSpec.split(";"); allowAccess = false; if (log.isTraceEnabled()) { log.trace("allowedPrefixes specified; checking access"); } for (String prefix : prefixes) { if (log.isTraceEnabled()) { log.trace("Checking resource URI '" + resUri + "' against allowed prefix '" + prefix + "'"); } if (resUri.startsWith(prefix)) { if (log.isTraceEnabled()) { log.trace("Found matching prefix for resource URI '" + resUri + "': '" + prefix + "'"); } allowAccess = true; break; } } } if (!allowAccess) { if (log.isWarnEnabled()) { log.warn("Requested for resource that does not match with" + " allowed prefixes: " + resUri); } response.sendError(HttpServletResponse.SC_FORBIDDEN); return; } String resPrefix = sc.getInitParameter(PARAM_RESOURCE_PREFIX); if (null != resPrefix && resPrefix.length() > 0) { if (log.isTraceEnabled()) { log.trace("resourcePrefix specified: " + resPrefix); } if (resPrefix.endsWith("/")) { resUri = resPrefix + resUri; } else { resUri = resPrefix + "/" + resUri; } } resUri = resUri.replaceAll("\\/\\/+", "/"); if (log.isTraceEnabled()) { log.trace("Qualified (prefixed) resource URI: " + resUri); } String baseClassName = sc.getInitParameter(PARAM_BASE_CLASS); if (null == baseClassName || 0 == baseClassName.length()) { if (log.isTraceEnabled()) { log.trace("No baseClass initialization parameter specified; using default: " + ResourceLoaderServlet.class.getName()); } baseClassName = ResourceLoaderServlet.class.getName(); } else { if (log.isTraceEnabled()) { log.trace("Using baseClass: " + baseClassName); } } Class baseClass; try { baseClass = Class.forName(baseClassName); } catch (ClassNotFoundException ex) { throw new ServletException("Base class '" + baseClassName + "' not found", ex); } URL resUrl = baseClass.getResource(resUri); if (null != resUrl) { if (log.isTraceEnabled()) { log.trace("Sending resource: " + resUrl); } URLConnection urlc = resUrl.openConnection(); response.setContentType(urlc.getContentType()); response.setContentLength(urlc.getContentLength()); response.setStatus(HttpServletResponse.SC_OK); final byte[] buf = new byte[255]; int r = 0; InputStream in = new BufferedInputStream(urlc.getInputStream()); OutputStream out = new BufferedOutputStream(response.getOutputStream()); do { r = in.read(buf, 0, 255); if (r > 0) { out.write(buf, 0, r); } } while (r > 0); in.close(); out.flush(); out.close(); } else { response.sendError(HttpServletResponse.SC_NOT_FOUND, "Resource not found"); } } | public InputStream sendCommandRaw(String command, boolean usePost) throws IOException { try { String fullCommand = prefix + command + fixSuffix(command, suffix); long curGap = System.currentTimeMillis() - lastCommandTime; long delayTime = minimumCommandPeriod - curGap; delay(delayTime); URI uri = new URI(fullCommand); URL url = uri.toURL(); if (trace || traceSends) { System.out.println("Sending--> " + url); } if (logFile != null) { logFile.println("Sending--> " + url); } InputStream is = null; for (int i = 0; i < tryCount; i++) { try { URLConnection urc = url.openConnection(); if (usePost) { if (urc instanceof HttpURLConnection) { ((HttpURLConnection) urc).setRequestMethod("POST"); } } if (getTimeout() != -1) { urc.setReadTimeout(getTimeout()); urc.setConnectTimeout(getTimeout()); } is = new BufferedInputStream(urc.getInputStream()); break; } catch (FileNotFoundException e) { throw e; } catch (IOException e) { System.out.println(name + " Error: " + e + " cmd: " + command); } } lastCommandTime = System.currentTimeMillis(); if (is == null) { System.out.println(name + " retry failure cmd: " + url); throw new IOException("Can't send command"); } return is; } catch (URISyntaxException ex) { throw new IOException("bad uri " + ex); } } | 17,566 |
1 | private synchronized Frame addFrame(INSERT_TYPE type, File source) throws IOException { if (source == null) throw new NullPointerException("Parameter 'source' is null"); if (!source.exists()) throw new IOException("File does not exist: " + source.getAbsolutePath()); if (source.length() <= 0) throw new IOException("File is empty: " + source.getAbsolutePath()); File newLocation = new File(Settings.getPropertyString(ConstantKeys.project_dir), formatFileName(frames_.size())); if (newLocation.compareTo(source) != 0) { switch(type) { case MOVE: source.renameTo(newLocation); break; case COPY: FileChannel inChannel = new FileInputStream(source).getChannel(); FileChannel outChannel = new FileOutputStream(newLocation).getChannel(); inChannel.transferTo(0, inChannel.size(), outChannel); if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); break; } } Frame f = new Frame(newLocation); f.createThumbNail(); frames_.add(f); return f; } | @SuppressWarnings("finally") private void compress(File src) throws IOException { if (this.switches.contains(Switch.test)) return; checkSourceFile(src); if (src.getPath().endsWith(".bz2")) { this.log.println("WARNING: skipping file because it already has .bz2 suffix:").println(src); return; } final File dst = new File(src.getPath() + ".bz2").getAbsoluteFile(); if (!checkDestFile(dst)) return; FileChannel inChannel = null; FileChannel outChannel = null; FileOutputStream fileOut = null; BZip2OutputStream bzOut = null; FileLock inLock = null; FileLock outLock = null; try { inChannel = new FileInputStream(src).getChannel(); final long inSize = inChannel.size(); inLock = inChannel.tryLock(0, inSize, true); if (inLock == null) throw error("source file locked by another process: " + src); fileOut = new FileOutputStream(dst); outChannel = fileOut.getChannel(); bzOut = new BZip2OutputStream( new BufferedXOutputStream(fileOut, 8192), Math.min( (this.blockSize == -1) ? BZip2OutputStream.MAX_BLOCK_SIZE : this.blockSize, BZip2OutputStream.chooseBlockSize(inSize) ) ); outLock = outChannel.tryLock(); if (outLock == null) throw error("destination file locked by another process: " + dst); final boolean showProgress = this.switches.contains(Switch.showProgress); long pos = 0; int progress = 0; if (showProgress || this.verbose) { this.log.print("source: " + src).print(": size=").println(inSize); this.log.println("target: " + dst); } while (true) { final long maxStep = showProgress ? Math.max(8192, (inSize - pos) / MAX_PROGRESS) : (inSize - pos); if (maxStep <= 0) { if (showProgress) { for (int i = progress; i < MAX_PROGRESS; i++) this.log.print('#'); this.log.println(" done"); } break; } else { final long step = inChannel.transferTo(pos, maxStep, bzOut); if ((step == 0) && (inChannel.size() != inSize)) throw error("file " + src + " has been modified concurrently by another process"); pos += step; if (showProgress) { final double p = (double) pos / (double) inSize; final int newProgress = (int) (MAX_PROGRESS * p); for (int i = progress; i < newProgress; i++) this.log.print('#'); progress = newProgress; } } } inLock.release(); inChannel.close(); bzOut.closeInstance(); final long outSize = outChannel.position(); outChannel.truncate(outSize); outLock.release(); fileOut.close(); if (this.verbose) { final double ratio = (inSize == 0) ? (outSize * 100) : ((double) outSize / (double) inSize); this.log.print("raw size: ").print(inSize) .print("; compressed size: ").print(outSize) .print("; compression ratio: ").print(ratio).println('%'); } if (!this.switches.contains(Switch.keep)) { if (!src.delete()) throw error("unable to delete sourcefile: " + src); } } catch (final IOException ex) { IO.tryClose(inChannel); IO.tryClose(bzOut); IO.tryClose(fileOut); IO.tryRelease(inLock); IO.tryRelease(outLock); try { this.log.println(); } finally { throw ex; } } } | 17,567 |
0 | private String searchMetabolite(String name) { { BufferedReader in = null; try { String urlName = name; URL url = new URL(urlName); in = new BufferedReader(new InputStreamReader(url.openStream())); String inputLine; Boolean isMetabolite = false; while ((inputLine = in.readLine()) != null) { if (inputLine.contains("Metabolite</h1>")) { isMetabolite = true; } if (inputLine.contains("<td><a href=\"/Metabolites/") && isMetabolite) { String metName = inputLine.substring(inputLine.indexOf("/Metabolites/") + 13, inputLine.indexOf("aspx\" target") + 4); return "http://gmd.mpimp-golm.mpg.de/Metabolites/" + metName; } } in.close(); return name; } catch (IOException ex) { Logger.getLogger(GetGolmIDsTask.class.getName()).log(Level.SEVERE, null, ex); return null; } } } | public static void main(String args[]) { if (args.length < 1) { System.err.println("usage: java copyURL URL [LocalFile]"); System.exit(1); } try { URL url = new URL(args[0]); System.out.println("Opening connection to " + args[0] + "..."); URLConnection urlC = url.openConnection(); InputStream is = url.openStream(); System.out.print("Copying resource (type: " + urlC.getContentType()); Date date = new Date(urlC.getLastModified()); System.out.flush(); FileOutputStream fos = null; if (args.length < 2) { String localFile = null; StringTokenizer st = new StringTokenizer(url.getFile(), "/"); while (st.hasMoreTokens()) localFile = st.nextToken(); fos = new FileOutputStream(localFile); } else fos = new FileOutputStream(args[1]); int oneChar, count = 0; while ((oneChar = is.read()) != -1) { fos.write(oneChar); count++; } is.close(); fos.close(); System.out.println(count + " byte(s) copied"); } catch (MalformedURLException e) { System.err.println(e.toString()); } catch (IOException e) { System.err.println(e.toString()); } } | 17,568 |
0 | public <E extends Exception> void doWithConnection(String httpAddress, ICallableWithParameter<Void, URLConnection, E> toDo) throws E, ConnectionException { URLConnection connection; try { URL url = new URL(httpAddress); connection = url.openConnection(); } catch (MalformedURLException e) { throw new ConnectionException("Connecting to " + httpAddress + " got", e); } catch (IOException e) { throw new ConnectionException("Connecting to " + httpAddress + " got", e); } authenticationHandler.doWithProxyAuthentication(connection, toDo); } | private void alterarCategoria(Categoria cat) throws Exception { Connection conn = null; PreparedStatement ps = null; try { conn = C3P0Pool.getConnection(); String sql = "UPDATE categoria SET nome_categoria = ? where id_categoria = ?"; ps = conn.prepareStatement(sql); ps.setString(1, cat.getNome()); ps.setInt(2, cat.getCodigo()); ps.executeUpdate(); conn.commit(); } catch (Exception e) { if (conn != null) conn.rollback(); throw e; } finally { close(conn, ps); } } | 17,569 |
1 | private File prepareFileForUpload(File source, String s3key) throws IOException { File tmp = File.createTempFile("dirsync", ".tmp"); tmp.deleteOnExit(); InputStream in = null; OutputStream out = null; try { in = new FileInputStream(source); out = new DeflaterOutputStream(new CryptOutputStream(new FileOutputStream(tmp), cipher, getDataEncryptionKey())); IOUtils.copy(in, out); in.close(); out.close(); return tmp; } finally { IOUtils.closeQuietly(in); IOUtils.closeQuietly(out); } } | public void copyFile(File sourceFile, File destFile) throws IOException { if (!destFile.exists()) { destFile.createNewFile(); } FileChannel source = null; FileChannel destination = null; try { source = new FileInputStream(sourceFile).getChannel(); destination = new FileOutputStream(destFile).getChannel(); destination.transferFrom(source, 0, source.size()); } finally { if (source != null) { source.close(); } if (destination != null) { destination.close(); } } } | 17,570 |
1 | public static void main(String[] args) throws IOException { String uri = "hdfs://localhost:8020/user/leeing/maxtemp/sample.txt"; Configuration conf = new Configuration(); FileSystem fs = FileSystem.get(URI.create(uri), conf); InputStream in = null; try { in = fs.open(new Path(uri)); IOUtils.copyBytes(in, System.out, 8192, false); } finally { IOUtils.closeStream(in); } } | public static void copyFile(File source, String target) throws FileNotFoundException, IOException { File fout = new File(target); fout.mkdirs(); fout.delete(); fout = new File(target); FileChannel in = new FileInputStream(source).getChannel(); FileChannel out = new FileOutputStream(target).getChannel(); in.transferTo(0, in.size(), out); in.close(); out.close(); } | 17,571 |
1 | public void init(String[] arguments) { if (arguments.length < 1) { printHelp(); return; } String[] valid_args = new String[] { "device*", "d*", "help", "h", "speed#", "s#", "file*", "f*", "gpsd*", "nmea", "n", "garmin", "g", "sirf", "i", "rawdata", "downloadtracks", "downloadwaypoints", "downloadroutes", "deviceinfo", "printposonce", "printpos", "p", "printalt", "printspeed", "printheading", "printsat", "template*", "outfile*", "screenshot*", "printdefaulttemplate", "helptemplate", "nmealogfile*", "l", "uploadtracks", "uploadroutes", "uploadwaypoints", "infile*" }; CommandArguments args = null; try { args = new CommandArguments(arguments, valid_args); } catch (CommandArgumentException cae) { System.err.println("Invalid arguments: " + cae.getMessage()); printHelp(); return; } String filename = null; String serial_port_name = null; boolean gpsd = false; String gpsd_host = "localhost"; int gpsd_port = 2947; int serial_port_speed = -1; GPSDataProcessor gps_data_processor; String nmea_log_file = null; if (args.isSet("help") || (args.isSet("h"))) { printHelp(); return; } if (args.isSet("helptemplate")) { printHelpTemplate(); } if (args.isSet("printdefaulttemplate")) { System.out.println(DEFAULT_TEMPLATE); } if (args.isSet("device")) { serial_port_name = (String) args.getValue("device"); } else if (args.isSet("d")) { serial_port_name = (String) args.getValue("d"); } if (args.isSet("speed")) { serial_port_speed = ((Integer) args.getValue("speed")).intValue(); } else if (args.isSet("s")) { serial_port_speed = ((Integer) args.getValue("s")).intValue(); } if (args.isSet("file")) { filename = (String) args.getValue("file"); } else if (args.isSet("f")) { filename = (String) args.getValue("f"); } if (args.isSet("gpsd")) { gpsd = true; String gpsd_host_port = (String) args.getValue("gpsd"); if (gpsd_host_port != null && gpsd_host_port.length() > 0) { String[] params = gpsd_host_port.split(":"); gpsd_host = params[0]; if (params.length > 0) { gpsd_port = Integer.parseInt(params[1]); } } } if (args.isSet("garmin") || args.isSet("g")) { gps_data_processor = new GPSGarminDataProcessor(); serial_port_speed = 9600; if (filename != null) { System.err.println("ERROR: Cannot read garmin data from file, only serial port supported!"); return; } } else if (args.isSet("sirf") || args.isSet("i")) { gps_data_processor = new GPSSirfDataProcessor(); serial_port_speed = 19200; if (filename != null) { System.err.println("ERROR: Cannot read sirf data from file, only serial port supported!"); return; } } else { gps_data_processor = new GPSNmeaDataProcessor(); serial_port_speed = 4800; } if (args.isSet("nmealogfile") || (args.isSet("l"))) { if (args.isSet("nmealogfile")) nmea_log_file = args.getStringValue("nmealogfile"); else nmea_log_file = args.getStringValue("l"); } if (args.isSet("rawdata")) { gps_data_processor.addGPSRawDataListener(new GPSRawDataListener() { public void gpsRawDataReceived(char[] data, int offset, int length) { System.out.println("RAWLOG: " + new String(data, offset, length)); } }); } GPSDevice gps_device; Hashtable environment = new Hashtable(); if (filename != null) { environment.put(GPSFileDevice.PATH_NAME_KEY, filename); gps_device = new GPSFileDevice(); } else if (gpsd) { environment.put(GPSNetworkGpsdDevice.GPSD_HOST_KEY, gpsd_host); environment.put(GPSNetworkGpsdDevice.GPSD_PORT_KEY, new Integer(gpsd_port)); gps_device = new GPSNetworkGpsdDevice(); } else { if (serial_port_name != null) environment.put(GPSSerialDevice.PORT_NAME_KEY, serial_port_name); if (serial_port_speed > -1) environment.put(GPSSerialDevice.PORT_SPEED_KEY, new Integer(serial_port_speed)); gps_device = new GPSSerialDevice(); } try { gps_device.init(environment); gps_data_processor.setGPSDevice(gps_device); gps_data_processor.open(); gps_data_processor.addProgressListener(this); if ((nmea_log_file != null) && (nmea_log_file.length() > 0)) { gps_data_processor.addGPSRawDataListener(new GPSRawDataFileLogger(nmea_log_file)); } if (args.isSet("deviceinfo")) { System.out.println("GPSInfo:"); String[] infos = gps_data_processor.getGPSInfo(); for (int index = 0; index < infos.length; index++) { System.out.println(infos[index]); } } if (args.isSet("screenshot")) { FileOutputStream out = new FileOutputStream((String) args.getValue("screenshot")); BufferedImage image = gps_data_processor.getScreenShot(); ImageIO.write(image, "PNG", out); } boolean print_waypoints = args.isSet("downloadwaypoints"); boolean print_routes = args.isSet("downloadroutes"); boolean print_tracks = args.isSet("downloadtracks"); if (print_waypoints || print_routes || print_tracks) { VelocityContext context = new VelocityContext(); if (print_waypoints) { List waypoints = gps_data_processor.getWaypoints(); if (waypoints != null) context.put("waypoints", waypoints); else print_waypoints = false; } if (print_tracks) { List tracks = gps_data_processor.getTracks(); if (tracks != null) context.put("tracks", tracks); else print_tracks = false; } if (print_routes) { List routes = gps_data_processor.getRoutes(); if (routes != null) context.put("routes", routes); else print_routes = false; } context.put("printwaypoints", new Boolean(print_waypoints)); context.put("printtracks", new Boolean(print_tracks)); context.put("printroutes", new Boolean(print_routes)); Writer writer; Reader reader; if (args.isSet("template")) { String template_file = (String) args.getValue("template"); reader = new FileReader(template_file); } else { reader = new StringReader(DEFAULT_TEMPLATE); } if (args.isSet("outfile")) writer = new FileWriter((String) args.getValue("outfile")); else writer = new OutputStreamWriter(System.out); addDefaultValuesToContext(context); boolean result = printTemplate(context, reader, writer); } boolean read_waypoints = (args.isSet("uploadwaypoints") && args.isSet("infile")); boolean read_routes = (args.isSet("uploadroutes") && args.isSet("infile")); boolean read_tracks = (args.isSet("uploadtracks") && args.isSet("infile")); if (read_waypoints || read_routes || read_tracks) { ReadGPX reader = new ReadGPX(); String in_file = (String) args.getValue("infile"); reader.parseFile(in_file); if (read_waypoints) gps_data_processor.setWaypoints(reader.getWaypoints()); if (read_routes) gps_data_processor.setRoutes(reader.getRoutes()); if (read_tracks) gps_data_processor.setTracks(reader.getTracks()); } if (args.isSet("printposonce")) { GPSPosition pos = gps_data_processor.getGPSPosition(); System.out.println("Current Position: " + pos); } if (args.isSet("printpos") || args.isSet("p")) { gps_data_processor.addGPSDataChangeListener(GPSDataProcessor.LOCATION, this); } if (args.isSet("printalt")) { gps_data_processor.addGPSDataChangeListener(GPSDataProcessor.ALTITUDE, this); } if (args.isSet("printspeed")) { gps_data_processor.addGPSDataChangeListener(GPSDataProcessor.SPEED, this); } if (args.isSet("printheading")) { gps_data_processor.addGPSDataChangeListener(GPSDataProcessor.HEADING, this); } if (args.isSet("printsat")) { gps_data_processor.addGPSDataChangeListener(GPSDataProcessor.NUMBER_SATELLITES, this); gps_data_processor.addGPSDataChangeListener(GPSDataProcessor.SATELLITE_INFO, this); } if (args.isSet("printpos") || args.isSet("p") || args.isSet("printalt") || args.isSet("printsat") || args.isSet("printspeed") || args.isSet("printheading")) { gps_data_processor.startSendPositionPeriodically(1000L); try { System.in.read(); } catch (IOException ignore) { } } gps_data_processor.close(); } catch (GPSException e) { e.printStackTrace(); } catch (FileNotFoundException fnfe) { System.err.println("ERROR: File not found: " + fnfe.getMessage()); } catch (IOException ioe) { System.err.println("ERROR: I/O Error: " + ioe.getMessage()); } } | @Override protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { final Map<String, String> fileAttr = new HashMap<String, String>(); boolean download = false; String dw = req.getParameter("d"); if (StringUtils.isNotEmpty(dw) && StringUtils.equals(dw, "true")) { download = true; } final ByteArrayOutputStream imageOutputStream = new ByteArrayOutputStream(DEFAULT_CONTENT_LENGTH_SIZE); InputStream imageInputStream = null; try { imageInputStream = getImageAsStream(req, fileAttr); IOUtils.copy(imageInputStream, imageOutputStream); resp.setHeader("Cache-Control", "no-store"); resp.setHeader("Pragma", "no-cache"); resp.setDateHeader("Expires", 0); resp.setContentType(fileAttr.get("mimetype")); if (download) { resp.setHeader("Content-Disposition", "attachment; filename=\"" + fileAttr.get("filename") + "\""); } final ServletOutputStream responseOutputStream = resp.getOutputStream(); responseOutputStream.write(imageOutputStream.toByteArray()); responseOutputStream.flush(); responseOutputStream.close(); } catch (Exception e) { e.printStackTrace(); resp.setContentType("text/html"); resp.getWriter().println("<h1>Sorry... cannot find document</h1>"); } finally { IOUtils.closeQuietly(imageInputStream); IOUtils.closeQuietly(imageOutputStream); } } | 17,572 |
0 | public <T extends FetionResponse> T executeAction(FetionAction<T> fetionAction) throws IOException { URL url = new URL(fetionAction.getProtocol().name().toLowerCase() + "://" + fetionUrl + fetionAction.getRequestData()); URLConnection connection = url.openConnection(); InputStream in = connection.getInputStream(); byte[] buffer = new byte[10240]; ByteArrayOutputStream bout = new ByteArrayOutputStream(); int read = 0; while ((read = in.read(buffer)) > 0) { bout.write(buffer, 0, read); } return fetionAction.processResponse(parseRawResponse(bout.toByteArray())); } | public static void copyFile(File file, String pathExport) throws IOException { File out = new File(pathExport); FileChannel sourceChannel = new FileInputStream(file).getChannel(); FileChannel destinationChannel = new FileOutputStream(out).getChannel(); sourceChannel.transferTo(0, sourceChannel.size(), destinationChannel); sourceChannel.close(); destinationChannel.close(); } | 17,573 |
1 | public static Document validateXml(File messageFile, URL inputUrl, String[] catalogs) throws IOException, ParserConfigurationException, Exception, SAXException, FileNotFoundException { InputSource source = new InputSource(inputUrl.openStream()); Document logDoc = DomUtil.getNewDom(); XMLReader reader = SaxUtil.getXMLFormatLoggingXMLReader(log, logDoc, true, catalogs); reader.parse(source); InputStream logStream = DomUtil.serializeToInputStream(logDoc, "utf-8"); System.out.println("Creating message file \"" + messageFile.getAbsolutePath() + "\"..."); OutputStream fos = new FileOutputStream(messageFile); IOUtils.copy(logStream, fos); return logDoc; } | @Override protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { resp.addHeader("Cache-Control", "max-age=" + Constants.HTTP_CACHE_SECONDS); String uuid = req.getRequestURI().substring(req.getRequestURI().indexOf(Constants.SERVLET_THUMBNAIL_PREFIX) + Constants.SERVLET_THUMBNAIL_PREFIX.length() + 1); if (uuid != null && !"".equals(uuid)) { resp.setContentType("image/jpeg"); StringBuffer sb = new StringBuffer(); sb.append(config.getFedoraHost()).append("/objects/").append(uuid).append("/datastreams/IMG_THUMB/content"); InputStream is = null; if (!Constants.MISSING.equals(uuid)) { is = RESTHelper.get(sb.toString(), config.getFedoraLogin(), config.getFedoraPassword(), true); } else { is = new FileInputStream(new File("images/other/file_not_found.png")); } if (is == null) { return; } ServletOutputStream os = resp.getOutputStream(); try { IOUtils.copyStreams(is, os); } catch (IOException e) { } finally { os.flush(); if (is != null) { try { is.close(); } catch (IOException e) { } finally { is = null; } } } resp.setStatus(200); } else { resp.setStatus(404); } } | 17,574 |
1 | public boolean copyFile(File source, File dest) { try { FileReader in = new FileReader(source); FileWriter out = new FileWriter(dest); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); return true; } catch (Exception e) { return false; } } | public static void main(String[] args) throws Exception { String uri = args[0]; Configuration conf = new Configuration(); FileSystem fs = FileSystem.get(URI.create(uri), conf); FSDataInputStream in = null; try { in = fs.open(new Path(uri)); IOUtils.copyBytes(in, System.out, 4096, false); in.seek(0); IOUtils.copyBytes(in, System.out, 4096, false); } finally { IOUtils.closeStream(in); } } | 17,575 |
1 | public static String encryptPassword(String password) throws PasswordException { String hash = null; if (password != null && !password.equals("")) { try { MessageDigest md = MessageDigest.getInstance("SHA"); md.update(password.getBytes("UTF-8")); byte raw[] = md.digest(); hash = (new BASE64Encoder()).encode(raw); } catch (NoSuchAlgorithmException nsae) { throw new PasswordException(PasswordException.SYSTEM_ERROR); } catch (UnsupportedEncodingException uee) { throw new PasswordException(PasswordException.SYSTEM_ERROR); } } return hash; } | public String calculateDigest(String str) { StringBuffer s = new StringBuffer(); try { MessageDigest md = MessageDigest.getInstance("SHA-1"); md.update(str.getBytes()); byte[] digest = md.digest(); for (byte d : digest) { s.append(Integer.toHexString((int) (d & 0xff))); } } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } return s.toString(); } | 17,576 |
1 | private void zip(FileHolder fileHolder, int zipCompressionLevel) { byte[] buffer = new byte[BUFFER_SIZE]; int bytes_read; if (fileHolder.selectedFileList.size() == 0) { return; } File zipDestFile = new File(fileHolder.destFiles[0]); try { ZipOutputStream outStream = new ZipOutputStream(new FileOutputStream(zipDestFile)); for (int i = 0; i < fileHolder.selectedFileList.size(); i++) { File selectedFile = fileHolder.selectedFileList.get(i); super.currentObjBeingProcessed = selectedFile; this.inStream = new FileInputStream(selectedFile); ZipEntry entry = new ZipEntry(selectedFile.getName()); outStream.setLevel(zipCompressionLevel); outStream.putNextEntry(entry); while ((bytes_read = this.inStream.read(buffer)) != -1) { outStream.write(buffer, 0, bytes_read); } outStream.closeEntry(); this.inStream.close(); } outStream.close(); } catch (IOException e) { errEntry.setThrowable(e); errEntry.setAppContext("gzip()"); errEntry.setAppMessage("Error zipping: " + zipDestFile); logger.logError(errEntry); } return; } | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | 17,577 |
1 | public static void main(String[] args) { if (args.length <= 0) { System.out.println(" *** SQL script generator and executor ***"); System.out.println(" You must specify name of the file with SQL script data"); System.out.println(" Fisrt rows of this file must be:"); System.out.println(" 1) JDBC driver class for your DBMS"); System.out.println(" 2) URL for your database instance"); System.out.println(" 3) user in that database (with administrator priviliges)"); System.out.println(" 4) password of that user"); System.out.println(" Next rows can have: '@' before schema to create,"); System.out.println(" '#' before table to create, '&' before table to insert,"); System.out.println(" '$' before trigger (inverse 'FK on delete cascade') to create,"); System.out.println(" '>' before table to drop, '<' before schema to drop."); System.out.println(" Other rows contain parameters of these actions:"); System.out.println(" for & action each parameter is a list of values,"); System.out.println(" for @ -//- is # acrion, for # -//- is column/constraint "); System.out.println(" definition or $ action. $ syntax to delete from table:"); System.out.println(" fullNameOfTable:itsColInWhereClause=matchingColOfThisTable"); System.out.println(" '!' before row means that it is a comment."); System.out.println(" If some exception is occured, all script is rolled back."); System.out.println(" If you specify 2nd command line argument - file name too -"); System.out.println(" connection will be established but all statements will"); System.out.println(" be saved in that output file and not transmitted to DB"); System.out.println(" If you specify 3nd command line argument - connect_string -"); System.out.println(" connect information will be added to output file"); System.out.println(" in the form 'connect user/password@connect_string'"); System.exit(0); } try { String[] info = new String[4]; BufferedReader reader = new BufferedReader(new FileReader(new File(args[0]))); Writer writer = null; try { for (int i = 0; i < 4; i++) info[i] = reader.readLine(); try { Class.forName(info[0]); Connection connection = DriverManager.getConnection(info[1], info[2], info[3]); SQLScript script = new SQLScript(connection); if (args.length > 1) { writer = new FileWriter(args[1]); if (args.length > 2) writer.write("connect " + info[2] + "/" + info[3] + "@" + args[2] + script.statementTerminator); } try { System.out.println(script.executeScript(reader, writer) + " updates has been performed during script execution"); } catch (SQLException e4) { reader.close(); if (writer != null) writer.close(); System.out.println(" Script execution error: " + e4); } connection.close(); } catch (Exception e3) { reader.close(); if (writer != null) writer.close(); System.out.println(" Connection error: " + e3); } } catch (IOException e2) { System.out.println("Error in file " + args[0]); } } catch (FileNotFoundException e1) { System.out.println("File " + args[0] + " not found"); } } | @Override protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { String uuid = req.getParameterValues(Constants.PARAM_UUID)[0]; String datastream = null; if (req.getRequestURI().contains(Constants.SERVLET_DOWNLOAD_FOXML_PREFIX)) { resp.addHeader("Content-Disposition", "attachment; ContentType = \"text/xml\"; filename=\"" + uuid + "_server_version.foxml\""); } else { datastream = req.getParameterValues(Constants.PARAM_DATASTREAM)[0]; resp.addHeader("Content-Disposition", "attachment; ContentType = \"text/xml\"; filename=\"" + uuid + "_server_version_" + datastream + ".xml\""); } ServletOutputStream os = resp.getOutputStream(); if (uuid != null && !"".equals(uuid)) { try { StringBuffer sb = new StringBuffer(); if (req.getRequestURI().contains(Constants.SERVLET_DOWNLOAD_FOXML_PREFIX)) { sb.append(config.getFedoraHost()).append("/objects/").append(uuid).append("/objectXML"); } else if (req.getRequestURI().contains(Constants.SERVLET_DOWNLOAD_DATASTREAMS_PREFIX)) { sb.append(config.getFedoraHost()).append("/objects/").append(uuid).append("/datastreams/").append(datastream).append("/content"); } InputStream is = RESTHelper.get(sb.toString(), config.getFedoraLogin(), config.getFedoraPassword(), false); if (is == null) { return; } try { if (req.getRequestURI().contains(Constants.SERVLET_DOWNLOAD_DATASTREAMS_PREFIX)) { os.write(Constants.XML_HEADER_WITH_BACKSLASHES.getBytes()); } IOUtils.copyStreams(is, os); } catch (IOException e) { resp.setStatus(HttpURLConnection.HTTP_NOT_FOUND); LOGGER.error("Problem with downloading foxml.", e); } finally { os.flush(); if (is != null) { try { is.close(); } catch (IOException e) { resp.setStatus(HttpURLConnection.HTTP_NOT_FOUND); LOGGER.error("Problem with downloading foxml.", e); } finally { is = null; } } } } catch (IOException e) { resp.setStatus(HttpURLConnection.HTTP_NOT_FOUND); LOGGER.error("Problem with downloading foxml.", e); } finally { os.flush(); } } } | 17,578 |
1 | private byte[] hash(String toHash) { try { MessageDigest md5 = MessageDigest.getInstance("MD5", "BC"); md5.update(toHash.getBytes("ISO-8859-1")); return md5.digest(); } catch (Exception ex) { ex.printStackTrace(); return null; } } | private String protectMarkup(String content, String markupRegex, String replaceSource, String replaceTarget) { Matcher matcher = Pattern.compile(markupRegex, Pattern.MULTILINE | Pattern.DOTALL).matcher(content); StringBuffer result = new StringBuffer(); while (matcher.find()) { String protectedMarkup = matcher.group(); protectedMarkup = protectedMarkup.replaceAll(replaceSource, replaceTarget); try { MessageDigest digest = MessageDigest.getInstance("MD5"); digest.reset(); digest.update(protectedMarkup.getBytes("UTF-8")); String hash = bytesToHash(digest.digest()); matcher.appendReplacement(result, hash); c_protectionMap.put(hash, protectedMarkup); m_hashList.add(hash); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } catch (UnsupportedEncodingException e) { e.printStackTrace(); } } matcher.appendTail(result); return result.toString(); } | 17,579 |
1 | public void copyFileFromLocalMachineToRemoteMachine(InputStream source, File destination) throws Exception { String fileName = destination.getPath(); File f = new File(getFtpServerHome(), "" + System.currentTimeMillis()); f.deleteOnExit(); org.apache.commons.io.IOUtils.copy(source, new FileOutputStream(f)); remoteHostClient.setAscii(isAscii()); remoteHostClient.setPromptOn(isPrompt()); remoteHostClient.copyFileFromLocalMachineToRemoteClient(f.getName(), fileName); } | public void dispatch(com.sun.star.util.URL aURL, com.sun.star.beans.PropertyValue[] aArguments) { if (aURL.Protocol.compareTo("org.openoffice.oosvn.oosvn:") == 0) { OoDocProperty docProperty = getProperty(); settings.setCancelFired(false); if (aURL.Path.compareTo("svnUpdate") == 0) { try { try { settings = getSerializedSettings(docProperty); } catch (NullPointerException ex) { new DialogSettings(new javax.swing.JFrame(), true, settings).setVisible(true); if (settings.getCancelFired()) return; new DialogFileChooser(new javax.swing.JFrame(), true, settings).setVisible(true); if (settings.getCancelFired()) return; } catch (Exception ex) { error("Error getting settings", ex); return; } Object[][] logs = getLogs(settings); long checkVersion = -1; if (logs.length == 0) { error("Sorry, the specified repository is empty."); return; } new DialogSVNHistory(new javax.swing.JFrame(), true, settings, logs).setVisible(true); if (settings.getCancelFired()) return; File tempDir = new File(settings.getCheckoutPath() + svnWorker.tempDir); if (tempDir.exists()) { if (deleteFileDir(tempDir) == false) { error("Error while deleting temporary checkout dir."); } } svnWorker.checkout(settings); File[] tempFiles = tempDir.listFiles(); File anyOdt = null; File thisOdt = null; for (int j = 0; j < tempFiles.length; j++) { if (tempFiles[j].toString().endsWith(".odt")) anyOdt = tempFiles[j]; if (tempFiles[j].toString().equals(settings.getCheckoutDoc()) && settings.getCheckoutDoc() != null) thisOdt = tempFiles[j]; } if (thisOdt != null) anyOdt = thisOdt; String url; if (settings.getCheckoutDoc() == null || !settings.getCheckoutDoc().equals(anyOdt.getName())) { File newOdt = new File(settings.getCheckoutPath() + "/" + anyOdt.getName()); if (newOdt.exists()) newOdt.delete(); anyOdt.renameTo(newOdt); File svnInfo = new File(settings.getCheckoutPath() + svnWorker.tempDir + "/.svn"); File newSvnInfo = new File(settings.getCheckoutPath() + "/.svn"); if (newSvnInfo.exists()) { if (deleteFileDir(newSvnInfo) == false) { error("Error while deleting temporary checkout dir."); } } url = "file:///" + newOdt.getPath().replace("\\", "/"); svnInfo.renameTo(newSvnInfo); anyOdt = newOdt; loadDocumentFromUrl(url); settings.setCheckoutDoc(anyOdt.getName()); try { settings.serializeOut(); } catch (Exception ex) { error("Error occured when re-newing settings.", ex); } } else { try { settings.serializeOut(); } catch (Exception ex) { error("Error occured when re-newing settings.", ex); } url = "file:///" + anyOdt.getPath().replace("\\", "/"); XDispatchProvider xDispatchProvider = (XDispatchProvider) UnoRuntime.queryInterface(XDispatchProvider.class, m_xFrame); PropertyValue property[] = new PropertyValue[1]; property[0] = new PropertyValue(); property[0].Name = "URL"; property[0].Value = url; XMultiServiceFactory xMSF = createProvider(); Object objDispatchHelper = m_xServiceManager.createInstanceWithContext("com.sun.star.frame.DispatchHelper", m_xContext); XDispatchHelper xDispatchHelper = (XDispatchHelper) UnoRuntime.queryInterface(XDispatchHelper.class, objDispatchHelper); xDispatchHelper.executeDispatch(xDispatchProvider, ".uno:CompareDocuments", "", 0, property); } } catch (Exception ex) { error(ex); } return; } if (aURL.Path.compareTo("svnCommit") == 0) { try { try { settings = getSerializedSettings(docProperty); } catch (Exception ex) { error("Error getting settings", ex); return; } Collection logs = svnWorker.getLogs(settings); long headRevision = svnWorker.getHeadRevisionNumber(logs); long committedRevision = -1; new DialogCommitMessage(new javax.swing.JFrame(), true, settings).setVisible(true); if (settings.getCancelFired()) return; try { settings.serializeOut(); } catch (Exception ex) { error("Error occured when re-newing settings.", ex); } if (headRevision == 0) { File impDir = new File(settings.getCheckoutPath() + svnWorker.tempDir + "/.import"); if (impDir.exists()) if (deleteFileDir(impDir) == false) { error("Error while creating temporary import directory."); return; } if (!impDir.mkdirs()) { error("Error while creating temporary import directory."); return; } File impFile = new File(settings.getCheckoutPath() + svnWorker.tempDir + "/.import/" + settings.getCheckoutDoc()); try { FileChannel srcChannel = new FileInputStream(settings.getCheckoutPath() + "/" + settings.getCheckoutDoc()).getChannel(); FileChannel dstChannel = new FileOutputStream(impFile).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } catch (Exception ex) { error("Error while importing file", ex); return; } final String checkoutPath = settings.getCheckoutPath(); try { settings.setCheckoutPath(impDir.toString()); committedRevision = svnWorker.importDirectory(settings, false).getNewRevision(); } catch (Exception ex) { settings.setCheckoutPath(checkoutPath); error("Error while importing file", ex); return; } settings.setCheckoutPath(checkoutPath); if (impDir.exists()) if (deleteFileDir(impDir) == false) error("Error while creating temporary import directory."); try { File newSvnInfo = new File(settings.getCheckoutPath() + "/.svn"); if (newSvnInfo.exists()) { if (deleteFileDir(newSvnInfo) == false) { error("Error while deleting temporary checkout dir."); } } File tempDir = new File(settings.getCheckoutPath() + svnWorker.tempDir); if (tempDir.exists()) { if (deleteFileDir(tempDir) == false) { error("Error while deleting temporary checkout dir."); } } svnWorker.checkout(settings); File svnInfo = new File(settings.getCheckoutPath() + svnWorker.tempDir + "/.svn"); svnInfo.renameTo(newSvnInfo); if (deleteFileDir(tempDir) == false) { error("Error while managing working copy"); } try { settings.serializeOut(); } catch (Exception ex) { error("Error occured when re-newing settings.", ex); } } catch (Exception ex) { error("Error while checking out a working copy for the location", ex); } showMessageBox("Import succesful", "Succesfully imported as revision no. " + committedRevision); return; } else { try { committedRevision = svnWorker.commit(settings, false).getNewRevision(); } catch (Exception ex) { error("Error while committing changes. If the file is not working copy, you must use 'Checkout / Update' first.", ex); } if (committedRevision == -1) { showMessageBox("Update - no changes", "No changes was made. Maybe you must just save the changes."); } else { showMessageBox("Commit succesfull", "Commited as revision no. " + committedRevision); } } } catch (Exception ex) { error(ex); } return; } if (aURL.Path.compareTo("svnHistory") == 0) { try { try { settings = getSerializedSettings(docProperty); } catch (Exception ex) { error("Error getting settings", ex); return; } Object[][] logs = getLogs(settings); long checkVersion = settings.getCheckoutVersion(); settings.setCheckoutVersion(-99); new DialogSVNHistory(new javax.swing.JFrame(), true, settings, logs).setVisible(true); settings.setCheckoutVersion(checkVersion); } catch (Exception ex) { error(ex); } return; } if (aURL.Path.compareTo("settings") == 0) { try { settings = getSerializedSettings(docProperty); } catch (NoSerializedSettingsException ex) { try { settings.setCheckout(docProperty.getDocURL()); } catch (Exception exx) { } } catch (Exception ex) { error("Error getting settings; maybe you" + " need to save your document." + " If this is your first" + " checkout of the document, use Checkout" + " function directly."); return; } new DialogSettings(new javax.swing.JFrame(), true, settings).setVisible(true); try { settings.serializeOut(); } catch (Exception ex) { error("Error occured when saving settings.", ex); } return; } if (aURL.Path.compareTo("about") == 0) { showMessageBox("OoSvn :: About", "Autor: �t�p�n Cenek (stepan@geek.cz)"); return; } } } | 17,580 |
1 | private static void main(String[] args) { try { File f = new File("test.txt"); if (f.exists()) { throw new IOException(f + " already exists. I don't want to overwrite it."); } StraightStreamReader in; char[] cbuf = new char[0x1000]; int read; int totRead; FileOutputStream out = new FileOutputStream(f); for (int i = 0x00; i < 0x100; i++) { out.write(i); } out.close(); in = new StraightStreamReader(new FileInputStream(f)); for (int i = 0x00; i < 0x100; i++) { read = in.read(); if (read != i) { System.err.println("Error: " + i + " read as " + read); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = in.read(cbuf); if (totRead != 0x100) { System.err.println("Simple buffered read did not read the full amount: 0x" + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 7)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); f.delete(); } catch (IOException x) { System.err.println(x.getMessage()); } } | public static void main(String[] args) { try { int encodeFlag = 0; if (args[0].equals("-e")) { encodeFlag = Base64.ENCODE; } else if (args[0].equals("-d")) { encodeFlag = Base64.DECODE; } String infile = args[1]; String outfile = args[2]; File fin = new File(infile); FileInputStream fis = new FileInputStream(fin); BufferedInputStream bis = new BufferedInputStream(fis); Base64.InputStream b64in = new Base64.InputStream(bis, encodeFlag | Base64.DO_BREAK_LINES); File fout = new File(outfile); FileOutputStream fos = new FileOutputStream(fout); BufferedOutputStream bos = new BufferedOutputStream(fos); byte[] buff = new byte[1024]; int read = -1; while ((read = b64in.read(buff)) >= 0) { bos.write(buff, 0, read); } bos.close(); b64in.close(); } catch (Exception e) { e.printStackTrace(); } } | 17,581 |
0 | public void bspMain(BSP bsp, Serializable arg) throws AbortedException { if (!(arg instanceof String[])) { bsp.abort(new RuntimeException("String[] as arguments expected")); } String[] args = (String[]) arg; long t1 = 0L, t2; try { if (bsp != null) bsp.printStdOut(bsp.getHostname()); else System.out.println(InetAddress.getLocalHost().getCanonicalHostName()); } catch (Exception e) { if (bsp != null) bsp.printStdOut("exception: " + e); else System.out.println("exception: " + e); } Formula formula = null; if (bsp == null || bsp.getProcessId() == 0) { try { InputStream src; String input; if (args.length > 0) input = args[0]; else input = "sat/uuf175-03.cnf"; if (bsp != null) bsp.printStdOut("using formula definition: " + input); else System.out.println("using formula definition: " + input); if (bsp != null) { bsp.printStdOut("trying to read formula from class file server of the job owner's peer"); src = bsp.getResourceAsStream(input); } else { System.out.println("trying to read formula from http://www.upb.de/fachbereich/AG/agmadh/WWW/bono/" + input); URL url = new URL("http", "www.upb.de", -1, "/fachbereich/AG/agmadh/WWW/bono/" + input, null); src = url.openStream(); } formula = new Formula(src, bsp); } catch (Exception e) { if (bsp != null) { bsp.printStdOut("cannot load formula: " + e); bsp.abort(e); } else { System.out.println("cannot load formula: " + e); System.exit(1); } } formula.print(bsp); } if (bsp != null) { bsp.sync(); if (bsp.getProcessId() == 0) t1 = bsp.getTime(); Formula.parallelSolve(formula, bsp); bsp.sync(); if (bsp.getProcessId() == 0) { t2 = bsp.getTime(); bsp.printStdOut("consumed time: " + ((t2 - t1) / 1000) + "s"); } } else formula.solve(bsp); if (bsp == null || bsp.getProcessId() == 0) { if (formula.isSatisfiable()) { if (bsp != null) bsp.printStdOut("satisfiable"); else System.out.println("satisfiable"); } else { if (bsp != null) bsp.printStdOut("not satisfiable"); else System.out.println("not satisfiable"); } formula.printVariables(bsp); } } | public void exportFile() { String expfolder = PropertyHandler.getInstance().getProperty(PropertyHandler.KINDLE_EXPORT_FOLDER_KEY); File out = new File(expfolder + File.separator + previewInfo.getTitle() + ".prc"); File f = new File(absPath); try { FileOutputStream fout = new FileOutputStream(out); FileInputStream fin = new FileInputStream(f); int read = 0; byte[] buffer = new byte[1024 * 1024]; while ((read = fin.read(buffer)) > 0) { fout.write(buffer, 0, read); } fin.close(); fout.close(); } catch (FileNotFoundException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } } | 17,582 |
0 | private void createIDocPluginProject(IProgressMonitor monitor, String sourceFileName, String pluginName, String pluginNameJCo) throws CoreException, IOException { monitor.subTask(MessageFormat.format(Messages.ProjectGenerator_CreatePluginTaskDescription, pluginName)); final Map<String, byte[]> files = readArchiveFile(sourceFileName); monitor.worked(10); IProject project = workspaceRoot.getProject(pluginName); if (project.exists()) { project.delete(true, true, new SubProgressMonitor(monitor, 5)); } else { monitor.worked(5); } project.create(new SubProgressMonitor(monitor, 5)); project.open(new SubProgressMonitor(monitor, 5)); IProjectDescription description = project.getDescription(); description.setNatureIds(new String[] { JavaCore.NATURE_ID, PLUGIN_NATURE_ID }); project.setDescription(description, new SubProgressMonitor(monitor, 5)); IJavaProject javaProject = JavaCore.create(project); IFolder binDir = project.getFolder("bin"); IPath binPath = binDir.getFullPath(); javaProject.setOutputLocation(binPath, new SubProgressMonitor(monitor, 5)); project.getFile("sapidoc3.jar").create(new ByteArrayInputStream(files.get("sapidoc3.jar")), true, new SubProgressMonitor(monitor, 15)); IFolder metaInfFolder = project.getFolder("META-INF"); metaInfFolder.create(true, true, new SubProgressMonitor(monitor, 5)); StringBuilder manifest = new StringBuilder(); manifest.append("Manifest-Version: 1.0\n"); manifest.append("Bundle-ManifestVersion: 2\n"); manifest.append("Bundle-Name: SAP IDoc Library v3\n"); manifest.append(MessageFormat.format("Bundle-SymbolicName: {0}\n", pluginName)); manifest.append("Bundle-Version: 7.11.0\n"); manifest.append("Bundle-ClassPath: bin/,\n"); manifest.append(" sapidoc3.jar\n"); manifest.append("Bundle-Vendor: SAP AG, Walldorf (packaged using RCER)\n"); manifest.append("Bundle-RequiredExecutionEnvironment: J2SE-1.5\n"); manifest.append("Export-Package: com.sap.conn.idoc,\n"); manifest.append(" com.sap.conn.idoc.jco,\n"); manifest.append(" com.sap.conn.idoc.rt.cp,\n"); manifest.append(" com.sap.conn.idoc.rt.record,\n"); manifest.append(" com.sap.conn.idoc.rt.record.impl,\n"); manifest.append(" com.sap.conn.idoc.rt.trace,\n"); manifest.append(" com.sap.conn.idoc.rt.util,\n"); manifest.append(" com.sap.conn.idoc.rt.xml\n"); manifest.append("Bundle-ActivationPolicy: lazy\n"); manifest.append(MessageFormat.format("Require-Bundle: {0}\n", pluginNameJCo)); writeTextFile(monitor, manifest, metaInfFolder.getFile("MANIFEST.MF")); final IPath jcoPath = new Path(MessageFormat.format("/{0}/sapidoc3.jar", pluginName)); IClasspathEntry jcoEntry = JavaCore.newLibraryEntry(jcoPath, Path.EMPTY, Path.EMPTY, true); javaProject.setRawClasspath(new IClasspathEntry[] { jcoEntry }, new SubProgressMonitor(monitor, 5)); StringBuilder buildProperties = new StringBuilder(); buildProperties.append("bin.includes = META-INF/,\\\n"); buildProperties.append(" sapidoc3.jar,\\\n"); buildProperties.append(" .\n"); writeTextFile(monitor, buildProperties, project.getFile("build.properties")); exportableBundles.add(modelManager.findModel(project)); } | public static void copyFile(File src, File dst) { try { FileInputStream fis = new FileInputStream(src); FileOutputStream fos = new FileOutputStream(dst); try { byte[] buf = new byte[1024]; int i = 0; while ((i = fis.read(buf)) != -1) fos.write(buf, 0, i); } catch (IOException e) { throw e; } finally { if (fis != null) fis.close(); if (fos != null) fos.close(); } } catch (IOException e) { logger.error("Error coping file from " + src + " to " + dst, e); } } | 17,583 |
1 | public static boolean copyFile(final File fileFrom, final File fileTo) { assert fileFrom != null : "fileFrom is null"; assert fileTo != null : "fileTo is null"; LOGGER.info(buildLogString(COPY_FILE_INFO, new Object[] { fileFrom, fileTo })); boolean error = true; FileInputStream inputStream = null; FileOutputStream outputStream = null; try { inputStream = new FileInputStream(fileFrom); outputStream = new FileOutputStream(fileTo); final FileChannel inChannel = inputStream.getChannel(); final FileChannel outChannel = outputStream.getChannel(); inChannel.transferTo(0, inChannel.size(), outChannel); error = false; } catch (final IOException e) { LOGGER.log(SEVERE, buildLogString(COPY_FILE_ERROR, new Object[] { fileFrom, fileTo }), e); } finally { closeCloseable(inputStream, fileFrom); closeCloseable(outputStream, fileTo); } return error; } | File exportCommunityData(Community community) throws CommunityNotActiveException, FileNotFoundException, IOException, CommunityNotFoundException { try { String communityId = community.getId(); if (!community.isActive()) { log.error("The community with id " + communityId + " is inactive"); throw new CommunityNotActiveException("The community with id " + communityId + " is inactive"); } new File(CommunityManagerImpl.EXPORTED_COMMUNITIES_PATH).mkdirs(); String communityName = community.getName(); String communityType = community.getType(); String communityTitle = I18NUtils.localize(community.getTitle()); File zipOutFilename; if (community.isPersonalCommunity()) { zipOutFilename = new File(CommunityManagerImpl.EXPORTED_COMMUNITIES_PATH + communityName + ".zip"); } else { zipOutFilename = new File(CommunityManagerImpl.EXPORTED_COMMUNITIES_PATH + MANUAL_EXPORTED_COMMUNITY_PREFIX + communityTitle + ".zip"); } ZipOutputStream out = new ZipOutputStream(new FileOutputStream(zipOutFilename)); File file = File.createTempFile("exported-community", null); TemporaryFilesHandler.register(null, file); FileOutputStream fos = new FileOutputStream(file); String contentPath = JCRUtil.getNodeById(communityId).getPath(); JCRUtil.currentSession().exportSystemView(contentPath, fos, false, false); fos.close(); File propertiesFile = File.createTempFile("exported-community-properties", null); TemporaryFilesHandler.register(null, propertiesFile); FileOutputStream fosProperties = new FileOutputStream(propertiesFile); fosProperties.write(("communityId=" + communityId).getBytes()); fosProperties.write(";".getBytes()); fosProperties.write(("externalId=" + community.getExternalId()).getBytes()); fosProperties.write(";".getBytes()); fosProperties.write(("title=" + communityTitle).getBytes()); fosProperties.write(";".getBytes()); fosProperties.write(("communityType=" + communityType).getBytes()); fosProperties.write(";".getBytes()); fosProperties.write(("communityName=" + communityName).getBytes()); fosProperties.close(); FileInputStream finProperties = new FileInputStream(propertiesFile); byte[] bufferProperties = new byte[4096]; out.putNextEntry(new ZipEntry("properties")); int readProperties = 0; while ((readProperties = finProperties.read(bufferProperties)) > 0) { out.write(bufferProperties, 0, readProperties); } finProperties.close(); FileInputStream fin = new FileInputStream(file); byte[] buffer = new byte[4096]; out.putNextEntry(new ZipEntry("xmlData")); int read = 0; while ((read = fin.read(buffer)) > 0) { out.write(buffer, 0, read); } fin.close(); out.close(); community.setActive(Boolean.FALSE); communityPersister.saveCommunity(community); Collection<Community> duplicatedPersonalCommunities = communityPersister.searchCommunitiesByName(communityName); if (CommunityManager.PERSONAL_COMMUNITY_TYPE.equals(communityType)) { for (Community currentCommunity : duplicatedPersonalCommunities) { if (currentCommunity.isActive()) { currentCommunity.setActive(Boolean.FALSE); communityPersister.saveCommunity(currentCommunity); } } } return zipOutFilename; } catch (RepositoryException e) { log.error("Error getting community with id " + community.getId()); throw new GroupwareRuntimeException("Error getting community with id " + community.getId(), e.getCause()); } } | 17,584 |
1 | private static void main(String[] args) { try { File f = new File("test.txt"); if (f.exists()) { throw new IOException(f + " already exists. I don't want to overwrite it."); } StraightStreamReader in; char[] cbuf = new char[0x1000]; int read; int totRead; FileOutputStream out = new FileOutputStream(f); for (int i = 0x00; i < 0x100; i++) { out.write(i); } out.close(); in = new StraightStreamReader(new FileInputStream(f)); for (int i = 0x00; i < 0x100; i++) { read = in.read(); if (read != i) { System.err.println("Error: " + i + " read as " + read); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = in.read(cbuf); if (totRead != 0x100) { System.err.println("Simple buffered read did not read the full amount: 0x" + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 7)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); f.delete(); } catch (IOException x) { System.err.println(x.getMessage()); } } | protected void doProxyInternally(HttpServletRequest req, HttpServletResponse res) throws ServletException, IOException { HttpRequestBase proxyReq = buildProxyRequest(req); URI reqUri = proxyReq.getURI(); String cookieDomain = reqUri.getHost(); DefaultHttpClient httpClient = new DefaultHttpClient(); HttpContext httpContext = new BasicHttpContext(); httpContext.setAttribute("org.atricorel.idbus.kernel.main.binding.http.HttpServletRequest", req); int intIdx = 0; for (int i = 0; i < httpClient.getRequestInterceptorCount(); i++) { if (httpClient.getRequestInterceptor(i) instanceof RequestAddCookies) { intIdx = i; break; } } IDBusRequestAddCookies interceptor = new IDBusRequestAddCookies(cookieDomain); httpClient.removeRequestInterceptorByClass(RequestAddCookies.class); httpClient.addRequestInterceptor(interceptor, intIdx); httpClient.getParams().setParameter(ClientPNames.HANDLE_REDIRECTS, false); httpClient.getParams().setParameter(ClientPNames.COOKIE_POLICY, CookiePolicy.BROWSER_COMPATIBILITY); if (logger.isTraceEnabled()) logger.trace("Staring to follow redirects for " + req.getPathInfo()); HttpResponse proxyRes = null; List<Header> storedHeaders = new ArrayList<Header>(40); boolean followTargetUrl = true; byte[] buff = new byte[1024]; while (followTargetUrl) { if (logger.isTraceEnabled()) logger.trace("Sending internal request " + proxyReq); proxyRes = httpClient.execute(proxyReq, httpContext); String targetUrl = null; Header[] headers = proxyRes.getAllHeaders(); for (Header header : headers) { if (header.getName().equals("Server")) continue; if (header.getName().equals("Transfer-Encoding")) continue; if (header.getName().equals("Location")) continue; if (header.getName().equals("Expires")) continue; if (header.getName().equals("Content-Length")) continue; if (header.getName().equals("Content-Type")) continue; storedHeaders.add(header); } if (logger.isTraceEnabled()) logger.trace("HTTP/STATUS:" + proxyRes.getStatusLine().getStatusCode() + "[" + proxyReq + "]"); switch(proxyRes.getStatusLine().getStatusCode()) { case 200: followTargetUrl = false; break; case 404: followTargetUrl = false; break; case 500: followTargetUrl = false; break; case 302: Header location = proxyRes.getFirstHeader("Location"); targetUrl = location.getValue(); if (!internalProcessingPolicy.match(req, targetUrl)) { if (logger.isTraceEnabled()) logger.trace("Do not follow HTTP 302 to [" + location.getValue() + "]"); Collections.addAll(storedHeaders, proxyRes.getHeaders("Location")); followTargetUrl = false; } else { if (logger.isTraceEnabled()) logger.trace("Do follow HTTP 302 to [" + location.getValue() + "]"); followTargetUrl = true; } break; default: followTargetUrl = false; break; } HttpEntity entity = proxyRes.getEntity(); if (entity != null) { InputStream instream = entity.getContent(); try { if (!followTargetUrl) { for (Header header : headers) { if (header.getName().equals("Content-Type")) res.setHeader(header.getName(), header.getValue()); if (header.getName().equals("Content-Length")) res.setHeader(header.getName(), header.getValue()); } res.setStatus(proxyRes.getStatusLine().getStatusCode()); for (Header header : storedHeaders) { if (header.getName().startsWith("Set-Cookie")) res.addHeader(header.getName(), header.getValue()); else res.setHeader(header.getName(), header.getValue()); } IOUtils.copy(instream, res.getOutputStream()); res.getOutputStream().flush(); } else { int r = instream.read(buff); int total = r; while (r > 0) { r = instream.read(buff); total += r; } if (total > 0) logger.warn("Ignoring response content size : " + total); } } catch (IOException ex) { throw ex; } catch (RuntimeException ex) { proxyReq.abort(); throw ex; } finally { try { instream.close(); } catch (Exception ignore) { } } } else { if (!followTargetUrl) { res.setStatus(proxyRes.getStatusLine().getStatusCode()); for (Header header : headers) { if (header.getName().equals("Content-Type")) res.setHeader(header.getName(), header.getValue()); if (header.getName().equals("Content-Length")) res.setHeader(header.getName(), header.getValue()); } for (Header header : storedHeaders) { if (header.getName().startsWith("Set-Cookie")) res.addHeader(header.getName(), header.getValue()); else res.setHeader(header.getName(), header.getValue()); } } } if (followTargetUrl) { proxyReq = buildProxyRequest(targetUrl); httpContext = null; } } if (logger.isTraceEnabled()) logger.trace("Ended following redirects for " + req.getPathInfo()); } | 17,585 |
1 | protected void truncate(File file) { LogLog.debug("Compression of file: " + file.getAbsolutePath() + " started."); if (FileUtils.isFileOlder(file, ManagementFactory.getRuntimeMXBean().getStartTime())) { File backupRoot = new File(getBackupDir()); if (!backupRoot.exists() && !backupRoot.mkdirs()) { throw new AppenderInitializationError("Can't create backup dir for backup storage"); } SimpleDateFormat df; try { df = new SimpleDateFormat(getBackupDateFormat()); } catch (Exception e) { throw new AppenderInitializationError("Invalid date formate for backup files: " + getBackupDateFormat(), e); } String date = df.format(new Date(file.lastModified())); File zipFile = new File(backupRoot, file.getName() + "." + date + ".zip"); ZipOutputStream zos = null; FileInputStream fis = null; try { zos = new ZipOutputStream(new FileOutputStream(zipFile)); ZipEntry entry = new ZipEntry(file.getName()); entry.setMethod(ZipEntry.DEFLATED); entry.setCrc(FileUtils.checksumCRC32(file)); zos.putNextEntry(entry); fis = FileUtils.openInputStream(file); byte[] buffer = new byte[1024]; int readed; while ((readed = fis.read(buffer)) != -1) { zos.write(buffer, 0, readed); } } catch (Exception e) { throw new AppenderInitializationError("Can't create zip file", e); } finally { if (zos != null) { try { zos.close(); } catch (IOException e) { LogLog.warn("Can't close zip file", e); } } if (fis != null) { try { fis.close(); } catch (IOException e) { LogLog.warn("Can't close zipped file", e); } } } if (!file.delete()) { throw new AppenderInitializationError("Can't delete old log file " + file.getAbsolutePath()); } } } | public static DownloadedContent downloadContent(final InputStream is) throws IOException { if (is == null) { return new DownloadedContent.InMemory(new byte[] {}); } final ByteArrayOutputStream bos = new ByteArrayOutputStream(); final byte[] buffer = new byte[1024]; int nbRead; try { while ((nbRead = is.read(buffer)) != -1) { bos.write(buffer, 0, nbRead); if (bos.size() > MAX_IN_MEMORY) { final File file = File.createTempFile("htmlunit", ".tmp"); file.deleteOnExit(); final FileOutputStream fos = new FileOutputStream(file); bos.writeTo(fos); IOUtils.copyLarge(is, fos); fos.close(); return new DownloadedContent.OnFile(file); } } } finally { IOUtils.closeQuietly(is); } return new DownloadedContent.InMemory(bos.toByteArray()); } | 17,586 |
1 | public static String send(String ipStr, int port, String password, String command, InetAddress localhost, int localPort) throws SocketTimeoutException, BadRcon, ResponseEmpty { StringBuffer response = new StringBuffer(); try { rconSocket = new Socket(); rconSocket.bind(new InetSocketAddress(localhost, localPort)); rconSocket.connect(new InetSocketAddress(ipStr, port), RESPONSE_TIMEOUT); out = rconSocket.getOutputStream(); in = rconSocket.getInputStream(); BufferedReader buffRead = new BufferedReader(new InputStreamReader(in)); rconSocket.setSoTimeout(RESPONSE_TIMEOUT); String digestSeed = ""; boolean loggedIn = false; boolean keepGoing = true; while (keepGoing) { String receivedContent = buffRead.readLine(); if (receivedContent.startsWith("### Digest seed: ")) { digestSeed = receivedContent.substring(17, receivedContent.length()); try { MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(digestSeed.getBytes()); md5.update(password.getBytes()); String digestStr = "login " + digestedToHex(md5.digest()) + "\n"; out.write(digestStr.getBytes()); } catch (NoSuchAlgorithmException e1) { response.append("MD5 algorithm not available - unable to complete RCON request."); keepGoing = false; } } else if (receivedContent.startsWith("error: not authenticated: you can only invoke 'login'")) { throw new BadRcon(); } else if (receivedContent.startsWith("Authentication failed.")) { throw new BadRcon(); } else if (receivedContent.startsWith("Authentication successful, rcon ready.")) { keepGoing = false; loggedIn = true; } } if (loggedIn) { String cmd = "exec " + command + "\n"; out.write(cmd.getBytes()); readResponse(buffRead, response); if (response.length() == 0) { throw new ResponseEmpty(); } } } catch (SocketTimeoutException timeout) { throw timeout; } catch (UnknownHostException e) { response.append("UnknownHostException: " + e.getMessage()); } catch (IOException e) { response.append("Couldn't get I/O for the connection: " + e.getMessage()); e.printStackTrace(); } finally { try { if (out != null) { out.close(); } if (in != null) { in.close(); } if (rconSocket != null) { rconSocket.close(); } } catch (IOException e1) { } } return response.toString(); } | private String generateFilename() { byte[] hash = null; try { MessageDigest digest = MessageDigest.getInstance("MD5"); try { digest.update(InetAddress.getLocalHost().toString().getBytes()); } catch (UnknownHostException e) { } digest.update(String.valueOf(System.currentTimeMillis()).getBytes()); digest.update(String.valueOf(Runtime.getRuntime().freeMemory()).getBytes()); byte[] foo = new byte[128]; new SecureRandom().nextBytes(foo); digest.update(foo); hash = digest.digest(); } catch (NoSuchAlgorithmException e) { Debug.assrt(false); } return hexEncode(hash); } | 17,587 |
0 | public void execute() throws InstallerException { try { SQLCommand sqlCommand = new SQLCommand(connectionInfo); connection = sqlCommand.getConnection(); connection.setAutoCommit(false); sqlStatement = connection.createStatement(); double size = (double) statements.size(); for (String statement : statements) { sqlStatement.executeUpdate(statement); setCompletedPercentage(getCompletedPercentage() + (1 / size)); } connection.commit(); } catch (SQLException e) { try { connection.rollback(); } catch (SQLException e1) { throw new InstallerException(InstallerException.TRANSACTION_ROLLBACK_ERROR, new Object[] { e.getMessage() }, e); } throw new InstallerException(InstallerException.SQL_EXEC_EXCEPTION, new Object[] { e.getMessage() }, e); } catch (ClassNotFoundException e) { throw new InstallerException(InstallerException.DB_DRIVER_LOAD_ERROR, e); } finally { if (connection != null) { try { sqlStatement.close(); connection.close(); } catch (SQLException e) { } } } } | public static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | 17,588 |
1 | private String[] verifyConnection(Socket clientConnection) throws Exception { List<String> requestLines = new ArrayList<String>(); InputStream is = clientConnection.getInputStream(); BufferedReader in = new BufferedReader(new InputStreamReader(is)); StringTokenizer st = new StringTokenizer(in.readLine()); if (!st.hasMoreTokens()) { throw new IllegalArgumentException("There's no method token in this connection"); } String method = st.nextToken(); if (!st.hasMoreTokens()) { throw new IllegalArgumentException("There's no URI token in this connection"); } String uri = decodePercent(st.nextToken()); if (!st.hasMoreTokens()) { throw new IllegalArgumentException("There's no version token in this connection"); } String version = st.nextToken(); Properties parms = new Properties(); int qmi = uri.indexOf('?'); if (qmi >= 0) { decodeParms(uri.substring(qmi + 1), parms); uri = decodePercent(uri.substring(0, qmi)); } String params = ""; if (parms.size() > 0) { params = "?"; for (Object key : parms.keySet()) { params = params + key + "=" + parms.getProperty(((String) key)) + "&"; } params = params.substring(0, params.length() - 1).replace(" ", "%20"); } logger.debug("HTTP Request: " + method + " " + uri + params + " " + version); requestLines.add(method + " " + uri + params + " " + version); Properties headerVars = new Properties(); String line; String currentBoundary = null; Stack<String> boundaryStack = new Stack<String>(); boolean readingBoundary = false; String additionalData = ""; while (in.ready() && (line = in.readLine()) != null) { if (line.equals("") && (headerVars.get("Content-Type") == null || headerVars.get("Content-Length") == null)) { break; } logger.debug("HTTP Request Header: " + line); if (line.contains(": ")) { String vals[] = line.split(": "); headerVars.put(vals[0].trim(), vals[1].trim()); } if (!readingBoundary && line.contains(": ")) { if (line.contains("boundary=")) { currentBoundary = line.split("boundary=")[1].trim(); boundaryStack.push("--" + currentBoundary); } continue; } else if (line.equals("") && boundaryStack.isEmpty()) { int val = Integer.parseInt((String) headerVars.get("Content-Length")); if (headerVars.getProperty("Content-Type").contains("x-www-form-urlencoded")) { char buf[] = new char[val]; int read = in.read(buf); line = String.valueOf(buf, 0, read); additionalData = line; logger.debug("HTTP Request Header Form Parameters: " + line); } } else if (line.equals(boundaryStack.peek()) && !readingBoundary) { readingBoundary = true; } else if (line.equals(boundaryStack.peek()) && readingBoundary) { readingBoundary = false; } else if (line.contains(": ") && readingBoundary) { if (method.equalsIgnoreCase("PUT")) { if (line.contains("form-data; ")) { String formValues = line.split("form-data; ")[1]; for (String varValue : formValues.replace("\"", "").split("; ")) { String[] vV = varValue.split("="); vV[0] = decodePercent(vV[0]); vV[1] = decodePercent(vV[1]); headerVars.put(vV[0], vV[1]); } } } } else if (line.contains("") && readingBoundary && !boundaryStack.isEmpty() && headerVars.get("filename") != null) { int length = Integer.parseInt(headerVars.getProperty("Content-Length")); if (headerVars.getProperty("Content-Transfer-Encoding").contains("binary")) { File uploadFilePath = new File(VOctopusConfigurationManager.WebServerProperties.HTTPD_CONF.getPropertyValue("TempDirectory")); if (!uploadFilePath.exists()) { logger.error("Temporaty dir does not exist: " + uploadFilePath.getCanonicalPath()); } if (!uploadFilePath.isDirectory()) { logger.error("Temporary dir is not a directory: " + uploadFilePath.getCanonicalPath()); } if (!uploadFilePath.canWrite()) { logger.error("VOctopus Webserver doesn't have permissions to write on temporary dir: " + uploadFilePath.getCanonicalPath()); } FileOutputStream out = null; try { String putUploadPath = uploadFilePath.getAbsolutePath() + "/" + headerVars.getProperty("filename"); out = new FileOutputStream(putUploadPath); OutputStream outf = new BufferedOutputStream(out); int c; while (in.ready() && (c = in.read()) != -1 && length-- > 0) { outf.write(c); } } finally { if (out != null) { out.close(); } } File copied = new File(VOctopusConfigurationManager.getInstance().getDocumentRootPath() + uri + headerVars.get("filename")); File tempFile = new File(VOctopusConfigurationManager.WebServerProperties.HTTPD_CONF.getPropertyValue("TempDirectory") + "/" + headerVars.get("filename")); FileChannel ic = new FileInputStream(tempFile.getAbsolutePath()).getChannel(); FileChannel oc = new FileOutputStream(copied.getAbsolutePath()).getChannel(); ic.transferTo(0, ic.size(), oc); ic.close(); oc.close(); } } } for (Object var : headerVars.keySet()) { requestLines.add(var + ": " + headerVars.get(var)); } if (!additionalData.equals("")) { requestLines.add("ADDITIONAL" + additionalData); } return requestLines.toArray(new String[requestLines.size()]); } | private static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | 17,589 |
0 | boolean createSessionArchive(String archiveFilename) { byte[] buffer = new byte[1024]; try { ZipOutputStream archive = new ZipOutputStream(new FileOutputStream(archiveFilename)); for (mAnnotationsCursor.moveToFirst(); !mAnnotationsCursor.isAfterLast(); mAnnotationsCursor.moveToNext()) { FileInputStream in = new FileInputStream(mAnnotationsCursor.getString(ANNOTATIONS_FILE_NAME)); archive.putNextEntry(new ZipEntry("audio" + (mAnnotationsCursor.getPosition() + 1) + ".3gpp")); int length; while ((length = in.read(buffer)) > 0) archive.write(buffer, 0, length); archive.closeEntry(); in.close(); } archive.close(); } catch (IOException e) { Toast.makeText(mActivity, mActivity.getString(R.string.error_zip) + " " + e.getMessage(), Toast.LENGTH_SHORT).show(); return false; } return true; } | @Override public void run() { Shell currentShell = Display.getCurrent().getActiveShell(); if (DMManager.getInstance().getOntology() == null) return; DataRecordSet data = DMManager.getInstance().getOntology().getDataView().dataset(); InputDialog input = new InputDialog(currentShell, Resources.I18N.getString("vikamine.dtp.title"), Resources.I18N.getString("vikamine.dtp.export.tablename"), data.getRelationName(), null); input.open(); String tablename = input.getValue(); if (tablename == null) return; super.getProfile().connect(); IManagedConnection mc = super.getProfile().getManagedConnection("java.sql.Connection"); java.sql.Connection sql = (java.sql.Connection) mc.getConnection().getRawConnection(); try { sql.setAutoCommit(false); DatabaseMetaData dbmd = sql.getMetaData(); ResultSet tables = dbmd.getTables(null, null, tablename, new String[] { "TABLE" }); if (tables.next()) { if (!MessageDialog.openConfirm(currentShell, Resources.I18N.getString("vikamine.dtp.title"), Resources.I18N.getString("vikamine.dtp.export.overwriteTable"))) return; Statement statement = sql.createStatement(); statement.executeUpdate("DROP TABLE " + tablename); statement.close(); } String createTableQuery = null; for (int i = 0; i < data.getNumAttributes(); i++) { if (DMManager.getInstance().getOntology().isIDAttribute(data.getAttribute(i))) continue; if (createTableQuery == null) createTableQuery = ""; else createTableQuery += ","; createTableQuery += getColumnDefinition(data.getAttribute(i)); } Statement statement = sql.createStatement(); statement.executeUpdate("CREATE TABLE " + tablename + "(" + createTableQuery + ")"); statement.close(); exportRecordSet(data, sql, tablename); sql.commit(); sql.setAutoCommit(true); MessageDialog.openInformation(currentShell, Resources.I18N.getString("vikamine.dtp.title"), Resources.I18N.getString("vikamine.dtp.export.successful")); } catch (SQLException e) { try { sql.rollback(); } catch (SQLException e1) { e1.printStackTrace(); } MessageDialog.openError(currentShell, Resources.I18N.getString("vikamine.dtp.title"), Resources.I18N.getString("vikamine.dtp.export.failed")); e.printStackTrace(); } } | 17,590 |
0 | protected Set<String> moduleNamesFromReader(URL url) throws IOException { BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); Set<String> names = new HashSet<String>(); String line; while ((line = reader.readLine()) != null) { line = line.trim(); Matcher m = nonCommentPattern.matcher(line); if (m.find()) { names.add(m.group().trim()); } } return names; } | public String getMD5(String password) throws NoSuchAlgorithmException { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(password.getBytes()); byte byteData[] = md.digest(); StringBuffer sb = new StringBuffer(); for(int i = 0; i < byteData.length; i++) { sb.append(Integer.toString((byteData[i] & 0xff) + 0x100, 16).substring(1)); } return sb.toString(); } | 17,591 |
1 | public void zipDocsetFiles(SaxHandler theXmlHandler, int theEventId, Attributes theAtts) throws BpsProcessException { ZipOutputStream myZipOut = null; BufferedInputStream myDocumentInputStream = null; String myFinalFile = null; String myTargetPath = null; String myTargetFileName = null; String myInputFileName = null; byte[] myBytesBuffer = null; int myLength = 0; try { myZipOut = new ZipOutputStream(new FileOutputStream(myFinalFile)); myZipOut.putNextEntry(new ZipEntry(myTargetPath + myTargetFileName)); myDocumentInputStream = new BufferedInputStream(new FileInputStream(myInputFileName)); while ((myLength = myDocumentInputStream.read(myBytesBuffer, 0, 4096)) != -1) myZipOut.write(myBytesBuffer, 0, myLength); myZipOut.closeEntry(); myZipOut.close(); } catch (FileNotFoundException e) { throw (new BpsProcessException(BpsProcessException.ERR_OPEN_FILE, "FileNotFoundException while building zip dest file")); } catch (IOException e) { throw (new BpsProcessException(BpsProcessException.ERR_OPEN_FILE, "IOException while building zip dest file")); } } | @Test public void testGrantLicense() throws Exception { context.turnOffAuthorisationSystem(); Item item = Item.create(context); String defaultLicense = ConfigurationManager.getDefaultSubmissionLicense(); LicenseUtils.grantLicense(context, item, defaultLicense); StringWriter writer = new StringWriter(); IOUtils.copy(item.getBundles("LICENSE")[0].getBitstreams()[0].retrieve(), writer); String license = writer.toString(); assertThat("testGrantLicense 0", license, equalTo(defaultLicense)); context.restoreAuthSystemState(); } | 17,592 |
1 | public static String getMD5Str(String str) { MessageDigest messageDigest = null; try { messageDigest = MessageDigest.getInstance("MD5"); messageDigest.reset(); messageDigest.update(str.getBytes("UTF-8")); } catch (NoSuchAlgorithmException e) { System.out.println("NoSuchAlgorithmException caught!"); System.exit(-1); } catch (UnsupportedEncodingException e) { e.printStackTrace(); } byte[] byteArray = messageDigest.digest(); StringBuffer md5StrBuff = new StringBuffer(); for (int i = 0; i < byteArray.length; i++) { if (Integer.toHexString(0xFF & byteArray[i]).length() == 1) md5StrBuff.append("0").append(Integer.toHexString(0xFF & byteArray[i])); else md5StrBuff.append(Integer.toHexString(0xFF & byteArray[i])); } return md5StrBuff.substring(8, 24).toString().toUpperCase(); } | public static String encrypt(String algorithm, String[] input) { try { MessageDigest md = MessageDigest.getInstance(algorithm); md.reset(); for (int i = 0; i < input.length; i++) { if (input[i] != null) md.update(input[i].getBytes("UTF-8")); } byte[] messageDigest = md.digest(); StringBuffer hexString = new StringBuffer(); for (int i = 0; i < messageDigest.length; i++) { hexString.append(Integer.toHexString((0xf0 & messageDigest[i]) >> 4)); hexString.append(Integer.toHexString(0x0f & messageDigest[i])); } return hexString.toString(); } catch (NoSuchAlgorithmException e) { throw new RuntimeException(e); } catch (UnsupportedEncodingException e) { throw new RuntimeException(e); } catch (NullPointerException e) { return new StringBuffer().toString(); } } | 17,593 |
0 | private void weightAndPlaceClasses() { int rows = getRows(); for (int curRow = _maxPackageRank; curRow < rows; curRow++) { xPos = getHGap() / 2; ClassdiagramNode[] rowObject = getObjectsInRow(curRow); for (int i = 0; i < rowObject.length; i++) { if (curRow == _maxPackageRank) { int nDownlinks = rowObject[i].getDownlinks().size(); rowObject[i].setWeight((nDownlinks > 0) ? (1 / nDownlinks) : 2); } else { Vector uplinks = rowObject[i].getUplinks(); int nUplinks = uplinks.size(); if (nUplinks > 0) { float average_col = 0; for (int j = 0; j < uplinks.size(); j++) { average_col += ((ClassdiagramNode) (uplinks.elementAt(j))).getColumn(); } average_col /= nUplinks; rowObject[i].setWeight(average_col); } else { rowObject[i].setWeight(1000); } } } int[] pos = new int[rowObject.length]; for (int i = 0; i < pos.length; i++) { pos[i] = i; } boolean swapped = true; while (swapped) { swapped = false; for (int i = 0; i < pos.length - 1; i++) { if (rowObject[pos[i]].getWeight() > rowObject[pos[i + 1]].getWeight()) { int temp = pos[i]; pos[i] = pos[i + 1]; pos[i + 1] = temp; swapped = true; } } } for (int i = 0; i < pos.length; i++) { rowObject[pos[i]].setColumn(i); if ((i > _vMax) && (rowObject[pos[i]].getUplinks().size() == 0) && (rowObject[pos[i]].getDownlinks().size() == 0)) { if (getColumns(rows - 1) > _vMax) { rows++; } rowObject[pos[i]].setRank(rows - 1); } else { rowObject[pos[i]].setLocation(new Point(xPos, yPos)); xPos += rowObject[pos[i]].getSize().getWidth() + getHGap(); } } yPos += getRowHeight(curRow) + getVGap(); } } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 17,594 |
1 | public void shouldAllowClosingInputStreamTwice() throws IOException { OutputStream outputStream = fileSystem.createOutputStream(_("hello"), OutputMode.OVERWRITE); outputStream.write(new byte[] { 1, 2, 3 }); outputStream.close(); InputStream inputStream = fileSystem.createInputStream(_("hello")); ByteArrayOutputStream buffer = new ByteArrayOutputStream(); IOUtils.copy(inputStream, buffer); inputStream.close(); inputStream.close(); } | private void copy(FileInfo inputFile, FileInfo outputFile) { try { FileReader in = new FileReader(inputFile.file); FileWriter out = new FileWriter(outputFile.file); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); outputFile.file.setLastModified(inputFile.lastModified); } catch (IOException e) { } } | 17,595 |
0 | public File sendPayload(SoapEnvelope payload, URL url) throws IOException { URLConnection conn = null; File tempFile = null; Logger l = Logger.instance(); String className = getClass().getName(); l.log(Logger.DEBUG, loggerPrefix, className + ".sendPayload", "sending payload to " + url.toString()); try { conn = url.openConnection(); conn.setDoOutput(true); payload.writeTo(conn.getOutputStream()); tempFile = readIntoTempFile(conn.getInputStream()); } catch (IOException ioe) { l.log(Logger.ERROR, loggerPrefix, className + ".sendPayload", ioe); throw ioe; } finally { conn = null; } l.log(Logger.DEBUG, loggerPrefix, className + ".sendPayload", "received response"); return tempFile; } | public DataRecord addRecord(InputStream input) throws DataStoreException { File temporary = null; try { temporary = newTemporaryFile(); DataIdentifier tempId = new DataIdentifier(temporary.getName()); usesIdentifier(tempId); long length = 0; MessageDigest digest = MessageDigest.getInstance(DIGEST); OutputStream output = new DigestOutputStream(new FileOutputStream(temporary), digest); try { length = IOUtils.copyLarge(input, output); } finally { output.close(); } DataIdentifier identifier = new DataIdentifier(digest.digest()); File file; synchronized (this) { usesIdentifier(identifier); file = getFile(identifier); System.out.println("new file name: " + file.getName()); File parent = file.getParentFile(); System.out.println("parent file: " + file.getParentFile().getName()); if (!parent.isDirectory()) { parent.mkdirs(); } if (!file.exists()) { temporary.renameTo(file); if (!file.exists()) { throw new IOException("Can not rename " + temporary.getAbsolutePath() + " to " + file.getAbsolutePath() + " (media read only?)"); } } else { long now = System.currentTimeMillis(); if (file.lastModified() < now) { file.setLastModified(now); } } if (!file.isFile()) { throw new IOException("Not a file: " + file); } if (file.length() != length) { throw new IOException(DIGEST + " collision: " + file); } } inUse.remove(tempId); return new FileDataRecord(identifier, file); } catch (NoSuchAlgorithmException e) { throw new DataStoreException(DIGEST + " not available", e); } catch (IOException e) { throw new DataStoreException("Could not add record", e); } finally { if (temporary != null) { temporary.delete(); } } } | 17,596 |
0 | public static String calculateHA2(String uri) { try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(getBytes("GET", ISO_8859_1)); md.update((byte) ':'); md.update(getBytes(uri, ISO_8859_1)); return toHexString(md.digest()); } catch (NoSuchAlgorithmException err) { throw new RuntimeException(err); } } | private static void main(String[] args) { try { File f = new File("test.txt"); if (f.exists()) { throw new IOException(f + " already exists. I don't want to overwrite it."); } StraightStreamReader in; char[] cbuf = new char[0x1000]; int read; int totRead; FileOutputStream out = new FileOutputStream(f); for (int i = 0x00; i < 0x100; i++) { out.write(i); } out.close(); in = new StraightStreamReader(new FileInputStream(f)); for (int i = 0x00; i < 0x100; i++) { read = in.read(); if (read != i) { System.err.println("Error: " + i + " read as " + read); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = in.read(cbuf); if (totRead != 0x100) { System.err.println("Simple buffered read did not read the full amount: 0x" + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 7)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); f.delete(); } catch (IOException x) { System.err.println(x.getMessage()); } } | 17,597 |
0 | public static boolean copyFile(File from, File tu) { final int BUFFER_SIZE = 4096; byte[] buffer = new byte[BUFFER_SIZE]; try { FileInputStream in = new FileInputStream(from); FileOutputStream out = new FileOutputStream(tu); int read; while ((read = in.read(buffer)) != -1) { out.write(buffer, 0, read); } in.close(); out.close(); } catch (IOException e) { return false; } return true; } | public void downloadFtpFile(SynchrnServerVO synchrnServerVO, String fileNm) throws Exception { FTPClient ftpClient = new FTPClient(); ftpClient.setControlEncoding("euc-kr"); if (!EgovWebUtil.isIPAddress(synchrnServerVO.getServerIp())) { throw new RuntimeException("IP is needed. (" + synchrnServerVO.getServerIp() + ")"); } InetAddress host = InetAddress.getByName(synchrnServerVO.getServerIp()); ftpClient.connect(host, Integer.parseInt(synchrnServerVO.getServerPort())); ftpClient.login(synchrnServerVO.getFtpId(), synchrnServerVO.getFtpPassword()); ftpClient.changeWorkingDirectory(synchrnServerVO.getSynchrnLc()); File downFile = new File(EgovWebUtil.filePathBlackList(synchrnServerVO.getFilePath() + fileNm)); OutputStream outputStream = null; try { outputStream = new FileOutputStream(downFile); ftpClient.retrieveFile(fileNm, outputStream); } catch (Exception e) { System.out.println(e); } finally { if (outputStream != null) outputStream.close(); } ftpClient.logout(); } | 17,598 |
0 | protected String readFileUsingHttp(String fileUrlName) { String response = ""; try { URL url = new URL(fileUrlName); URLConnection connection = url.openConnection(); HttpURLConnection httpConn = (HttpURLConnection) connection; httpConn.setRequestProperty("Content-Type", "text/html"); httpConn.setRequestProperty("Content-Length", "0"); httpConn.setRequestMethod("GET"); httpConn.setDoOutput(true); httpConn.setDoInput(true); httpConn.setAllowUserInteraction(false); InputStreamReader isr = new InputStreamReader(httpConn.getInputStream()); BufferedReader in = new BufferedReader(isr); String inputLine = ""; while ((inputLine = in.readLine()) != null) { response += inputLine + "\n"; } if (response.endsWith("\n")) { response = response.substring(0, response.length() - 1); } in.close(); } catch (Exception x) { x.printStackTrace(); } return response; } | public static void main(String[] args) throws Exception { String urlString = "http://php.tech.sina.com.cn/download/d_load.php?d_id=7877&down_id=151542"; urlString = EncodeUtils.encodeURL(urlString); URL url = new URL(urlString); System.out.println("第一次：" + url); HttpURLConnection conn = (HttpURLConnection) url.openConnection(); HttpURLConnection.setFollowRedirects(true); Map req = conn.getRequestProperties(); System.out.println("第一次请求头："); printMap(req); conn.connect(); System.out.println("第一次响应："); System.out.println(conn.getResponseMessage()); int code = conn.getResponseCode(); System.out.println("第一次code:" + code); printMap(conn.getHeaderFields()); System.out.println(conn.getURL().getFile()); if (code == 404 && !(conn.getURL() + "").equals(urlString)) { System.out.println(conn.getURL()); String tmp = URLEncoder.encode(conn.getURL().toString(), "gbk"); System.out.println(URLEncoder.encode("在线音乐播放脚本", "GBK")); System.out.println(tmp); url = new URL(tmp); System.out.println("第二次：" + url); conn = (HttpURLConnection) url.openConnection(); System.out.println("第二次响应："); System.out.println("code:" + code); printMap(conn.getHeaderFields()); } } | 17,599 |
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