label int64 0 1 | func1 stringlengths 173 53.1k | func2 stringlengths 173 53.1k | id int64 0 901k |
|---|---|---|---|
1 | public static String hashMD5(String password) { String hashword = null; try { MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(password.getBytes()); BigInteger hash = new BigInteger(1, md5.digest()); hashword = hash.toString(16); } catch (NoSuchAlgorithmException nsae) { } return hashword; } | public static String getMD5(String text) { if (text == null) { return null; } String result = null; try { MessageDigest md5 = MessageDigest.getInstance(ALG_MD5); md5.update(text.getBytes(ENCODING)); result = "" + new BigInteger(1, md5.digest()).toString(16); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } catch (UnsupportedEncodingException e) { e.printStackTrace(); } return result; } | 18,500 |
0 | public String postData(String url, List<NameValuePair> nameValuePairs) { HttpClient httpclient = new DefaultHttpClient(); HttpPost httppost = new HttpPost(url); StringBuilder sb = new StringBuilder(); try { httppost.setEntity(new UrlEncodedFormEntity(nameValuePairs)); HttpResponse response = httpclient.execute(httppost); Header[] headers = response.getAllHeaders(); for (int i = 0; i < headers.length; i++) { Log.i(TAG, "HEADER: " + headers[i].getName() + " - " + headers[i].getValue()); } InputStream is = response.getEntity().getContent(); BufferedReader reader = new BufferedReader(new InputStreamReader(is)); String line = ""; while ((line = reader.readLine()) != null) { System.out.println("Parsing line... " + line); sb.append(line); if (line.contains("<html xmlns:fn")) { String gtinCode = line.substring(line.indexOf("GLN:") + 165, line.indexOf("GLN:") + 176); Log.i(TAG, "OUT: " + gtinCode); break; } } Log.i(TAG, "Post Communication OK"); } catch (ClientProtocolException e) { Log.e(TAG, "ClientProtocolException ", e); } catch (IOException e) { Log.e(TAG, "HTTP Not Available", e); } return sb.toString(); } | private static String appletLoad(String file, Output OUT) { if (!urlpath.endsWith("/")) { urlpath += '/'; } if (!urlpath.startsWith("http://")) { urlpath = "http://" + urlpath; } String url = ""; if (file.equals("languages.txt")) { url = urlpath + file; } else { url = urlpath + "users/" + file; } try { StringBuffer sb = new StringBuffer(2000); BufferedReader br = new BufferedReader(new InputStreamReader(new URL(url).openStream())); String a; while ((a = br.readLine()) != null) { sb.append(a).append('\n'); } return sb.toString(); } catch (Exception e) { OUT.println("load failed for file->" + file); } return ""; } | 18,501 |
1 | public static File[] splitFile(FileValidator validator, File source, long target_length, File todir, String prefix) { if (target_length == 0) return null; if (todir == null) { todir = new File(System.getProperty("java.io.tmpdir")); } if (prefix == null || prefix.equals("")) { prefix = source.getName(); } Vector result = new Vector(); FileOutputStream fos = null; FileInputStream fis = null; try { fis = new FileInputStream(source); byte[] bytes = new byte[CACHE_SIZE]; long current_target_size = 0; int current_target_nb = 1; int nbread = -1; try { File f = new File(todir, prefix + i18n.getString("targetname_suffix") + current_target_nb); if (!validator.verifyFile(f)) return null; result.add(f); fos = new FileOutputStream(f); while ((nbread = fis.read(bytes)) > -1) { if ((current_target_size + nbread) > target_length) { int limit = (int) (target_length - current_target_size); fos.write(bytes, 0, limit); fos.close(); current_target_nb++; current_target_size = 0; f = new File(todir, prefix + "_" + current_target_nb); if (!validator.verifyFile(f)) return null; result.add(f); fos = new FileOutputStream(f); fos.write(bytes, limit, nbread - limit); current_target_size += nbread - limit; } else { fos.write(bytes, 0, nbread); current_target_size += nbread; } } } catch (IOException ioe) { JOptionPane.showMessageDialog(null, ioe, i18n.getString("Failure"), JOptionPane.ERROR_MESSAGE); } finally { try { if (fos != null) fos.close(); } catch (IOException e) { } try { if (fis != null) fis.close(); } catch (IOException e) { } } } catch (Exception e) { JOptionPane.showMessageDialog(null, e, i18n.getString("Failure"), JOptionPane.ERROR_MESSAGE); } finally { try { if (fos != null) fos.close(); } catch (IOException e) { } } File[] fresult = null; if (result.size() > 0) { fresult = new File[result.size()]; fresult = (File[]) result.toArray(fresult); } return fresult; } | public void createZip(String baseDir, String objFileName) throws Exception { logger.info("createZip: [ " + baseDir + "] [" + objFileName + "]"); baseDir = baseDir + "/" + timesmpt; File folderObject = new File(baseDir); if (folderObject.exists()) { List<?> fileList = getSubFiles(new File(baseDir)); ZipOutputStream zos = new ZipOutputStream(new FileOutputStream(objFileName)); ZipEntry ze = null; byte[] buf = new byte[1024]; int readLen = 0; for (int i = 0; i < fileList.size(); i++) { File f = (File) fileList.get(i); ze = new ZipEntry(getAbsFileName(baseDir, f)); ze.setSize(f.length()); ze.setTime(f.lastModified()); zos.putNextEntry(ze); InputStream is = new BufferedInputStream(new FileInputStream(f)); while ((readLen = is.read(buf, 0, 1024)) != -1) { zos.write(buf, 0, readLen); } is.close(); } zos.close(); } else { throw new Exception("this folder isnot exist!"); } } | 18,502 |
1 | public static void gunzip() throws Exception { System.out.println("gunzip()"); GZIPInputStream zipin = new GZIPInputStream(new FileInputStream("/zip/myzip.gz")); byte buffer[] = new byte[BLOCKSIZE]; FileOutputStream out = new FileOutputStream("/zip/covers"); for (int length; (length = zipin.read(buffer, 0, BLOCKSIZE)) != -1; ) out.write(buffer, 0, length); out.close(); zipin.close(); } | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 18,503 |
0 | public Leilao insertLeilao(Leilao leilao) throws SQLException { Connection conn = null; String insert = "insert into Leilao (idleilao, atividade_idatividade, datainicio, datafim) " + "values " + "(nextval('seq_leilao'), " + leilao.getAtividade().getIdAtividade() + ", '" + leilao.getDataInicio() + "', '" + leilao.getDataFim() + "')"; try { conn = connectionFactory.getConnection(true); conn.setAutoCommit(false); Statement stmt = conn.createStatement(); Integer result = stmt.executeUpdate(insert); if (result == 1) { String sqlSelect = "select last_value from seq_leilao"; ResultSet rs = stmt.executeQuery(sqlSelect); while (rs.next()) { leilao.setIdLeilao(rs.getInt("last_value")); } } conn.commit(); } catch (SQLException e) { conn.rollback(); throw e; } finally { conn.close(); } return null; } | static String hash(String text) { try { StringBuffer plugins = new StringBuffer(); for (PlayPlugin plugin : Play.plugins) { plugins.append(plugin.getClass().getName()); } MessageDigest messageDigest = MessageDigest.getInstance("MD5"); messageDigest.reset(); messageDigest.update((Play.version + plugins.toString() + text).getBytes("utf-8")); byte[] digest = messageDigest.digest(); StringBuilder builder = new StringBuilder(); for (int i = 0; i < digest.length; ++i) { int value = digest[i]; if (value < 0) { value += 256; } builder.append(Integer.toHexString(value)); } return builder.toString(); } catch (Exception e) { throw new RuntimeException(e); } } | 18,504 |
1 | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | protected static URL[] createUrls(URL jarUrls[]) { ArrayList<URL> additionalUrls = new ArrayList<URL>(Arrays.asList(jarUrls)); for (URL ju : jarUrls) { try { JarFile jar = new JarFile(ju.getFile()); Enumeration<JarEntry> entries = jar.entries(); while (entries.hasMoreElements()) { JarEntry j = entries.nextElement(); if (j.isDirectory()) continue; if (j.getName().startsWith("lib/") && j.getName().endsWith(".jar")) { URL url = new URL("jar:" + ju.getProtocol() + ":" + ju.getFile() + "!/" + j.getName()); InputStream is = url.openStream(); File tmpFile = File.createTempFile("SCDeploy", ".jar"); FileOutputStream fos = new FileOutputStream(tmpFile); IOUtils.copy(is, fos); is.close(); fos.close(); additionalUrls.add(new URL("file://" + tmpFile.getAbsolutePath())); } } } catch (IOException e) { } } return additionalUrls.toArray(new URL[] {}); } | 18,505 |
0 | public void copy(String pathFileIn, String pathFileOut) { try { File inputFile = new File(pathFileIn); File outputFile = new File(pathFileOut); FileReader in = new FileReader(inputFile); File outDir = new File(DirOut); if (!outDir.exists()) outDir.mkdirs(); FileWriter out = new FileWriter(outputFile); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); this.printColumn(inputFile.getName(), outputFile.getPath()); } catch (Exception e) { e.printStackTrace(); } } | protected synchronized AbstractBaseObject insert(AbstractBaseObject obj) throws ApplicationException { PreparedStatement preStat = null; StringBuffer sqlStat = new StringBuffer(); DmsRelationalWord tmpDmsRelationalWord = (DmsRelationalWord) ((DmsRelationalWord) obj).clone(); synchronized (dbConn) { try { Integer nextID = getNextPrimaryID(); Timestamp currTime = Utility.getCurrentTimestamp(); sqlStat.append("INSERT "); sqlStat.append("INTO DMS_RELATIONAL_WORD(ID, RECORD_STATUS, UPDATE_COUNT, CREATOR_ID, CREATE_DATE, UPDATER_ID, UPDATE_DATE, WORD, PARENT_ID, TYPE) "); sqlStat.append("VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?) "); preStat = dbConn.prepareStatement(sqlStat.toString(), ResultSet.TYPE_SCROLL_INSENSITIVE, ResultSet.CONCUR_READ_ONLY); setPrepareStatement(preStat, 1, nextID); setPrepareStatement(preStat, 2, tmpDmsRelationalWord.getRecordStatus()); setPrepareStatement(preStat, 3, new Integer(0)); setPrepareStatement(preStat, 4, tmpDmsRelationalWord.getCreatorID()); setPrepareStatement(preStat, 5, currTime); setPrepareStatement(preStat, 6, tmpDmsRelationalWord.getUpdaterID()); setPrepareStatement(preStat, 7, currTime); if (tmpDmsRelationalWord.getWord() == null || "".equals(tmpDmsRelationalWord.getWord().trim())) { return null; } setPrepareStatement(preStat, 8, tmpDmsRelationalWord.getWord()); setPrepareStatement(preStat, 9, tmpDmsRelationalWord.getParentID()); setPrepareStatement(preStat, 10, tmpDmsRelationalWord.getType()); preStat.executeUpdate(); tmpDmsRelationalWord.setID(nextID); tmpDmsRelationalWord.setCreatorID(tmpDmsRelationalWord.getCreatorID()); tmpDmsRelationalWord.setCreateDate(currTime); tmpDmsRelationalWord.setUpdaterID(tmpDmsRelationalWord.getUpdaterID()); tmpDmsRelationalWord.setUpdateDate(currTime); tmpDmsRelationalWord.setUpdateCount(new Integer(0)); tmpDmsRelationalWord.setCreatorName(UserInfoFactory.getUserFullName(tmpDmsRelationalWord.getCreatorID())); tmpDmsRelationalWord.setUpdaterName(UserInfoFactory.getUserFullName(tmpDmsRelationalWord.getUpdaterID())); dbConn.commit(); return (tmpDmsRelationalWord); } catch (Exception e) { try { dbConn.rollback(); } catch (Exception ee) { } log.error(e, e); throw new ApplicationException(ErrorConstant.DB_INSERT_ERROR, e); } finally { try { preStat.close(); } catch (Exception ignore) { } finally { preStat = null; } } } } | 18,506 |
1 | private static MapEntry<String, Properties> loadFpmConf() throws ConfigurationReadException { MapEntry<String, Properties> ret = null; Scanner sc = new Scanner(CONF_PATHS).useDelimiter(SEP_P); String prev = ""; while (sc.hasNext() && !hasLoaded) { Properties fpmConf = null; boolean relative = false; String path = sc.next(); if (path.startsWith(PREV_P)) { path = path.replace(PREV_P, prev.substring(0, prev.length() - 1)); } else if (path.startsWith(REL_P)) { path = path.replace(REL_P + FS, ""); relative = true; } else if (path.contains(HOME_P)) { path = path.replace(HOME_P, USER_HOME); } prev = path; path = path.concat(MAIN_CONF_FILE); try { InputStream is = null; if (relative) { is = ClassLoader.getSystemResourceAsStream(path); path = getSystemConfDir(); Strings.getOne().createPath(path); path += MAIN_CONF_FILE; FileOutputStream os = new FileOutputStream(path); IOUtils.copy(is, os); os.flush(); os.close(); os = null; } else { is = new FileInputStream(path); } fpmConf = new Properties(); fpmConf.load(is); if (fpmConf.isEmpty()) { throw new ConfigurationReadException(); } ret = new MapEntry<String, Properties>(path, fpmConf); hasLoaded = true; } catch (FileNotFoundException e) { fpmConf = null; singleton = null; hasLoaded = false; } catch (IOException e) { throw new ConfigurationReadException(); } } return ret; } | public static boolean predictDataSet(String completePath, String Type, String predictionOutputFileName, String slopeOneDataFolderName) { try { if (Type.equalsIgnoreCase("Qualifying")) { File inputFile = new File(completePath + fSep + "SmartGRAPE" + fSep + "CompleteQualifyingDataInByteFormat.txt"); FileChannel inC = new FileInputStream(inputFile).getChannel(); int filesize = (int) inC.size(); TShortObjectHashMap qualMap = new TShortObjectHashMap(17770, 1); ByteBuffer qualmappedfile = inC.map(FileChannel.MapMode.READ_ONLY, 0, filesize); while (qualmappedfile.hasRemaining()) { short movie = qualmappedfile.getShort(); int customer = qualmappedfile.getInt(); if (qualMap.containsKey(movie)) { TIntArrayList arr = (TIntArrayList) qualMap.get(movie); arr.add(customer); qualMap.put(movie, arr); } else { TIntArrayList arr = new TIntArrayList(); arr.add(customer); qualMap.put(movie, arr); } } System.out.println("Populated qualifying hashmap"); File outFile = new File(completePath + fSep + "SmartGRAPE" + fSep + predictionOutputFileName); FileChannel outC = new FileOutputStream(outFile).getChannel(); ByteBuffer buf; TShortObjectHashMap movieDiffStats; double finalPrediction; short[] movies = qualMap.keys(); Arrays.sort(movies); for (int i = 0; i < movies.length; i++) { short movieToProcess = movies[i]; movieDiffStats = loadMovieDiffStats(completePath, movieToProcess, slopeOneDataFolderName); System.out.println(movieDiffStats.size()); TIntArrayList customersToProcess = (TIntArrayList) qualMap.get(movieToProcess); for (int j = 0; j < customersToProcess.size(); j++) { int customerToProcess = customersToProcess.getQuick(j); finalPrediction = predictSlopeOneRating(customerToProcess, movieDiffStats); if (finalPrediction == finalPrediction) { if (finalPrediction < 1.0) finalPrediction = 1.0; else if (finalPrediction > 5.0) finalPrediction = 5.0; } else finalPrediction = GetAveragePrediction(movieToProcess); buf = ByteBuffer.allocate(10); buf.putShort(movieToProcess); buf.putInt(customerToProcess); buf.putFloat(new Double(finalPrediction).floatValue()); buf.flip(); outC.write(buf); } } outC.close(); return true; } else if (Type.equalsIgnoreCase("Probe")) { File inputFile = new File(completePath + fSep + "SmartGRAPE" + fSep + "CompleteProbeDataInByteFormat.txt"); FileChannel inC = new FileInputStream(inputFile).getChannel(); int filesize = (int) inC.size(); TShortObjectHashMap probeMap = new TShortObjectHashMap(17770, 1); ByteBuffer probemappedfile = inC.map(FileChannel.MapMode.READ_ONLY, 0, filesize); while (probemappedfile.hasRemaining()) { short movie = probemappedfile.getShort(); int customer = probemappedfile.getInt(); byte rating = probemappedfile.get(); if (probeMap.containsKey(movie)) { TIntByteHashMap actualRatings = (TIntByteHashMap) probeMap.get(movie); actualRatings.put(customer, rating); probeMap.put(movie, actualRatings); } else { TIntByteHashMap actualRatings = new TIntByteHashMap(); actualRatings.put(customer, rating); probeMap.put(movie, actualRatings); } } System.out.println("Populated probe hashmap"); File outFile = new File(completePath + fSep + "SmartGRAPE" + fSep + predictionOutputFileName); FileChannel outC = new FileOutputStream(outFile).getChannel(); ByteBuffer buf; double finalPrediction; TShortObjectHashMap movieDiffStats; short[] movies = probeMap.keys(); Arrays.sort(movies); for (int i = 0; i < movies.length; i++) { short movieToProcess = movies[i]; movieDiffStats = loadMovieDiffStats(completePath, movieToProcess, slopeOneDataFolderName); TIntByteHashMap custRatingsToProcess = (TIntByteHashMap) probeMap.get(movieToProcess); TIntArrayList customersToProcess = new TIntArrayList(custRatingsToProcess.keys()); for (int j = 0; j < customersToProcess.size(); j++) { int customerToProcess = customersToProcess.getQuick(j); byte rating = custRatingsToProcess.get(customerToProcess); finalPrediction = predictSlopeOneRating(customerToProcess, movieDiffStats); if (finalPrediction == finalPrediction) { if (finalPrediction < 1.0) finalPrediction = 1.0; else if (finalPrediction > 5.0) finalPrediction = 5.0; } else finalPrediction = GetAveragePrediction(movieToProcess); buf = ByteBuffer.allocate(11); buf.putShort(movieToProcess); buf.putInt(customerToProcess); buf.put(rating); buf.putFloat(new Double(finalPrediction).floatValue()); buf.flip(); outC.write(buf); } } outC.close(); return true; } else return false; } catch (Exception e) { e.printStackTrace(); return false; } } | 18,507 |
1 | public static boolean copyFile(String fileIn, String fileOut) { FileChannel in = null; FileChannel out = null; boolean retour = false; try { in = new FileInputStream(fileIn).getChannel(); out = new FileOutputStream(fileOut).getChannel(); in.transferTo(0, in.size(), out); in.close(); out.close(); retour = true; } catch (IOException e) { System.err.println("File : " + fileIn); e.printStackTrace(); } return retour; } | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | 18,508 |
0 | private boolean load(URL url) { try { URLConnection connection = url.openConnection(); parser = new PDFParser(connection.getInputStream()); } catch (IOException e) { e.printStackTrace(); return false; } return true; } | public static Chunk updateLastSend(Chunk c) throws Exception { DBConnectionManager dbm = null; Connection conn = null; PreparedStatement stmt = null; Chunk ret = null; String SQL = "UPDATE CHUNK SET SENT=? WHERE FILEHASH=? AND STARTOFF=? AND LENGTH=?"; log.debug("update chunk last sent for chunk " + c.getHash() + " startoff " + c.getStartOffset()); try { dbm = DBConnectionManager.getInstance(); conn = dbm.getConnection("satmule"); stmt = conn.prepareStatement(SQL); stmt.setDate(1, new java.sql.Date(c.getLastSend().getTime())); stmt.setString(2, c.getHash()); stmt.setLong(3, c.getStartOffset()); stmt.setLong(4, c.getSize()); stmt.executeUpdate(); conn.commit(); stmt.close(); dbm.freeConnection("satmule", conn); } catch (Exception e) { log.error("Error while updating chunk " + c.getHash() + "offset:" + c.getStartOffset() + "SQL error: " + SQL, e); Exception excep; if (dbm == null) excep = new Exception("Could not obtain pool object DbConnectionManager"); else if (conn == null) excep = new Exception("The Db connection pool could not obtain a database connection"); else { conn.rollback(); excep = new Exception("SQL Error : " + SQL + " error: " + e); dbm.freeConnection("satmule", conn); } throw excep; } return ret; } | 18,509 |
0 | public void testTransactions0010() throws Exception { Connection cx = getConnection(); dropTable("#t0010"); Statement stmt = cx.createStatement(); stmt.executeUpdate("create table #t0010 " + " (i integer not null, " + " s char(10) not null) "); cx.setAutoCommit(false); PreparedStatement pStmt = cx.prepareStatement("insert into #t0010 values (?, ?)"); int rowsToAdd = 8; final String theString = "abcdefghijklmnopqrstuvwxyz"; int count = 0; for (int i = 1; i <= rowsToAdd; i++) { pStmt.setInt(1, i); pStmt.setString(2, theString.substring(0, i)); count += pStmt.executeUpdate(); } assertTrue(count == rowsToAdd); cx.rollback(); stmt = cx.createStatement(); ResultSet rs = stmt.executeQuery("select s, i from #t0010"); assertNotNull(rs); count = 0; while (rs.next()) { count++; assertTrue(rs.getString(1).trim().length() == rs.getInt(2)); } assertTrue(count == 0); cx.commit(); rowsToAdd = 6; for (int j = 1; j <= 2; j++) { count = 0; for (int i = 1; i <= rowsToAdd; i++) { pStmt.setInt(1, i + ((j - 1) * rowsToAdd)); pStmt.setString(2, theString.substring(0, i)); count += pStmt.executeUpdate(); } assertTrue(count == rowsToAdd); cx.commit(); } rs = stmt.executeQuery("select s, i from #t0010"); count = 0; while (rs.next()) { count++; int i = rs.getInt(2); if (i > rowsToAdd) i -= rowsToAdd; assertTrue(rs.getString(1).trim().length() == i); } assertTrue(count == (2 * rowsToAdd)); cx.commit(); cx.setAutoCommit(true); } | public static void main(String argv[]) { Matrix A, B, C, Z, O, I, R, S, X, SUB, M, T, SQ, DEF, SOL; int errorCount = 0; int warningCount = 0; double tmp, s; double[] columnwise = { 1., 2., 3., 4., 5., 6., 7., 8., 9., 10., 11., 12. }; double[] rowwise = { 1., 4., 7., 10., 2., 5., 8., 11., 3., 6., 9., 12. }; double[][] avals = { { 1., 4., 7., 10. }, { 2., 5., 8., 11. }, { 3., 6., 9., 12. } }; double[][] rankdef = avals; double[][] tvals = { { 1., 2., 3. }, { 4., 5., 6. }, { 7., 8., 9. }, { 10., 11., 12. } }; double[][] subavals = { { 5., 8., 11. }, { 6., 9., 12. } }; double[][] rvals = { { 1., 4., 7. }, { 2., 5., 8., 11. }, { 3., 6., 9., 12. } }; double[][] pvals = { { 1., 1., 1. }, { 1., 2., 3. }, { 1., 3., 6. } }; double[][] ivals = { { 1., 0., 0., 0. }, { 0., 1., 0., 0. }, { 0., 0., 1., 0. } }; double[][] evals = { { 0., 1., 0., 0. }, { 1., 0., 2.e-7, 0. }, { 0., -2.e-7, 0., 1. }, { 0., 0., 1., 0. } }; double[][] square = { { 166., 188., 210. }, { 188., 214., 240. }, { 210., 240., 270. } }; double[][] sqSolution = { { 13. }, { 15. } }; double[][] condmat = { { 1., 3. }, { 7., 9. } }; int rows = 3, cols = 4; int invalidld = 5; int raggedr = 0; int raggedc = 4; int validld = 3; int nonconformld = 4; int ib = 1, ie = 2, jb = 1, je = 3; int[] rowindexset = { 1, 2 }; int[] badrowindexset = { 1, 3 }; int[] columnindexset = { 1, 2, 3 }; int[] badcolumnindexset = { 1, 2, 4 }; double columnsummax = 33.; double rowsummax = 30.; double sumofdiagonals = 15; double sumofsquares = 650; print("\nTesting constructors and constructor-like methods...\n"); try { A = new Matrix(columnwise, invalidld); errorCount = try_failure(errorCount, "Catch invalid length in packed constructor... ", "exception not thrown for invalid input"); } catch (IllegalArgumentException e) { try_success("Catch invalid length in packed constructor... ", e.getMessage()); } try { A = new Matrix(rvals); tmp = A.get(raggedr, raggedc); } catch (IllegalArgumentException e) { try_success("Catch ragged input to default constructor... ", e.getMessage()); } catch (java.lang.ArrayIndexOutOfBoundsException e) { errorCount = try_failure(errorCount, "Catch ragged input to constructor... ", "exception not thrown in construction...ArrayIndexOutOfBoundsException thrown later"); } try { A = Matrix.constructWithCopy(rvals); tmp = A.get(raggedr, raggedc); } catch (IllegalArgumentException e) { try_success("Catch ragged input to constructWithCopy... ", e.getMessage()); } catch (java.lang.ArrayIndexOutOfBoundsException e) { errorCount = try_failure(errorCount, "Catch ragged input to constructWithCopy... ", "exception not thrown in construction...ArrayIndexOutOfBoundsException thrown later"); } A = new Matrix(columnwise, validld); B = new Matrix(avals); tmp = B.get(0, 0); avals[0][0] = 0.0; C = B.minus(A); avals[0][0] = tmp; B = Matrix.constructWithCopy(avals); tmp = B.get(0, 0); avals[0][0] = 0.0; if ((tmp - B.get(0, 0)) != 0.0) { errorCount = try_failure(errorCount, "constructWithCopy... ", "copy not effected... data visible outside"); } else { try_success("constructWithCopy... ", ""); } avals[0][0] = columnwise[0]; I = new Matrix(ivals); try { check(I, Matrix.identity(3, 4)); try_success("identity... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "identity... ", "identity Matrix not successfully created"); } print("\nTesting access methods...\n"); B = new Matrix(avals); if (B.getRowDimension() != rows) { errorCount = try_failure(errorCount, "getRowDimension... ", ""); } else { try_success("getRowDimension... ", ""); } if (B.getColumnDimension() != cols) { errorCount = try_failure(errorCount, "getColumnDimension... ", ""); } else { try_success("getColumnDimension... ", ""); } B = new Matrix(avals); double[][] barray = B.getArray(); if (barray != avals) { errorCount = try_failure(errorCount, "getArray... ", ""); } else { try_success("getArray... ", ""); } barray = B.getArrayCopy(); if (barray == avals) { errorCount = try_failure(errorCount, "getArrayCopy... ", "data not (deep) copied"); } try { check(barray, avals); try_success("getArrayCopy... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "getArrayCopy... ", "data not successfully (deep) copied"); } double[] bpacked = B.getColumnPackedCopy(); try { check(bpacked, columnwise); try_success("getColumnPackedCopy... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "getColumnPackedCopy... ", "data not successfully (deep) copied by columns"); } bpacked = B.getRowPackedCopy(); try { check(bpacked, rowwise); try_success("getRowPackedCopy... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "getRowPackedCopy... ", "data not successfully (deep) copied by rows"); } try { tmp = B.get(B.getRowDimension(), B.getColumnDimension() - 1); errorCount = try_failure(errorCount, "get(int,int)... ", "OutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { tmp = B.get(B.getRowDimension() - 1, B.getColumnDimension()); errorCount = try_failure(errorCount, "get(int,int)... ", "OutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("get(int,int)... OutofBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "get(int,int)... ", "OutOfBoundsException expected but not thrown"); } try { if (B.get(B.getRowDimension() - 1, B.getColumnDimension() - 1) != avals[B.getRowDimension() - 1][B.getColumnDimension() - 1]) { errorCount = try_failure(errorCount, "get(int,int)... ", "Matrix entry (i,j) not successfully retreived"); } else { try_success("get(int,int)... ", ""); } } catch (java.lang.ArrayIndexOutOfBoundsException e) { errorCount = try_failure(errorCount, "get(int,int)... ", "Unexpected ArrayIndexOutOfBoundsException"); } SUB = new Matrix(subavals); try { M = B.getMatrix(ib, ie + B.getRowDimension() + 1, jb, je); errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { M = B.getMatrix(ib, ie, jb, je + B.getColumnDimension() + 1); errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("getMatrix(int,int,int,int)... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { M = B.getMatrix(ib, ie, jb, je); try { check(SUB, M); try_success("getMatrix(int,int,int,int)... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "submatrix not successfully retreived"); } } catch (java.lang.ArrayIndexOutOfBoundsException e) { errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "Unexpected ArrayIndexOutOfBoundsException"); } try { M = B.getMatrix(ib, ie, badcolumnindexset); errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { M = B.getMatrix(ib, ie + B.getRowDimension() + 1, columnindexset); errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("getMatrix(int,int,int[])... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { M = B.getMatrix(ib, ie, columnindexset); try { check(SUB, M); try_success("getMatrix(int,int,int[])... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "submatrix not successfully retreived"); } } catch (java.lang.ArrayIndexOutOfBoundsException e) { errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "Unexpected ArrayIndexOutOfBoundsException"); } try { M = B.getMatrix(badrowindexset, jb, je); errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { M = B.getMatrix(rowindexset, jb, je + B.getColumnDimension() + 1); errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("getMatrix(int[],int,int)... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { M = B.getMatrix(rowindexset, jb, je); try { check(SUB, M); try_success("getMatrix(int[],int,int)... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "submatrix not successfully retreived"); } } catch (java.lang.ArrayIndexOutOfBoundsException e) { errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "Unexpected ArrayIndexOutOfBoundsException"); } try { M = B.getMatrix(badrowindexset, columnindexset); errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { M = B.getMatrix(rowindexset, badcolumnindexset); errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("getMatrix(int[],int[])... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { M = B.getMatrix(rowindexset, columnindexset); try { check(SUB, M); try_success("getMatrix(int[],int[])... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "submatrix not successfully retreived"); } } catch (java.lang.ArrayIndexOutOfBoundsException e) { errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "Unexpected ArrayIndexOutOfBoundsException"); } try { B.set(B.getRowDimension(), B.getColumnDimension() - 1, 0.); errorCount = try_failure(errorCount, "set(int,int,double)... ", "OutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { B.set(B.getRowDimension() - 1, B.getColumnDimension(), 0.); errorCount = try_failure(errorCount, "set(int,int,double)... ", "OutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("set(int,int,double)... OutofBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "set(int,int,double)... ", "OutOfBoundsException expected but not thrown"); } try { B.set(ib, jb, 0.); tmp = B.get(ib, jb); try { check(tmp, 0.); try_success("set(int,int,double)... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "set(int,int,double)... ", "Matrix element not successfully set"); } } catch (java.lang.ArrayIndexOutOfBoundsException e1) { errorCount = try_failure(errorCount, "set(int,int,double)... ", "Unexpected ArrayIndexOutOfBoundsException"); } M = new Matrix(2, 3, 0.); try { B.setMatrix(ib, ie + B.getRowDimension() + 1, jb, je, M); errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { B.setMatrix(ib, ie, jb, je + B.getColumnDimension() + 1, M); errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("setMatrix(int,int,int,int,Matrix)... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { B.setMatrix(ib, ie, jb, je, M); try { check(M.minus(B.getMatrix(ib, ie, jb, je)), M); try_success("setMatrix(int,int,int,int,Matrix)... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "submatrix not successfully set"); } B.setMatrix(ib, ie, jb, je, SUB); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "Unexpected ArrayIndexOutOfBoundsException"); } try { B.setMatrix(ib, ie + B.getRowDimension() + 1, columnindexset, M); errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { B.setMatrix(ib, ie, badcolumnindexset, M); errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("setMatrix(int,int,int[],Matrix)... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { B.setMatrix(ib, ie, columnindexset, M); try { check(M.minus(B.getMatrix(ib, ie, columnindexset)), M); try_success("setMatrix(int,int,int[],Matrix)... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "submatrix not successfully set"); } B.setMatrix(ib, ie, jb, je, SUB); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "Unexpected ArrayIndexOutOfBoundsException"); } try { B.setMatrix(rowindexset, jb, je + B.getColumnDimension() + 1, M); errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { B.setMatrix(badrowindexset, jb, je, M); errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("setMatrix(int[],int,int,Matrix)... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { B.setMatrix(rowindexset, jb, je, M); try { check(M.minus(B.getMatrix(rowindexset, jb, je)), M); try_success("setMatrix(int[],int,int,Matrix)... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "submatrix not successfully set"); } B.setMatrix(ib, ie, jb, je, SUB); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "Unexpected ArrayIndexOutOfBoundsException"); } try { B.setMatrix(rowindexset, badcolumnindexset, M); errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { B.setMatrix(badrowindexset, columnindexset, M); errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("setMatrix(int[],int[],Matrix)... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { B.setMatrix(rowindexset, columnindexset, M); try { check(M.minus(B.getMatrix(rowindexset, columnindexset)), M); try_success("setMatrix(int[],int[],Matrix)... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "submatrix not successfully set"); } } catch (java.lang.ArrayIndexOutOfBoundsException e1) { errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "Unexpected ArrayIndexOutOfBoundsException"); } print("\nTesting array-like methods...\n"); S = new Matrix(columnwise, nonconformld); R = Matrix.random(A.getRowDimension(), A.getColumnDimension()); A = R; try { S = A.minus(S); errorCount = try_failure(errorCount, "minus conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("minus conformance check... ", ""); } if (A.minus(R).norm1() != 0.) { errorCount = try_failure(errorCount, "minus... ", "(difference of identical Matrices is nonzero,\nSubsequent use of minus should be suspect)"); } else { try_success("minus... ", ""); } A = R.copy(); A.minusEquals(R); Z = new Matrix(A.getRowDimension(), A.getColumnDimension()); try { A.minusEquals(S); errorCount = try_failure(errorCount, "minusEquals conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("minusEquals conformance check... ", ""); } if (A.minus(Z).norm1() != 0.) { errorCount = try_failure(errorCount, "minusEquals... ", "(difference of identical Matrices is nonzero,\nSubsequent use of minus should be suspect)"); } else { try_success("minusEquals... ", ""); } A = R.copy(); B = Matrix.random(A.getRowDimension(), A.getColumnDimension()); C = A.minus(B); try { S = A.plus(S); errorCount = try_failure(errorCount, "plus conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("plus conformance check... ", ""); } try { check(C.plus(B), A); try_success("plus... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "plus... ", "(C = A - B, but C + B != A)"); } C = A.minus(B); C.plusEquals(B); try { A.plusEquals(S); errorCount = try_failure(errorCount, "plusEquals conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("plusEquals conformance check... ", ""); } try { check(C, A); try_success("plusEquals... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "plusEquals... ", "(C = A - B, but C = C + B != A)"); } A = R.uminus(); try { check(A.plus(R), Z); try_success("uminus... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "uminus... ", "(-A + A != zeros)"); } A = R.copy(); O = new Matrix(A.getRowDimension(), A.getColumnDimension(), 1.0); C = A.arrayLeftDivide(R); try { S = A.arrayLeftDivide(S); errorCount = try_failure(errorCount, "arrayLeftDivide conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("arrayLeftDivide conformance check... ", ""); } try { check(C, O); try_success("arrayLeftDivide... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "arrayLeftDivide... ", "(M.\\M != ones)"); } try { A.arrayLeftDivideEquals(S); errorCount = try_failure(errorCount, "arrayLeftDivideEquals conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("arrayLeftDivideEquals conformance check... ", ""); } A.arrayLeftDivideEquals(R); try { check(A, O); try_success("arrayLeftDivideEquals... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "arrayLeftDivideEquals... ", "(M.\\M != ones)"); } A = R.copy(); try { A.arrayRightDivide(S); errorCount = try_failure(errorCount, "arrayRightDivide conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("arrayRightDivide conformance check... ", ""); } C = A.arrayRightDivide(R); try { check(C, O); try_success("arrayRightDivide... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "arrayRightDivide... ", "(M./M != ones)"); } try { A.arrayRightDivideEquals(S); errorCount = try_failure(errorCount, "arrayRightDivideEquals conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("arrayRightDivideEquals conformance check... ", ""); } A.arrayRightDivideEquals(R); try { check(A, O); try_success("arrayRightDivideEquals... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "arrayRightDivideEquals... ", "(M./M != ones)"); } A = R.copy(); B = Matrix.random(A.getRowDimension(), A.getColumnDimension()); try { S = A.arrayTimes(S); errorCount = try_failure(errorCount, "arrayTimes conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("arrayTimes conformance check... ", ""); } C = A.arrayTimes(B); try { check(C.arrayRightDivideEquals(B), A); try_success("arrayTimes... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "arrayTimes... ", "(A = R, C = A.*B, but C./B != A)"); } try { A.arrayTimesEquals(S); errorCount = try_failure(errorCount, "arrayTimesEquals conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("arrayTimesEquals conformance check... ", ""); } A.arrayTimesEquals(B); try { check(A.arrayRightDivideEquals(B), R); try_success("arrayTimesEquals... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "arrayTimesEquals... ", "(A = R, A = A.*B, but A./B != R)"); } print("\nTesting I/O methods...\n"); try { DecimalFormat fmt = new DecimalFormat("0.0000E00"); fmt.setDecimalFormatSymbols(new DecimalFormatSymbols(Locale.US)); PrintWriter FILE = new PrintWriter(new FileOutputStream("JamaTestMatrix.out")); A.print(FILE, fmt, 10); FILE.close(); R = Matrix.read(new BufferedReader(new FileReader("JamaTestMatrix.out"))); if (A.minus(R).norm1() < .001) { try_success("print()/read()...", ""); } else { errorCount = try_failure(errorCount, "print()/read()...", "Matrix read from file does not match Matrix printed to file"); } } catch (java.io.IOException ioe) { warningCount = try_warning(warningCount, "print()/read()...", "unexpected I/O error, unable to run print/read test; check write permission in current directory and retry"); } catch (Exception e) { try { e.printStackTrace(System.out); warningCount = try_warning(warningCount, "print()/read()...", "Formatting error... will try JDK1.1 reformulation..."); DecimalFormat fmt = new DecimalFormat("0.0000"); PrintWriter FILE = new PrintWriter(new FileOutputStream("JamaTestMatrix.out")); A.print(FILE, fmt, 10); FILE.close(); R = Matrix.read(new BufferedReader(new FileReader("JamaTestMatrix.out"))); if (A.minus(R).norm1() < .001) { try_success("print()/read()...", ""); } else { errorCount = try_failure(errorCount, "print()/read() (2nd attempt) ...", "Matrix read from file does not match Matrix printed to file"); } } catch (java.io.IOException ioe) { warningCount = try_warning(warningCount, "print()/read()...", "unexpected I/O error, unable to run print/read test; check write permission in current directory and retry"); } } R = Matrix.random(A.getRowDimension(), A.getColumnDimension()); String tmpname = "TMPMATRIX.serial"; try { ObjectOutputStream out = new ObjectOutputStream(new FileOutputStream(tmpname)); out.writeObject(R); ObjectInputStream sin = new ObjectInputStream(new FileInputStream(tmpname)); A = (Matrix) sin.readObject(); try { check(A, R); try_success("writeObject(Matrix)/readObject(Matrix)...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "writeObject(Matrix)/readObject(Matrix)...", "Matrix not serialized correctly"); } } catch (java.io.IOException ioe) { warningCount = try_warning(warningCount, "writeObject()/readObject()...", "unexpected I/O error, unable to run serialization test; check write permission in current directory and retry"); } catch (Exception e) { errorCount = try_failure(errorCount, "writeObject(Matrix)/readObject(Matrix)...", "unexpected error in serialization test"); } print("\nTesting linear algebra methods...\n"); A = new Matrix(columnwise, 3); T = new Matrix(tvals); T = A.transpose(); try { check(A.transpose(), T); try_success("transpose...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "transpose()...", "transpose unsuccessful"); } A.transpose(); try { check(A.norm1(), columnsummax); try_success("norm1...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "norm1()...", "incorrect norm calculation"); } try { check(A.normInf(), rowsummax); try_success("normInf()...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "normInf()...", "incorrect norm calculation"); } try { check(A.normF(), Math.sqrt(sumofsquares)); try_success("normF...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "normF()...", "incorrect norm calculation"); } try { check(A.trace(), sumofdiagonals); try_success("trace()...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "trace()...", "incorrect trace calculation"); } try { check(A.getMatrix(0, A.getRowDimension() - 1, 0, A.getRowDimension() - 1).det(), 0.); try_success("det()...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "det()...", "incorrect determinant calculation"); } SQ = new Matrix(square); try { check(A.times(A.transpose()), SQ); try_success("times(Matrix)...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "times(Matrix)...", "incorrect Matrix-Matrix product calculation"); } try { check(A.times(0.), Z); try_success("times(double)...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "times(double)...", "incorrect Matrix-scalar product calculation"); } A = new Matrix(columnwise, 4); QRDecomposition QR = A.qr(); R = QR.getR(); try { check(A, QR.getQ().times(R)); try_success("QRDecomposition...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "QRDecomposition...", "incorrect QR decomposition calculation"); } SingularValueDecomposition SVD = A.svd(); try { check(A, SVD.getU().times(SVD.getS().times(SVD.getV().transpose()))); try_success("SingularValueDecomposition...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "SingularValueDecomposition...", "incorrect singular value decomposition calculation"); } DEF = new Matrix(rankdef); try { check(DEF.rank(), Math.min(DEF.getRowDimension(), DEF.getColumnDimension()) - 1); try_success("rank()...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "rank()...", "incorrect rank calculation"); } B = new Matrix(condmat); SVD = B.svd(); double[] singularvalues = SVD.getSingularValues(); try { check(B.cond(), singularvalues[0] / singularvalues[Math.min(B.getRowDimension(), B.getColumnDimension()) - 1]); try_success("cond()...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "cond()...", "incorrect condition number calculation"); } int n = A.getColumnDimension(); A = A.getMatrix(0, n - 1, 0, n - 1); A.set(0, 0, 0.); LUDecomposition LU = A.lu(); try { check(A.getMatrix(LU.getPivot(), 0, n - 1), LU.getL().times(LU.getU())); try_success("LUDecomposition...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "LUDecomposition...", "incorrect LU decomposition calculation"); } X = A.inverse(); try { check(A.times(X), Matrix.identity(3, 3)); try_success("inverse()...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "inverse()...", "incorrect inverse calculation"); } O = new Matrix(SUB.getRowDimension(), 1, 1.0); SOL = new Matrix(sqSolution); SQ = SUB.getMatrix(0, SUB.getRowDimension() - 1, 0, SUB.getRowDimension() - 1); try { check(SQ.solve(SOL), O); try_success("solve()...", ""); } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "solve()...", e1.getMessage()); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "solve()...", e.getMessage()); } A = new Matrix(pvals); CholeskyDecomposition Chol = A.chol(); Matrix L = Chol.getL(); try { check(A, L.times(L.transpose())); try_success("CholeskyDecomposition...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "CholeskyDecomposition...", "incorrect Cholesky decomposition calculation"); } X = Chol.solve(Matrix.identity(3, 3)); try { check(A.times(X), Matrix.identity(3, 3)); try_success("CholeskyDecomposition solve()...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "CholeskyDecomposition solve()...", "incorrect Choleskydecomposition solve calculation"); } EigenvalueDecomposition Eig = A.eig(); Matrix D = Eig.getD(); Matrix V = Eig.getV(); try { check(A.times(V), V.times(D)); try_success("EigenvalueDecomposition (symmetric)...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "EigenvalueDecomposition (symmetric)...", "incorrect symmetric Eigenvalue decomposition calculation"); } A = new Matrix(evals); Eig = A.eig(); D = Eig.getD(); V = Eig.getV(); try { check(A.times(V), V.times(D)); try_success("EigenvalueDecomposition (nonsymmetric)...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "EigenvalueDecomposition (nonsymmetric)...", "incorrect nonsymmetric Eigenvalue decomposition calculation"); } print("\nTestMatrix completed.\n"); print("Total errors reported: " + Integer.toString(errorCount) + "\n"); print("Total warnings reported: " + Integer.toString(warningCount) + "\n"); } | 18,510 |
0 | public ABIFile(URL url) throws FileFormatException, IOException { URLConnection connection = url.openConnection(); int contentLength = connection.getContentLength(); if (contentLength <= 0) throw new RuntimeException(url + " contained no content"); byte[] content = new byte[contentLength]; DataInputStream dis = new DataInputStream(connection.getInputStream()); dis.readFully(content); dis.close(); dis = new DataInputStream(new ByteArrayInputStream(content)); if (!isABI(dis)) { throw new FileFormatException(url + " is not an ABI trace file"); } char[] fwo = null; dis.reset(); dis.skipBytes(18); int len = dis.readInt(); dis.skipBytes(4); int off = dis.readInt(); ABIRecord[] data = new ABIRecord[12]; ABIRecord[] pbas = new ABIRecord[2]; ABIRecord[] ploc = new ABIRecord[2]; dis.reset(); dis.skipBytes(off); for (; len > 0; len--) { ABIRecord rec = new ABIRecord(dis); if (rec.tag.equals("DATA")) { try { data[rec.n - 1] = rec; } catch (ArrayIndexOutOfBoundsException e) { System.err.println("ABI record contains erroneous n field"); } } else if (rec.tag.equals("FWO_")) { fwo = ((String) rec.data).toCharArray(); } else if (rec.tag.equals("PBAS")) { pbas[rec.n - 1] = rec; } else if (rec.tag.equals("PLOC")) { ploc[rec.n - 1] = rec; } } traceLength = data[8].len; sequenceLength = pbas[1].len; A = new short[traceLength]; C = new short[traceLength]; G = new short[traceLength]; T = new short[traceLength]; max = Short.MIN_VALUE; for (int i = 0; i < 4; i++) { dis.reset(); dis.skipBytes(data[8 + i].off); short[] current = traceArray(fwo[i]); for (int j = 0; j < traceLength; j++) { current[j] = dis.readShort(); if (current[j] > max) max = current[j]; } } byte[] buf = new byte[sequenceLength]; dis.reset(); dis.skipBytes(pbas[1].off); dis.readFully(buf); sequence = new String(buf); centers = new short[sequenceLength]; dis.reset(); dis.skipBytes(ploc[1].off); for (int i = 0; i < sequenceLength; i++) centers[i] = dis.readShort(); } | public List<String> getFtpFileList(String serverIp, int port, String user, String password, String synchrnPath) throws Exception { List<String> list = new ArrayList<String>(); FTPClient ftpClient = new FTPClient(); ftpClient.setControlEncoding("euc-kr"); if (!EgovWebUtil.isIPAddress(serverIp)) { throw new RuntimeException("IP is needed. (" + serverIp + ")"); } InetAddress host = InetAddress.getByName(serverIp); ftpClient.connect(host, port); ftpClient.login(user, password); ftpClient.changeWorkingDirectory(synchrnPath); FTPFile[] fTPFile = ftpClient.listFiles(synchrnPath); for (int i = 0; i < fTPFile.length; i++) { list.add(fTPFile[i].getName()); } return list; } | 18,511 |
1 | public static boolean copyMerge(FileSystem srcFS, Path srcDir, FileSystem dstFS, Path dstFile, boolean deleteSource, Configuration conf, String addString) throws IOException { dstFile = checkDest(srcDir.getName(), dstFS, dstFile, false); if (!srcFS.getFileStatus(srcDir).isDir()) return false; OutputStream out = dstFS.create(dstFile); try { FileStatus contents[] = srcFS.listStatus(srcDir); for (int i = 0; i < contents.length; i++) { if (!contents[i].isDir()) { InputStream in = srcFS.open(contents[i].getPath()); try { IOUtils.copyBytes(in, out, conf, false); if (addString != null) out.write(addString.getBytes("UTF-8")); } finally { in.close(); } } } } finally { out.close(); } if (deleteSource) { return srcFS.delete(srcDir, true); } else { return true; } } | public static void getResponseAsStream(String _url, Object _stringOrStream, OutputStream _stream, Map<String, String> _headers, Map<String, String> _params, String _contentType, int _timeout) throws IOException { if (_url == null || _url.length() <= 0) throw new IllegalArgumentException("Url can not be null."); String temp = _url.toLowerCase(); if (!temp.startsWith("http://") && !temp.startsWith("https://")) _url = "http://" + _url; _url = encodeURL(_url); HttpMethod method = null; if (_stringOrStream == null && (_params == null || _params.size() <= 0)) method = new GetMethod(_url); else method = new PostMethod(_url); HttpMethodParams methodParams = ((HttpMethodBase) method).getParams(); if (methodParams == null) { methodParams = new HttpMethodParams(); ((HttpMethodBase) method).setParams(methodParams); } if (_timeout < 0) methodParams.setSoTimeout(0); else methodParams.setSoTimeout(_timeout); if (_contentType != null && _contentType.length() > 0) { if (_headers == null) _headers = new HashMap<String, String>(); _headers.put("Content-Type", _contentType); } if (_headers == null || !_headers.containsKey("User-Agent")) { if (_headers == null) _headers = new HashMap<String, String>(); _headers.put("User-Agent", DEFAULT_USERAGENT); } if (_headers != null) { Iterator<Map.Entry<String, String>> iter = _headers.entrySet().iterator(); while (iter.hasNext()) { Map.Entry<String, String> entry = iter.next(); method.setRequestHeader((String) entry.getKey(), (String) entry.getValue()); } } if (method instanceof PostMethod && (_params != null && _params.size() > 0)) { Iterator<Map.Entry<String, String>> iter = _params.entrySet().iterator(); while (iter.hasNext()) { Map.Entry<String, String> entry = iter.next(); ((PostMethod) method).addParameter((String) entry.getKey(), (String) entry.getValue()); } } if (method instanceof EntityEnclosingMethod && _stringOrStream != null) { if (_stringOrStream instanceof InputStream) { RequestEntity entity = new InputStreamRequestEntity((InputStream) _stringOrStream); ((EntityEnclosingMethod) method).setRequestEntity(entity); } else { RequestEntity entity = new StringRequestEntity(_stringOrStream.toString(), _contentType, null); ((EntityEnclosingMethod) method).setRequestEntity(entity); } } HttpClient httpClient = new HttpClient(new org.apache.commons.httpclient.SimpleHttpConnectionManager()); httpClient.getParams().setBooleanParameter(HttpClientParams.ALLOW_CIRCULAR_REDIRECTS, true); InputStream instream = null; try { int status = httpClient.executeMethod(method); if (status != HttpStatus.SC_OK) { LOG.warn("Http Satus:" + status + ",Url:" + _url); if (status >= 500 && status < 600) throw new IOException("Remote service<" + _url + "> respose a error, status:" + status); } instream = method.getResponseBodyAsStream(); IOUtils.copy(instream, _stream); } catch (IOException err) { LOG.error("Failed to access " + _url, err); throw err; } finally { IOUtils.closeQuietly(instream); if (method != null) method.releaseConnection(); } } | 18,512 |
0 | public final void provisionGSLAM() { try { UUID[] slaUUID = new UUID[] { new UUID("AG-1") }; SLA[] slas = sslamContext.getSLARegistry().getIQuery().getSLA(slaUUID); for (SLA s : slas) { Party[] parties = s.getParties(); System.out.println("SLA Info :::" + s.getUuid().toString()); for (Party p : parties) { System.out.println("Printing gslam_epr value for Party" + p.getId() + "--" + p.getAgreementRole()); System.out.println(parties[0].getPropertyValue(new STND("gslam_epr"))); } } sslamContext.getSLARegistry().getIRegister().register(slas[0], slaUUID, SLAState.OBSERVED); String xmlFile2Send = System.getenv("SLASOI_HOME") + System.getProperty("file.separator") + "Integration" + System.getProperty("file.separator") + "soap" + System.getProperty("file.separator") + "provision.xml"; String soapAction = ""; URL url; url = new URL(syntaxConverterNegotiationWSURL); URLConnection connection = url.openConnection(); HttpURLConnection httpConn = (HttpURLConnection) connection; FileInputStream fin = new FileInputStream(xmlFile2Send); ByteArrayOutputStream bout = new ByteArrayOutputStream(); SOAPClient4XG.copy(fin, bout); fin.close(); byte[] b = bout.toByteArray(); httpConn.setRequestProperty("Content-Length", String.valueOf(b.length)); httpConn.setRequestProperty("Content-Type", "application/soap+xml; charset=UTF-8"); httpConn.setRequestProperty("SOAPAction", soapAction); httpConn.setRequestMethod("POST"); httpConn.setDoOutput(true); httpConn.setDoInput(true); OutputStream out = httpConn.getOutputStream(); out.write(b); out.close(); InputStreamReader isr = new InputStreamReader(httpConn.getInputStream()); BufferedReader in = new BufferedReader(isr); String inputLine; StringBuffer response = new StringBuffer(); while ((inputLine = in.readLine()) != null) { response.append(inputLine); } in.close(); javax.xml.parsers.DocumentBuilderFactory factory = javax.xml.parsers.DocumentBuilderFactory.newInstance(); javax.xml.parsers.DocumentBuilder db; db = factory.newDocumentBuilder(); org.xml.sax.InputSource inStream = new org.xml.sax.InputSource(); inStream.setCharacterStream(new java.io.StringReader(response.toString())); System.out.println("\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n" + "####################################################" + "#################################################\n" + "####################################################" + "#################################################\n" + "Component Name: GSLAM\n" + "Interface Name: negotiate/coordinage\n" + "Operation Name: Provision\n" + "Input:Type " + "void" + "\n" + "####################################################" + "#################################################\n" + "####################################################" + "#################################################\n" + "######################################## RESPONSE" + "############################################\n\n"); System.out.println(response.toString()); } catch (MalformedURLException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } catch (ParserConfigurationException e) { e.printStackTrace(); } catch (RegistrationFailureException e) { e.printStackTrace(); } catch (SLAManagerContextException e) { e.printStackTrace(); } catch (InvalidUUIDException e) { e.printStackTrace(); } } | private void loadProperties() { if (properties == null) { properties = new Properties(); try { URL url = getClass().getResource(propsFile); if (url != null) properties.load(url.openStream()); } catch (IOException ioe) { ioe.printStackTrace(); } } } | 18,513 |
1 | public void write(File file) throws Exception { if (isInMemory()) { FileOutputStream fout = null; try { fout = new FileOutputStream(file); fout.write(get()); } finally { if (fout != null) { fout.close(); } } } else { File outputFile = getStoreLocation(); if (outputFile != null) { size = outputFile.length(); if (!outputFile.renameTo(file)) { BufferedInputStream in = null; BufferedOutputStream out = null; try { in = new BufferedInputStream(new FileInputStream(outputFile)); out = new BufferedOutputStream(new FileOutputStream(file)); IOUtils.copy(in, out); } finally { if (in != null) { try { in.close(); } catch (IOException e) { } } if (out != null) { try { out.close(); } catch (IOException e) { } } } } } else { throw new FileUploadException("Cannot write uploaded file to disk!"); } } } | @Override public void run() { try { IOUtils.copy(getSource(), processStdIn); System.err.println("Copy done."); close(); } catch (IOException e) { e.printStackTrace(); IOUtils.closeQuietly(ExternalDecoder.this); } } | 18,514 |
1 | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { closeQuietly(in); closeQuietly(out); } return success; } | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | 18,515 |
1 | @Override public void executeInterruptible() { encodingTerminated = false; File destinationFile = null; try { Runtime runtime = Runtime.getRuntime(); IconAndFileListElement element; while ((element = getNextFileElement()) != null) { File origFile = element.getFile(); destinationFile = new File(encodeFileCard.getDestinationFolder().getValue(), origFile.getName()); if (!destinationFile.getParentFile().exists()) { destinationFile.getParentFile().mkdirs(); } actualFileLabel.setText(origFile.getName()); actualFileModel.setMaximum((int) origFile.length()); actualFileModel.setValue(0); int bitrate; synchronized (bitratePattern) { Matcher bitrateMatcher = bitratePattern.matcher(encodeFileCard.getBitrate().getValue()); bitrateMatcher.find(); bitrate = Integer.parseInt(bitrateMatcher.group(1)); } List<String> command = new LinkedList<String>(); command.add(encoderFile.getCanonicalPath()); command.add("--mp3input"); command.add("-m"); command.add("j"); String sampleFreq = Settings.getSetting("encode.sample.freq"); if (Util.isNotEmpty(sampleFreq)) { command.add("--resample"); command.add(sampleFreq); } QualityElement quality = (QualityElement) ((JComboBox) encodeFileCard.getQuality().getValueComponent()).getSelectedItem(); command.add("-q"); command.add(Integer.toString(quality.getValue())); command.add("-b"); command.add(Integer.toString(bitrate)); command.add("--cbr"); command.add("-"); command.add(destinationFile.getCanonicalPath()); if (LOG.isDebugEnabled()) { StringBuilder commandLine = new StringBuilder(); boolean first = true; for (String part : command) { if (!first) commandLine.append(" "); commandLine.append(part); first = false; } LOG.debug("Command line: " + commandLine.toString()); } encodingProcess = runtime.exec(command.toArray(new String[0])); lastPosition = 0l; InputStream fileStream = null; try { fileStream = new PositionNotifierInputStream(new FileInputStream(origFile), origFile.length(), 2048, this); IOUtils.copy(fileStream, encodingProcess.getOutputStream()); encodingProcess.getOutputStream().close(); } finally { IOUtils.closeQuietly(fileStream); if (LOG.isDebugEnabled()) { InputStream processOut = null; try { processOut = encodingProcess.getInputStream(); StringWriter sw = new StringWriter(); IOUtils.copy(processOut, sw); LOG.debug("Process output stream:\n" + sw); IOUtils.closeQuietly(processOut); processOut = encodingProcess.getErrorStream(); sw = new StringWriter(); IOUtils.copy(processOut, sw); LOG.debug("Process error stream:\n" + sw); } finally { IOUtils.closeQuietly(processOut); } } } int result = encodingProcess.waitFor(); encodingProcess = null; if (result != 0) { LOG.warn("Encoder process returned error code " + result); } if (Boolean.parseBoolean(encodeFileCard.getCopyTag().getValue())) { MP3File mp3Input = new MP3File(origFile); MP3File mp3Output = new MP3File(destinationFile); boolean write = false; if (mp3Input.hasID3v2tag()) { ID3v2Tag id3v2Tag = new ID3v2Tag(); for (ID3v2Frame frame : mp3Input.getID3v2tag().getAllframes()) { id3v2Tag.addFrame(frame); } mp3Output.setID3v2tag(id3v2Tag); write = true; } if (mp3Input.hasID3v11tag()) { mp3Output.setID3v11tag(mp3Input.getID3v11tag()); write = true; } if (write) mp3Output.write(); } } actualFileLabel.setText(Messages.getString("operations.file.encode.execute.actualfile.terminated")); actualFileModel.setValue(actualFileModel.getMaximum()); } catch (Exception e) { LOG.error("Cannot encode files", e); if (!(e instanceof IOException && encodingTerminated)) MainWindowInterface.showError(e); if (destinationFile != null) destinationFile.delete(); } } | private void copy(File srouceFile, File destinationFile) throws IOException { FileChannel sourceChannel = new FileInputStream(srouceFile).getChannel(); FileChannel destinationChannel = new FileOutputStream(destinationFile).getChannel(); destinationChannel.transferFrom(sourceChannel, 0, sourceChannel.size()); sourceChannel.close(); destinationChannel.close(); } | 18,516 |
1 | public String loadFileContent(final String _resourceURI) { final Lock readLock = this.fileLock.readLock(); final Lock writeLock = this.fileLock.writeLock(); boolean hasReadLock = false; boolean hasWriteLock = false; try { readLock.lock(); hasReadLock = true; if (!this.cachedResources.containsKey(_resourceURI)) { readLock.unlock(); hasReadLock = false; writeLock.lock(); hasWriteLock = true; if (!this.cachedResources.containsKey(_resourceURI)) { final InputStream resourceAsStream = this.getClass().getResourceAsStream(_resourceURI); final StringWriter writer = new StringWriter(); try { IOUtils.copy(resourceAsStream, writer); } catch (final IOException ex) { throw new IllegalStateException("Resource not read-able", ex); } final String loadedResource = writer.toString(); this.cachedResources.put(_resourceURI, loadedResource); } writeLock.unlock(); hasWriteLock = false; readLock.lock(); hasReadLock = true; } return this.cachedResources.get(_resourceURI); } finally { if (hasReadLock) { readLock.unlock(); } if (hasWriteLock) { writeLock.unlock(); } } } | @Override public void doFilter(HttpServletRequest request, HttpServletResponse response, FilterChain chain) throws IOException { String context = request.getContextPath(); String resource = request.getRequestURI().replace(context, ""); resource = resource.replaceAll("^/\\w*/", ""); if ((StringUtils.isEmpty(resource)) || (resource.endsWith("/"))) { response.setStatus(HttpServletResponse.SC_BAD_REQUEST); return; } URL url = ClassLoaderUtils.getResource(resource); if (url == null) { response.setStatus(HttpServletResponse.SC_NOT_FOUND); return; } if ((this.deny != null) && (this.deny.length > 0)) { for (String s : this.deny) { s = s.trim(); if (s.indexOf('*') != -1) { s = s.replaceAll("\\*", ".*"); } if (Pattern.matches(s, resource)) { response.setStatus(HttpServletResponse.SC_FORBIDDEN); return; } } } InputStream input = url.openStream(); OutputStream output = response.getOutputStream(); URLConnection connection = url.openConnection(); String contentEncoding = connection.getContentEncoding(); int contentLength = connection.getContentLength(); String contentType = connection.getContentType(); if (contentEncoding != null) { response.setCharacterEncoding(contentEncoding); } response.setContentLength(contentLength); response.setContentType(contentType); IOUtils.copy(input, output, true); } | 18,517 |
0 | public static void redirect(String strRequest, PrintWriter sortie) throws Exception { String level = "info."; if (ConnectorServlet.debug) level = "debug."; Log log = LogFactory.getLog(level + "fr.brgm.exows.gml2gsml.GFI"); URL url2Request = new URL(strRequest); URLConnection conn = url2Request.openConnection(); DataInputStream buffin = new DataInputStream(new BufferedInputStream(conn.getInputStream())); String strLine = null; while ((strLine = buffin.readLine()) != null) { sortie.println(strLine); } buffin.close(); } | private void copyFile(File file, File dir) throws IOException { BufferedReader in = new BufferedReader(new FileReader(file)); BufferedWriter out = new BufferedWriter(new FileWriter(new File(dir.getAbsolutePath() + File.separator + file.getName()))); char[] buffer = new char[512]; int read = -1; while ((read = in.read(buffer)) > 0) { out.write(buffer, 0, read); } in.close(); out.close(); } | 18,518 |
0 | public static void main(String args[]) { if (args.length < 1) { System.err.println("usage: java copyURL URL [LocalFile]"); System.exit(1); } try { URL url = new URL(args[0]); System.out.println("Opening connection to " + args[0] + "..."); URLConnection urlC = url.openConnection(); InputStream is = url.openStream(); System.out.print("Copying resource (type: " + urlC.getContentType()); Date date = new Date(urlC.getLastModified()); System.out.flush(); FileOutputStream fos = null; if (args.length < 2) { String localFile = null; StringTokenizer st = new StringTokenizer(url.getFile(), "/"); while (st.hasMoreTokens()) localFile = st.nextToken(); fos = new FileOutputStream(localFile); } else fos = new FileOutputStream(args[1]); int oneChar, count = 0; while ((oneChar = is.read()) != -1) { fos.write(oneChar); count++; } is.close(); fos.close(); System.out.println(count + " byte(s) copied"); } catch (MalformedURLException e) { System.err.println(e.toString()); } catch (IOException e) { System.err.println(e.toString()); } } | public StringBuilder get(String q) { StringBuilder builder = new StringBuilder(); try { URL url = new URL(q); URLConnection urlc = url.openConnection(); BufferedInputStream buffer = new BufferedInputStream(urlc.getInputStream()); int byteRead; while ((byteRead = buffer.read()) != -1) builder.append((char) byteRead); buffer.close(); } catch (MalformedURLException ex) { JOptionPane.showMessageDialog(null, "Error " + ex.toString()); } catch (IOException ex) { JOptionPane.showMessageDialog(null, "Error " + ex.toString()); } return builder; } | 18,519 |
0 | public static void copyFiles(String strPath, String trgPath) { File src = new File(strPath); File trg = new File(trgPath); if (src.isDirectory()) { if (trg.exists() != true) trg.mkdirs(); String list[] = src.list(); for (int i = 0; i < list.length; i++) { String strPath_1 = src.getAbsolutePath() + SEPARATOR + list[i]; String trgPath_1 = trg.getAbsolutePath() + SEPARATOR + list[i]; copyFiles(strPath_1, trgPath_1); } } else { try { FileChannel srcChannel = new FileInputStream(strPath).getChannel(); FileChannel dstChannel = new FileOutputStream(trgPath).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } catch (FileNotFoundException e) { System.out.println("[Error] File not found: " + e.getMessage()); } catch (IOException e) { System.out.println("[Error] " + e.getMessage()); } } } | protected InputStream callApiMethod(String apiUrl, String xmlContent, String contentType, String method, int expected) { try { URL url = new URL(apiUrl); HttpURLConnection request = (HttpURLConnection) url.openConnection(); if (ApplicationConstants.CONNECT_TIMEOUT > -1) { request.setConnectTimeout(ApplicationConstants.CONNECT_TIMEOUT); } if (ApplicationConstants.READ_TIMEOUT > -1) { request.setReadTimeout(ApplicationConstants.READ_TIMEOUT); } for (String headerName : requestHeaders.keySet()) { request.setRequestProperty(headerName, requestHeaders.get(headerName)); } request.setRequestMethod(method); request.setDoOutput(true); if (contentType != null) { request.setRequestProperty("Content-Type", contentType); } if (xmlContent != null) { PrintStream out = new PrintStream(new BufferedOutputStream(request.getOutputStream())); out.print(xmlContent); out.flush(); out.close(); } request.connect(); if (request.getResponseCode() != expected) { throw new BingMapsException(convertStreamToString(request.getErrorStream())); } else { return getWrappedInputStream(request.getInputStream(), GZIP_ENCODING.equalsIgnoreCase(request.getContentEncoding())); } } catch (IOException e) { throw new BingMapsException(e); } } | 18,520 |
0 | @org.junit.Test public void simpleRead() throws Exception { final InputStream istream = StatsInputStreamTest.class.getResourceAsStream("/testFile.txt"); final StatsInputStream ris = new StatsInputStream(istream); assertEquals("read size", 0, ris.getSize()); IOUtils.copy(ris, new NullOutputStream()); assertEquals("in the end", 30, ris.getSize()); } | private void parseXmlFile() throws IOException { DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance(); try { DocumentBuilder db = dbf.newDocumentBuilder(); if (file != null) { dom = db.parse(file); } else { dom = db.parse(url.openStream()); } } catch (ParserConfigurationException pce) { pce.printStackTrace(); } catch (SAXException se) { se.printStackTrace(); } } | 18,521 |
1 | public void readData(RowSetInternal caller) throws SQLException { Connection con = null; try { CachedRowSet crs = (CachedRowSet) caller; if (crs.getPageSize() == 0 && crs.size() > 0) { crs.close(); } writerCalls = 0; userCon = false; con = this.connect(caller); if (con == null || crs.getCommand() == null) throw new SQLException(resBundle.handleGetObject("crsreader.connecterr").toString()); try { con.setTransactionIsolation(crs.getTransactionIsolation()); } catch (Exception ex) { ; } PreparedStatement pstmt = con.prepareStatement(crs.getCommand()); decodeParams(caller.getParams(), pstmt); try { pstmt.setMaxRows(crs.getMaxRows()); pstmt.setMaxFieldSize(crs.getMaxFieldSize()); pstmt.setEscapeProcessing(crs.getEscapeProcessing()); pstmt.setQueryTimeout(crs.getQueryTimeout()); } catch (Exception ex) { throw new SQLException(ex.getMessage()); } if (crs.getCommand().toLowerCase().indexOf("select") != -1) { ResultSet rs = pstmt.executeQuery(); if (crs.getPageSize() == 0) { crs.populate(rs); } else { pstmt = con.prepareStatement(crs.getCommand(), ResultSet.TYPE_SCROLL_INSENSITIVE, ResultSet.CONCUR_UPDATABLE); decodeParams(caller.getParams(), pstmt); try { pstmt.setMaxRows(crs.getMaxRows()); pstmt.setMaxFieldSize(crs.getMaxFieldSize()); pstmt.setEscapeProcessing(crs.getEscapeProcessing()); pstmt.setQueryTimeout(crs.getQueryTimeout()); } catch (Exception ex) { throw new SQLException(ex.getMessage()); } rs = pstmt.executeQuery(); crs.populate(rs, startPosition); } rs.close(); } else { pstmt.executeUpdate(); } pstmt.close(); try { con.commit(); } catch (SQLException ex) { ; } if (getCloseConnection() == true) con.close(); } catch (SQLException ex) { throw ex; } finally { try { if (con != null && getCloseConnection() == true) { try { if (!con.getAutoCommit()) { con.rollback(); } } catch (Exception dummy) { } con.close(); con = null; } } catch (SQLException e) { } } } | @Override public void create(DisciplinaDTO disciplina) { try { this.criaConexao(false); } catch (ClassNotFoundException ex) { java.util.logging.Logger.getLogger(PostgresqlDisciplinaDAO.class.getName()).log(Level.SEVERE, null, ex); } catch (SQLException ex) { java.util.logging.Logger.getLogger(PostgresqlDisciplinaDAO.class.getName()).log(Level.SEVERE, null, ex); } String sql = "insert into Disciplina select nextval('sq_Disciplina') as id, ? as nome"; PreparedStatement stmt = null; try { stmt = this.getConnection().prepareStatement(sql); stmt.setString(1, disciplina.getNome()); int retorno = stmt.executeUpdate(); if (retorno == 0) { this.getConnection().rollback(); throw new SQLException("Ocorreu um erro inesperado no momento de inserir dados de Disciplina no banco!"); } this.getConnection().commit(); } catch (SQLException e) { try { this.getConnection().rollback(); } catch (SQLException ex) { java.util.logging.Logger.getLogger(PostgresqlDisciplinaDAO.class.getName()).log(Level.SEVERE, null, ex); } try { throw e; } catch (SQLException ex) { java.util.logging.Logger.getLogger(PostgresqlDisciplinaDAO.class.getName()).log(Level.SEVERE, null, ex); } } finally { try { stmt.close(); this.fechaConexao(); } catch (SQLException e) { try { throw e; } catch (SQLException ex) { java.util.logging.Logger.getLogger(PostgresqlDisciplinaDAO.class.getName()).log(Level.SEVERE, null, ex); } } } } | 18,522 |
0 | public void copyDependancyFiles() { for (String[] depStrings : getDependancyFiles()) { String source = depStrings[0]; String target = depStrings[1]; try { File sourceFile = PluginManager.getFile(source); IOUtils.copyEverything(sourceFile, new File(WEB_ROOT + target)); } catch (URISyntaxException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } } } | public byte[] getEncoded(X509Certificate checkCert, X509Certificate rootCert, String url) { try { if (checkCert == null || rootCert == null) return null; if (url == null) { url = PdfPKCS7.getOCSPURL(checkCert); } if (url == null) return null; OCSPReq request = generateOCSPRequest(rootCert, checkCert.getSerialNumber()); byte[] array = request.getEncoded(); URL urlt = new URL(url); HttpURLConnection con = (HttpURLConnection) urlt.openConnection(); con.setRequestProperty("Content-Type", "application/ocsp-request"); con.setRequestProperty("Accept", "application/ocsp-response"); con.setDoOutput(true); OutputStream out = con.getOutputStream(); DataOutputStream dataOut = new DataOutputStream(new BufferedOutputStream(out)); dataOut.write(array); dataOut.flush(); dataOut.close(); if (con.getResponseCode() / 100 != 2) { throw new IOException(MessageLocalization.getComposedMessage("invalid.http.response.1", con.getResponseCode())); } InputStream in = (InputStream) con.getContent(); OCSPResp ocspResponse = new OCSPResp(RandomAccessFileOrArray.InputStreamToArray(in)); if (ocspResponse.getStatus() != 0) throw new IOException(MessageLocalization.getComposedMessage("invalid.status.1", ocspResponse.getStatus())); BasicOCSPResp basicResponse = (BasicOCSPResp) ocspResponse.getResponseObject(); if (basicResponse != null) { SingleResp[] responses = basicResponse.getResponses(); if (responses.length == 1) { SingleResp resp = responses[0]; Object status = resp.getCertStatus(); if (status == CertificateStatus.GOOD) { return basicResponse.getEncoded(); } else if (status instanceof org.bouncycastle.ocsp.RevokedStatus) { throw new IOException(MessageLocalization.getComposedMessage("ocsp.status.is.revoked")); } else { throw new IOException(MessageLocalization.getComposedMessage("ocsp.status.is.unknown")); } } } } catch (Exception ex) { if (LOGGER.isLogging(Level.ERROR)) LOGGER.error("OcspClientBouncyCastle", ex); } return null; } | 18,523 |
0 | protected void copyFile(final String sourceFileName, final File path) throws IOException { final File source = new File(sourceFileName); final File destination = new File(path, source.getName()); FileChannel srcChannel = null; FileChannel dstChannel = null; FileInputStream fileInputStream = null; FileOutputStream fileOutputStream = null; try { fileInputStream = new FileInputStream(source); srcChannel = fileInputStream.getChannel(); fileOutputStream = new FileOutputStream(destination); dstChannel = fileOutputStream.getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); } finally { try { if (dstChannel != null) { dstChannel.close(); } } catch (Exception exception) { } try { if (srcChannel != null) { srcChannel.close(); } } catch (Exception exception) { } try { fileInputStream.close(); } catch (Exception exception) { } try { fileOutputStream.close(); } catch (Exception exception) { } } } | char[] DigestCalcResponse(char[] HA1, String serverNonce, String nonceCount, String clientNonce, String qop, String method, String digestUri, boolean clientResponseFlag) throws SaslException { byte[] HA2; byte[] respHash; char[] HA2Hex; try { MessageDigest md = MessageDigest.getInstance("MD5"); if (clientResponseFlag) md.update(method.getBytes("UTF-8")); md.update(":".getBytes("UTF-8")); md.update(digestUri.getBytes("UTF-8")); if ("auth-int".equals(qop)) { md.update(":".getBytes("UTF-8")); md.update("00000000000000000000000000000000".getBytes("UTF-8")); } HA2 = md.digest(); HA2Hex = convertToHex(HA2); md.update(new String(HA1).getBytes("UTF-8")); md.update(":".getBytes("UTF-8")); md.update(serverNonce.getBytes("UTF-8")); md.update(":".getBytes("UTF-8")); if (qop.length() > 0) { md.update(nonceCount.getBytes("UTF-8")); md.update(":".getBytes("UTF-8")); md.update(clientNonce.getBytes("UTF-8")); md.update(":".getBytes("UTF-8")); md.update(qop.getBytes("UTF-8")); md.update(":".getBytes("UTF-8")); } md.update(new String(HA2Hex).getBytes("UTF-8")); respHash = md.digest(); } catch (NoSuchAlgorithmException e) { throw new SaslException("No provider found for MD5 hash", e); } catch (UnsupportedEncodingException e) { throw new SaslException("UTF-8 encoding not supported by platform.", e); } return convertToHex(respHash); } | 18,524 |
1 | public void delete(String user) throws FidoDatabaseException { try { Connection conn = null; Statement stmt = null; try { conn = fido.util.FidoDataSource.getConnection(); conn.setAutoCommit(false); stmt = conn.createStatement(); stmt.executeUpdate("delete from Principals where PrincipalId = '" + user + "'"); stmt.executeUpdate("delete from Roles where PrincipalId = '" + user + "'"); conn.commit(); } catch (SQLException e) { if (conn != null) conn.rollback(); throw e; } finally { if (stmt != null) stmt.close(); if (conn != null) conn.close(); } } catch (SQLException e) { throw new FidoDatabaseException(e); } } | @Override public synchronized void deletePersistenceQueryStatistics(Integer elementId, String contextName, String project, String name, Date dateFrom, Date dateTo) throws DatabaseException { final Connection connection = this.getConnection(); try { connection.setAutoCommit(false); String queryString = "DELETE " + this.getPersistenceQueryStatisticsSchemaAndTableName() + " FROM " + this.getPersistenceQueryStatisticsSchemaAndTableName() + " INNER JOIN " + this.getPersistenceQueryElementsSchemaAndTableName() + " ON " + this.getPersistenceQueryElementsSchemaAndTableName() + ".element_id = " + this.getPersistenceQueryStatisticsSchemaAndTableName() + ".element_id WHERE "; if (elementId != null) { queryString = queryString + " elementId = ? AND "; } if (contextName != null) { queryString = queryString + " context_name LIKE ? AND "; } if ((project != null)) { queryString = queryString + " project LIKE ? AND "; } if ((name != null)) { queryString = queryString + " name LIKE ? AND "; } if (dateFrom != null) { queryString = queryString + " start_timestamp >= ? AND "; } if (dateTo != null) { queryString = queryString + " start_timestamp <= ? AND "; } queryString = DefaultDatabaseHandler.removeOrphanWhereAndAndFromSelect(queryString); final PreparedStatement preparedStatement = DebugPreparedStatement.prepareStatement(connection, queryString); int indexCounter = 1; if (elementId != null) { preparedStatement.setLong(indexCounter, elementId.longValue()); indexCounter = indexCounter + 1; } if (contextName != null) { preparedStatement.setString(indexCounter, contextName); indexCounter = indexCounter + 1; } if ((project != null)) { preparedStatement.setString(indexCounter, project); indexCounter = indexCounter + 1; } if ((name != null)) { preparedStatement.setString(indexCounter, name); indexCounter = indexCounter + 1; } if (dateFrom != null) { preparedStatement.setTimestamp(indexCounter, new Timestamp(dateFrom.getTime())); indexCounter = indexCounter + 1; } if (dateTo != null) { preparedStatement.setTimestamp(indexCounter, new Timestamp(dateTo.getTime())); indexCounter = indexCounter + 1; } preparedStatement.executeUpdate(); preparedStatement.close(); connection.commit(); } catch (final SQLException e) { try { connection.rollback(); } catch (final SQLException ex) { JeeObserverServerContext.logger.log(Level.SEVERE, "Transaction rollback error.", ex); } JeeObserverServerContext.logger.log(Level.SEVERE, e.getMessage()); throw new DatabaseException("Error deleting persistence query statistics.", e); } finally { this.releaseConnection(connection); } } | 18,525 |
0 | public void importarEmpresasAbertas(File pArquivoTXT, Andamento pAndamento) throws FileNotFoundException, SQLException { int numeroDoRegistro = -1; Scanner in = null; Statement stmtLimpezaInicialDestino = conDestino.createStatement(); String sql = "TRUNCATE TABLE TMP_TB_CIA_ABERTA"; stmtLimpezaInicialDestino.executeUpdate(sql); sql = "INSERT INTO TMP_TB_CIA_ABERTA(CODIGO_CVM, DENOMINACAO_SOCIAL, DENOMINACAO_COMERCIAL, LOGRADOURO, COMPLEMENTO, BAIRRO, CEP, MUNICIPIO, UF, DDD, TELEFONE, FAX, DENOMINACAO_ANTERIOR, SETOR_ATIVIDADE, CNPJ, DRI, AUDITOR, QUANT_DE_ACOES_ORDINARIAS, QUANT_DE_ACOES_PREF, SITUACAO, DATA_DA_SITUACAO, TIPO_PAPEL1, TIPO_PAPEL2, TIPO_PAPEL3, TIPO_PAPEL4, TIPO_PAPEL5, TIPO_PAPEL6, CONTROLE_ACIONARIO, DATA_DE_REGISTRO, DATA_DO_CANCELAMENTO, MERCADO, BOLSA1, BOLSA2, BOLSA3, BOLSA4, BOLSA5, BOLSA6, BOLSA7, BOLSA8, BOLSA9, MOTIVO_DO_CANCELAMENTO, PATRIMONIO_LIQUIDO, DATA_DO_PATRIMONIO, E_MAIL, NOME_SETOR_ATIVIDADE, DATA_DA_ACAO, TIPO_NEGOCIO1, TIPO_NEGOCIO2, TIPO_NEGOCIO3, TIPO_NEGOCIO4, TIPO_NEGOCIO5, TIPO_NEGOCIO6, TIPO_MERCADO1, TIPO_MERCADO2, TIPO_MERCADO3, TIPO_MERCADO4, TIPO_MERCADO5, TIPO_MERCADO6) VALUES(:CODIGO_CVM, :DENOMINACAO_SOCIAL, :DENOMINACAO_COMERCIAL, :LOGRADOURO, :COMPLEMENTO, :BAIRRO, :CEP, :MUNICIPIO, :UF, :DDD, :TELEFONE, :FAX, :DENOMINACAO_ANTERIOR, :SETOR_ATIVIDADE, :CNPJ, :DRI, :AUDITOR, :QUANT_DE_ACOES_ORDINARIAS, :QUANT_DE_ACOES_PREF, :SITUACAO, :DATA_DA_SITUACAO, :TIPO_PAPEL1, :TIPO_PAPEL2, :TIPO_PAPEL3, :TIPO_PAPEL4, :TIPO_PAPEL5, :TIPO_PAPEL6, :CONTROLE_ACIONARIO, :DATA_DE_REGISTRO, :DATA_DO_CANCELAMENTO, :MERCADO, :BOLSA1, :BOLSA2, :BOLSA3, :BOLSA4, :BOLSA5, :BOLSA6, :BOLSA7, :BOLSA8, :BOLSA9, :MOTIVO_DO_CANCELAMENTO, :PATRIMONIO_LIQUIDO, :DATA_DO_PATRIMONIO, :E_MAIL, :NOME_SETOR_ATIVIDADE, :DATA_DA_ACAO, :TIPO_NEGOCIO1, :TIPO_NEGOCIO2, :TIPO_NEGOCIO3, :TIPO_NEGOCIO4, :TIPO_NEGOCIO5, :TIPO_NEGOCIO6, :TIPO_MERCADO1, :TIPO_MERCADO2, :TIPO_MERCADO3, :TIPO_MERCADO4, :TIPO_MERCADO5, :TIPO_MERCADO6)"; OraclePreparedStatement stmtDestino = (OraclePreparedStatement) conDestino.prepareStatement(sql); stmtDestino.setExecuteBatch(COMANDOS_POR_LOTE); final int TAMANHO_DO_CABECALHO_DO_ARQUIVO = 707; final int TAMANHO_DO_RODAPE_DO_ARQUIVO = 0; final int TAMANHO_DOS_METADADOS_DO_ARQUIVO = TAMANHO_DO_CABECALHO_DO_ARQUIVO + TAMANHO_DO_RODAPE_DO_ARQUIVO; final int TAMANHO_MEDIO_POR_REGISTRO = 659; long tamanhoDosArquivos = pArquivoTXT.length(); int quantidadeDeRegistrosEstimada = (int) (tamanhoDosArquivos - TAMANHO_DOS_METADADOS_DO_ARQUIVO) / TAMANHO_MEDIO_POR_REGISTRO; try { in = new Scanner(new FileInputStream(pArquivoTXT), Constantes.CONJUNTO_DE_CARACTERES_DO_ARQUIVO_TEXTO_DA_CVM.name()); int quantidadeDeRegistrosImportada = 0; String registro; String[] campos; in.nextLine(); numeroDoRegistro = 0; int vCODIGO_CVM; String vDENOMINACAO_SOCIAL, vDENOMINACAO_COMERCIAL, vLOGRADOURO, vCOMPLEMENTO, vBAIRRO; BigDecimal vCEP; String vMUNICIPIO, vUF; BigDecimal vDDD, vTELEFONE, vFAX; String vDENOMINACAO_ANTERIOR, vSETOR_ATIVIDADE; BigDecimal vCNPJ; String vDRI, vAUDITOR; BigDecimal vQUANT_DE_ACOES_ORDINARIAS, vQUANT_DE_ACOES_PREF; String vSITUACAO; java.sql.Date vDATA_DA_SITUACAO; String vTIPO_PAPEL1, vTIPO_PAPEL2, vTIPO_PAPEL3, vTIPO_PAPEL4, vTIPO_PAPEL5, vTIPO_PAPEL6, vCONTROLE_ACIONARIO; java.sql.Date vDATA_DE_REGISTRO, vDATA_DO_CANCELAMENTO; String vMERCADO, vBOLSA1, vBOLSA2, vBOLSA3, vBOLSA4, vBOLSA5, vBOLSA6, vBOLSA7, vBOLSA8, vBOLSA9, vMOTIVO_DO_CANCELAMENTO; BigDecimal vPATRIMONIO_LIQUIDO; java.sql.Date vDATA_DO_PATRIMONIO; String vE_MAIL, vNOME_SETOR_ATIVIDADE; java.sql.Date vDATA_DA_ACAO; String vTIPO_NEGOCIO1, vTIPO_NEGOCIO2, vTIPO_NEGOCIO3, vTIPO_NEGOCIO4, vTIPO_NEGOCIO5, vTIPO_NEGOCIO6, vTIPO_MERCADO1, vTIPO_MERCADO2, vTIPO_MERCADO3, vTIPO_MERCADO4, vTIPO_MERCADO5, vTIPO_MERCADO6; final int QTDE_CAMPOS = CampoDoArquivoDasEmpresasAbertas.values().length; final String SEPARADOR_DE_CAMPOS_DO_REGISTRO = ";"; while (in.hasNextLine()) { ++numeroDoRegistro; registro = in.nextLine(); stmtDestino.clearParameters(); ArrayList<String> camposTmp = new ArrayList<String>(QTDE_CAMPOS); StringBuilder campoTmp = new StringBuilder(); char[] registroTmp = registro.toCharArray(); char c; boolean houveMesclagemDeCampos = false; boolean campoIniciaComEspacoEmBranco, campoPossuiConteudo, registroComExcessoDeDelimitadores; int quantidadeDeDelimitadoresEncontrados = (registro.length() - registro.replace(SEPARADOR_DE_CAMPOS_DO_REGISTRO, "").length()); registroComExcessoDeDelimitadores = (quantidadeDeDelimitadoresEncontrados > (QTDE_CAMPOS - 1)); for (int idxCaractere = 0; idxCaractere < registroTmp.length; idxCaractere++) { c = registroTmp[idxCaractere]; if (c == SEPARADOR_DE_CAMPOS_DO_REGISTRO.charAt(0)) { campoPossuiConteudo = (campoTmp.length() > 0 && campoTmp.toString().trim().length() > 0); if (campoPossuiConteudo) { String campoAnterior = null; if (camposTmp.size() > 0) { campoAnterior = camposTmp.get(camposTmp.size() - 1); } campoIniciaComEspacoEmBranco = campoTmp.toString().startsWith(" "); if (campoAnterior != null && campoIniciaComEspacoEmBranco && registroComExcessoDeDelimitadores) { camposTmp.set(camposTmp.size() - 1, (campoAnterior + campoTmp.toString()).trim()); houveMesclagemDeCampos = true; } else { camposTmp.add(campoTmp.toString().trim()); } } else { camposTmp.add(null); } campoTmp.setLength(0); } else { campoTmp.append(c); } } if (registro.endsWith(SEPARADOR_DE_CAMPOS_DO_REGISTRO)) { camposTmp.add(null); } if (houveMesclagemDeCampos && camposTmp.size() < QTDE_CAMPOS) { camposTmp.add(CampoDoArquivoDasEmpresasAbertas.COMPLEMENTO.ordinal(), null); } campos = camposTmp.toArray(new String[camposTmp.size()]); int quantidadeDeCamposEncontradosIncluindoOsVazios = campos.length; if (quantidadeDeCamposEncontradosIncluindoOsVazios != QTDE_CAMPOS) { throw new CampoMalDelimitadoEmRegistroDoArquivoImportado(registro); } vCODIGO_CVM = Integer.parseInt(campos[CampoDoArquivoDasEmpresasAbertas.CODIGO_CVM.ordinal()]); vDENOMINACAO_SOCIAL = campos[CampoDoArquivoDasEmpresasAbertas.DENOMINACAO_SOCIAL.ordinal()]; vDENOMINACAO_COMERCIAL = campos[CampoDoArquivoDasEmpresasAbertas.DENOMINACAO_COMERCIAL.ordinal()]; vLOGRADOURO = campos[CampoDoArquivoDasEmpresasAbertas.LOGRADOURO.ordinal()]; vCOMPLEMENTO = campos[CampoDoArquivoDasEmpresasAbertas.COMPLEMENTO.ordinal()]; vBAIRRO = campos[CampoDoArquivoDasEmpresasAbertas.BAIRRO.ordinal()]; String cepTmp = campos[CampoDoArquivoDasEmpresasAbertas.CEP.ordinal()]; if (cepTmp != null && cepTmp.trim().length() > 0) { vCEP = new BigDecimal(cepTmp); } else { vCEP = null; } vMUNICIPIO = campos[CampoDoArquivoDasEmpresasAbertas.MUNICIPIO.ordinal()]; vUF = campos[CampoDoArquivoDasEmpresasAbertas.UF.ordinal()]; String dddTmp = campos[CampoDoArquivoDasEmpresasAbertas.DDD.ordinal()], foneTmp = campos[CampoDoArquivoDasEmpresasAbertas.TELEFONE.ordinal()], dddFone = ""; if (dddTmp != null && dddTmp.trim().length() > 0) { dddFone = dddFone + dddTmp; } if (foneTmp != null && foneTmp.trim().length() > 0) { dddFone = dddFone + foneTmp; } if (dddFone != null && dddFone.trim().length() > 0) { dddFone = new BigDecimal(dddFone).toString(); if (dddFone.length() > 10 && dddFone.endsWith("0")) { dddFone = dddFone.substring(0, 10); } vDDD = new BigDecimal(dddFone.substring(0, 2)); vTELEFONE = new BigDecimal(dddFone.substring(2)); } else { vDDD = null; vTELEFONE = null; } String faxTmp = campos[CampoDoArquivoDasEmpresasAbertas.FAX.ordinal()]; if (faxTmp != null && faxTmp.trim().length() > 0) { vFAX = new BigDecimal(faxTmp); } else { vFAX = null; } vDENOMINACAO_ANTERIOR = campos[CampoDoArquivoDasEmpresasAbertas.DENOMINACAO_ANTERIOR.ordinal()]; vSETOR_ATIVIDADE = campos[CampoDoArquivoDasEmpresasAbertas.SETOR_ATIVIDADE.ordinal()]; String cnpjTmp = campos[CampoDoArquivoDasEmpresasAbertas.CNPJ.ordinal()]; if (cnpjTmp != null && cnpjTmp.trim().length() > 0) { vCNPJ = new BigDecimal(cnpjTmp); } else { vCNPJ = null; } vDRI = campos[CampoDoArquivoDasEmpresasAbertas.DRI.ordinal()]; vAUDITOR = campos[CampoDoArquivoDasEmpresasAbertas.AUDITOR.ordinal()]; String qtdeAcoesON = campos[CampoDoArquivoDasEmpresasAbertas.QUANT_DE_ACOES_ORDINARIAS.ordinal()]; if (qtdeAcoesON != null && qtdeAcoesON.trim().length() > 0) { vQUANT_DE_ACOES_ORDINARIAS = new BigDecimal(qtdeAcoesON); } else { vQUANT_DE_ACOES_ORDINARIAS = null; } String qtdeAcoesPN = campos[CampoDoArquivoDasEmpresasAbertas.QUANT_DE_ACOES_PREF.ordinal()]; if (qtdeAcoesPN != null && qtdeAcoesPN.trim().length() > 0) { vQUANT_DE_ACOES_PREF = new BigDecimal(qtdeAcoesPN); } else { vQUANT_DE_ACOES_PREF = null; } vSITUACAO = campos[CampoDoArquivoDasEmpresasAbertas.SITUACAO.ordinal()]; String dataDaSituacaoTmp = campos[CampoDoArquivoDasEmpresasAbertas.DATA_DA_SITUACAO.ordinal()]; String[] partesDaData = dataDaSituacaoTmp.trim().split("/"); int dia = Integer.parseInt(partesDaData[0]), mes = Integer.parseInt(partesDaData[1]) - 1, ano = Integer.parseInt(partesDaData[2]); Calendar calendario = Calendar.getInstance(); calendario.clear(); calendario.set(ano, mes, dia); vDATA_DA_SITUACAO = new java.sql.Date(calendario.getTimeInMillis()); vTIPO_PAPEL1 = campos[CampoDoArquivoDasEmpresasAbertas.TIPO_PAPEL1.ordinal()]; vTIPO_PAPEL2 = campos[CampoDoArquivoDasEmpresasAbertas.TIPO_PAPEL2.ordinal()]; vTIPO_PAPEL3 = campos[CampoDoArquivoDasEmpresasAbertas.TIPO_PAPEL3.ordinal()]; vTIPO_PAPEL4 = campos[CampoDoArquivoDasEmpresasAbertas.TIPO_PAPEL4.ordinal()]; vTIPO_PAPEL5 = campos[CampoDoArquivoDasEmpresasAbertas.TIPO_PAPEL5.ordinal()]; vTIPO_PAPEL6 = campos[CampoDoArquivoDasEmpresasAbertas.TIPO_PAPEL6.ordinal()]; vCONTROLE_ACIONARIO = campos[CampoDoArquivoDasEmpresasAbertas.CONTROLE_ACIONARIO.ordinal()]; String dataDeRegistroTmp = campos[CampoDoArquivoDasEmpresasAbertas.DATA_DE_REGISTRO.ordinal()]; partesDaData = dataDeRegistroTmp.trim().split("/"); dia = Integer.parseInt(partesDaData[0]); mes = Integer.parseInt(partesDaData[1]) - 1; ano = Integer.parseInt(partesDaData[2]); calendario = Calendar.getInstance(); calendario.clear(); calendario.set(ano, mes, dia); vDATA_DE_REGISTRO = new java.sql.Date(calendario.getTimeInMillis()); String dataDoCancelamentoTmp = campos[CampoDoArquivoDasEmpresasAbertas.DATA_DO_CANCELAMENTO.ordinal()]; if (dataDoCancelamentoTmp != null && dataDoCancelamentoTmp.trim().length() > 0) { partesDaData = dataDoCancelamentoTmp.trim().split("/"); dia = Integer.parseInt(partesDaData[0]); mes = Integer.parseInt(partesDaData[1]) - 1; ano = Integer.parseInt(partesDaData[2]); calendario = Calendar.getInstance(); calendario.clear(); calendario.set(ano, mes, dia); vDATA_DO_CANCELAMENTO = new java.sql.Date(calendario.getTimeInMillis()); } else { vDATA_DO_CANCELAMENTO = null; } vMERCADO = campos[CampoDoArquivoDasEmpresasAbertas.MERCADO.ordinal()]; vBOLSA1 = campos[CampoDoArquivoDasEmpresasAbertas.BOLSA1.ordinal()]; vBOLSA2 = campos[CampoDoArquivoDasEmpresasAbertas.BOLSA2.ordinal()]; vBOLSA3 = campos[CampoDoArquivoDasEmpresasAbertas.BOLSA3.ordinal()]; vBOLSA4 = campos[CampoDoArquivoDasEmpresasAbertas.BOLSA4.ordinal()]; vBOLSA5 = campos[CampoDoArquivoDasEmpresasAbertas.BOLSA5.ordinal()]; vBOLSA6 = campos[CampoDoArquivoDasEmpresasAbertas.BOLSA6.ordinal()]; vBOLSA7 = campos[CampoDoArquivoDasEmpresasAbertas.BOLSA7.ordinal()]; vBOLSA8 = campos[CampoDoArquivoDasEmpresasAbertas.BOLSA8.ordinal()]; vBOLSA9 = campos[CampoDoArquivoDasEmpresasAbertas.BOLSA9.ordinal()]; vMOTIVO_DO_CANCELAMENTO = campos[CampoDoArquivoDasEmpresasAbertas.MOTIVO_DO_CANCELAMENTO.ordinal()]; String patrimonioLiquidoTmp = campos[CampoDoArquivoDasEmpresasAbertas.PATRIMONIO_LIQUIDO.ordinal()]; if (patrimonioLiquidoTmp != null && patrimonioLiquidoTmp.trim().length() > 0) { vPATRIMONIO_LIQUIDO = new BigDecimal(patrimonioLiquidoTmp); } else { vPATRIMONIO_LIQUIDO = null; } String dataDoPatrimonioTmp = campos[CampoDoArquivoDasEmpresasAbertas.DATA_DO_PATRIMONIO.ordinal()]; if (dataDoPatrimonioTmp != null && dataDoPatrimonioTmp.trim().length() > 0) { partesDaData = dataDoPatrimonioTmp.trim().split("/"); dia = Integer.parseInt(partesDaData[0]); mes = Integer.parseInt(partesDaData[1]) - 1; ano = Integer.parseInt(partesDaData[2]); calendario = Calendar.getInstance(); calendario.clear(); calendario.set(ano, mes, dia); vDATA_DO_PATRIMONIO = new java.sql.Date(calendario.getTimeInMillis()); } else { vDATA_DO_PATRIMONIO = null; } vE_MAIL = campos[CampoDoArquivoDasEmpresasAbertas.E_MAIL.ordinal()]; vNOME_SETOR_ATIVIDADE = campos[CampoDoArquivoDasEmpresasAbertas.NOME_SETOR_ATIVIDADE.ordinal()]; String dataDaAcaoTmp = campos[CampoDoArquivoDasEmpresasAbertas.DATA_DA_ACAO.ordinal()]; if (dataDaAcaoTmp != null && dataDaAcaoTmp.trim().length() > 0) { partesDaData = dataDaAcaoTmp.trim().split("/"); dia = Integer.parseInt(partesDaData[0]); mes = Integer.parseInt(partesDaData[1]) - 1; ano = Integer.parseInt(partesDaData[2]); calendario = Calendar.getInstance(); calendario.clear(); calendario.set(ano, mes, dia); vDATA_DA_ACAO = new java.sql.Date(calendario.getTimeInMillis()); } else { vDATA_DA_ACAO = null; } vTIPO_NEGOCIO1 = campos[CampoDoArquivoDasEmpresasAbertas.TIPO_NEGOCIO1.ordinal()]; vTIPO_NEGOCIO2 = campos[CampoDoArquivoDasEmpresasAbertas.TIPO_NEGOCIO2.ordinal()]; vTIPO_NEGOCIO3 = campos[CampoDoArquivoDasEmpresasAbertas.TIPO_NEGOCIO3.ordinal()]; vTIPO_NEGOCIO4 = campos[CampoDoArquivoDasEmpresasAbertas.TIPO_NEGOCIO4.ordinal()]; vTIPO_NEGOCIO5 = campos[CampoDoArquivoDasEmpresasAbertas.TIPO_NEGOCIO5.ordinal()]; vTIPO_NEGOCIO6 = campos[CampoDoArquivoDasEmpresasAbertas.TIPO_NEGOCIO6.ordinal()]; vTIPO_MERCADO1 = campos[CampoDoArquivoDasEmpresasAbertas.TIPO_MERCADO1.ordinal()]; vTIPO_MERCADO2 = campos[CampoDoArquivoDasEmpresasAbertas.TIPO_MERCADO2.ordinal()]; vTIPO_MERCADO3 = campos[CampoDoArquivoDasEmpresasAbertas.TIPO_MERCADO3.ordinal()]; vTIPO_MERCADO4 = campos[CampoDoArquivoDasEmpresasAbertas.TIPO_MERCADO4.ordinal()]; vTIPO_MERCADO5 = campos[CampoDoArquivoDasEmpresasAbertas.TIPO_MERCADO5.ordinal()]; vTIPO_MERCADO6 = campos[CampoDoArquivoDasEmpresasAbertas.TIPO_MERCADO6.ordinal()]; stmtDestino.setIntAtName("CODIGO_CVM", vCODIGO_CVM); stmtDestino.setStringAtName("DENOMINACAO_SOCIAL", vDENOMINACAO_SOCIAL); stmtDestino.setStringAtName("DENOMINACAO_COMERCIAL", vDENOMINACAO_COMERCIAL); stmtDestino.setStringAtName("LOGRADOURO", vLOGRADOURO); stmtDestino.setStringAtName("COMPLEMENTO", vCOMPLEMENTO); stmtDestino.setStringAtName("BAIRRO", vBAIRRO); stmtDestino.setBigDecimalAtName("CEP", vCEP); stmtDestino.setStringAtName("MUNICIPIO", vMUNICIPIO); stmtDestino.setStringAtName("UF", vUF); stmtDestino.setBigDecimalAtName("DDD", vDDD); stmtDestino.setBigDecimalAtName("TELEFONE", vTELEFONE); stmtDestino.setBigDecimalAtName("FAX", vFAX); stmtDestino.setStringAtName("DENOMINACAO_ANTERIOR", vDENOMINACAO_ANTERIOR); stmtDestino.setStringAtName("SETOR_ATIVIDADE", vSETOR_ATIVIDADE); stmtDestino.setBigDecimalAtName("CNPJ", vCNPJ); stmtDestino.setStringAtName("DRI", vDRI); stmtDestino.setStringAtName("AUDITOR", vAUDITOR); stmtDestino.setBigDecimalAtName("QUANT_DE_ACOES_ORDINARIAS", vQUANT_DE_ACOES_ORDINARIAS); stmtDestino.setBigDecimalAtName("QUANT_DE_ACOES_PREF", vQUANT_DE_ACOES_PREF); stmtDestino.setStringAtName("SITUACAO", vSITUACAO); stmtDestino.setDateAtName("DATA_DA_SITUACAO", vDATA_DA_SITUACAO); stmtDestino.setStringAtName("TIPO_PAPEL1", vTIPO_PAPEL1); stmtDestino.setStringAtName("TIPO_PAPEL2", vTIPO_PAPEL2); stmtDestino.setStringAtName("TIPO_PAPEL3", vTIPO_PAPEL3); stmtDestino.setStringAtName("TIPO_PAPEL4", vTIPO_PAPEL4); stmtDestino.setStringAtName("TIPO_PAPEL5", vTIPO_PAPEL5); stmtDestino.setStringAtName("TIPO_PAPEL6", vTIPO_PAPEL6); stmtDestino.setStringAtName("CONTROLE_ACIONARIO", vCONTROLE_ACIONARIO); stmtDestino.setDateAtName("DATA_DE_REGISTRO", vDATA_DE_REGISTRO); stmtDestino.setDateAtName("DATA_DO_CANCELAMENTO", vDATA_DO_CANCELAMENTO); stmtDestino.setStringAtName("MERCADO", vMERCADO); stmtDestino.setStringAtName("BOLSA1", vBOLSA1); stmtDestino.setStringAtName("BOLSA2", vBOLSA2); stmtDestino.setStringAtName("BOLSA3", vBOLSA3); stmtDestino.setStringAtName("BOLSA4", vBOLSA4); stmtDestino.setStringAtName("BOLSA5", vBOLSA5); stmtDestino.setStringAtName("BOLSA6", vBOLSA6); stmtDestino.setStringAtName("BOLSA7", vBOLSA7); stmtDestino.setStringAtName("BOLSA8", vBOLSA8); stmtDestino.setStringAtName("BOLSA9", vBOLSA9); stmtDestino.setStringAtName("MOTIVO_DO_CANCELAMENTO", vMOTIVO_DO_CANCELAMENTO); stmtDestino.setBigDecimalAtName("PATRIMONIO_LIQUIDO", vPATRIMONIO_LIQUIDO); stmtDestino.setDateAtName("DATA_DO_PATRIMONIO", vDATA_DO_PATRIMONIO); stmtDestino.setStringAtName("E_MAIL", vE_MAIL); stmtDestino.setStringAtName("NOME_SETOR_ATIVIDADE", vNOME_SETOR_ATIVIDADE); stmtDestino.setDateAtName("DATA_DA_ACAO", vDATA_DA_ACAO); stmtDestino.setStringAtName("TIPO_NEGOCIO1", vTIPO_NEGOCIO1); stmtDestino.setStringAtName("TIPO_NEGOCIO2", vTIPO_NEGOCIO2); stmtDestino.setStringAtName("TIPO_NEGOCIO3", vTIPO_NEGOCIO3); stmtDestino.setStringAtName("TIPO_NEGOCIO4", vTIPO_NEGOCIO4); stmtDestino.setStringAtName("TIPO_NEGOCIO5", vTIPO_NEGOCIO5); stmtDestino.setStringAtName("TIPO_NEGOCIO6", vTIPO_NEGOCIO6); stmtDestino.setStringAtName("TIPO_MERCADO1", vTIPO_MERCADO1); stmtDestino.setStringAtName("TIPO_MERCADO2", vTIPO_MERCADO2); stmtDestino.setStringAtName("TIPO_MERCADO3", vTIPO_MERCADO3); stmtDestino.setStringAtName("TIPO_MERCADO4", vTIPO_MERCADO4); stmtDestino.setStringAtName("TIPO_MERCADO5", vTIPO_MERCADO5); stmtDestino.setStringAtName("TIPO_MERCADO6", vTIPO_MERCADO6); int contagemDasInsercoes = stmtDestino.executeUpdate(); quantidadeDeRegistrosImportada++; double percentualCompleto = (double) quantidadeDeRegistrosImportada / quantidadeDeRegistrosEstimada * 100; pAndamento.setPercentualCompleto((int) percentualCompleto); } conDestino.commit(); } catch (Exception ex) { conDestino.rollback(); ProblemaNaImportacaoDeArquivo problemaDetalhado = new ProblemaNaImportacaoDeArquivo(); problemaDetalhado.nomeDoArquivo = pArquivoTXT.getName(); problemaDetalhado.linhaProblematicaDoArquivo = numeroDoRegistro; problemaDetalhado.detalhesSobreOProblema = ex; throw problemaDetalhado; } finally { pAndamento.setPercentualCompleto(100); in.close(); if (stmtLimpezaInicialDestino != null && (!stmtLimpezaInicialDestino.isClosed())) { stmtLimpezaInicialDestino.close(); } if (stmtDestino != null && (!stmtDestino.isClosed())) { stmtDestino.close(); } } } | public static String getMD5(String s) { try { MessageDigest m = MessageDigest.getInstance("MD5"); m.update(s.getBytes(), 0, s.length()); String result = new BigInteger(1, m.digest()).toString(16); while (result.length() < 32) { result = '0' + result; } return result; } catch (NoSuchAlgorithmException ex) { return null; } } | 18,526 |
0 | public static InputStream sendReq(String url, String content, ConnectData data) { try { URLConnection con = new URL(url).openConnection(); con.setConnectTimeout(TIMEOUT); con.setReadTimeout(TIMEOUT); con.setUseCaches(false); setUA(con); con.setRequestProperty("Accept-Charset", "utf-8"); con.setDoOutput(true); con.setRequestProperty("Content-Type", "application/x-www-form-urlencoded"); if (data.cookie != null) con.setRequestProperty("Cookie", data.cookie); HttpURLConnection httpurl = (HttpURLConnection) con; httpurl.setRequestMethod("POST"); Writer wr = new OutputStreamWriter(con.getOutputStream()); wr.write(content); wr.flush(); con.connect(); InputStream is = con.getInputStream(); is = new BufferedInputStream(is); wr.close(); parseCookie(con, data); return is; } catch (IOException ioe) { Log.except("failed to send request " + url, ioe); } return null; } | boolean copyFileStructure(File oldFile, File newFile) { if (oldFile == null || newFile == null) return false; File searchFile = newFile; do { if (oldFile.equals(searchFile)) return false; searchFile = searchFile.getParentFile(); } while (searchFile != null); if (oldFile.isDirectory()) { if (progressDialog != null) { progressDialog.setDetailFile(oldFile, ProgressDialog.COPY); } if (simulateOnly) { } else { if (!newFile.mkdirs()) return false; } File[] subFiles = oldFile.listFiles(); if (subFiles != null) { if (progressDialog != null) { progressDialog.addWorkUnits(subFiles.length); } for (int i = 0; i < subFiles.length; i++) { File oldSubFile = subFiles[i]; File newSubFile = new File(newFile, oldSubFile.getName()); if (!copyFileStructure(oldSubFile, newSubFile)) return false; if (progressDialog != null) { progressDialog.addProgress(1); if (progressDialog.isCancelled()) return false; } } } } else { if (simulateOnly) { } else { FileReader in = null; FileWriter out = null; try { in = new FileReader(oldFile); out = new FileWriter(newFile); int count; while ((count = in.read()) != -1) out.write(count); } catch (FileNotFoundException e) { return false; } catch (IOException e) { return false; } finally { try { if (in != null) in.close(); if (out != null) out.close(); } catch (IOException e) { return false; } } } } return true; } | 18,527 |
1 | @SuppressWarnings("unchecked") public static void main(String[] args) { System.out.println("Starting encoding test...."); Properties p = new Properties(); try { InputStream pStream = ClassLoader.getSystemResourceAsStream("sample_weather.properties"); p.load(pStream); } catch (Exception e) { System.err.println("Could not load properties file."); System.err.println(e.getMessage()); e.printStackTrace(); return; } if (WeatherUpdater.DEBUG) { System.out.println("hostname: " + p.getProperty("weather.hostname")); } if (WeatherUpdater.DEBUG) { System.out.println("database: " + p.getProperty("weather.database")); } if (WeatherUpdater.DEBUG) { System.out.println("username: " + p.getProperty("weather.username")); } if (WeatherUpdater.DEBUG) { System.out.println("password: " + p.getProperty("weather.password")); } SqlAccount sqlAccount = new SqlAccount(p.getProperty("weather.hostname"), p.getProperty("weather.database"), p.getProperty("weather.username"), p.getProperty("weather.password")); DatabaseInterface dbi = null; try { dbi = new DatabaseInterface(sqlAccount); } catch (Exception e) { System.err.println(e.getMessage()); e.printStackTrace(); return; } System.out.println("Established connection to database."); String query = "SELECT * FROM Current_Weather WHERE ZipCode = '99702'"; ResultTable results; System.out.println("Executing query: " + query); try { results = dbi.executeQuery(query); } catch (Exception e) { System.err.println(e.getMessage()); e.printStackTrace(); return; } System.out.println("Got results from query."); System.out.println("Converted results into the following table:"); System.out.println(results); System.out.println(); Class<? extends ResultEncoder> encoder_class; Class<? extends ResultDecoder> decoder_class; try { encoder_class = (Class<? extends ResultEncoder>) Class.forName(p.getProperty("mysms.coding.resultEncoder")); decoder_class = (Class<? extends ResultDecoder>) Class.forName(p.getProperty("mysms.coding.resultDecoder")); } catch (Exception e) { System.err.println("Could not find specified encoder: " + p.getProperty("result.encoder")); System.err.println(e.getMessage()); e.printStackTrace(); return; } System.out.println("Found class of encoder: " + encoder_class); System.out.println("Found class of decoder: " + decoder_class); ResultEncoder encoder; ResultDecoder decoder; try { encoder = encoder_class.newInstance(); if (encoder_class.equals(decoder_class) && decoder_class.isInstance(encoder)) { decoder = (ResultDecoder) encoder; } else { decoder = decoder_class.newInstance(); } } catch (Exception e) { System.err.println("Could not create instances of encoder and decoder."); System.err.println(e.getMessage()); e.printStackTrace(); return; } System.out.println("Created instances of encoder and decoder."); if (decoder.equals(encoder)) { System.out.println("Decoder and encoder are same object."); } ByteBuffer buffer; try { buffer = encoder.encode(null, results); } catch (Exception e) { System.err.println("Could not encode results."); System.err.println(e.getMessage()); e.printStackTrace(); return; } System.out.println("Encoded results to ByteBuffer with size: " + buffer.capacity()); File temp; try { temp = File.createTempFile("encoding_test", ".results"); temp.deleteOnExit(); FileChannel out = new FileOutputStream(temp).getChannel(); out.write(buffer); out.close(); } catch (Exception e) { System.err.println("Could not write buffer to file."); System.err.println(e.getMessage()); e.printStackTrace(); return; } System.out.println("Wrote buffer to file: \"" + temp.getName() + "\" with length: " + temp.length()); ByteBuffer re_buffer; try { FileInputStream in = new FileInputStream(temp.getAbsolutePath()); byte[] temp_buffer = new byte[(int) temp.length()]; int totalRead = 0; int numRead = 0; while (totalRead < temp_buffer.length) { numRead = in.read(temp_buffer, totalRead, temp_buffer.length - totalRead); if (numRead < 0) { break; } else { totalRead += numRead; } } re_buffer = ByteBuffer.wrap(temp_buffer); in.close(); } catch (Exception e) { System.err.println("Could not read from temporary file into buffer."); System.err.println(e.getMessage()); e.printStackTrace(); return; } System.out.println("Read file back into buffer with length: " + re_buffer.capacity()); ResultTable re_results; try { re_results = decoder.decode(null, re_buffer); } catch (Exception e) { System.err.println("Could not decode buffer into a ResultTable."); System.err.println(e.getMessage()); e.printStackTrace(); return; } System.out.println("Decoded buffer back into the following table:"); System.out.println(re_results); System.out.println(); System.out.println("... encoding test complete."); } | public byte[] getFile(final String file) throws IOException { if (this.files.contains(file)) { ZipInputStream input = new ZipInputStream(new ByteArrayInputStream(this.bytes)); ZipEntry entry = input.getNextEntry(); while (entry != null) { entry = input.getNextEntry(); if ((entry.getName().equals(file)) && (!entry.isDirectory())) { ByteArrayOutputStream output = new ByteArrayOutputStream(); IOUtils.copy(input, output); output.close(); input.close(); return output.toByteArray(); } } input.close(); } return null; } | 18,528 |
1 | private void btnOkActionPerformed(java.awt.event.ActionEvent evt) { try { int id = 0; String sql = "SELECT MAX(ID) as MAX_ID from CORE_USER_GROUPS"; PreparedStatement pStmt = Database.getMyConnection().prepareStatement(sql); ResultSet rs = pStmt.executeQuery(); if (rs.next()) { id = rs.getInt("MAX_ID") + 1; } else { id = 1; } Database.close(pStmt); sql = "INSERT INTO CORE_USER_GROUPS" + " (ID, GRP_NAME, GRP_DESC, DATE_INITIAL, DATE_FINAL, IND_STATUS)" + " VALUES (?, ?, ?, ?, ?, ?)"; pStmt = Database.getMyConnection().prepareStatement(sql); pStmt.setInt(1, id); pStmt.setString(2, txtGrpName.getText()); pStmt.setString(3, txtGrpDesc.getText()); pStmt.setDate(4, Utils.getTodaySql()); pStmt.setDate(5, Date.valueOf("9999-12-31")); pStmt.setString(6, "A"); pStmt.executeUpdate(); Database.getMyConnection().commit(); Database.close(pStmt); MessageBox.ok("New group added successfully", this); rs = getGroups(); tblGroups.setModel(new GroupsTableModel(rs)); Database.close(rs); } catch (SQLException e) { log.error("Failed with update operation \n" + e.getMessage()); MessageBox.ok("Failed to create the new group in the database", this); try { Database.getMyConnection().rollback(); } catch (Exception inner) { } ; } catch (IllegalArgumentException e) { log.error("Illegal argument for the DATE_FINAL \n" + e.getMessage()); MessageBox.ok("Failed to create the new group in the database", this); try { Database.getMyConnection().rollback(); } catch (Exception inner) { } ; } finally { txtGrpName.setEnabled(false); txtGrpDesc.setEnabled(false); btnOk.setEnabled(false); btnCancel.requestFocus(); } } | public void addGames(List<Game> games) throws StadiumException, SQLException { Connection conn = ConnectionManager.getManager().getConnection(); conn.setAutoCommit(false); PreparedStatement stm = null; ResultSet rs = null; try { for (Game game : games) { stm = conn.prepareStatement(Statements.SELECT_STADIUM); stm.setString(1, game.getStadiumName()); stm.setString(2, game.getStadiumCity()); rs = stm.executeQuery(); int stadiumId = -1; while (rs.next()) { stadiumId = rs.getInt("stadiumID"); } if (stadiumId == -1) throw new StadiumException("No such stadium"); stm = conn.prepareStatement(Statements.INSERT_GAME); stm.setInt(1, stadiumId); stm.setDate(2, game.getGameDate()); stm.setTime(3, game.getGameTime()); stm.setString(4, game.getTeamA()); stm.setString(5, game.getTeamB()); stm.executeUpdate(); int gameId = getMaxId(); List<SectorPrice> sectorPrices = game.getSectorPrices(); for (SectorPrice price : sectorPrices) { stm = conn.prepareStatement(Statements.INSERT_TICKET_PRICE); stm.setInt(1, gameId); stm.setInt(2, price.getSectorId()); stm.setInt(3, price.getPrice()); stm.executeUpdate(); } } } catch (SQLException e) { conn.rollback(); throw e; } finally { rs.close(); stm.close(); } conn.commit(); conn.setAutoCommit(true); } | 18,529 |
1 | public void testAutoCommit() throws Exception { Connection con = getConnectionOverrideProperties(new Properties()); try { Statement stmt = con.createStatement(); assertEquals(0, stmt.executeUpdate("create table #testAutoCommit (i int)")); con.setAutoCommit(false); assertEquals(1, stmt.executeUpdate("insert into #testAutoCommit (i) values (0)")); con.setAutoCommit(false); con.rollback(); assertEquals(1, stmt.executeUpdate("insert into #testAutoCommit (i) values (1)")); con.setAutoCommit(true); con.setAutoCommit(false); con.rollback(); con.setAutoCommit(true); ResultSet rs = stmt.executeQuery("select i from #testAutoCommit"); assertTrue(rs.next()); assertEquals(1, rs.getInt(1)); assertFalse(rs.next()); rs.close(); stmt.close(); } finally { con.close(); } } | void execute(Connection conn, Component parent, String context, final ProgressMonitor progressMonitor, ProgressWrapper progressWrapper) throws Exception { int noOfComponents = m_components.length; Statement statement = null; StringBuffer pmNoteBuf = new StringBuffer(m_update ? "Updating " : "Creating "); pmNoteBuf.append(m_itemNameAbbrev); pmNoteBuf.append(" "); pmNoteBuf.append(m_itemNameValue); final String pmNote = pmNoteBuf.toString(); progressMonitor.setNote(pmNote); try { conn.setAutoCommit(false); int id = -1; if (m_update) { statement = conn.createStatement(); String sql = getUpdateSql(noOfComponents, m_id); statement.executeUpdate(sql); id = m_id; if (m_indexesChanged) deleteComponents(conn, id); } else { PreparedStatement pStmt = getInsertPrepStmt(conn, noOfComponents); pStmt.executeUpdate(); Integer res = DbCommon.getAutoGenId(parent, context, pStmt); if (res == null) return; id = res.intValue(); } if (!m_update || m_indexesChanged) { PreparedStatement insertCompPrepStmt = conn.prepareStatement(getInsertComponentPrepStmtSql()); for (int i = 0; i < noOfComponents; i++) { createComponent(progressMonitor, m_components, pmNote, id, i, insertCompPrepStmt); } } conn.commit(); m_itemTable.getPrimaryId().setVal(m_item, id); m_itemCache.updateCache(m_item, id); } catch (SQLException ex) { try { conn.rollback(); } catch (SQLException e) { e.printStackTrace(); } throw ex; } finally { if (statement != null) { statement.close(); } } } | 18,530 |
1 | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | public BufferedWriter createOutputStream(String inFile, String outFile) throws IOException { int k_blockSize = 1024; int byteCount; char[] buf = new char[k_blockSize]; File ofp = new File(outFile); ZipOutputStream zos = new ZipOutputStream(new FileOutputStream(ofp)); zos.setMethod(ZipOutputStream.DEFLATED); OutputStreamWriter osw = new OutputStreamWriter(zos, "ISO-8859-1"); BufferedWriter bw = new BufferedWriter(osw); ZipEntry zot = null; File ifp = new File(inFile); ZipInputStream zis = new ZipInputStream(new FileInputStream(ifp)); InputStreamReader isr = new InputStreamReader(zis, "ISO-8859-1"); BufferedReader br = new BufferedReader(isr); ZipEntry zit = null; while ((zit = zis.getNextEntry()) != null) { if (zit.getName().equals("content.xml")) { continue; } zot = new ZipEntry(zit.getName()); zos.putNextEntry(zot); while ((byteCount = br.read(buf, 0, k_blockSize)) >= 0) bw.write(buf, 0, byteCount); bw.flush(); zos.closeEntry(); } zos.putNextEntry(new ZipEntry("content.xml")); bw.flush(); osw = new OutputStreamWriter(zos, "UTF8"); bw = new BufferedWriter(osw); return bw; } | 18,531 |
0 | private int writeTraceFile(final File destination_file, final String trace_file_name, final String trace_file_path) { URL url = null; BufferedInputStream is = null; FileOutputStream fo = null; BufferedOutputStream os = null; int b = 0; if (destination_file == null) { return 0; } try { url = new URL("http://" + trace_file_path + "/" + trace_file_name); is = new BufferedInputStream(url.openStream()); fo = new FileOutputStream(destination_file); os = new BufferedOutputStream(fo); while ((b = is.read()) != -1) { os.write(b); } os.flush(); is.close(); os.close(); } catch (Exception e) { System.err.println(url.toString()); Utilities.unexpectedException(e, this, CONTACT); return 0; } return 1; } | String fetch_pls(String pls) { InputStream pstream = null; if (pls.startsWith("http://")) { try { URL url = null; if (running_as_applet) url = new URL(getCodeBase(), pls); else url = new URL(pls); URLConnection urlc = url.openConnection(); pstream = urlc.getInputStream(); } catch (Exception ee) { System.err.println(ee); return null; } } if (pstream == null && !running_as_applet) { try { pstream = new FileInputStream(System.getProperty("user.dir") + System.getProperty("file.separator") + pls); } catch (Exception ee) { System.err.println(ee); return null; } } String line = null; while (true) { try { line = readline(pstream); } catch (Exception e) { } if (line == null) break; if (line.startsWith("File1=")) { byte[] foo = line.getBytes(); int i = 6; for (; i < foo.length; i++) { if (foo[i] == 0x0d) break; } return line.substring(6, i); } } return null; } | 18,532 |
1 | public QueryOutput run() throws Exception { boolean success = false; QueryOutput output = null; if (correlator != null || inMemMaster != null || customMatcher != null) { List<Object[]> rows = inMemMaster == null ? (correlator == null ? customMatcher.onCycleEnd() : correlator.onCycleEnd()) : inMemMaster.onCycleEnd(); if (rows.isEmpty()) { success = true; return null; } output = new DirectQueryOutput(rows); } else { connection = queryContext.createConnection(); try { connection.setAutoCommit(false); connection.setTransactionIsolation(Connection.TRANSACTION_READ_UNCOMMITTED); thePreparedStatement = connection.prepareStatement(thePreparedStatementSQL); RowStatusHelper.setStatusValues(statusAndPositions, thePreparedStatement, queryContext.getRunCount()); long newResultIdsAfter = lastRowIdInsertedNow; int rows = thePreparedStatement.executeUpdate(); if (rows <= 0) { success = true; return null; } lastRowIdInsertedNow = getLastRowIdInResultTable(newResultIdsAfter, rows); output = new DBQueryOutput(newResultIdsAfter, lastRowIdInsertedNow, rows, timeKeeper.getTimeMsecs()); success = true; } finally { if (connection != null) { if (success) { connection.commit(); } else { connection.rollback(); } } } } return output; } | public static ResultSet execute(String commands) { ResultSet rs = null; BufferedReader reader = new BufferedReader(new StringReader(commands)); String sqlCommand = null; Connection conn = ConnPool.getConnection(); try { Statement stmt = conn.createStatement(); while ((sqlCommand = reader.readLine()) != null) { sqlCommand = sqlCommand.toLowerCase().trim(); if (sqlCommand.equals("") || sqlCommand.startsWith("#")) { continue; } if (dmaLogger.isInfoEnabled(SqlExecutor.class)) { dmaLogger.logInfo("Executing SQL: " + sqlCommand, SqlExecutor.class); } long currentTimeMillis = System.currentTimeMillis(); if (sqlCommand.startsWith("select")) { rs = stmt.executeQuery(sqlCommand); } else { stmt.executeUpdate(sqlCommand); } dmaLogger.logInfo(DateUtil.getElapsedTime("SQL execution of " + sqlCommand + " took: ", (System.currentTimeMillis() - currentTimeMillis)), SqlExecutor.class); } if (rs == null) { stmt.close(); } return rs; } catch (SQLException e) { try { conn.rollback(); } catch (SQLException se) { } throw new RuntimeException("Execution of " + sqlCommand + " failed:" + e.getMessage(), e); } catch (IOException e) { try { conn.rollback(); } catch (SQLException se) { } throw new RuntimeException("Execution of " + sqlCommand + " failed:", e); } finally { ConnPool.releaseConnection(conn); } } | 18,533 |
0 | private String send(String method, String contentType, String urlStr, String body) throws MalformedURLException, IOException { HttpURLConnection postCon = (HttpURLConnection) new URL(getUrl(urlStr)).openConnection(); postCon.setRequestMethod(method); postCon.setDoOutput(true); postCon.setDoInput(true); if (cookie != null) { postCon.setRequestProperty("Cookie", cookie); if (contentType != null) { postCon.setRequestProperty("Content-type", contentType); } postCon.setRequestProperty("Content-Length", body == null ? "0" : Integer.toString(body.length())); } if (body != null) { OutputStream os = postCon.getOutputStream(); OutputStreamWriter out = new OutputStreamWriter(os); out.write(body); out.close(); } InputStream is = null; try { is = postCon.getInputStream(); } catch (IOException ioe) { is = postCon.getErrorStream(); } int resCode = postCon.getResponseCode(); if (resCode == 201 || resCode == 202) { String loc = postCon.getHeaderField("Location"); System.out.println("loc:" + loc); return loc; } StringBuffer sb = StreamUtil.readStream(is); return sb.toString(); } | public void insertStringInFile(String file, String textToInsert, long fromByte, long toByte) throws Exception { String tmpFile = file + ".tmp"; BufferedInputStream in = null; BufferedOutputStream out = null; long byteCount = 0; try { in = new BufferedInputStream(new FileInputStream(new File(file))); out = new BufferedOutputStream(new FileOutputStream(tmpFile)); long size = fromByte; byte[] buf = null; if (size == 0) { } else { buf = new byte[(int) size]; int length = -1; if ((length = in.read(buf)) != -1) { out.write(buf, 0, length); byteCount = byteCount + length; } else { String msg = "Failed to read the first '" + size + "' bytes of file '" + file + "'. This might be a programming error."; logger.warning(msg); throw new Exception(msg); } } buf = textToInsert.getBytes(); int length = buf.length; out.write(buf, 0, length); byteCount = byteCount + length; long skipLength = toByte - fromByte; long skippedBytes = in.skip(skipLength); if (skippedBytes == -1) { } else { buf = new byte[4096]; length = -1; while ((length = in.read(buf)) != -1) { out.write(buf, 0, length); byteCount = byteCount + length; } } in.close(); in = null; out.close(); out = null; File fileToDelete = new File(file); boolean wasDeleted = fileToDelete.delete(); if (!wasDeleted) { String msg = "Failed to delete the original file '" + file + "' to replace it with the modified file after text insertion."; logger.warning(msg); throw new Exception(msg); } File fileToRename = new File(tmpFile); boolean wasRenamed = fileToRename.renameTo(fileToDelete); if (!wasRenamed) { String msg = "Failed to rename tmp file '" + tmpFile + "' to the name of the original file '" + file + "'"; logger.warning(msg); throw new Exception(msg); } } catch (Exception e) { logger.log(Level.WARNING, "Failed to read/write file '" + file + "'.", e); throw e; } finally { if (in != null) { try { in.close(); } catch (IOException e) { logger.log(Level.FINEST, "Ignoring error closing input file '" + file + "'.", e); } } if (out != null) { try { out.close(); } catch (IOException e) { logger.log(Level.FINEST, "Ignoring error closing output file '" + tmpFile + "'.", e); } } } } | 18,534 |
1 | public static void decompressFile(File f) throws IOException { File target = new File(f.toString().substring(0, f.toString().length() - 3)); System.out.print("Decompressing: " + f.getName() + ".. "); long initialSize = f.length(); GZIPInputStream in = new GZIPInputStream(new FileInputStream(f)); FileOutputStream fos = new FileOutputStream(target); byte[] buf = new byte[1024]; int read; while ((read = in.read(buf)) != -1) { fos.write(buf, 0, read); } System.out.println("Done."); fos.close(); in.close(); long endSize = target.length(); System.out.println("Initial size: " + initialSize + "; Decompressed size: " + endSize); } | public void compressImage(InputStream input, String output, DjatokaEncodeParam params) throws DjatokaException { if (params == null) params = new DjatokaEncodeParam(); File inputFile; try { inputFile = File.createTempFile("tmp", ".tif"); inputFile.deleteOnExit(); IOUtils.copyStream(input, new FileOutputStream(inputFile)); if (params.getLevels() == 0) { ImageRecord dim = ImageRecordUtils.getImageDimensions(inputFile.getAbsolutePath()); params.setLevels(ImageProcessingUtils.getLevelCount(dim.getWidth(), dim.getHeight())); dim = null; } } catch (IOException e) { logger.error(e, e); throw new DjatokaException(e); } compressImage(inputFile.getAbsolutePath(), output, params); if (inputFile != null) inputFile.delete(); } | 18,535 |
0 | protected static String readAFewChars(URL url) throws IOException { StringBuffer buf = new StringBuffer(10); Reader reader = new InputStreamReader(url.openStream()); for (int i = 0; i < 10; i++) { int c = reader.read(); if (c == -1) { break; } buf.append((char) c); } reader.close(); return buf.toString(); } | public static String hashString(String sPassword) { if (sPassword == null || sPassword.equals("")) { return "empty:"; } else { try { MessageDigest md = MessageDigest.getInstance("SHA-1"); md.update(sPassword.getBytes("UTF-8")); byte[] res = md.digest(); return "sha1:" + byte2hex(res); } catch (NoSuchAlgorithmException e) { return "plain:" + sPassword; } catch (UnsupportedEncodingException e) { return "plain:" + sPassword; } } } | 18,536 |
1 | public static String hash(String str) { if (str == null || str.length() == 0) { throw new CaptureSecurityException("String to encript cannot be null or zero length"); } StringBuilder hexString = new StringBuilder(); try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(str.getBytes()); byte[] hash = md.digest(); for (byte element : hash) { if ((0xff & element) < 0x10) { hexString.append('0').append(Integer.toHexString((0xFF & element))); } else { hexString.append(Integer.toHexString(0xFF & element)); } } } catch (NoSuchAlgorithmException e) { throw new CaptureSecurityException(e); } return hexString.toString(); } | @Override protected Object transform(Row inputs) throws FunctionException { StringBuffer buffer = new StringBuffer(); for (IColumn c : inputs.getColumns()) { buffer.append(c.getValueAsString() + "|"); } try { MessageDigest digest = java.security.MessageDigest.getInstance("MD5"); digest.update(buffer.toString().getBytes()); byte[] hash = digest.digest(); return getHex(hash); } catch (Exception e) { throw new FunctionException(e); } } | 18,537 |
1 | @Override public void run() { try { File[] inputFiles = new File[this.previousFiles != null ? this.previousFiles.length + 1 : 1]; File copiedInput = new File(this.randomFolder, this.inputFile.getName()); IOUtils.copyFile(this.inputFile, copiedInput); inputFiles[inputFiles.length - 1] = copiedInput; if (previousFiles != null) { for (int i = 0; i < this.previousFiles.length; i++) { File prev = this.previousFiles[i]; File copiedPrev = new File(this.randomFolder, prev.getName()); IOUtils.copyFile(prev, copiedPrev); inputFiles[i] = copiedPrev; } } org.happycomp.radiog.Activator activator = org.happycomp.radiog.Activator.getDefault(); if (this.exportedMP3File != null) { EncodingUtils.encodeToWavAndThenMP3(inputFiles, this.exportedWavFile, this.exportedMP3File, this.deleteOnExit, this.randomFolder, activator.getCommandsMap()); } else { EncodingUtils.encodeToWav(inputFiles, this.exportedWavFile, randomFolder, activator.getCommandsMap()); } if (encodeMonitor != null) { encodeMonitor.setEncodingFinished(true); } } catch (IOException e) { LOGGER.log(Level.SEVERE, e.getMessage(), e); } } | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | 18,538 |
0 | @Test public void testCopy_readerToOutputStream_nullOut() throws Exception { InputStream in = new ByteArrayInputStream(inData); in = new YellOnCloseInputStreamTest(in); Reader reader = new InputStreamReader(in, "US-ASCII"); try { IOUtils.copy(reader, (OutputStream) null); fail(); } catch (NullPointerException ex) { } } | private ContactModel convertJajahContactToContact(com.funambol.jajah.www.Contact jajahContact) throws JajahException { String temp; if (log.isTraceEnabled()) { log.trace("Converting Jajah contact to Foundation contact: Name:" + jajahContact.getName() + " Email:" + jajahContact.getEmail()); } try { ContactModel contactModel; Contact contact = new Contact(); if (jajahContact.getName() != null && jajahContact.getName().equals("") == false) { if (log.isDebugEnabled()) { log.debug("NAME: " + jajahContact.getName()); } contact.getName().getFirstName().setPropertyValue(jajahContact.getName()); } if (jajahContact.getEmail() != null && jajahContact.getEmail().equals("") == false) { if (log.isDebugEnabled()) { log.debug("EMAIL1_ADDRESS: " + jajahContact.getEmail()); } Email email1 = new Email(); email1.setEmailType(SIFC.EMAIL1_ADDRESS); email1.setPropertyValue(jajahContact.getEmail()); contact.getPersonalDetail().addEmail(email1); } if (jajahContact.getMobile() != null && jajahContact.getMobile().equals("") == false) { if (log.isDebugEnabled()) { log.debug("MOBILE_TELEPHONE_NUMBER: " + jajahContact.getMobile()); } Phone phone = new Phone(); phone.setPhoneType(SIFC.MOBILE_TELEPHONE_NUMBER); temp = jajahContact.getMobile().replace("-", ""); if (!(temp.startsWith("+") || temp.startsWith("00"))) temp = "+".concat(temp); phone.setPropertyValue(temp); contact.getPersonalDetail().addPhone(phone); } if (jajahContact.getLandline() != null && jajahContact.getLandline().equals("") == false) { if (log.isDebugEnabled()) { log.debug("HOME_TELEPHONE_NUMBER: " + jajahContact.getLandline()); } Phone phone = new Phone(); phone.setPhoneType(SIFC.HOME_TELEPHONE_NUMBER); temp = jajahContact.getLandline().replace("-", ""); if (!(temp.startsWith("+") || temp.startsWith("00"))) temp = "+".concat(temp); phone.setPropertyValue(temp); contact.getPersonalDetail().addPhone(phone); } if (jajahContact.getOffice() != null && jajahContact.getOffice().equals("") == false) { if (log.isDebugEnabled()) { log.debug("BUSINESS_TELEPHONE_NUMBER: " + jajahContact.getOffice()); } Phone phone = new Phone(); phone.setPhoneType(SIFC.BUSINESS_TELEPHONE_NUMBER); temp = jajahContact.getOffice().replace("-", ""); if (!(temp.startsWith("+") || temp.startsWith("00"))) temp = "+".concat(temp); phone.setPropertyValue(temp); contact.getBusinessDetail().addPhone(phone); } if (log.isDebugEnabled()) { log.debug("CONTACT_ID: " + jajahContact.getId()); } contactModel = new ContactModel(String.valueOf(jajahContact.getId()), contact); ContactToSIFC convert = new ContactToSIFC(null, null); String sifObject = convert.convert(contactModel); MessageDigest m = MessageDigest.getInstance("MD5"); m.update(sifObject.getBytes()); String md5Hash = (new BigInteger(m.digest())).toString(); contactModel.setMd5Hash(md5Hash); return contactModel; } catch (Exception e) { throw new JajahException("JAJAH - convertJajahContactToContact error: " + e.getMessage()); } } | 18,539 |
0 | public SequenceIterator call(SequenceIterator[] arguments, XPathContext context) throws XPathException { try { String encodedString = ((StringValue) arguments[0].next()).getStringValue(); byte[] decodedBytes = Base64.decode(encodedString); if (arguments.length > 1 && ((BooleanValue) arguments[1].next()).getBooleanValue()) { ByteArrayInputStream bis = new ByteArrayInputStream(decodedBytes); GZIPInputStream zis = new GZIPInputStream(bis); ByteArrayOutputStream baos = new ByteArrayOutputStream(); IOUtils.copy(zis, baos); decodedBytes = baos.toByteArray(); } Document doc = XmlUtils.stringToDocument(new String(decodedBytes, "UTF-8")); Source source = new DOMSource(doc.getDocumentElement()); XPathEvaluator evaluator = new XPathEvaluator(context.getConfiguration()); NodeInfo[] infos = new NodeInfo[] { evaluator.setSource(source) }; return new ArrayIterator(infos); } catch (Exception e) { throw new XPathException("Could not base64 decode string", e); } } | public DataSet newparse() throws SnifflibDatatypeException { NumberFormat numformat = NumberFormat.getInstance(); if (this.headers.size() != this.types.size()) { throw new SnifflibDatatypeException("Different number of headers (" + this.headers.size() + ") and types(" + this.types.size() + ")."); } DataSet out = null; if (!this.dryrun) { out = new DataSet(); } BufferedReader r = null; StreamTokenizer tokenizer = null; try { if (this.isURL) { if (this.url2goto == null) { return (null); } DataInputStream in = null; try { in = new DataInputStream(this.url2goto.openStream()); System.out.println("READY TO READ FROM URL:" + url2goto); r = new BufferedReader(new InputStreamReader(in)); } catch (Exception err) { throw new RuntimeException("Problem reading from URL " + this.url2goto + ".", err); } } else { if (this.file == null) { throw new RuntimeException("Data file to be parsed can not be null."); } if (!this.file.exists()) { throw new RuntimeException("The file " + this.file + " does not exist."); } r = new BufferedReader(new FileReader(this.file)); } if (this.ignorePreHeaderLines > 0) { String strLine; int k = 0; while ((k < this.ignorePreHeaderLines) && ((strLine = r.readLine()) != null)) { k++; } } tokenizer = new StreamTokenizer(r); tokenizer.resetSyntax(); tokenizer.eolIsSignificant(true); boolean parseNumbers = false; for (int k = 0; k < this.types.size(); k++) { Class type = (Class) this.types.get(k); if (Number.class.isAssignableFrom(type)) { parseNumbers = true; break; } } if (parseNumbers) { tokenizer.parseNumbers(); } tokenizer.eolIsSignificant(true); if (this.delimiter.equals("\\t")) { tokenizer.whitespaceChars('\t', '\t'); tokenizer.quoteChar('"'); tokenizer.whitespaceChars(' ', ' '); } else if (this.delimiter.equals(",")) { tokenizer.quoteChar('"'); tokenizer.whitespaceChars(',', ','); tokenizer.whitespaceChars(' ', ' '); } else { if (this.delimiter.length() > 1) { throw new RuntimeException("Delimiter must be a single character. Multiple character delimiters are not allowed."); } if (this.delimiter.length() > 0) { tokenizer.whitespaceChars(this.delimiter.charAt(0), this.delimiter.charAt(0)); } else { tokenizer.wordChars(Character.MIN_VALUE, Character.MAX_VALUE); tokenizer.eolIsSignificant(true); tokenizer.ordinaryChar('\n'); } } boolean readingHeaders = true; boolean readingInitialValues = false; boolean readingData = false; boolean readingScientificNotation = false; if (this.headers.size() > 0) { readingHeaders = false; readingInitialValues = true; } if (this.types.size() > 0) { readingInitialValues = false; Class targetclass; for (int j = 0; j < this.types.size(); j++) { targetclass = (Class) this.types.get(j); try { this.constructors.add(targetclass.getConstructor(String.class)); } catch (java.lang.NoSuchMethodException err) { throw new SnifflibDatatypeException("Could not find appropriate constructor for " + targetclass + ". " + err.getMessage()); } } readingData = true; } int currentColumn = 0; int currentRow = 0; this.rowcount = 0; boolean advanceField = true; while (true) { tokenizer.nextToken(); switch(tokenizer.ttype) { case StreamTokenizer.TT_WORD: { advanceField = true; if (readingScientificNotation) { throw new RuntimeException("Problem reading scientific notation at row " + currentRow + " column " + currentColumn + "."); } if (readingHeaders) { this.headers.add(tokenizer.sval); } else { if (readingInitialValues) { this.types.add(String.class); } if (!this.dryrun) { if (out.getColumnCount() <= currentColumn) { out.addColumn((String) this.headers.get(currentColumn), (Class) this.types.get(currentColumn)); } } try { Constructor construct; if (currentColumn < this.constructors.size()) { construct = (Constructor) this.constructors.get(currentColumn); } else { Class targetclass = (Class) this.types.get(currentColumn); construct = targetclass.getConstructor(String.class); this.constructors.add(construct); } try { try { try { if (!this.dryrun) { out.setValueAt(construct.newInstance((String) tokenizer.sval), currentRow, currentColumn); } else if (this.findingTargetValue) { Object vvv = construct.newInstance((String) tokenizer.sval); this.valueQueue.push(vvv); if ((this.targetRow == currentRow) && (this.targetColumn == currentColumn)) { this.targetValue = vvv; r.close(); return (null); } } } catch (java.lang.reflect.InvocationTargetException err) { throw new SnifflibDatatypeException("Problem constructing 1" + err.getMessage()); } } catch (java.lang.IllegalAccessException err) { throw new SnifflibDatatypeException("Problem constructing 2" + err.getMessage()); } } catch (java.lang.InstantiationException err) { throw new SnifflibDatatypeException("Problem constructing 3" + err.getMessage()); } } catch (java.lang.NoSuchMethodException err) { throw new SnifflibDatatypeException("Problem constructing 4" + err.getMessage()); } } break; } case StreamTokenizer.TT_NUMBER: { advanceField = true; if (readingHeaders) { throw new SnifflibDatatypeException("Expecting string header at row=" + currentRow + ", column=" + currentColumn + "."); } else { if (readingInitialValues) { this.types.add(Double.class); } if (!this.dryrun) { if (out.getColumnCount() <= currentColumn) { out.addColumn((String) this.headers.get(currentColumn), (Class) this.types.get(currentColumn)); } } try { Constructor construct; if (currentColumn < this.constructors.size()) { construct = (Constructor) this.constructors.get(currentColumn); } else { Class targetclass = (Class) this.types.get(currentColumn); construct = targetclass.getConstructor(double.class); this.constructors.add(construct); } if (readingScientificNotation) { Double val = this.scientificNumber; if (!this.dryrun) { try { out.setValueAt(new Double(val.doubleValue() * tokenizer.nval), currentRow, currentColumn); } catch (Exception err) { throw new SnifflibDatatypeException("Problem constructing " + construct.getDeclaringClass() + "at row " + currentRow + " column " + currentColumn + ".", err); } } else if (this.findingTargetValue) { Double NVAL = new Double(tokenizer.nval); Object vvv = null; try { vvv = Double.parseDouble(val + "E" + NVAL.intValue()); } catch (Exception err) { throw new RuntimeException("Problem parsing scientific notation at row=" + currentRow + " col=" + currentColumn + ".", err); } tokenizer.nextToken(); if (tokenizer.ttype != 'e') { this.valueQueue.push(vvv); if ((this.targetRow == currentRow) && (this.targetColumn == currentColumn)) { this.targetValue = vvv; r.close(); return (null); } currentColumn++; } else { tokenizer.pushBack(); } } readingScientificNotation = false; } else { try { this.scientificNumber = new Double(tokenizer.nval); if (!this.dryrun) { out.setValueAt(this.scientificNumber, currentRow, currentColumn); } else if (this.findingTargetValue) { this.valueQueue.push(this.scientificNumber); if ((this.targetRow == currentRow) && (this.targetColumn == currentColumn)) { this.targetValue = this.scientificNumber; r.close(); return (null); } } } catch (Exception err) { throw new SnifflibDatatypeException("Problem constructing " + construct.getDeclaringClass() + "at row " + currentRow + " column " + currentColumn + ".", err); } } } catch (java.lang.NoSuchMethodException err) { throw new SnifflibDatatypeException("Problem constructing" + err.getMessage()); } } break; } case StreamTokenizer.TT_EOL: { if (readingHeaders) { readingHeaders = false; readingInitialValues = true; } else { if (readingInitialValues) { readingInitialValues = false; readingData = true; } } if (readingData) { if (valueQueue.getUpperIndex() < currentRow) { valueQueue.push(""); } currentRow++; } break; } case StreamTokenizer.TT_EOF: { if (readingHeaders) { throw new SnifflibDatatypeException("End of file reached while reading headers."); } if (readingInitialValues) { throw new SnifflibDatatypeException("End of file reached while reading initial values."); } if (readingData) { readingData = false; } break; } default: { if (tokenizer.ttype == '"') { advanceField = true; if (readingHeaders) { this.headers.add(tokenizer.sval); } else { if (readingInitialValues) { this.types.add(String.class); } if (!this.dryrun) { if (out.getColumnCount() <= currentColumn) { out.addColumn((String) this.headers.get(currentColumn), (Class) this.types.get(currentColumn)); } } try { Constructor construct; if (currentColumn < this.constructors.size()) { construct = (Constructor) this.constructors.get(currentColumn); } else { Class targetclass = (Class) this.types.get(currentColumn); construct = targetclass.getConstructor(String.class); this.constructors.add(construct); } try { try { try { if (!this.dryrun) { out.setValueAt(construct.newInstance((String) tokenizer.sval), currentRow, currentColumn); } else if (this.findingTargetValue) { Object vvv = construct.newInstance((String) tokenizer.sval); this.valueQueue.push(vvv); if ((this.targetRow == currentRow) && (this.targetColumn == currentColumn)) { this.targetValue = vvv; r.close(); return (null); } } } catch (java.lang.reflect.InvocationTargetException err) { throw new SnifflibDatatypeException("Problem constructing a " + construct, err); } } catch (java.lang.IllegalAccessException err) { throw new SnifflibDatatypeException("Problem constructing 2 ", err); } } catch (java.lang.InstantiationException err) { throw new SnifflibDatatypeException("Problem constructing 3 ", err); } } catch (java.lang.NoSuchMethodException err) { throw new SnifflibDatatypeException("Problem constructing 4", err); } } } else if (tokenizer.ttype == 'e') { Class targetclass = (Class) this.types.get(currentColumn); if (Number.class.isAssignableFrom(targetclass)) { currentColumn--; readingScientificNotation = true; advanceField = false; } } else { advanceField = false; } break; } } if (tokenizer.ttype == StreamTokenizer.TT_EOF) { advanceField = false; break; } if (advanceField) { currentColumn++; if (!readingHeaders) { if (currentColumn >= this.headers.size()) { currentColumn = 0; } } } } if (!readingHeaders) { this.rowcount = currentRow; } else { this.rowcount = 0; readingHeaders = false; if (this.ignorePostHeaderLines > 0) { String strLine; int k = 0; while ((k < this.ignorePostHeaderLines) && ((strLine = r.readLine()) != null)) { k++; } } } r.close(); } catch (java.io.IOException err) { throw new SnifflibDatatypeException(err.getMessage()); } if (!this.dryrun) { for (int j = 0; j < this.headers.size(); j++) { out.setColumnName(j, (String) this.headers.get(j)); } } return (out); } | 18,540 |
1 | public void write(OutputStream out, String className, InputStream classDefStream) throws IOException { ByteArrayOutputStream a = new ByteArrayOutputStream(); IOUtils.copy(classDefStream, a); a.close(); DataOutputStream da = new DataOutputStream(out); da.writeUTF(className); da.writeUTF(new String(base64.cipher(a.toByteArray()))); } | void copyFile(String src, String dest) throws IOException { int amount; byte[] buffer = new byte[4096]; FileInputStream in = new FileInputStream(src); FileOutputStream out = new FileOutputStream(dest); while ((amount = in.read(buffer)) != -1) out.write(buffer, 0, amount); in.close(); out.close(); } | 18,541 |
1 | public static FileChannel getFileChannel(Object o) throws IOException { Class c = o.getClass(); try { Method m = c.getMethod("getChannel", null); return (FileChannel) m.invoke(o, null); } catch (IllegalAccessException x) { } catch (NoSuchMethodException x) { } catch (InvocationTargetException x) { if (x.getTargetException() instanceof IOException) throw (IOException) x.getTargetException(); } if (o instanceof FileInputStream) return new MyFileChannelImpl((FileInputStream) o); if (o instanceof FileOutputStream) return new MyFileChannelImpl((FileOutputStream) o); if (o instanceof RandomAccessFile) return new MyFileChannelImpl((RandomAccessFile) o); Assert.UNREACHABLE(o.getClass().toString()); return null; } | @Override public void run() { try { FileChannel in = new FileInputStream(inputfile).getChannel(); long pos = 0; for (int i = 1; i <= noofparts; i++) { FileChannel out = new FileOutputStream(outputfile.getAbsolutePath() + "." + "v" + i).getChannel(); status.setText("Rozdělovač: Rozděluji část " + i + ".."); if (remainingsize >= splitsize) { in.transferTo(pos, splitsize, out); pos += splitsize; remainingsize -= splitsize; } else { in.transferTo(pos, remainingsize, out); } pb.setValue(100 * i / noofparts); out.close(); } in.close(); if (deleteOnFinish) new File(inputfile + "").delete(); status.setText("Rozdělovač: Hotovo.."); JOptionPane.showMessageDialog(null, "Rozděleno!", "Rozdělovač", JOptionPane.INFORMATION_MESSAGE); } catch (IOException ex) { } } | 18,542 |
0 | private void packageDestZip(File tmpFile) throws FileNotFoundException, IOException { log("Creating launch profile package " + destfile); ZipOutputStream out = new ZipOutputStream(new BufferedOutputStream(new FileOutputStream(destfile))); ZipEntry e = new ZipEntry(RESOURCE_JAR_FILENAME); e.setMethod(ZipEntry.STORED); e.setSize(tmpFile.length()); e.setCompressedSize(tmpFile.length()); e.setCrc(calcChecksum(tmpFile, new CRC32())); out.putNextEntry(e); InputStream in = new BufferedInputStream(new FileInputStream(tmpFile)); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.closeEntry(); out.finish(); out.close(); } | public String ask(String s) { System.out.println("asking ---> " + s); try { String result = null; URL url = new URL("http://www.google.com/search?hl=en&rls=GGLR,GGLR:2005-50,GGLR:en&sa=X&oi=spell&resnum=0&ct=result&cd=1&q=" + URLEncoder.encode(s, "UTF-8")); URLConnection connection = url.openConnection(); connection.setRequestProperty("User-Agent", "Mozilla/4.0 (compatible; MSIE 6.0; Windows NT 5.1)"); connection.setDoOutput(false); BufferedReader in = new BufferedReader(new InputStreamReader(connection.getInputStream(), "UTF-8")); String inputLine; while ((inputLine = in.readLine()) != null) { int textPos = inputLine.indexOf("Web definitions for "); if (textPos >= 0) { int ltrPos = inputLine.indexOf("<font size=-1>", textPos + 18); if (ltrPos >= 0) { int closePos = inputLine.indexOf("<", ltrPos + 14); if (closePos >= 0) { result = inputLine.substring(ltrPos + 14, closePos); } } } else { int ltrPos = inputLine.indexOf("— Location: "); if (ltrPos >= 0) { int closePos = inputLine.indexOf("<br", ltrPos + 18); if (closePos >= 0) { result = inputLine.substring(ltrPos + 18, closePos); } } } } in.close(); if (result != null) { result = result.replaceAll("<b>", ""); result = result.replaceAll("</b>", ""); result = result.replaceAll("("|')", "'"); System.out.println("result ---> " + result); } else { System.out.println("result ---> none!"); String ss = s.toUpperCase(); if (ss.startsWith("WHAT IS ")) { String toSearch = ss.substring(8).trim(); try { String str = getResultStr("http://www.google.com/search?hl=en&q=define%3A" + toSearch); str = cutAfter(str, "on the Web"); str = cutAfter(str, "<li>"); str = getBefore(str, "<br>"); result = str.replaceAll("\n", ""); } catch (Exception ee) { } } } return result; } catch (Exception e) { e.printStackTrace(); } return null; } | 18,543 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public static final boolean zipExtract(String zipfile, String name, String dest) { boolean f = false; try { InputStream in = new BufferedInputStream(new FileInputStream(zipfile)); ZipInputStream zin = new ZipInputStream(in); ZipEntry e; while ((e = zin.getNextEntry()) != null) { if (e.getName().equals(name)) { FileOutputStream out = new FileOutputStream(dest); byte b[] = new byte[TEMP_FILE_BUFFER_SIZE]; int len = 0; while ((len = zin.read(b)) != -1) out.write(b, 0, len); out.close(); f = true; break; } } zin.close(); } catch (FileNotFoundException e) { MLUtil.runtimeError(e, "extractZip " + zipfile + " " + name); } catch (IOException e) { MLUtil.runtimeError(e, "extractZip " + zipfile + " " + name); } return (f); } | 18,544 |
1 | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | public static void main(String[] args) { if (args.length < 2) { System.out.println(" *** DDL (creates) and DML (inserts) script importer from DB ***"); System.out.println(" You must specify name of the file with script importing data"); System.out.println(" Fisrt rows of this file must be:"); System.out.println(" 1) JDBC driver class for your DBMS"); System.out.println(" 2) URL for your database instance"); System.out.println(" 3) user in that database (with sufficient priviliges)"); System.out.println(" 4) password of that user"); System.out.println(" Next rows can have:"); System.out.println(" '}' before table to create,"); System.out.println(" '{' before schema to create tables in,"); System.out.println(" ')' before table to insert into,"); System.out.println(" '(' before schema to insert into tables in."); System.out.println(" '!' before row means that it is a comment."); System.out.println(" If some exception is occured, all script is rolled back."); System.out.println(" 2nd command line argument is name of output file;"); System.out.println(" if its extension is *.sql, its format is standard SQL"); System.out.println(" otherwize format is short one, understanded by SQLScript tool"); System.out.println(" Connection information remains unchanged in the last format"); System.out.println(" but in the first one it takes form 'connect user/password@URL'"); System.out.println(" where URL can be formed with different rools for different DBMSs"); System.out.println(" If file (with short format header) already exists and you specify"); System.out.println(" 3rd command line argument -db, we generate objects in the database"); System.out.println(" (known from the file header; must differ from 1st DB) but not in file"); System.out.println(" Note: when importing to a file of short format, line separators"); System.out.println(" in VARCHARS will be lost; LOBs will be empty for any file"); System.exit(0); } try { String[] info = new String[4]; BufferedReader reader = new BufferedReader(new FileReader(new File(args[0]))); Writer writer = null; Connection outConnection = null; try { for (int i = 0; i < info.length; i++) info[i] = reader.readLine(); try { Class.forName(info[0]); Connection connection = DriverManager.getConnection(info[1], info[2], info[3]); int format = args[1].toLowerCase().endsWith("sql") ? SQL_FORMAT : SHORT_FORMAT; File file = new File(args[1]); if (format == SHORT_FORMAT) { if (file.exists() && args.length > 2 && args[2].equalsIgnoreCase("-db")) { String[] outInfo = new String[info.length]; BufferedReader outReader = new BufferedReader(new FileReader(file)); for (int i = 0; i < outInfo.length; i++) outInfo[i] = reader.readLine(); outReader.close(); if (!(outInfo[1].equals(info[1]) && outInfo[2].equals(info[2]))) { Class.forName(info[0]); outConnection = DriverManager.getConnection(outInfo[1], outInfo[2], outInfo[3]); format = SQL_FORMAT; } } } if (outConnection == null) writer = new BufferedWriter(new FileWriter(file)); SQLImporter script = new SQLImporter(outConnection, connection); script.setFormat(format); if (format == SQL_FORMAT) { writer.write("connect " + info[2] + "/" + info[3] + "@" + script.getDatabaseURL(info[1]) + script.statementTerminator); } else { for (int i = 0; i < info.length; i++) writer.write(info[i] + lineSep); writer.write(lineSep); } try { System.out.println(script.executeScript(reader, writer) + " operations with tables has been generated during import"); } catch (SQLException e4) { reader.close(); if (writer != null) writer.close(); else outConnection.close(); System.out.println(" Script generation error: " + e4); } connection.close(); } catch (Exception e3) { reader.close(); if (writer != null) writer.close(); System.out.println(" Connection error: " + e3); } } catch (IOException e2) { System.out.println("Error in file " + args[0]); } } catch (FileNotFoundException e1) { System.out.println("File " + args[0] + " not found"); } } | 18,545 |
0 | public boolean load() { if (getFilename() != null && getFilename().length() > 0) { try { File file = new File(PreferencesManager.getDirectoryLocation("macros") + File.separator + getFilename()); URL url = file.toURL(); InputStreamReader isr = new InputStreamReader(url.openStream()); BufferedReader br = new BufferedReader(isr); String line = br.readLine(); String macro_text = ""; while (line != null) { macro_text = macro_text.concat(line); line = br.readLine(); if (line != null) { macro_text = macro_text.concat(System.getProperty("line.separator")); } } code = macro_text; } catch (Exception e) { System.err.println("Exception at StoredMacro.load(): " + e.toString()); return false; } } return true; } | public String getSource(String urlAdd) throws Exception { HttpURLConnection urlConnection = null; URL url = new URL(urlAdd); urlConnection = (HttpURLConnection) url.openConnection(); urlConnection.setConnectTimeout(timeout); if (!urlConnection.getContentType().contains("text/html")) { throw new Exception(); } if (urlConnection.getResponseCode() != 200) { throw new Exception(); } encoding = getPageEncoding(urlConnection); if (encoding == null) { encoding = defaultEncoding; } InputStream in = url.openStream(); byte[] buffer = new byte[12288]; StringBuffer sb = new StringBuffer(); int bytesRead = 0; while ((bytesRead = in.read(buffer)) != -1) { String reads = new String(buffer, 0, bytesRead, encoding); sb.append(reads); } in.close(); return sb.toString(); } | 18,546 |
1 | public void copy(File source, File dest) throws IOException { System.out.println("copy " + source + " -> " + dest); FileInputStream in = new FileInputStream(source); try { FileOutputStream out = new FileOutputStream(dest); try { byte[] buf = new byte[1024]; int len = 0; while ((len = in.read(buf)) > 0) out.write(buf, 0, len); } finally { out.close(); } } finally { in.close(); } } | public static void copy(String fromFileName, String toFileName) throws IOException { File fromFile = new File(fromFileName); File toFile = new File(toFileName); if (!fromFile.exists()) throw new IOException("FileCopy: " + "no such source file: " + fromFileName); if (!fromFile.isFile()) throw new IOException("FileCopy: " + "can't copy directory: " + fromFileName); if (!fromFile.canRead()) throw new IOException("FileCopy: " + "source file is unreadable: " + fromFileName); if (toFile.isDirectory()) toFile = new File(toFile, fromFile.getName()); if (toFile.exists()) { if (!toFile.canWrite()) throw new IOException("FileCopy: " + "destination file is unwriteable: " + toFileName); } else { String parent = toFile.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) dir.mkdir(); if (dir.isFile()) throw new IOException("FileCopy: " + "destination is not a directory: " + parent); if (!dir.canWrite()) throw new IOException("FileCopy: " + "destination directory is unwriteable: " + parent); } FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(fromFile); to = new FileOutputStream(toFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead); } finally { if (from != null) try { from.close(); } catch (IOException e) { ; } if (to != null) try { to.close(); } catch (IOException e) { ; } } } | 18,547 |
0 | private void uploadLogin() { try { status = UploadStatus.INITIALISING; if (file.length() > 419430400) { JOptionPane.showMessageDialog(neembuuuploader.NeembuuUploader.getInstance(), "<html><b>" + getClass().getSimpleName() + "</b> " + TranslationProvider.get("neembuuuploader.uploaders.maxfilesize") + ": <b>400MB</b></html>", getClass().getSimpleName(), JOptionPane.ERROR_MESSAGE); uploadFailed(); return; } status = UploadStatus.GETTINGCOOKIE; HttpParams params = new BasicHttpParams(); params.setParameter("http.useragent", "Mozilla/5.0 (Windows; U; Windows NT 6.1; en-GB; rv:1.9.2) Gecko/20100115 Firefox/3.6"); DefaultHttpClient httpclient = new DefaultHttpClient(params); httpget = new HttpGet("http://hotfile.com/?cookiecheck=1"); httpget.setHeader("Referer", "http://www.hotfile.com/"); httpget.setHeader("Cache-Control", "max-age=0"); httpget.setHeader("Origin", "http://www.hotfile.com/"); httpget.setHeader("Accept", "application/xml,application/xhtml+xml,text/html;q=0.9,text/plain;q=0.8,image/png,*/*;q=0.5"); httpclient = new DefaultHttpClient(params); httpclient.getCookieStore().addCookie(HotFileAccount.getHfcookie()); HttpResponse httpresponse = httpclient.execute(httpget); strResponse = EntityUtils.toString(httpresponse.getEntity()); start = "<form action=\""; link = strResponse.substring(strResponse.indexOf(start + "http://") + start.length()); link = link.substring(0, link.indexOf("\"")); NULogger.getLogger().info(link); httppost = new HttpPost(link); httppost.setHeader("Referer", "http://www.hotfile.com/"); httppost.setHeader("Cache-Control", "max-age=0"); httppost.setHeader("Origin", "http://www.hotfile.com/"); httppost.setHeader("Accept", "application/xml,application/xhtml+xml,text/html;q=0.9,text/plain;q=0.8,image/png,*/*;q=0.5"); MultipartEntity requestEntity = new MultipartEntity(HttpMultipartMode.BROWSER_COMPATIBLE); requestEntity.addPart("uploads[]", new MonitoredFileBody(file, uploadProgress)); requestEntity.addPart("iagree", new StringBody("on")); requestEntity.addPart("", new StringBody("Upload")); httppost.setEntity(requestEntity); status = UploadStatus.UPLOADING; httpresponse = httpclient.execute(httppost); manageURL = httpresponse.getHeaders("Location")[0].getValue(); NULogger.getLogger().log(Level.INFO, "HotFile Manage URL{0}", manageURL); NULogger.getLogger().info("Getting links from Manage URL"); status = UploadStatus.GETTINGLINK; httpget = new HttpGet(manageURL); httpclient = new DefaultHttpClient(params); httpresponse = httpclient.execute(httpget); strResponse = EntityUtils.toString(httpresponse.getEntity()); start = "<input type=\"text\" name=\"url\" id=\"url\" class=\"textfield\" value=\""; downURL = strResponse.substring(strResponse.indexOf(start) + start.length()); downURL = downURL.substring(0, downURL.indexOf("\"")); start = "<input type=\"text\" name=\"delete\" id=\"delete\" class=\"textfield\" value=\""; delURL = strResponse.substring(strResponse.indexOf(start) + start.length()); delURL = delURL.substring(0, delURL.indexOf("\"")); NULogger.getLogger().log(Level.INFO, "Download Link: {0}", downURL); NULogger.getLogger().log(Level.INFO, "Delete link: {0}", delURL); uploadFinished(); } catch (Exception ex) { ex.printStackTrace(); NULogger.getLogger().severe(ex.toString()); uploadFailed(); } } | public static void copyFile(File src, File dst) throws IOException { FileInputStream fis = null; FileOutputStream fos = null; fis = new FileInputStream(src); fos = new FileOutputStream(dst); byte[] buffer = new byte[16384]; int read = 0; while ((read = fis.read(buffer)) != -1) { fos.write(buffer, 0, read); } fis.close(); fos.flush(); fos.close(); } | 18,548 |
0 | private boolean enregistreToi() { PrintWriter lEcrivain; String laDest = "./img_types/" + sonImage; if (!new File("./img_types").exists()) { new File("./img_types").mkdirs(); } try { FileChannel leFicSource = new FileInputStream(sonFichier).getChannel(); FileChannel leFicDest = new FileOutputStream(laDest).getChannel(); leFicSource.transferTo(0, leFicSource.size(), leFicDest); leFicSource.close(); leFicDest.close(); lEcrivain = new PrintWriter(new FileWriter(new File("bundll/types.jay"), true)); lEcrivain.println(sonNom); lEcrivain.println(sonImage); if (sonOptionRadio1.isSelected()) { lEcrivain.println("0:?"); } if (sonOptionRadio2.isSelected()) { lEcrivain.println("1:" + JOptionPane.showInputDialog(null, "Vous avez choisis de rendre ce terrain difficile � franchir.\nVeuillez en indiquer la raison.", "Demande de pr�cision", JOptionPane.INFORMATION_MESSAGE)); } if (sonOptionRadio3.isSelected()) { lEcrivain.println("2:?"); } lEcrivain.close(); return true; } catch (Exception lException) { return false; } } | private static InputStream openStream(final URL url) throws IOException { try { return (InputStream) AccessController.doPrivileged(new PrivilegedExceptionAction() { public Object run() throws IOException { return url.openStream(); } }); } catch (PrivilegedActionException e) { throw (IOException) e.getException(); } } | 18,549 |
1 | public String downloadToSdCard(String localFileName, String suffixFromHeader, String extension) { InputStream in = null; FileOutputStream fos = null; String absolutePath = null; try { Log.i(TAG, "Opening URL: " + url); StreamAndHeader inAndHeader = HTTPUtils.openWithHeader(url, suffixFromHeader); if (inAndHeader == null || inAndHeader.mStream == null) { return null; } in = inAndHeader.mStream; String sdcardpath = android.os.Environment.getExternalStorageDirectory().getAbsolutePath(); String headerValue = suffixFromHeader == null || inAndHeader.mHeaderValue == null ? "" : inAndHeader.mHeaderValue; headerValue = headerValue.replaceAll("[-:]*\\s*", ""); String filename = sdcardpath + "/" + localFileName + headerValue + (extension == null ? "" : extension); mSize = in.available(); Log.i(TAG, "Downloading " + filename + ", size: " + mSize); fos = new FileOutputStream(new File(filename)); int buffersize = 1024; byte[] buffer = new byte[buffersize]; int readsize = buffersize; mCount = 0; while (readsize != -1) { readsize = in.read(buffer, 0, buffersize); if (readsize > 0) { Log.i(TAG, "Read " + readsize + " bytes..."); fos.write(buffer, 0, readsize); mCount += readsize; } } fos.flush(); fos.close(); FileInputStream controlIn = new FileInputStream(filename); mSavedSize = controlIn.available(); Log.v(TAG, "saved size: " + mSavedSize); mAbsolutePath = filename; done(); } catch (Exception e) { Log.e(TAG, "LoadingWorker.run", e); } finally { HTTPUtils.close(in); } return mAbsolutePath; } | public void writeData(String name, int items, int mznum, int mzscale, long tstart, long tdelta, int[] peaks) { PrintWriter file = getWriter(name + ".txt"); file.println("999 9999"); file.println("Doe, John"); file.println("TEST Lab"); if (mzscale == 1) file.println("PALMS Positive Ion Data"); else if (mzscale == -1) file.println("PALMS Negative Ion Data"); else file.println("PALMS GJIFJIGJ Ion Data"); file.println("TEST Mission"); file.println("1 1"); file.println("1970 01 01 2008 07 09"); file.println("0"); file.println("TIME (UT SECONDS)"); file.println(mznum + 4); for (int i = 0; i < mznum + 4; i++) file.println("1.0"); for (int i = 0; i < mznum + 4; i++) file.println("9.9E29"); file.println("TOTION total MCP signal (electron units)"); file.println("HMASS high mass integral (fraction)"); file.println("UNLIST (unlisted low mass peaks (fraction)"); file.println("UFO unidentified peaks (fraction)"); for (int i = 1; i <= mznum; i++) file.println("MS" + i + " (fraction)"); int header2length = 13; file.println(header2length); for (int i = 0; i < header2length; i++) file.println("1.0"); for (int i = 0; i < header2length; i++) file.println("9.9E29"); file.println("AirCraftTime aircraft time (s)"); file.println("INDEX index ()"); file.println("SCAT scatter (V)"); file.println("JMETER joule meter ()"); file.println("ND neutral density (fraction)"); file.println("SCALEA Mass scale intercept (us)"); file.println("SCALEB mass scale slope (us)"); file.println("NUMPKS number of peaks ()"); file.println("CONF confidence (coded)"); file.println("CAT preliminary category ()"); file.println("AeroDiam aerodynamic diameter (um)"); file.println("AeroDiam1p7 aero diam if density=1.7 (um)"); file.println("TOTBACK total background subtracted (electron units)"); file.println("0"); file.println("0"); String nothing = "0.000000"; for (int i = 0; i < items; i++) { file.println(tstart + (tdelta * i)); file.println(tstart + (tdelta * i) - 3); file.println(i + 1); for (int j = 0; j < 15; j++) file.println(Math.random()); boolean peaked = false; for (int k = 1; k <= mznum; k++) { for (int j = 0; j < peaks.length && !peaked; j++) if (k == peaks[j]) { double randData = (int) (1000000 * (j + 1)); file.println(randData / 1000000); peaked = true; } if (!peaked) file.println(nothing); peaked = false; } } try { Scanner test = new Scanner(f); while (test.hasNext()) { System.out.println(test.nextLine()); } System.out.println("test"); } catch (Exception e) { } file.close(); } | 18,550 |
1 | private void copy(File sourceFile, File destinationFile) { try { FileChannel in = new FileInputStream(sourceFile).getChannel(); FileChannel out = new FileOutputStream(destinationFile).getChannel(); try { in.transferTo(0, in.size(), out); in.close(); out.close(); } catch (IOException e) { GTLogger.getInstance().error(e); } } catch (FileNotFoundException e) { GTLogger.getInstance().error(e); } } | public static void copy(File srcFile, File destFile) throws IOException { FileInputStream in = null; FileOutputStream out = null; try { in = new FileInputStream(srcFile); out = new FileOutputStream(destFile); final byte[] buf = new byte[4096]; int read; while ((read = in.read(buf)) >= 0) { out.write(buf, 0, read); } } finally { try { if (in != null) in.close(); } catch (IOException ioe) { } try { if (out != null) out.close(); } catch (IOException ioe) { } } } | 18,551 |
0 | public static void main(String[] args) throws Exception { String layerName = args[0]; String layerDescription = args[1]; String units = args[2]; String rawDataDirPath = args[3]; String processDirPath = args[4]; String divaDirPath = args[5]; String legendDirPath = args[6]; String geotiffDirPath = args[7]; String dbJdbcUrl = args[8]; String dbUsername = args[9]; String dbPassword = args[10]; String geoserverUsername = args[11]; String geoserverPassword = args[12]; File rawDataDir = new File(rawDataDirPath); if (!rawDataDir.exists() || !rawDataDir.isDirectory()) { throw new RuntimeException("Supplied raw data directory " + rawDataDirPath + " does not exist or is not a directory"); } File processDir = new File(processDirPath); if (!processDir.exists() || !processDir.isDirectory()) { throw new RuntimeException("Supplied process directory " + processDirPath + " does not exist or is not a directory"); } File divaDir = new File(divaDirPath); if (!divaDir.exists() || !divaDir.isDirectory()) { throw new RuntimeException("Supplied diva directory " + divaDirPath + " does not exist or is not a directory"); } File legendDir = new File(legendDirPath); if (!legendDir.exists() || !legendDir.isDirectory()) { throw new RuntimeException("Supplied legend directory " + legendDirPath + " does not exist or is not a directory"); } File geotiffDir = new File(geotiffDirPath); if (!geotiffDir.exists() || !geotiffDir.isDirectory()) { throw new RuntimeException("Supplied geotiff directory " + geotiffDirPath + " does not exist or is not a directory"); } System.out.println("Beginning environmetal load"); System.out.println("Connecting to database"); Class.forName("org.postgresql.Driver"); Properties props = new Properties(); props.setProperty("user", dbUsername); props.setProperty("password", dbPassword); Connection conn = DriverManager.getConnection(dbJdbcUrl, props); conn.setAutoCommit(false); try { File layerProcessDir = new File(processDir, layerName); layerProcessDir.mkdir(); System.out.println("Running gdalwarp"); File hdrFile = new File(rawDataDir, "hdr.adf"); if (!hdrFile.exists()) { throw new RuntimeException("Could not find hdr.adf in " + rawDataDirPath); } File bilFile = new File(layerProcessDir, layerName + ".bil"); Process procGdalWarp = Runtime.getRuntime().exec(new String[] { "gdalwarp", "-of", "EHdr", "-ot", "Float32", hdrFile.getAbsolutePath(), bilFile.getAbsolutePath() }); int gdalWarpReturnVal = procGdalWarp.waitFor(); if (gdalWarpReturnVal != 0) { String gdalWarpErrorOutput = IOUtils.toString(procGdalWarp.getErrorStream()); throw new RuntimeException("gdalwarp failed: " + gdalWarpErrorOutput); } System.out.println("Running Bil2diva"); boolean bil2DivaSuccess = Bil2diva.bil2diva(layerProcessDir.getAbsolutePath() + File.separator + layerName, divaDir.getAbsolutePath() + File.separator + layerName, units); if (!bil2DivaSuccess) { throw new RuntimeException("Bil2diva Failed"); } System.out.println("Running GridLegend"); boolean gridLegendSuccess = GridLegend.generateGridLegend(divaDir.getAbsolutePath() + File.separator + layerName, legendDir.getAbsolutePath() + File.separator + layerName, 1, false); if (!gridLegendSuccess) { throw new RuntimeException("GridLegend Failed"); } System.out.println("Running gdal_translate"); File geotiffFile = new File(geotiffDir, layerName + ".tif"); Process procGdalTranslate = Runtime.getRuntime().exec(new String[] { "gdal_translate", "-of", "GTiff", bilFile.getAbsolutePath(), geotiffFile.getAbsolutePath() }); int gdalTranslateReturnVal = procGdalTranslate.waitFor(); if (gdalTranslateReturnVal != 0) { String gdalTranslateErrorOutput = IOUtils.toString(procGdalTranslate.getErrorStream()); throw new RuntimeException("gdal_translate failed: " + gdalTranslateErrorOutput); } System.out.println("Extracting extents and min/max environmental value from diva .grd file"); File divaGrd = new File(divaDir, layerName + ".grd"); if (!divaGrd.exists()) { throw new RuntimeException("Could not locate diva .grd file: " + divaGrd.toString()); } String strDivaGrd = FileUtils.readFileToString(divaGrd); float minValue = Float.parseFloat(matchPattern(strDivaGrd, "^MinValue=(.+)$")); float maxValue = Float.parseFloat(matchPattern(strDivaGrd, "^MaxValue=(.+)$")); float minLatitude = Float.parseFloat(matchPattern(strDivaGrd, "^MinY=(.+)$")); float maxLatitude = Float.parseFloat(matchPattern(strDivaGrd, "^MaxY=(.+)$")); float minLongitude = Float.parseFloat(matchPattern(strDivaGrd, "^MinX=(.+)$")); float maxLongitude = Float.parseFloat(matchPattern(strDivaGrd, "^MaxX=(.+)$")); System.out.println("Generating ID for new layer..."); Statement st = conn.createStatement(); ResultSet rs = st.executeQuery("SELECT MAX(id) from layers"); rs.next(); int id = 1; String idAsString = rs.getString(1); if (idAsString != null) { id = Integer.parseInt(idAsString); id++; } String displayPath = MessageFormat.format(GEOSERVER_QUERY_TEMPLATE, layerName); System.out.println("Creating layers table entry..."); PreparedStatement createLayersStatement = createLayersInsert(conn, id, layerDescription, divaDir.getAbsolutePath(), layerName, displayPath, minLatitude, minLongitude, maxLatitude, maxLongitude, minValue, maxValue, units); createLayersStatement.execute(); System.out.println("Creating fields table entry..."); PreparedStatement createFieldsStatement = createFieldsInsert(conn, id, layerName, layerDescription); createFieldsStatement.execute(); DefaultHttpClient httpClient = new DefaultHttpClient(); httpClient.getCredentialsProvider().setCredentials(new AuthScope("localhost", 8082), new UsernamePasswordCredentials(geoserverUsername, geoserverPassword)); System.out.println("Creating layer in geoserver..."); HttpPut createLayerPut = new HttpPut(String.format("http://localhost:8082/geoserver/rest/workspaces/ALA/coveragestores/%s/external.geotiff", layerName)); createLayerPut.setHeader("Content-type", "text/plain"); createLayerPut.setEntity(new StringEntity(geotiffFile.toURI().toURL().toString())); HttpResponse createLayerResponse = httpClient.execute(createLayerPut); if (createLayerResponse.getStatusLine().getStatusCode() != 200) { throw new RuntimeException("Error creating layer in geoserver: " + createLayerResponse.toString()); } EntityUtils.consume(createLayerResponse.getEntity()); System.out.println("Creating style in geoserver"); HttpPost createStylePost = new HttpPost("http://localhost:8082/geoserver/rest/styles"); createStylePost.setHeader("Content-type", "text/xml"); createStylePost.setEntity(new StringEntity(String.format("<style><name>%s_style</name><filename>%s.sld</filename></style>", layerName, layerName))); HttpResponse createStyleResponse = httpClient.execute(createLayerPut); if (createStyleResponse.getStatusLine().getStatusCode() != 201) { throw new RuntimeException("Error creating style in geoserver: " + createStyleResponse.toString()); } EntityUtils.consume(createStyleResponse.getEntity()); System.out.println("Uploading sld file to geoserver"); File sldFile = new File(legendDir, layerName + ".sld"); String sldData = FileUtils.readFileToString(sldFile); HttpPut uploadSldPut = new HttpPut(String.format("http://localhost:8082/geoserver/rest/styles/%s_style", layerName)); uploadSldPut.setHeader("Content-type", "application/vnd.ogc.sld+xml"); uploadSldPut.setEntity(new StringEntity(sldData)); HttpResponse uploadSldResponse = httpClient.execute(uploadSldPut); if (uploadSldResponse.getStatusLine().getStatusCode() != 200) { throw new RuntimeException("Error uploading sld file geoserver: " + uploadSldResponse.toString()); } EntityUtils.consume(uploadSldResponse.getEntity()); System.out.println("Setting default style in geoserver"); HttpPut setDefaultStylePut = new HttpPut(String.format("http://localhost:8082/geoserver/rest/layers/ALA:%s", layerName)); setDefaultStylePut.setHeader("Content-type", "text/xml"); setDefaultStylePut.setEntity(new StringEntity(String.format("<layer><enabled>true</enabled><defaultStyle><name>%s_style</name></defaultStyle></layer>", layerName))); HttpResponse setDefaultStyleResponse = httpClient.execute(createLayerPut); if (setDefaultStyleResponse.getStatusLine().getStatusCode() != 200) { throw new RuntimeException("Setting default style in geoserver: " + setDefaultStyleResponse.toString()); } EntityUtils.consume(setDefaultStyleResponse.getEntity()); conn.commit(); } catch (Exception ex) { ex.printStackTrace(); conn.rollback(); } } | public Configuration(URL url) { InputStream in = null; try { load(in = url.openStream()); } catch (Exception e) { throw new RuntimeException("Could not load configuration from " + url, e); } finally { if (in != null) { try { in.close(); } catch (IOException ignore) { } } } } | 18,552 |
0 | public String quebraLink(String link) throws StringIndexOutOfBoundsException { link = link.replace(".url", ""); int cod = 0; final String linkInit = link.replace("#", ""); boolean estado = false; char letra; String linkOrig; String newlink = ""; linkOrig = link.replace("#", ""); linkOrig = linkOrig.replace(".url", ""); linkOrig = linkOrig.replace(".html", ""); linkOrig = linkOrig.replace("http://", ""); if (linkOrig.contains("clubedodownload")) { for (int i = 7; i < linkInit.length(); i++) { if (linkOrig.charAt(i) == '/') { for (int j = i + 1; j < linkOrig.length(); j++) { newlink += linkOrig.charAt(j); } if (newlink.contains("//:ptth")) { newlink = inverteFrase(newlink); if (isValid(newlink)) { return newlink; } } else if (newlink.contains("http://")) { if (isValid(newlink)) { return newlink; } } } } } if (linkOrig.contains("protetordelink.tv")) { for (int i = linkOrig.length() - 1; i >= 0; i--) { letra = linkOrig.charAt(i); if (letra == '/') { for (int j = i + 1; j < linkOrig.length(); j++) { newlink += linkOrig.charAt(j); } newlink = HexToChar(newlink); if (newlink.contains("ptth")) { if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); newlink = inverteFrase(newlink); if (isValid(newlink)) { return newlink; } } else { newlink = inverteFrase(newlink); if (isValid(newlink)) { return newlink; } } } else { if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } } } } if (linkOrig.contains("baixeaquifilmes")) { for (int i = 0; i < linkOrig.length(); i++) { letra = linkOrig.charAt(i); if (letra == '?') { for (int j = i + 1; j < linkOrig.length(); j++) { newlink += linkOrig.charAt(j); } if (newlink.contains(":ptth")) { newlink = inverteFrase(newlink); if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } else { if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } } } } if (linkOrig.contains("downloadsgratis")) { for (int i = 0; i < linkOrig.length(); i++) { letra = linkOrig.charAt(i); if (letra == '!') { for (int j = i + 1; j < linkOrig.length(); j++) { newlink += linkOrig.charAt(j); } if (precisaRepassar(QuebraLink.decode64(newlink))) { newlink = quebraLink(QuebraLink.decode64(newlink)); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } } } newlink = ""; if (linkOrig.contains("vinxp")) { System.out.println("é"); for (int i = 1; i < linkOrig.length(); i++) { if (linkOrig.charAt(i) == '=') { for (int j = i + 1; j < linkOrig.length(); j++) { newlink += linkOrig.charAt(j); } break; } } if (newlink.contains(".vinxp")) { newlink = newlink.replace(".vinxp", ""); } newlink = decodeCifraDeCesar(newlink); System.out.println(newlink); return newlink; } if (linkOrig.contains("?")) { String linkTemporary = ""; newlink = ""; if (linkOrig.contains("go!")) { linkOrig = linkOrig.replace("?go!", "?"); } if (linkOrig.contains("=")) { for (int i = 0; i < linkOrig.length(); i++) { letra = linkOrig.charAt(i); if (letra == '=') { for (int j = i + 1; j < linkOrig.length(); j++) { newlink += linkOrig.charAt(j); } linkTemporary = QuebraLink.decode64(newlink); break; } } if (linkTemporary.contains("http")) { newlink = ""; for (int i = 0; i < linkTemporary.length(); i++) { letra = linkTemporary.charAt(i); if (letra == 'h') { for (int j = i; j < linkTemporary.length(); j++) { newlink += linkTemporary.charAt(j); } newlink = newlink.replace("!og", ""); if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } } } if (linkTemporary.contains("ptth")) { newlink = ""; linkTemporary = inverteFrase(linkTemporary); for (int i = 0; i < linkTemporary.length(); i++) { letra = linkTemporary.charAt(i); if (letra == 'h') { for (int j = i; j < linkTemporary.length(); j++) { newlink += linkTemporary.charAt(j); } newlink = newlink.replace("!og", ""); if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } } } } linkTemporary = ""; for (int i = 0; i < linkOrig.length(); i++) { letra = linkOrig.charAt(i); if (letra == '?') { for (int j = i + 1; j < linkOrig.length(); j++) { linkTemporary += linkOrig.charAt(j); } link = QuebraLink.decode64(linkTemporary); break; } } if (link.contains("http")) { newlink = ""; for (int i = 0; i < link.length(); i++) { letra = link.charAt(i); if (letra == 'h') { for (int j = i; j < link.length(); j++) { newlink += link.charAt(j); } newlink = newlink.replace("!og", ""); if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } } } if (link.contains("ptth")) { newlink = ""; linkTemporary = inverteFrase(link); for (int i = 0; i < linkTemporary.length(); i++) { letra = linkTemporary.charAt(i); if (letra == 'h') { for (int j = i; j < linkTemporary.length(); j++) { newlink += linkTemporary.charAt(j); } newlink = newlink.replace("!og", ""); if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } } } linkOrig = linkInit; link = linkOrig; newlink = ""; } if (linkOrig.contains("?")) { String linkTemporary = ""; newlink = ""; if (linkOrig.contains("go!")) { linkOrig = linkOrig.replace("?go!", "?"); } if (linkOrig.contains("=")) { for (int i = 0; i < linkOrig.length(); i++) { letra = linkOrig.charAt(i); if (letra == '=') { for (int j = i + 1; j < linkOrig.length(); j++) { newlink += linkOrig.charAt(j); } linkTemporary = linkTemporary.replace(".", ""); try { linkTemporary = HexToChar(newlink); } catch (Exception e) { System.err.println("erro hex 1º"); estado = true; } break; } } if (linkTemporary.contains("http") && !estado) { newlink = ""; for (int i = 0; i < linkTemporary.length(); i++) { letra = linkTemporary.charAt(i); if (letra == 'h') { for (int j = i; j < linkTemporary.length(); j++) { newlink += linkTemporary.charAt(j); } newlink = newlink.replace("!og", ""); if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } } } if (linkTemporary.contains("ptth") && !estado) { newlink = ""; linkTemporary = inverteFrase(linkTemporary); for (int i = 0; i < linkTemporary.length(); i++) { letra = linkTemporary.charAt(i); if (letra == 'h') { for (int j = i; j < linkTemporary.length(); j++) { newlink += linkTemporary.charAt(j); } newlink = newlink.replace("!og", ""); if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } } } } estado = false; linkTemporary = ""; for (int i = 0; i < linkOrig.length(); i++) { letra = linkOrig.charAt(i); if (letra == '?') { for (int j = i + 1; j < linkOrig.length(); j++) { linkTemporary += linkOrig.charAt(j); } linkTemporary = linkTemporary.replace(".", ""); try { link = HexToChar(linkTemporary); } catch (Exception e) { System.err.println("erro hex 2º"); estado = true; } break; } } if (link.contains("http") && !estado) { newlink = ""; for (int i = 0; i < link.length(); i++) { letra = link.charAt(i); if (letra == 'h') { for (int j = i; j < link.length(); j++) { newlink += link.charAt(j); } newlink = newlink.replace("!og", ""); if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } } } if (link.contains("ptth") && !estado) { newlink = ""; linkTemporary = inverteFrase(link); for (int i = 0; i < linkTemporary.length(); i++) { letra = linkTemporary.charAt(i); if (letra == 'h') { for (int j = i; j < linkTemporary.length(); j++) { newlink += linkTemporary.charAt(j); } newlink = newlink.replace("!og", ""); if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } } } linkOrig = linkInit; link = linkOrig; newlink = ""; } if (linkOrig.contains("?") && !linkOrig.contains("id=") && !linkOrig.contains("url=") && !linkOrig.contains("link=") && !linkOrig.contains("r=http") && !linkOrig.contains("r=ftp")) { for (int i = 0; i < linkOrig.length(); i++) { letra = linkOrig.charAt(i); if (letra == '?') { newlink = ""; for (int j = i + 1; j < linkOrig.length(); j++) { newlink += linkOrig.charAt(j); } if (newlink.contains("ptth")) { newlink = inverteFrase(newlink); if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } else { if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } } } } if ((link.contains("url=")) || (link.contains("link=")) || (link.contains("?r=http")) || (link.contains("?r=ftp"))) { if (!link.contains("//:ptth")) { for (int i = 0; i < link.length(); i++) { letra = link.charAt(i); if (letra == '=') { for (int j = i + 1; j < link.length(); j++) { letra = link.charAt(j); newlink += letra; } break; } } if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } } if (linkOrig.contains("//:ptth") || linkOrig.contains("//:sptth")) { if (linkOrig.contains("=")) { for (int i = 0; i < linkOrig.length(); i++) { letra = linkOrig.charAt(i); if (letra == '=') { for (int j = linkOrig.length() - 1; j > i; j--) { letra = linkOrig.charAt(j); newlink += letra; } break; } } if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } newlink = inverteFrase(linkOrig); if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } if (linkOrig.contains("?go!")) { linkOrig = linkOrig.replace("?go!", "?down!"); newlink = linkOrig; if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } if (linkOrig.contains("down!")) { linkOrig = linkOrig.replace("down!", ""); return quebraLink(linkOrig); } newlink = ""; for (int i = linkOrig.length() - 4; i >= 0; i--) { letra = linkOrig.charAt(i); if (letra == '=') { for (int j = i + 1; j < linkOrig.length(); j++) { newlink += linkOrig.charAt(j); } break; } } String ltmp = ""; try { ltmp = HexToChar(newlink); } catch (Exception e) { System.err.println("erro hex 3º"); } if (ltmp.contains("http://")) { if (precisaRepassar(ltmp)) { ltmp = quebraLink(ltmp); if (isValid(ltmp)) { newlink = ltmp; return newlink; } } else { if (isValid(ltmp)) { newlink = ltmp; return newlink; } } } else if (ltmp.contains("//:ptth")) { ltmp = inverteFrase(ltmp); if (precisaRepassar(ltmp)) { ltmp = quebraLink(ltmp); if (isValid(ltmp)) { newlink = ltmp; return newlink; } } else { if (isValid(ltmp)) { newlink = ltmp; return newlink; } } } else { ltmp = newlink; } ltmp = decode64(newlink); if (ltmp.contains("http://")) { if (precisaRepassar(ltmp)) { ltmp = quebraLink(newlink); if (isValid(ltmp)) { newlink = ltmp; return newlink; } } else { if (isValid(ltmp)) { newlink = ltmp; return newlink; } } } else if (ltmp.contains("//:ptth")) { ltmp = inverteFrase(ltmp); if (precisaRepassar(ltmp)) { newlink = quebraLink(newlink); if (isValid(ltmp)) { newlink = ltmp; return newlink; } } else { if (isValid(ltmp)) { newlink = ltmp; return newlink; } } } else { ltmp = newlink; } try { ltmp = decodeAscii(newlink); } catch (NumberFormatException e) { System.err.println("erro ascii"); } if (ltmp.contains("http://")) { if (precisaRepassar(ltmp)) { ltmp = quebraLink(newlink); if (isValid(ltmp)) { newlink = ltmp; return newlink; } } else { if (isValid(ltmp)) { newlink = ltmp; return newlink; } } } else if (ltmp.contains("//:ptth")) { ltmp = inverteFrase(ltmp); if (precisaRepassar(ltmp)) { ltmp = quebraLink(ltmp); if (isValid(ltmp)) { newlink = ltmp; return newlink; } } else { if (isValid(ltmp)) { newlink = ltmp; return newlink; } } } else { ltmp = null; } newlink = ""; int cont = 0; letra = '\0'; ltmp = ""; newlink = ""; for (int i = linkOrig.length() - 4; i >= 0; i--) { letra = linkOrig.charAt(i); if (letra == '=' || letra == '?') { for (int j = i + 1; j < linkOrig.length(); j++) { if (linkOrig.charAt(j) == '.') { break; } newlink += linkOrig.charAt(j); } break; } } ltmp = newlink; String tmp = ""; String tmp2 = ""; do { try { tmp = HexToChar(ltmp); tmp2 = HexToChar(inverteFrase(ltmp)); if (!tmp.isEmpty() && tmp.length() > 5 && !tmp.contains("") && !tmp.contains("§") && !tmp.contains("�") && !tmp.contains("")) { ltmp = HexToChar(ltmp); } else if (!inverteFrase(tmp2).isEmpty() && inverteFrase(tmp2).length() > 5 && !inverteFrase(tmp2).contains("") && !inverteFrase(tmp2).contains("§") && !inverteFrase(tmp2).contains("�")) { ltmp = HexToChar(inverteFrase(ltmp)); } } catch (NumberFormatException e) { } tmp = decode64(ltmp); tmp2 = decode64(inverteFrase(ltmp)); if (!tmp.contains("�") && !tmp.contains("ޚ")) { ltmp = decode64(ltmp); } else if (!tmp2.contains("�") && !tmp2.contains("ޚ")) { ltmp = decode64(inverteFrase(ltmp)); } try { tmp = decodeAscii(ltmp); tmp2 = decodeAscii(inverteFrase(ltmp)); if (!tmp.contains("") && !tmp.contains("�") && !tmp.contains("§") && !tmp.contains("½") && !tmp.contains("*") && !tmp.contains("\"") && !tmp.contains("^")) { ltmp = decodeAscii(ltmp); } else if (!tmp2.contains("") && !tmp2.contains("�") && !tmp2.contains("§") && !tmp2.contains("½") && !tmp2.contains("*") && !tmp2.contains("\"") && !tmp2.contains("^")) { ltmp = decodeAscii(inverteFrase(ltmp)); } } catch (NumberFormatException e) { } cont++; if (ltmp.contains("http")) { newlink = ltmp; if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } else if (ltmp.contains("ptth")) { newlink = inverteFrase(ltmp); if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } } while (!isValid(newlink) && cont <= 20); tmp = null; tmp2 = null; ltmp = null; String leitura = ""; try { leitura = readHTML(linkInit); } catch (IOException e) { } leitura = leitura.toLowerCase(); if (leitura.contains("trocabotao")) { newlink = ""; for (int i = leitura.indexOf("trocabotao"); i < leitura.length(); i++) { if (Character.isDigit(leitura.charAt(i))) { int tmpInt = i; while (Character.isDigit(leitura.charAt(tmpInt))) { newlink += leitura.charAt(tmpInt); tmpInt++; } cod = Integer.parseInt(newlink); break; } } if (cod != 0) { for (int i = 7; i < linkInit.length(); i++) { letra = linkInit.charAt(i); if (letra == '/') { newlink = linkInit.substring(0, i + 1) + "linkdiscover.php?cod=" + cod; break; } } DataInputStream dat = null; try { URL url = new URL(newlink); InputStream in = url.openStream(); dat = new DataInputStream(new BufferedInputStream(in)); leitura = ""; int dado; while ((dado = dat.read()) != -1) { letra = (char) dado; leitura += letra; } newlink = leitura.replaceAll(" ", ""); if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } catch (MalformedURLException ex) { System.out.println("URL mal formada."); } catch (IOException e) { } finally { try { if (dat != null) { dat.close(); } } catch (IOException e) { System.err.println("Falha ao fechar fluxo."); } } } } if (precisaRepassar(linkInit)) { if (linkInit.substring(8).contains("http")) { newlink = linkInit.substring(linkInit.indexOf("http", 8), linkInit.length()); if (isValid(newlink)) { return newlink; } } } newlink = ""; StringBuffer strBuf = null; try { strBuf = new StringBuffer(readHTML(linkInit)); for (String tmp3 : getLibrary()) { if (strBuf.toString().toLowerCase().contains(tmp3)) { for (int i = strBuf.toString().indexOf(tmp3); i >= 0; i--) { if (strBuf.toString().charAt(i) == '"') { for (int j = i + 1; j < strBuf.length(); j++) { if (strBuf.toString().charAt(j) == '"') { if (precisaRepassar(newlink)) { newlink = quebraLink(newlink); if (isValid(newlink)) { return newlink; } } else { if (isValid(newlink)) { return newlink; } } } else { newlink += strBuf.toString().charAt(j); } } } } } } } catch (IOException ex) { } GUIQuebraLink.isBroken = false; return "Desculpe o link não pode ser quebrado."; } | private void copyJdbcDriverToWL(final WLPropertyPage page) { final File url = new File(page.getDomainDirectory()); final File lib = new File(url, "lib"); final File mysqlLibrary = new File(lib, NexOpenUIActivator.getDefault().getMySQLDriver()); if (!mysqlLibrary.exists()) { InputStream driver = null; FileOutputStream fos = null; try { driver = AppServerPropertyPage.toInputStream(new Path("jdbc/" + NexOpenUIActivator.getDefault().getMySQLDriver())); fos = new FileOutputStream(mysqlLibrary); IOUtils.copy(driver, fos); } catch (final IOException e) { Logger.log(Logger.ERROR, "Could not copy the MySQL Driver jar file to Bea WL", e); final Status status = new Status(Status.ERROR, NexOpenUIActivator.PLUGIN_ID, Status.ERROR, "Could not copy the MySQL Driver jar file to Bea WL", e); ErrorDialog.openError(page.getShell(), "Bea WebLogic MSQL support", "Could not copy the MySQL Driver jar file to Bea WL", status); } finally { try { if (driver != null) { driver.close(); driver = null; } if (fos != null) { fos.flush(); fos.close(); fos = null; } } catch (IOException e) { } } } } | 18,553 |
1 | private void copyResource(final String resourceName, final File file) throws IOException { assertTrue(resourceName.startsWith("/")); InputStream in = null; boolean suppressExceptionOnClose = true; try { in = this.getClass().getResourceAsStream(resourceName); assertNotNull("Resource '" + resourceName + "' not found.", in); OutputStream out = null; try { out = new FileOutputStream(file); IOUtils.copy(in, out); suppressExceptionOnClose = false; } finally { try { if (out != null) { out.close(); } } catch (final IOException e) { if (!suppressExceptionOnClose) { throw e; } } } } finally { try { if (in != null) { in.close(); } } catch (final IOException e) { if (!suppressExceptionOnClose) { throw e; } } } } | public void update() { if (!updatable) { Main.fenetre().erreur(Fenetre.OLD_VERSION); return; } try { Main.fenetre().update(); Element remoteRoot = new SAXBuilder().build(xml).getRootElement(); addPackages = new HashMap<Integer, PackageVersion>(); Iterator<?> iterElem = remoteRoot.getChildren().iterator(); while (iterElem.hasNext()) { PackageVersion pack = new PackageVersion((Element) iterElem.next()); addPackages.put(pack.id(), pack); } removePackages = new HashMap<Integer, PackageVersion>(); iterElem = root.getChildren("package").iterator(); while (iterElem.hasNext()) { PackageVersion pack = new PackageVersion((Element) iterElem.next()); int id = pack.id(); if (!addPackages.containsKey(id)) { removePackages.put(id, pack); } else if (addPackages.get(id).version().equals(pack.version())) { addPackages.remove(id); } else { addPackages.get(id).ecrase(); } } Iterator<PackageVersion> iterPack = addPackages.values().iterator(); while (iterPack.hasNext()) { install(iterPack.next()); } iterPack = removePackages.values().iterator(); while (iterPack.hasNext()) { remove(iterPack.next()); } if (offline) { Runtime.getRuntime().addShutdownHook(new AddPackage(xml, "versions.xml")); Main.fenetre().erreur(Fenetre.UPDATE_TERMINE_RESTART); } else { File oldXML = new File("versions.xml"); oldXML.delete(); oldXML.createNewFile(); FileChannel out = new FileOutputStream(oldXML).getChannel(); FileChannel in = new FileInputStream(xml).getChannel(); in.transferTo(0, in.size(), out); in.close(); out.close(); xml.delete(); if (restart) { Main.fenetre().erreur(Fenetre.UPDATE_TERMINE_RESTART); } else { Main.updateVersion(); } } } catch (Exception e) { Main.fenetre().erreur(Fenetre.ERREUR_UPDATE, e); } } | 18,554 |
1 | private String MD5Sum(String input) { String hashtext = null; try { MessageDigest md = MessageDigest.getInstance("MD5"); md.reset(); md.update(input.getBytes()); byte[] digest = md.digest(); BigInteger bigInt = new BigInteger(1, digest); hashtext = bigInt.toString(16); while (hashtext.length() < 32) { hashtext = "0" + hashtext; } } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } return hashtext; } | private String calculateCredential(Account account) { MessageDigest md5 = null; try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { return null; } try { md5.update(account.getUsername().getBytes("UTF-8")); md5.update(account.getCryptPassword().getBytes("UTF-8")); md5.update(String.valueOf(account.getObjectId()).getBytes("UTF-8")); md5.update(account.getUid().getBytes("UTF-8")); byte[] digest = md5.digest(); return TextUtils.calculateMD5(digest); } catch (UnsupportedEncodingException e) { return null; } } | 18,555 |
0 | private void getRandomGUID(boolean secure) { MessageDigest md5 = null; StringBuffer sbValueBeforeMD5 = new StringBuffer(); try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { System.out.println("Error: " + e); } try { long time = System.currentTimeMillis(); long rand = 0L; if (secure) rand = mySecureRand.nextLong(); else rand = myRand.nextLong(); sbValueBeforeMD5.append(s_id); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(time)); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(rand)); valueBeforeMD5 = sbValueBeforeMD5.toString(); md5.update(valueBeforeMD5.getBytes()); byte array[] = md5.digest(); StringBuffer sb = new StringBuffer(); for (int j = 0; j < array.length; j++) { int b = array[j] & 0xff; if (b < 16) sb.append('0'); sb.append(Integer.toHexString(b)); } valueAfterMD5 = sb.toString(); } catch (Exception e) { System.out.println("Error:" + e); } } | private void runUpdate(String sql, boolean transactional) { log().info("Vacuumd executing statement: " + sql); Connection dbConn = null; boolean commitRequired = false; boolean autoCommitFlag = !transactional; try { dbConn = getDataSourceFactory().getConnection(); dbConn.setAutoCommit(autoCommitFlag); PreparedStatement stmt = dbConn.prepareStatement(sql); int count = stmt.executeUpdate(); stmt.close(); if (log().isDebugEnabled()) { log().debug("Vacuumd: Ran update " + sql + ": this affected " + count + " rows"); } commitRequired = transactional; } catch (SQLException ex) { log().error("Vacuumd: Database error execuating statement " + sql, ex); } finally { if (dbConn != null) { try { if (commitRequired) { dbConn.commit(); } else if (transactional) { dbConn.rollback(); } } catch (SQLException ex) { } finally { if (dbConn != null) { try { dbConn.close(); } catch (Exception e) { } } } } } } | 18,556 |
0 | @Override public boolean checkConnection() { int status = 0; try { URL url = new URL(TupeloProxy.endpoint); HttpURLConnection conn = (HttpURLConnection) url.openConnection(); status = conn.getResponseCode(); } catch (Exception e) { logger.severe("Connection test failed with code:" + status); e.printStackTrace(); } return status > 199 && status < 400; } | private void appendAndDelete(FileOutputStream outstream, String file) throws FileNotFoundException, IOException { FileInputStream input = new FileInputStream(file); byte[] buffer = new byte[65536]; int l; while ((l = input.read(buffer)) != -1) outstream.write(buffer, 0, l); input.close(); new File(file).delete(); } | 18,557 |
1 | public void testReaderWriterUC2() throws Exception { String inFile = "test_data/mri.png"; String outFile = "test_output/mri__smooth_testReaderWriter.png"; itkImageFileReaderUC2_Pointer reader = itkImageFileReaderUC2.itkImageFileReaderUC2_New(); itkImageFileWriterUC2_Pointer writer = itkImageFileWriterUC2.itkImageFileWriterUC2_New(); reader.SetFileName(inFile); writer.SetFileName(outFile); writer.SetInput(reader.GetOutput()); writer.Update(); } | private static void main(String[] args) { try { File f = new File("test.txt"); if (f.exists()) { throw new IOException(f + " already exists. I don't want to overwrite it."); } StraightStreamReader in; char[] cbuf = new char[0x1000]; int read; int totRead; FileOutputStream out = new FileOutputStream(f); for (int i = 0x00; i < 0x100; i++) { out.write(i); } out.close(); in = new StraightStreamReader(new FileInputStream(f)); for (int i = 0x00; i < 0x100; i++) { read = in.read(); if (read != i) { System.err.println("Error: " + i + " read as " + read); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = in.read(cbuf); if (totRead != 0x100) { System.err.println("Simple buffered read did not read the full amount: 0x" + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 7)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); f.delete(); } catch (IOException x) { System.err.println(x.getMessage()); } } | 18,558 |
0 | public static synchronized void loadConfig(String configFile) { if (properties != null) { return; } URL url = null; InputStream is = null; try { String configProperty = null; try { configProperty = System.getProperty("dspace.configuration"); } catch (SecurityException se) { log.warn("Unable to access system properties, ignoring.", se); } if (loadedFile != null) { log.info("Reloading current config file: " + loadedFile.getAbsolutePath()); url = loadedFile.toURI().toURL(); } else if (configFile != null) { log.info("Loading provided config file: " + configFile); loadedFile = new File(configFile); url = loadedFile.toURI().toURL(); } else if (configProperty != null) { log.info("Loading system provided config property (-Ddspace.configuration): " + configProperty); loadedFile = new File(configProperty); url = loadedFile.toURI().toURL(); } else { url = ConfigurationManager.class.getResource("/dspace.cfg"); if (url != null) { log.info("Loading from classloader: " + url); loadedFile = new File(url.getPath()); } } if (url == null) { log.fatal("Cannot find dspace.cfg"); throw new IllegalStateException("Cannot find dspace.cfg"); } else { properties = new Properties(); moduleProps = new HashMap<String, Properties>(); is = url.openStream(); properties.load(is); for (Enumeration<?> pe = properties.propertyNames(); pe.hasMoreElements(); ) { String key = (String) pe.nextElement(); String value = interpolate(key, properties.getProperty(key), 1); if (value != null) { properties.setProperty(key, value); } } } } catch (IOException e) { log.fatal("Can't load configuration: " + url, e); throw new IllegalStateException("Cannot load configuration: " + url, e); } finally { if (is != null) { try { is.close(); } catch (IOException ioe) { } } } File licenseFile = new File(getProperty("dspace.dir") + File.separator + "config" + File.separator + "default.license"); FileInputStream fir = null; InputStreamReader ir = null; BufferedReader br = null; try { fir = new FileInputStream(licenseFile); ir = new InputStreamReader(fir, "UTF-8"); br = new BufferedReader(ir); String lineIn; license = ""; while ((lineIn = br.readLine()) != null) { license = license + lineIn + '\n'; } br.close(); } catch (IOException e) { log.fatal("Can't load license: " + licenseFile.toString(), e); throw new IllegalStateException("Cannot load license: " + licenseFile.toString(), e); } finally { if (br != null) { try { br.close(); } catch (IOException ioe) { } } if (ir != null) { try { ir.close(); } catch (IOException ioe) { } } if (fir != null) { try { fir.close(); } catch (IOException ioe) { } } } } | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 18,559 |
1 | private void saveFile(Folder folder, Object key, InputStream stream) throws FileManagerException { File file = new File(folder, key.toString()); LOGGER.debug("Writing file: " + file.getAbsolutePath()); Writer writer = null; Writer encodedWriter = null; try { encodedWriter = new OutputStreamWriter(new FileOutputStream(file), getEncodeCharset()); IOUtils.copy(stream, encodedWriter, getDecodeCharset()); LOGGER.info("saveFile(), decode charset: " + getDecodeCharset() + ", encode charset: " + getEncodeCharset()); } catch (IOException e) { throw new FileManagerException("Unable to write to file: " + file.getAbsolutePath(), e); } finally { try { encodedWriter.close(); } catch (IOException e) { throw new FileManagerException("Unable to write to file: " + file.getAbsolutePath(), e); } } } | public void createZip(File zipFileName, Vector<File> selected) { try { byte[] buffer = new byte[4096]; ZipOutputStream out = new ZipOutputStream(new BufferedOutputStream(new FileOutputStream(zipFileName), 8096)); out.setLevel(Deflater.BEST_COMPRESSION); out.setMethod(ZipOutputStream.DEFLATED); for (int i = 0; i < selected.size(); i++) { FileInputStream in = new FileInputStream(selected.get(i)); String file = selected.get(i).getPath(); if (file.indexOf("\\") != -1) file = file.substring(file.lastIndexOf(fs) + 1, file.length()); ZipEntry ze = new ZipEntry(file); out.putNextEntry(ze); int len; while ((len = in.read(buffer)) > 0) out.write(buffer, 0, len); out.closeEntry(); in.close(); selected.get(i).delete(); } out.close(); } catch (IllegalArgumentException iae) { iae.printStackTrace(); } catch (FileNotFoundException fnfe) { fnfe.printStackTrace(); } catch (IOException ioe) { ioe.printStackTrace(); } } | 18,560 |
0 | static void invalidSlave(String msg, Socket sock) throws IOException { BufferedReader _sinp = null; PrintWriter _sout = null; try { _sout = new PrintWriter(sock.getOutputStream(), true); _sinp = new BufferedReader(new InputStreamReader(sock.getInputStream())); _sout.println(msg); logger.info("NEW< " + msg); String txt = AsyncSlaveListener.readLine(_sinp, 30); String sname = ""; String spass = ""; String shash = ""; try { String[] items = txt.split(" "); sname = items[1].trim(); spass = items[2].trim(); shash = items[3].trim(); } catch (Exception e) { throw new IOException("Slave Inititalization Faailed"); } String pass = sname + spass + _pass; MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.reset(); md5.update(pass.getBytes()); String hash = AsyncSlaveListener.hash2hex(md5.digest()).toLowerCase(); if (!hash.equals(shash)) { throw new IOException("Slave Inititalization Faailed"); } } catch (Exception e) { } throw new IOException("Slave Inititalization Faailed"); } | private void saveFile(InputStream in, String fullPath) { try { File sysfile = new File(fullPath); if (!sysfile.exists()) { sysfile.createNewFile(); } java.io.OutputStream out = new FileOutputStream(sysfile); org.apache.commons.io.IOUtils.copy(in, out); out.close(); } catch (Exception e) { e.printStackTrace(); } } | 18,561 |
0 | public static String getMD5(String input) { String res = ""; try { MessageDigest algorithm = MessageDigest.getInstance("MD5"); algorithm.reset(); algorithm.update(input.getBytes("ISO8859_1")); byte[] md5 = algorithm.digest(); String tmp = ""; for (int i = 0; i < md5.length; i++) { tmp = (Integer.toHexString(0xFF & md5[i])); if (tmp.length() == 1) { res += "0" + tmp; } else { res += tmp; } } } catch (Exception ex) { } return res; } | @Override public void onCreate(Bundle savedInstanceState) { super.onCreate(savedInstanceState); setContentView(R.layout.main); final EditText eText = (EditText) findViewById(R.id.address); final Button button = (Button) findViewById(R.id.ButtonGo); button.setOnClickListener(new Button.OnClickListener() { public void onClick(View v) { try { HttpClient httpclient = new DefaultHttpClient(); HttpPost httppost = new HttpPost("https://mt0-app.cloud.cm/rpc/json"); List<NameValuePair> nameValuePairs = new ArrayList<NameValuePair>(2); nameValuePairs.add(new BasicNameValuePair("m", "login")); nameValuePairs.add(new BasicNameValuePair("c", "User")); nameValuePairs.add(new BasicNameValuePair("password", "cloudisgreat")); nameValuePairs.add(new BasicNameValuePair("alias", "cs588")); httppost.setEntity(new UrlEncodedFormEntity(nameValuePairs)); String result = ""; try { HttpResponse response = httpclient.execute(httppost); result = EntityUtils.toString(response.getEntity()); } catch (Exception e) { result = e.getMessage(); } LayoutInflater inflater = (LayoutInflater) WebTest.this.getSystemService(Context.LAYOUT_INFLATER_SERVICE); final View layout = inflater.inflate(R.layout.window1, null); final PopupWindow popup = new PopupWindowTest(layout, 100, 100); Button b = (Button) layout.findViewById(R.id.test_button); b.setOnTouchListener(new OnTouchListener() { @Override public boolean onTouch(View v, MotionEvent event) { Log.d("Debug", "Button activate"); popup.dismiss(); return false; } }); popup.showAtLocation(layout, Gravity.CENTER, 0, 0); View layout2 = inflater.inflate(R.layout.window1, null); final PopupWindow popup2 = new PopupWindowTest(layout2, 100, 100); TextView tview = (TextView) layout2.findViewById(R.id.pagetext); tview.setText(result); popup2.showAtLocation(layout, Gravity.CENTER, 50, -90); } catch (Exception e) { Log.d("Debug", e.toString()); } } }); } | 18,562 |
1 | public static void encrypt(File plain, File symKey, File ciphered, String algorithm) throws IOException, ClassNotFoundException, NoSuchAlgorithmException, NoSuchPaddingException, InvalidKeyException { Key key = null; try { ObjectInputStream in = new ObjectInputStream(new FileInputStream(symKey)); key = (Key) in.readObject(); } catch (IOException ioe) { KeyGenerator generator = KeyGenerator.getInstance(algorithm); key = generator.generateKey(); ObjectOutputStream out = new ObjectOutputStream(new java.io.FileOutputStream(symKey)); out.writeObject(key); out.close(); } Cipher cipher = Cipher.getInstance(algorithm); cipher.init(Cipher.ENCRYPT_MODE, new SecretKeySpec(key.getEncoded(), algorithm)); FileInputStream in = new FileInputStream(plain); CipherOutputStream out = new CipherOutputStream(new FileOutputStream(ciphered), cipher); byte[] buffer = new byte[4096]; for (int read = in.read(buffer); read > -1; read = in.read(buffer)) { out.write(buffer, 0, read); } out.close(); } | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 18,563 |
0 | private void copy(File source, File target) throws IOException { FileChannel in = (new FileInputStream(source)).getChannel(); FileChannel out = (new FileOutputStream(target)).getChannel(); in.transferTo(0, source.length(), out); in.close(); out.close(); } | public static String doPostWithBasicAuthentication(URL url, String username, String password, String parameters, Map<String, String> headers) throws IOException { HttpURLConnection con = (HttpURLConnection) url.openConnection(); con.setRequestMethod("POST"); con.setDoInput(true); con.setDoOutput(true); byte[] encodedPassword = (username + ":" + password).getBytes(); BASE64Encoder encoder = new BASE64Encoder(); con.setRequestProperty("Authorization", "Basic " + encoder.encode(encodedPassword)); con.setConnectTimeout(2000); con.setRequestProperty("Content-Type", "application/x-www-form-urlencoded"); if (parameters != null) con.setRequestProperty("Content-Length", "" + Integer.toString(parameters.getBytes().length)); if (headers != null) { for (Map.Entry<String, String> header : headers.entrySet()) { con.setRequestProperty(header.getKey(), header.getValue()); } } DataOutputStream wr = new DataOutputStream(con.getOutputStream()); wr.writeBytes(parameters); wr.flush(); wr.close(); InputStream is = con.getInputStream(); BufferedReader rd = new BufferedReader(new InputStreamReader(is)); String line; StringBuffer response = new StringBuffer(); while ((line = rd.readLine()) != null) { response.append(line); response.append('\n'); } rd.close(); is.close(); con.disconnect(); return response.toString(); } | 18,564 |
1 | @Override public void connect() throws Exception { if (client != null) { _logger.warn("Already connected."); return; } try { _logger.debug("About to connect to ftp server " + server + " port " + port); client = new FTPClient(); client.connect(server, port); if (!FTPReply.isPositiveCompletion(client.getReplyCode())) throw new Exception("Unable to connect to FTP server " + server + " port " + port + " got error [" + client.getReplyString() + "]"); _logger.info("Connected to ftp server " + server + " port " + port); _logger.debug(client.getReplyString()); if (!client.login(username, password)) throw new Exception("Invalid username / password combination for FTP server " + server + " port " + port); _logger.debug("Log in successful."); _logger.info("FTP server is [" + client.getSystemType() + "]"); if (passiveMode) { client.enterLocalPassiveMode(); _logger.info("Passive mode selected."); } else { client.enterLocalActiveMode(); _logger.info("Active mode selected."); } if (binaryMode) { client.setFileType(FTP.BINARY_FILE_TYPE); _logger.info("BINARY mode selected."); } else { client.setFileType(FTP.ASCII_FILE_TYPE); _logger.info("ASCII mode selected."); } if (client.changeWorkingDirectory(remoteRootDir)) { _logger.info("Changed directory to " + remoteRootDir); } else { throw new Exception("Cannot change directory to [" + remoteRootDir + "] on FTP server " + server + " port " + port); } } catch (Exception e) { _logger.error("Failed to connect to the FTP server " + server + " on port " + port, e); disconnect(); throw e; } } | public static void main(String[] args) { FTPClient client = new FTPClient(); try { client.connect("192.168.1.10"); boolean login = client.login("a", "123456"); if (login) { System.out.println("Dang nhap thanh cong..."); boolean logout = client.logout(); if (logout) { System.out.println("Da Logout khoi FTP Server..."); } } else { System.out.println("Dang nhap that bai..."); } } catch (IOException e) { e.printStackTrace(); } finally { try { client.disconnect(); } catch (IOException e) { e.printStackTrace(); } } } | 18,565 |
1 | public void render(final HttpServletRequest request, final HttpServletResponse response, final byte[] bytes, final Throwable t, final String contentType, final String encoding) throws Exception { if (contentType != null) { response.setContentType(contentType); } if (encoding != null) { response.setCharacterEncoding(encoding); } response.setContentLength(bytes.length); IOUtils.copy(new ByteArrayInputStream(bytes), response.getOutputStream()); } | public static void copy(File source, File sink) throws IOException { if (source == null) throw new NullPointerException("Source file must not be null"); if (sink == null) throw new NullPointerException("Target file must not be null"); if (!source.exists()) throw new IOException("Source file " + source.getPath() + " does not exist"); if (!source.isFile()) throw new IOException("Source file " + source.getPath() + " is not a regular file"); if (!source.canRead()) throw new IOException("Source file " + source.getPath() + " can not be read (missing acces right)"); if (!sink.exists()) throw new IOException("Target file " + sink.getPath() + " does not exist"); if (!sink.isFile()) throw new IOException("Target file " + sink.getPath() + " is not a regular file"); if (!sink.canWrite()) throw new IOException("Target file " + sink.getPath() + " is write protected"); InputStream input = null; OutputStream output = null; try { input = new FileInputStream(source); output = new FileOutputStream(sink); byte[] buffer = new byte[1024]; while (input.available() > 0) { int bread = input.read(buffer); if (bread > 0) output.write(buffer, 0, bread); } } finally { if (input != null) try { input.close(); } catch (IOException x) { } if (output != null) try { output.close(); } catch (IOException x) { } } } | 18,566 |
1 | public static void main(String[] args) throws IOException { FileChannel fc = new FileOutputStream("src/com/aaron/nio/data.txt").getChannel(); fc.write(ByteBuffer.wrap("dfsdf ".getBytes())); fc.close(); fc = new RandomAccessFile("src/com/aaron/nio/data.txt", "rw").getChannel(); fc.position(fc.size()); fc.write(ByteBuffer.wrap("中文的 ".getBytes())); fc.close(); fc = new FileInputStream("src/com/aaron/nio/data.txt").getChannel(); ByteBuffer buff = ByteBuffer.allocate(1024); fc.read(buff); buff.flip(); while (buff.hasRemaining()) { System.out.print(buff.getChar()); } fc.close(); } | private BinaryDocument documentFor(String code, String type, int diagramIndex) { code = code.replaceAll("\n", "").replaceAll("\t", "").trim().replaceAll(" ", "%20"); StringBuilder builder = new StringBuilder("http://yuml.me/diagram/"); builder.append(type).append("/"); builder.append(code); URL url; try { url = new URL(builder.toString()); String name = "uml" + diagramIndex + ".png"; diagramIndex++; BinaryDocument pic = new BinaryDocument(name, "image/png"); IOUtils.copy(url.openStream(), pic.getContent().getOutputStream()); return pic; } catch (MalformedURLException e) { throw ManagedIOException.manage(e); } catch (IOException e) { throw ManagedIOException.manage(e); } } | 18,567 |
0 | public static String encode(String username, String password) { try { MessageDigest digest = MessageDigest.getInstance("SHA-1"); digest.update(username.getBytes()); digest.update(password.getBytes()); return new String(digest.digest()); } catch (Exception e) { Log.error("Error encrypting credentials", e); } return null; } | public void load(String fileName) { BufferedReader bufReader; loaded = false; vector.removeAllElements(); try { if (fileName.startsWith("http:")) { URL url = new URL(fileName); bufReader = new BufferedReader(new InputStreamReader(url.openStream())); } else bufReader = new BufferedReader(new FileReader(fileName)); String inputLine; while ((inputLine = bufReader.readLine()) != null) { if (listener != null) listener.handleLine(inputLine); else vector.add(inputLine); } bufReader.close(); loaded = true; } catch (IOException e) { errorMsg = e.getMessage(); } } | 18,568 |
0 | @SuppressWarnings("static-access") public void run() { valuesRow = new String[this.getMaxCounter()]; for (int i = 0; i < this.getMaxCounter(); i++) { InputStream is = null; try { String surl = "http://download.finance.yahoo.com/d/quotes.csv?s=^GDAXI&f=sl1d1t1c1ohgv&e=.csv"; URL url = new URL(surl); is = url.openStream(); BufferedReader dis = new BufferedReader(new InputStreamReader(is)); String s = dis.readLine(); System.out.println(s); valuesRow[i] = s; is.close(); } catch (MalformedURLException mue) { System.out.println("Ouch - a MalformedURLException happened."); mue.printStackTrace(); System.exit(1); } catch (IOException ioe) { System.out.println("Oops- an IOException happened."); ioe.printStackTrace(); System.exit(1); } try { Thread.currentThread().sleep(this.getTsleep()); } catch (InterruptedException e) { } } System.out.println("valuesRow.length=" + valuesRow.length); } | private final Node openConnection(String connection) throws JTweetException { try { URL url = new URL(connection); HttpURLConnection conn = (HttpURLConnection) url.openConnection(); conn.connect(); BufferedInputStream reader = new BufferedInputStream(conn.getInputStream()); if (builder == null) { builder = factory.newDocumentBuilder(); } document = builder.parse(reader); reader.close(); conn.disconnect(); } catch (Exception e) { throw new JTweetException(e); } return document.getFirstChild(); } | 18,569 |
0 | public Component loadComponent(URI uri, URI origuri) throws ComponentException { try { Component comp = null; InputStream is = null; java.net.URL url = null; try { url = uri.getJavaURL(); } catch (java.net.MalformedURLException e) { throw new ComponentException("Invalid URL " + uri + " for component " + origuri + ":\n " + e.getMessage()); } try { if (url.getProtocol().equals("ftp")) is = ftpHandler.getInputStream(url); else { java.net.URLConnection conn = url.openConnection(); conn.connect(); is = conn.getInputStream(); } } catch (IOException e) { if (is != null) is.close(); throw new ComponentException("IO error loading URL " + url + " for component " + origuri + ":\n " + e.getMessage()); } try { comp = componentIO.loadComponent(origuri, uri, is, isSavable(uri)); } catch (ComponentException e) { if (is != null) is.close(); throw new ComponentException("Error loading component " + origuri + " from " + url + ":\n " + e.getMessage()); } is.close(); return comp; } catch (IOException ioe) { Tracer.debug("didn't manage to close inputstream...."); return null; } } | private List<String> getSignatureResourceNames(URL url) throws IOException, ParserConfigurationException, SAXException, TransformerException, JAXBException { List<String> signatureResourceNames = new LinkedList<String>(); ZipArchiveInputStream zipInputStream = new ZipArchiveInputStream(url.openStream(), "UTF8", true, true); ZipArchiveEntry zipEntry; while (null != (zipEntry = zipInputStream.getNextZipEntry())) { if ("_rels/.rels".equals(zipEntry.getName())) { break; } } if (null == zipEntry) { LOG.debug("no _rels/.rels relationship part present"); return signatureResourceNames; } String dsOriginPart = null; JAXBElement<CTRelationships> packageRelationshipsElement = (JAXBElement<CTRelationships>) this.relationshipsUnmarshaller.unmarshal(zipInputStream); CTRelationships packageRelationships = packageRelationshipsElement.getValue(); List<CTRelationship> packageRelationshipList = packageRelationships.getRelationship(); for (CTRelationship packageRelationship : packageRelationshipList) { if (OOXMLSignatureVerifier.DIGITAL_SIGNATURE_ORIGIN_REL_TYPE.equals(packageRelationship.getType())) { dsOriginPart = packageRelationship.getTarget(); break; } } if (null == dsOriginPart) { LOG.debug("no Digital Signature Origin part present"); return signatureResourceNames; } LOG.debug("Digital Signature Origin part: " + dsOriginPart); String dsOriginName = dsOriginPart.substring(dsOriginPart.lastIndexOf("/") + 1); LOG.debug("Digital Signature Origin base: " + dsOriginName); String dsOriginSegment = dsOriginPart.substring(0, dsOriginPart.lastIndexOf("/")) + "/"; LOG.debug("Digital Signature Origin segment: " + dsOriginSegment); String dsOriginRels = dsOriginSegment + "_rels/" + dsOriginName + ".rels"; LOG.debug("Digital Signature Origin relationship part: " + dsOriginRels); if (dsOriginRels.startsWith("/")) { dsOriginRels = dsOriginRels.substring(1); } zipInputStream = new ZipArchiveInputStream(url.openStream(), "UTF8", true, true); while (null != (zipEntry = zipInputStream.getNextZipEntry())) { if (dsOriginRels.equals(zipEntry.getName())) { break; } } if (null == zipEntry) { LOG.debug("no Digital Signature Origin relationship part present"); return signatureResourceNames; } JAXBElement<CTRelationships> dsoRelationshipsElement = (JAXBElement<CTRelationships>) this.relationshipsUnmarshaller.unmarshal(zipInputStream); CTRelationships dsoRelationships = dsoRelationshipsElement.getValue(); List<CTRelationship> dsoRelationshipList = dsoRelationships.getRelationship(); for (CTRelationship dsoRelationship : dsoRelationshipList) { if (OOXMLSignatureVerifier.DIGITAL_SIGNATURE_REL_TYPE.equals(dsoRelationship.getType())) { String signatureResourceName; if (dsoRelationship.getTarget().startsWith("/")) { signatureResourceName = dsoRelationship.getTarget(); } else { signatureResourceName = dsOriginSegment + dsoRelationship.getTarget(); } if (signatureResourceName.startsWith("/")) { signatureResourceName = signatureResourceName.substring(1); } LOG.debug("signature resource name: " + signatureResourceName); signatureResourceNames.add(signatureResourceName); } } return signatureResourceNames; } | 18,570 |
0 | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | public void actionPerformed(ActionEvent e) { String digest = null; try { MessageDigest m = MessageDigest.getInstance("sha1"); m.reset(); String pw = String.copyValueOf(this.login.getPassword()); m.update(pw.getBytes()); byte[] digestByte = m.digest(); BigInteger bi = new BigInteger(digestByte); digest = bi.toString(); System.out.println(digest); } catch (NoSuchAlgorithmException e1) { e1.printStackTrace(); } this.model.login(this.login.getHost(), this.login.getPort(), this.login.getUser(), digest); } | 18,571 |
0 | public static void copyFile(File sourceFile, String toDir, boolean create, boolean overwrite) throws FileNotFoundException, IOException { FileInputStream source = null; FileOutputStream destination = null; byte[] buffer; int bytes_read; File toFile = new File(toDir); if (create && !toFile.exists()) toFile.mkdirs(); if (toFile.exists()) { File destFile = new File(toDir + "/" + sourceFile.getName()); try { if (!destFile.exists() || overwrite) { source = new FileInputStream(sourceFile); destination = new FileOutputStream(destFile); buffer = new byte[1024]; while (true) { bytes_read = source.read(buffer); if (bytes_read == -1) break; destination.write(buffer, 0, bytes_read); } } } catch (Exception exx) { exx.printStackTrace(); } finally { if (source != null) try { source.close(); } catch (IOException e) { } if (destination != null) try { destination.close(); } catch (IOException e) { } } } } | private static void initialize() throws IOException { System.out.println("Getting startup cookies from localhostr.com"); HttpGet httpget = new HttpGet("http://localhostr.com/"); if (login) { httpget.setHeader("Cookie", sessioncookie); } HttpResponse myresponse = httpclient.execute(httpget); HttpEntity myresEntity = myresponse.getEntity(); localhostrurl = EntityUtils.toString(myresEntity); localhostrurl = parseResponse(localhostrurl, "url : '", "'"); System.out.println("Localhost url : " + localhostrurl); InputStream is = myresponse.getEntity().getContent(); is.close(); } | 18,572 |
1 | private JButton getButtonImagen() { if (buttonImagen == null) { buttonImagen = new JButton(); buttonImagen.setText("Cargar Imagen"); buttonImagen.setIcon(new ImageIcon(getClass().getResource("/data/icons/view_sidetree.png"))); buttonImagen.addActionListener(new java.awt.event.ActionListener() { public void actionPerformed(java.awt.event.ActionEvent e) { JFileChooser fc = new JFileChooser(); fc.addChoosableFileFilter(new ImageFilter()); fc.setFileView(new ImageFileView()); fc.setAccessory(new ImagePreview(fc)); int returnVal = fc.showDialog(Resorces.this, "Seleccione una imagen"); if (returnVal == JFileChooser.APPROVE_OPTION) { File file = fc.getSelectedFile(); String rutaGlobal = System.getProperty("user.dir") + file.separator + "data" + file.separator + "imagenes" + file.separator + file.getName(); String rutaRelativa = "data" + file.separator + "imagenes" + file.separator + file.getName(); try { FileInputStream fis = new FileInputStream(file); FileOutputStream fos = new FileOutputStream(rutaGlobal, true); FileChannel canalFuente = fis.getChannel(); FileChannel canalDestino = fos.getChannel(); canalFuente.transferTo(0, canalFuente.size(), canalDestino); fis.close(); fos.close(); } catch (IOException ex) { ex.printStackTrace(); } imagen.setImagenURL(rutaRelativa); System.out.println(rutaGlobal + " " + rutaRelativa); buttonImagen.setIcon(new ImageIcon(getClass().getResource("/data/icons/view_sidetreeOK.png"))); labelImagenPreview.setIcon(gui.procesadorDatos.escalaImageIcon(imagen.getImagenURL())); } else { } } }); } return buttonImagen; } | public void loadXML(URL flux, int status, File file) { try { SAXBuilder sbx = new SAXBuilder(); try { if (file.exists()) { file.delete(); } if (!file.exists()) { URLConnection conn = flux.openConnection(); conn.setConnectTimeout(5000); conn.setReadTimeout(10000); InputStream is = conn.getInputStream(); OutputStream out = new FileOutputStream(file); byte buf[] = new byte[1024]; int len; while ((len = is.read(buf)) > 0) out.write(buf, 0, len); out.close(); is.close(); } } catch (Exception e) { Log.e(Constants.PROJECT_TAG, "Exeption retrieving XML", e); } try { document = sbx.build(new FileInputStream(file)); } catch (Exception e) { Log.e(Constants.PROJECT_TAG, "xml error ", e); } } catch (Exception e) { Log.e(Constants.PROJECT_TAG, "TsukiQueryError", e); } if (document != null) { root = document.getRootElement(); PopulateDatabase(root, status); } } | 18,573 |
0 | public static void unzip(File sourceZipFile, File unzipDestinationDirectory, FileFilter filter) throws IOException { unzipDestinationDirectory.mkdirs(); if (!unzipDestinationDirectory.exists()) { throw new IOException("Unable to create destination directory: " + unzipDestinationDirectory); } ZipFile zipFile; zipFile = new ZipFile(sourceZipFile, ZipFile.OPEN_READ); Enumeration<? extends ZipEntry> zipFileEntries = zipFile.entries(); while (zipFileEntries.hasMoreElements()) { ZipEntry entry = (ZipEntry) zipFileEntries.nextElement(); if (!entry.isDirectory()) { String currentEntry = entry.getName(); File destFile = new File(unzipDestinationDirectory, currentEntry); if (filter == null || filter.accept(destFile)) { File destinationParent = destFile.getParentFile(); destinationParent.mkdirs(); BufferedInputStream is = new BufferedInputStream(zipFile.getInputStream(entry)); FileOutputStream fos = new FileOutputStream(destFile); IOUtils.copyLarge(is, fos); fos.flush(); IOUtils.closeQuietly(fos); } } } zipFile.close(); } | public RobotList<Resource> sort_decr_Resource(RobotList<Resource> list, String field) { int length = list.size(); Index_value[] resource_dist = new Index_value[length]; if (field.equals("") || field.equals("location")) { Location cur_loc = this.getLocation(); for (int i = 0; i < length; i++) { resource_dist[i] = new Index_value(i, distance(cur_loc, list.get(i).location)); } } else if (field.equals("energy")) { for (int i = 0; i < length; i++) { resource_dist[i] = new Index_value(i, list.get(i).energy); } } else if (field.equals("ammostash")) { for (int i = 0; i < length; i++) { resource_dist[i] = new Index_value(i, list.get(i).ammostash); } } else if (field.equals("speed")) { for (int i = 0; i < length; i++) { resource_dist[i] = new Index_value(i, list.get(i).speed); } } else if (field.equals("health")) { for (int i = 0; i < length; i++) { resource_dist[i] = new Index_value(i, list.get(i).health); } } else { say("impossible to sort list - nothing modified"); return list; } boolean permut; do { permut = false; for (int i = 0; i < length - 1; i++) { if (resource_dist[i].value < resource_dist[i + 1].value) { Index_value a = resource_dist[i]; resource_dist[i] = resource_dist[i + 1]; resource_dist[i + 1] = a; permut = true; } } } while (permut); RobotList<Resource> new_resource_list = new RobotList<Resource>(Resource.class); for (int i = 0; i < length; i++) { new_resource_list.addLast(list.get(resource_dist[i].index)); } return new_resource_list; } | 18,574 |
0 | private void announce(String trackerURL, byte[] hash, byte[] peerId, int port) { try { String strUrl = trackerURL + "?info_hash=" + URLEncoder.encode(new String(hash, Constants.BYTE_ENCODING), Constants.BYTE_ENCODING).replaceAll("\\+", "%20") + "&peer_id=" + URLEncoder.encode(new String(peerId, Constants.BYTE_ENCODING), Constants.BYTE_ENCODING).replaceAll("\\+", "%20") + "&port=" + port + "&uploaded=0&downloaded=0&left=0&numwant=50&no_peer_id=1&compact=1"; URL url = new URL(strUrl); URLConnection con = url.openConnection(); con.connect(); con.getContent(); } catch (Exception e) { e.printStackTrace(); } } | public synchronized void readConfiguration() throws IOException, SecurityException { String path; InputStream inputStream; path = System.getProperty("java.util.logging.config.file"); if ((path == null) || (path.length() == 0)) { String url = (System.getProperty("gnu.classpath.home.url") + "/logging.properties"); inputStream = new URL(url).openStream(); } else inputStream = new java.io.FileInputStream(path); try { readConfiguration(inputStream); } finally { inputStream.close(); } } | 18,575 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public void writeTo(OutputStream out) throws IOException { if (!closed) { throw new IOException("Stream not closed"); } if (isInMemory()) { memoryOutputStream.writeTo(out); } else { FileInputStream fis = new FileInputStream(outputFile); try { IOUtils.copy(fis, out); } finally { IOUtils.closeQuietly(fis); } } } | 18,576 |
1 | @Override public User updateUser(User bean) throws SitoolsException { checkUser(); Connection cx = null; try { cx = ds.getConnection(); cx.setAutoCommit(false); PreparedStatement st; int i = 1; if (bean.getSecret() != null && !"".equals(bean.getSecret())) { st = cx.prepareStatement(jdbcStoreResource.UPDATE_USER_WITH_PW); st.setString(i++, bean.getFirstName()); st.setString(i++, bean.getLastName()); st.setString(i++, bean.getSecret()); st.setString(i++, bean.getEmail()); st.setString(i++, bean.getIdentifier()); } else { st = cx.prepareStatement(jdbcStoreResource.UPDATE_USER_WITHOUT_PW); st.setString(i++, bean.getFirstName()); st.setString(i++, bean.getLastName()); st.setString(i++, bean.getEmail()); st.setString(i++, bean.getIdentifier()); } st.executeUpdate(); st.close(); if (bean.getProperties() != null) { deleteProperties(bean.getIdentifier(), cx); createProperties(bean, cx); } if (!cx.getAutoCommit()) { cx.commit(); } } catch (SQLException e) { try { cx.rollback(); } catch (SQLException e1) { throw new SitoolsException("UPDATE_USER ROLLBACK" + e1.getMessage(), e1); } throw new SitoolsException("UPDATE_USER " + e.getMessage(), e); } finally { closeConnection(cx); } return getUserById(bean.getIdentifier()); } | public void processSaveCompany(Company companyBean, AuthSession authSession) { if (authSession == null) { return; } DatabaseAdapter dbDyn = null; PreparedStatement ps = null; try { dbDyn = DatabaseAdapter.getInstance(); String sql = "UPDATE WM_LIST_COMPANY " + "SET " + " full_name = ?, " + " short_name = ?, " + " address = ?, " + " telefon_buh = ?, " + " telefon_chief = ?, " + " chief = ?, " + " buh = ?, " + " fax = ?, " + " email = ?, " + " icq = ?, " + " short_client_info = ?, " + " url = ?, " + " short_info = ? " + "WHERE ID_FIRM = ? and ID_FIRM in "; switch(dbDyn.getFamaly()) { case DatabaseManager.MYSQL_FAMALY: String idList = authSession.getGrantedCompanyId(); sql += " (" + idList + ") "; break; default: sql += "(select z1.ID_FIRM from v$_read_list_firm z1 where z1.user_login = ?)"; break; } ps = dbDyn.prepareStatement(sql); int num = 1; ps.setString(num++, companyBean.getName()); ps.setString(num++, companyBean.getShortName()); ps.setString(num++, companyBean.getAddress()); ps.setString(num++, ""); ps.setString(num++, ""); ps.setString(num++, companyBean.getCeo()); ps.setString(num++, companyBean.getCfo()); ps.setString(num++, ""); ps.setString(num++, ""); RsetTools.setLong(ps, num++, null); ps.setString(num++, ""); ps.setString(num++, companyBean.getWebsite()); ps.setString(num++, companyBean.getInfo()); RsetTools.setLong(ps, num++, companyBean.getId()); switch(dbDyn.getFamaly()) { case DatabaseManager.MYSQL_FAMALY: break; default: ps.setString(num++, authSession.getUserLogin()); break; } int i1 = ps.executeUpdate(); if (log.isDebugEnabled()) log.debug("Count of updated record - " + i1); dbDyn.commit(); } catch (Exception e) { try { if (dbDyn != null) dbDyn.rollback(); } catch (Exception e001) { } String es = "Error save company"; log.error(es, e); throw new IllegalStateException(es, e); } finally { DatabaseManager.close(dbDyn, ps); dbDyn = null; ps = null; } } | 18,577 |
1 | public static boolean predictDataSet(String completePath, String Type, String predictionOutputFileName, String slopeOneDataFolderName) { try { if (Type.equalsIgnoreCase("Qualifying")) { File inputFile = new File(completePath + fSep + "SmartGRAPE" + fSep + "CompleteQualifyingDataInByteFormat.txt"); FileChannel inC = new FileInputStream(inputFile).getChannel(); int filesize = (int) inC.size(); TShortObjectHashMap qualMap = new TShortObjectHashMap(17770, 1); ByteBuffer qualmappedfile = inC.map(FileChannel.MapMode.READ_ONLY, 0, filesize); while (qualmappedfile.hasRemaining()) { short movie = qualmappedfile.getShort(); int customer = qualmappedfile.getInt(); if (qualMap.containsKey(movie)) { TIntArrayList arr = (TIntArrayList) qualMap.get(movie); arr.add(customer); qualMap.put(movie, arr); } else { TIntArrayList arr = new TIntArrayList(); arr.add(customer); qualMap.put(movie, arr); } } System.out.println("Populated qualifying hashmap"); File outFile = new File(completePath + fSep + "SmartGRAPE" + fSep + predictionOutputFileName); FileChannel outC = new FileOutputStream(outFile).getChannel(); ByteBuffer buf; TShortObjectHashMap movieDiffStats; double finalPrediction; short[] movies = qualMap.keys(); Arrays.sort(movies); for (int i = 0; i < movies.length; i++) { short movieToProcess = movies[i]; movieDiffStats = loadMovieDiffStats(completePath, movieToProcess, slopeOneDataFolderName); System.out.println(movieDiffStats.size()); TIntArrayList customersToProcess = (TIntArrayList) qualMap.get(movieToProcess); for (int j = 0; j < customersToProcess.size(); j++) { int customerToProcess = customersToProcess.getQuick(j); finalPrediction = predictSlopeOneRating(customerToProcess, movieDiffStats); if (finalPrediction == finalPrediction) { if (finalPrediction < 1.0) finalPrediction = 1.0; else if (finalPrediction > 5.0) finalPrediction = 5.0; } else finalPrediction = GetAveragePrediction(movieToProcess); buf = ByteBuffer.allocate(10); buf.putShort(movieToProcess); buf.putInt(customerToProcess); buf.putFloat(new Double(finalPrediction).floatValue()); buf.flip(); outC.write(buf); } } outC.close(); return true; } else if (Type.equalsIgnoreCase("Probe")) { File inputFile = new File(completePath + fSep + "SmartGRAPE" + fSep + "CompleteProbeDataInByteFormat.txt"); FileChannel inC = new FileInputStream(inputFile).getChannel(); int filesize = (int) inC.size(); TShortObjectHashMap probeMap = new TShortObjectHashMap(17770, 1); ByteBuffer probemappedfile = inC.map(FileChannel.MapMode.READ_ONLY, 0, filesize); while (probemappedfile.hasRemaining()) { short movie = probemappedfile.getShort(); int customer = probemappedfile.getInt(); byte rating = probemappedfile.get(); if (probeMap.containsKey(movie)) { TIntByteHashMap actualRatings = (TIntByteHashMap) probeMap.get(movie); actualRatings.put(customer, rating); probeMap.put(movie, actualRatings); } else { TIntByteHashMap actualRatings = new TIntByteHashMap(); actualRatings.put(customer, rating); probeMap.put(movie, actualRatings); } } System.out.println("Populated probe hashmap"); File outFile = new File(completePath + fSep + "SmartGRAPE" + fSep + predictionOutputFileName); FileChannel outC = new FileOutputStream(outFile).getChannel(); ByteBuffer buf; double finalPrediction; TShortObjectHashMap movieDiffStats; short[] movies = probeMap.keys(); Arrays.sort(movies); for (int i = 0; i < movies.length; i++) { short movieToProcess = movies[i]; movieDiffStats = loadMovieDiffStats(completePath, movieToProcess, slopeOneDataFolderName); TIntByteHashMap custRatingsToProcess = (TIntByteHashMap) probeMap.get(movieToProcess); TIntArrayList customersToProcess = new TIntArrayList(custRatingsToProcess.keys()); for (int j = 0; j < customersToProcess.size(); j++) { int customerToProcess = customersToProcess.getQuick(j); byte rating = custRatingsToProcess.get(customerToProcess); finalPrediction = predictSlopeOneRating(customerToProcess, movieDiffStats); if (finalPrediction == finalPrediction) { if (finalPrediction < 1.0) finalPrediction = 1.0; else if (finalPrediction > 5.0) finalPrediction = 5.0; } else finalPrediction = GetAveragePrediction(movieToProcess); buf = ByteBuffer.allocate(11); buf.putShort(movieToProcess); buf.putInt(customerToProcess); buf.put(rating); buf.putFloat(new Double(finalPrediction).floatValue()); buf.flip(); outC.write(buf); } } outC.close(); return true; } else return false; } catch (Exception e) { e.printStackTrace(); return false; } } | private void serveCGI(TinyCGI script) throws IOException, TinyWebThreadException { parseHTTPHeaders(); OutputStream cgiOut = null; File tempFile = null; try { if (script == null) sendError(500, "Internal Error", "Couldn't load script."); if (script instanceof TinyCGIHighVolume) { tempFile = File.createTempFile("cgi", null); cgiOut = new FileOutputStream(tempFile); } else { cgiOut = new ByteArrayOutputStream(); } script.service(inputStream, cgiOut, env); } catch (Exception cgie) { this.exceptionEncountered = cgie; if (tempFile != null) tempFile.delete(); if (clientSocket == null) { return; } else if (cgie instanceof TinyCGIException) { TinyCGIException tce = (TinyCGIException) cgie; sendError(tce.getStatus(), tce.getTitle(), tce.getText(), tce.getOtherHeaders()); } else { StringWriter w = new StringWriter(); cgie.printStackTrace(new PrintWriter(w)); sendError(500, "CGI Error", "Error running script: " + "<PRE>" + w.toString() + "</PRE>"); } } finally { if (script != null) doneWithScript(script); } InputStream cgiResults = null; long totalSize = 0; if (tempFile == null) { byte[] results = ((ByteArrayOutputStream) cgiOut).toByteArray(); totalSize = results.length; cgiResults = new ByteArrayInputStream(results); } else { cgiOut.close(); totalSize = tempFile.length(); cgiResults = new FileInputStream(tempFile); } String contentType = null, statusString = "OK", line, header; StringBuffer otherHeaders = new StringBuffer(); StringBuffer text = new StringBuffer(); int status = 200; int headerLength = 0; while (true) { line = readLine(cgiResults, true); headerLength += line.length(); if (line.charAt(0) == '\r' || line.charAt(0) == '\n') break; header = parseHeader(line, text); if (header.toUpperCase().equals("STATUS")) { statusString = text.toString(); status = Integer.parseInt(statusString.substring(0, 3)); statusString = statusString.substring(4); } else if (header.toUpperCase().equals("CONTENT-TYPE")) contentType = text.toString(); else { if (header.toUpperCase().equals("LOCATION")) status = 302; otherHeaders.append(header).append(": ").append(text.toString()).append(CRLF); } } sendHeaders(status, statusString, contentType, totalSize - headerLength, -1, otherHeaders.toString()); byte[] buf = new byte[2048]; int bytesRead; while ((bytesRead = cgiResults.read(buf)) != -1) outputStream.write(buf, 0, bytesRead); outputStream.flush(); try { cgiResults.close(); if (tempFile != null) tempFile.delete(); } catch (IOException ioe) { } } | 18,578 |
1 | public MemoryTextBody(InputStream is, String mimeCharset) throws IOException { this.mimeCharset = mimeCharset; TempPath tempPath = TempStorage.getInstance().getRootTempPath(); ByteArrayOutputStream out = new ByteArrayOutputStream(); IOUtils.copy(is, out); out.close(); tempFile = out.toByteArray(); } | public void gzip(File from, File to) { OutputStream out_zip = null; ArchiveOutputStream os = null; try { try { out_zip = new FileOutputStream(to); os = new ArchiveStreamFactory().createArchiveOutputStream("zip", out_zip); os.putArchiveEntry(new ZipArchiveEntry(from.getName())); IOUtils.copy(new FileInputStream(from), os); os.closeArchiveEntry(); } finally { if (os != null) { os.close(); } } out_zip.close(); } catch (IOException ex) { fatal("IOException", ex); } catch (ArchiveException ex) { fatal("ArchiveException", ex); } } | 18,579 |
0 | public synchronized String encrypt(String plaintext) throws Exception { MessageDigest md = null; try { md = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { throw e; } try { md.update(plaintext.getBytes("UTF-8")); } catch (UnsupportedEncodingException e) { throw e; } byte raw[] = md.digest(); String hash = (new BASE64Encoder()).encode(raw); return hash; } | public void transform(String style, String spec, OutputStream out) throws IOException { URL url = new URL(rootURL, spec); InputStream in = new PatchXMLSymbolsStream(new StripDoctypeStream(url.openStream())); transform(style, in, out); in.close(); } | 18,580 |
0 | public static String checkUpdate() { URL url = null; try { url = new URL("http://googlemeupdate.bravehost.com/"); } catch (MalformedURLException ex) { ex.printStackTrace(); } InputStream html = null; try { html = url.openStream(); int c = 0; String Buffer = ""; String Code = ""; while (c != -1) { try { c = html.read(); } catch (IOException ex) { } Buffer = Buffer + (char) c; } return Buffer.substring(Buffer.lastIndexOf("Google.mE Version: ") + 19, Buffer.indexOf("||")); } catch (IOException ex) { ex.printStackTrace(); return ""; } } | private static String md5Encode(String pass) { String string; try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(pass.getBytes()); byte[] result = md.digest(); string = bytes2hexStr(result); } catch (NoSuchAlgorithmException e) { throw new RuntimeException("La libreria java.security no implemente MD5"); } return string; } | 18,581 |
0 | @Override public void login() { loginsuccessful = false; try { HttpParams params = new BasicHttpParams(); params.setParameter("http.useragent", "Mozilla/5.0 (Windows; U; Windows NT 6.1; en-GB; rv:1.9.2) Gecko/20100115 Firefox/3.6"); DefaultHttpClient httpclient = new DefaultHttpClient(params); NULogger.getLogger().info("Trying to log in to HotFile"); HttpPost httppost = new HttpPost("http://www.hotfile.com/login.php"); httppost.setHeader("Referer", "http://www.hotfile.com/"); httppost.setHeader("Cache-Control", "max-age=0"); httppost.setHeader("Origin", "http://www.hotfile.com/"); httppost.setHeader("Accept", "application/xml,application/xhtml+xml,text/html;q=0.9,text/plain;q=0.8,image/png,*/*;q=0.5"); List<NameValuePair> formparams = new ArrayList<NameValuePair>(); formparams.add(new BasicNameValuePair("returnto", "%2F")); formparams.add(new BasicNameValuePair("user", getUsername())); formparams.add(new BasicNameValuePair("pass", getPassword())); UrlEncodedFormEntity entity = new UrlEncodedFormEntity(formparams, "UTF-8"); httppost.setEntity(entity); HttpResponse httpresponse = httpclient.execute(httppost); if (httpresponse.getFirstHeader("Set-Cookie") == null) { NULogger.getLogger().info("HotFile Login not successful"); loginsuccessful = false; username = ""; password = ""; JOptionPane.showMessageDialog(NeembuuUploader.getInstance(), "<html><b>" + HOSTNAME + "</b> " + TranslationProvider.get("neembuuuploader.accounts.loginerror") + "</html>", HOSTNAME, JOptionPane.WARNING_MESSAGE); AccountsManager.getInstance().setVisible(true); } else { Iterator<Cookie> it = httpclient.getCookieStore().getCookies().iterator(); while (it.hasNext()) { hfcookie = it.next(); if (hfcookie.getName().equals("auth")) { NULogger.getLogger().log(Level.INFO, "hotfile login successful auth:{0}", hfcookie.getValue()); loginsuccessful = true; HostsPanel.getInstance().hotFileCheckBox.setEnabled(true); username = getUsername(); password = getPassword(); break; } } } } catch (Exception ex) { NULogger.getLogger().log(Level.SEVERE, "{0}: Error in Hotfile Login", getClass().getName()); } } | public void gzipCompress(String file) { try { File inputFile = new File(file); FileInputStream fileinput = new FileInputStream(inputFile); File outputFile = new File(file.substring(0, file.length() - 1) + "z"); FileOutputStream stream = new FileOutputStream(outputFile); GZIPOutputStream gzipstream = new GZIPOutputStream(stream); BufferedInputStream bis = new BufferedInputStream(fileinput); int bytes_read = 0; byte[] buf = new byte[READ_BUFFER_SIZE]; while ((bytes_read = bis.read(buf, 0, BLOCK_SIZE)) != -1) { gzipstream.write(buf, 0, bytes_read); } bis.close(); inputFile.delete(); gzipstream.finish(); gzipstream.close(); } catch (FileNotFoundException fnfe) { System.out.println("Compressor: Cannot find file " + fnfe.getMessage()); } catch (SecurityException se) { System.out.println("Problem saving file " + se.getMessage()); } catch (IOException ioe) { System.out.println("Problem saving file " + ioe.getMessage()); } } | 18,582 |
0 | public HttpEntity execute(final HttpRequestBase request) throws IOException, ClientProtocolException { final HttpResponse response = mClient.execute(request); final int statusCode = response.getStatusLine().getStatusCode(); if (statusCode == HttpStatus.SC_OK | statusCode == HttpStatus.SC_CREATED) { return response.getEntity(); } return null; } | protected PTask commit_result(Result r, SyrupConnection con) throws Exception { try { int logAction = LogEntry.ENDED; String kk = r.context().task().key(); if (r.in_1_consumed() && r.context().in_1_link() != null) { sqlImpl().updateFunctions().updateInLink(kk, false, null, con); logAction = logAction | LogEntry.IN_1; } if (r.in_2_consumed() && r.context().in_2_link() != null) { sqlImpl().updateFunctions().updateInLink(kk, true, null, con); logAction = logAction | LogEntry.IN_2; } if (r.out_1_result() != null && r.context().out_1_link() != null) { sqlImpl().updateFunctions().updateOutLink(kk, false, r.out_1_result(), con); logAction = logAction | LogEntry.OUT_1; } if (r.out_2_result() != null && r.context().out_2_link() != null) { sqlImpl().updateFunctions().updateOutLink(kk, true, r.out_2_result(), con); logAction = logAction | LogEntry.OUT_2; } sqlImpl().loggingFunctions().log(r.context().task().key(), logAction, con); boolean isParent = r.context().task().isParent(); if (r instanceof Workflow) { Workflow w = (Workflow) r; Task[] tt = w.tasks(); Link[] ll = w.links(); Hashtable tkeyMap = new Hashtable(); for (int i = 0; i < tt.length; i++) { String key = sqlImpl().creationFunctions().newTask(tt[i], r.context().task(), con); tkeyMap.put(tt[i], key); } for (int j = 0; j < ll.length; j++) { sqlImpl().creationFunctions().newLink(ll[j], tkeyMap, con); } String in_link_1 = sqlImpl().queryFunctions().readInTask(kk, false, con); String in_link_2 = sqlImpl().queryFunctions().readInTask(kk, true, con); String out_link_1 = sqlImpl().queryFunctions().readOutTask(kk, false, con); String out_link_2 = sqlImpl().queryFunctions().readOutTask(kk, true, con); sqlImpl().updateFunctions().rewireInLink(kk, false, w.in_1_binding(), tkeyMap, con); sqlImpl().updateFunctions().rewireInLink(kk, true, w.in_2_binding(), tkeyMap, con); sqlImpl().updateFunctions().rewireOutLink(kk, false, w.out_1_binding(), tkeyMap, con); sqlImpl().updateFunctions().rewireOutLink(kk, true, w.out_2_binding(), tkeyMap, con); for (int k = 0; k < tt.length; k++) { String kkey = (String) tkeyMap.get(tt[k]); sqlImpl().updateFunctions().checkAndUpdateDone(kkey, con); } sqlImpl().updateFunctions().checkAndUpdateDone(in_link_1, con); sqlImpl().updateFunctions().checkAndUpdateDone(in_link_2, con); sqlImpl().updateFunctions().checkAndUpdateDone(out_link_1, con); sqlImpl().updateFunctions().checkAndUpdateDone(out_link_2, con); for (int k = 0; k < tt.length; k++) { String kkey = (String) tkeyMap.get(tt[k]); sqlImpl().updateFunctions().checkAndUpdateTargetExecutable(kkey, con); } sqlImpl().updateFunctions().checkAndUpdateTargetExecutable(in_link_1, con); sqlImpl().updateFunctions().checkAndUpdateTargetExecutable(in_link_2, con); sqlImpl().updateFunctions().checkAndUpdateTargetExecutable(out_link_1, con); sqlImpl().updateFunctions().checkAndUpdateTargetExecutable(out_link_2, con); isParent = true; } sqlImpl().updateFunctions().checkAndUpdateDone(kk, con); sqlImpl().updateFunctions().checkAndUpdateTargetExecutable(kk, con); PreparedStatement s3 = null; s3 = con.prepareStatementFromCache(sqlImpl().sqlStatements().updateTaskModificationStatement()); java.util.Date dd = new java.util.Date(); s3.setLong(1, dd.getTime()); s3.setBoolean(2, isParent); s3.setString(3, r.context().task().key()); s3.executeUpdate(); sqlImpl().loggingFunctions().log(kk, LogEntry.ENDED, con); con.commit(); return sqlImpl().queryFunctions().readPTask(kk, con); } finally { con.rollback(); } } | 18,583 |
0 | public void testDecodeJTLM_publish100() throws Exception { EXISchema corpus = EXISchemaFactoryTestUtil.getEXISchema("/JTLM/schemas/TLMComposite.xsd", getClass(), m_compilerErrors); Assert.assertEquals(0, m_compilerErrors.getTotalCount()); GrammarCache grammarCache = new GrammarCache(corpus, GrammarOptions.DEFAULT_OPTIONS); String[] exiFiles = { "/JTLM/publish100/publish100.bitPacked", "/JTLM/publish100/publish100.byteAligned", "/JTLM/publish100/publish100.preCompress", "/JTLM/publish100/publish100.compress" }; for (int i = 0; i < Alignments.length; i++) { AlignmentType alignment = Alignments[i]; EXIDecoder decoder = new EXIDecoder(); Scanner scanner; decoder.setAlignmentType(alignment); URL url = resolveSystemIdAsURL(exiFiles[i]); int n_events, n_texts; decoder.setEXISchema(grammarCache); decoder.setInputStream(url.openStream()); scanner = decoder.processHeader(); ArrayList<EXIEvent> exiEventList = new ArrayList<EXIEvent>(); EXIEvent exiEvent; n_events = 0; n_texts = 0; while ((exiEvent = scanner.nextEvent()) != null) { ++n_events; if (exiEvent.getEventVariety() == EXIEvent.EVENT_CH) { String stringValue = exiEvent.getCharacters().makeString(); if (stringValue.length() == 0 && exiEvent.getEventType().itemType == EventCode.ITEM_SCHEMA_CH) { --n_events; continue; } if (n_texts % 100 == 0) { final int n = n_texts / 100; Assert.assertEquals(publish100_centennials[n], stringValue); } ++n_texts; } exiEventList.add(exiEvent); } Assert.assertEquals(10610, n_events); } } | private static Properties getProperties(String propFilename) { Properties properties = new Properties(); try { URL url = Loader.getResource(propFilename); properties.load(url.openStream()); } catch (Exception e) { log.debug("Cannot find SAML property file: " + propFilename); throw new RuntimeException("SAMLIssuerFactory: Cannot load properties: " + propFilename); } return properties; } | 18,584 |
1 | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | private void displayDiffResults() throws IOException { File outFile = File.createTempFile("diff", ".htm"); outFile.deleteOnExit(); FileOutputStream outStream = new FileOutputStream(outFile); BufferedWriter out = new BufferedWriter(new OutputStreamWriter(outStream)); out.write("<html><head><title>LOC Differences</title>\n" + SCRIPT + "</head>\n" + "<body bgcolor='#ffffff'>\n" + "<div onMouseOver=\"window.defaultStatus='Metrics'\">\n"); if (addedTable.length() > 0) { out.write("<table border><tr><th>Files Added:</th>" + "<th>Add</th><th>Type</th></tr>"); out.write(addedTable.toString()); out.write("</table><br><br>"); } if (modifiedTable.length() > 0) { out.write("<table border><tr><th>Files Modified:</th>" + "<th>Base</th><th>Del</th><th>Mod</th><th>Add</th>" + "<th>Total</th><th>Type</th></tr>"); out.write(modifiedTable.toString()); out.write("</table><br><br>"); } if (deletedTable.length() > 0) { out.write("<table border><tr><th>Files Deleted:</th>" + "<th>Del</th><th>Type</th></tr>"); out.write(deletedTable.toString()); out.write("</table><br><br>"); } out.write("<table name=METRICS BORDER>\n"); if (modifiedTable.length() > 0 || deletedTable.length() > 0) { out.write("<tr><td>Base: </td><td>"); out.write(Long.toString(base)); out.write("</td></tr>\n<tr><td>Deleted: </td><td>"); out.write(Long.toString(deleted)); out.write("</td></tr>\n<tr><td>Modified: </td><td>"); out.write(Long.toString(modified)); out.write("</td></tr>\n<tr><td>Added: </td><td>"); out.write(Long.toString(added)); out.write("</td></tr>\n<tr><td>New & Changed: </td><td>"); out.write(Long.toString(added + modified)); out.write("</td></tr>\n"); } out.write("<tr><td>Total: </td><td>"); out.write(Long.toString(total)); out.write("</td></tr>\n</table></div>"); redlinesOut.close(); out.flush(); InputStream redlines = new FileInputStream(redlinesTempFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = redlines.read(buffer)) != -1) outStream.write(buffer, 0, bytesRead); outStream.write("</BODY></HTML>".getBytes()); outStream.close(); Browser.launch(outFile.toURL().toString()); } | 18,585 |
0 | public static JSONObject fromUrl(String url) throws Throwable { Validate.notEmpty(url); InputStream stream = null; HttpClient httpclient = null; try { httpclient = new DefaultHttpClient(); HttpGet httpget = new HttpGet(url); HttpResponse response = httpclient.execute(httpget); if (response != null) { HttpEntity entity = response.getEntity(); if (entity != null) { try { stream = entity.getContent(); return fromStream(stream); } finally { try { if (stream != null) stream.close(); } catch (Exception ex) { } } } } } catch (Throwable tr) { Logger.e(TAG, "fromUrl", tr); throw tr; } finally { if (httpclient != null) httpclient.getConnectionManager().shutdown(); } return null; } | protected static void clearTables() throws SQLException { Connection conn = null; Statement stmt = null; try { conn = FidoDataSource.getConnection(); conn.setAutoCommit(false); stmt = conn.createStatement(); ClearData.clearTables(stmt); stmt.executeUpdate("insert into Objects (ObjectId, Description) values (2, '')"); stmt.executeUpdate("insert into Objects (ObjectId, Description) values (3, '')"); stmt.executeUpdate("insert into Objects (ObjectId, Description) values (4, '')"); stmt.executeUpdate("insert into Objects (ObjectId, Description) values (5, '')"); stmt.executeUpdate("insert into Objects (ObjectId, Description) values (6, '')"); stmt.executeUpdate("insert into Objects (ObjectId, Description) values (7, '')"); stmt.executeUpdate("insert into Objects (ObjectId, Description) values (8, '')"); conn.commit(); } catch (SQLException e) { if (conn != null) conn.rollback(); throw e; } finally { if (stmt != null) stmt.close(); if (conn != null) conn.close(); } } | 18,586 |
0 | protected void processRequest(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException { ServletConfig config = getServletConfig(); ServletContext context = config.getServletContext(); try { String driver = context.getInitParameter("driver"); Class.forName(driver); String dbURL = context.getInitParameter("db"); String username = context.getInitParameter("username"); String password = ""; connection = DriverManager.getConnection(dbURL, username, password); } catch (ClassNotFoundException e) { System.out.println("Database driver not found."); } catch (SQLException e) { System.out.println("Error opening the db connection: " + e.getMessage()); } String action = ""; HttpSession session = request.getSession(); session.setMaxInactiveInterval(300); if (request.getParameter("action") != null) { action = request.getParameter("action"); } else { RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/login.jsp"); dispatcher.forward(request, response); return; } if (action.equals("login")) { String username = request.getParameter("username"); String password = request.getParameter("password"); MessageDigest md = null; try { md = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { error = "There was an error encrypting password."; session.setAttribute("error", error); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/error.jsp"); dispatcher.forward(request, response); return; } try { md.update(password.getBytes("UTF-8")); } catch (UnsupportedEncodingException e) { error = "There was an error encrypting password."; session.setAttribute("error", error); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/error.jsp"); dispatcher.forward(request, response); return; } String encrypted_password = (new BASE64Encoder()).encode(md.digest()); try { String sql = "SELECT * FROM person WHERE email LIKE '" + username + "' AND password='" + encrypted_password + "'"; dbStatement = connection.createStatement(); dbResultSet = dbStatement.executeQuery(sql); if (dbResultSet.next()) { Person person = new Person(dbResultSet.getString("fname"), dbResultSet.getString("lname"), dbResultSet.getString("address1"), dbResultSet.getString("address2"), dbResultSet.getString("city"), dbResultSet.getString("state"), dbResultSet.getString("zip"), dbResultSet.getString("email"), dbResultSet.getString("password"), dbResultSet.getInt("is_admin")); String member_type = dbResultSet.getString("member_type"); String person_id = Integer.toString(dbResultSet.getInt("id")); session.setAttribute("person", person); session.setAttribute("member_type", member_type); session.setAttribute("person_id", person_id); } else { notice = "Your username and/or password is incorrect."; request.setAttribute("notice", notice); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/index.jsp"); dispatcher.forward(request, response); return; } } catch (SQLException e) { error = "There was an error trying to login. (SQL Statement)"; session.setAttribute("error", error); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/error.jsp"); dispatcher.forward(request, response); return; } RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/index.jsp"); dispatcher.forward(request, response); return; } else { notice = "Unable to log you in. Please try again."; request.setAttribute("notice", notice); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/login.jsp"); dispatcher.forward(request, response); return; } } | public static void getResponseAsStream(String _url, Object _stringOrStream, OutputStream _stream, Map<String, String> _headers, Map<String, String> _params, String _contentType, int _timeout) throws IOException { if (_url == null || _url.length() <= 0) throw new IllegalArgumentException("Url can not be null."); String temp = _url.toLowerCase(); if (!temp.startsWith("http://") && !temp.startsWith("https://")) _url = "http://" + _url; _url = encodeURL(_url); HttpMethod method = null; if (_stringOrStream == null && (_params == null || _params.size() <= 0)) method = new GetMethod(_url); else method = new PostMethod(_url); HttpMethodParams methodParams = ((HttpMethodBase) method).getParams(); if (methodParams == null) { methodParams = new HttpMethodParams(); ((HttpMethodBase) method).setParams(methodParams); } if (_timeout < 0) methodParams.setSoTimeout(0); else methodParams.setSoTimeout(_timeout); if (_contentType != null && _contentType.length() > 0) { if (_headers == null) _headers = new HashMap<String, String>(); _headers.put("Content-Type", _contentType); } if (_headers == null || !_headers.containsKey("User-Agent")) { if (_headers == null) _headers = new HashMap<String, String>(); _headers.put("User-Agent", DEFAULT_USERAGENT); } if (_headers != null) { Iterator<Map.Entry<String, String>> iter = _headers.entrySet().iterator(); while (iter.hasNext()) { Map.Entry<String, String> entry = iter.next(); method.setRequestHeader((String) entry.getKey(), (String) entry.getValue()); } } if (method instanceof PostMethod && (_params != null && _params.size() > 0)) { Iterator<Map.Entry<String, String>> iter = _params.entrySet().iterator(); while (iter.hasNext()) { Map.Entry<String, String> entry = iter.next(); ((PostMethod) method).addParameter((String) entry.getKey(), (String) entry.getValue()); } } if (method instanceof EntityEnclosingMethod && _stringOrStream != null) { if (_stringOrStream instanceof InputStream) { RequestEntity entity = new InputStreamRequestEntity((InputStream) _stringOrStream); ((EntityEnclosingMethod) method).setRequestEntity(entity); } else { RequestEntity entity = new StringRequestEntity(_stringOrStream.toString(), _contentType, null); ((EntityEnclosingMethod) method).setRequestEntity(entity); } } HttpClient httpClient = new HttpClient(new org.apache.commons.httpclient.SimpleHttpConnectionManager()); httpClient.getParams().setBooleanParameter(HttpClientParams.ALLOW_CIRCULAR_REDIRECTS, true); InputStream instream = null; try { int status = httpClient.executeMethod(method); if (status != HttpStatus.SC_OK) { LOG.warn("Http Satus:" + status + ",Url:" + _url); if (status >= 500 && status < 600) throw new IOException("Remote service<" + _url + "> respose a error, status:" + status); } instream = method.getResponseBodyAsStream(); IOUtils.copy(instream, _stream); } catch (IOException err) { LOG.error("Failed to access " + _url, err); throw err; } finally { IOUtils.closeQuietly(instream); if (method != null) method.releaseConnection(); } } | 18,587 |
1 | public static String getRandomUserAgent() { if (USER_AGENT_CACHE == null) { Collection<String> userAgentsCache = new ArrayList<String>(); try { URL url = Tools.getResource(UserAgent.class.getClassLoader(), "user-agents-browser.txt"); BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream())); String str; while ((str = in.readLine()) != null) { userAgentsCache.add(str); } in.close(); USER_AGENT_CACHE = userAgentsCache.toArray(new String[userAgentsCache.size()]); } catch (Exception e) { System.err.println("Can not read file; using default user-agent; error message: " + e.getMessage()); return DEFAULT_USER_AGENT; } } return USER_AGENT_CACHE[new Random().nextInt(USER_AGENT_CACHE.length)]; } | private void createNodes() { try { URL url = this.getClass().getResource(this.nodeFileName); InputStreamReader inReader = new InputStreamReader(url.openStream()); BufferedReader inNodes = new BufferedReader(inReader); // BufferedReader inNodes = new BufferedReader(new // FileReader("NodesFile.txt")); String s; while ((s = inNodes.readLine()) != null) { String label = inNodes.readLine(); String fullText = inNodes.readLine(); String type = inNodes.readLine(); Node n = new Node(s, type); n.label = label; n.fullText = fullText; node.add(n); } inNodes.close(); url = this.getClass().getResource(this.edgeFileName); inReader = new InputStreamReader(url.openStream()); BufferedReader inEdges = new BufferedReader(inReader); // BufferedReader inEdges = new BufferedReader(new // FileReader("EdgesFile.txt")); while ((s = inEdges.readLine()) != null) edge.add(new Edge(s, inEdges.readLine(), inEdges.readLine(), inEdges.readLine())); inEdges.close(); } catch (FileNotFoundException e) { // TODO �Զ���� catch �� e.printStackTrace(); } catch (IOException e) { // TODO �Զ���� catch �� e.printStackTrace(); } /* * for(Myparser.Nd x:FreeConnectTest.pNd){ Node n = new Node(x.id, * x.type); n.label = x.label; node.add(n); } for(Myparser.Ed * x:FreeConnectTest.pEd) edge.add(new Edge(x.id, x.source.id, * x.target.id)); */ } | 18,588 |
0 | @SuppressWarnings("unchecked") protected void initializeGraphicalViewer() { GraphicalViewer viewer = getGraphicalViewer(); ScalableRootEditPart rootEditPart = new ScalableRootEditPart(); viewer.setEditPartFactory(new DBEditPartFactory()); viewer.setRootEditPart(rootEditPart); ZoomManager manager = rootEditPart.getZoomManager(); double[] zoomLevels = new double[] { 0.25, 0.5, 0.75, 1.0, 1.5, 2.0, 2.5, 3.0, 4.0, 5.0, 10.0, 20.0 }; manager.setZoomLevels(zoomLevels); List<String> zoomContributions = new ArrayList<String>(); zoomContributions.add(ZoomManager.FIT_ALL); zoomContributions.add(ZoomManager.FIT_HEIGHT); zoomContributions.add(ZoomManager.FIT_WIDTH); manager.setZoomLevelContributions(zoomContributions); getActionRegistry().registerAction(new ZoomInAction(manager)); getActionRegistry().registerAction(new ZoomOutAction(manager)); PrintAction printAction = new PrintAction(this); printAction.setText(DBPlugin.getResourceString("action.print")); printAction.setImageDescriptor(DBPlugin.getImageDescriptor("icons/print.gif")); getActionRegistry().registerAction(printAction); IFile file = ((IFileEditorInput) getEditorInput()).getFile(); RootModel root = null; try { root = VisualDBSerializer.deserialize(file.getContents()); } catch (Exception ex) { DBPlugin.logException(ex); root = new RootModel(); root.setDialectName(DialectProvider.getDialectNames()[0]); } viewer.setContents(root); final DeleteAction deleteAction = new DeleteAction((IWorkbenchPart) this); deleteAction.setSelectionProvider(getGraphicalViewer()); getActionRegistry().registerAction(deleteAction); getGraphicalViewer().addSelectionChangedListener(new ISelectionChangedListener() { public void selectionChanged(SelectionChangedEvent event) { deleteAction.update(); } }); MenuManager menuMgr = new MenuManager(); menuMgr.add(new QuickOutlineAction()); menuMgr.add(new Separator()); menuMgr.add(getActionRegistry().getAction(ActionFactory.UNDO.getId())); menuMgr.add(getActionRegistry().getAction(ActionFactory.REDO.getId())); menuMgr.add(new Separator()); PasteAction pasteAction = new PasteAction(this); getActionRegistry().registerAction(pasteAction); getSelectionActions().add(pasteAction.getId()); menuMgr.add(pasteAction); CopyAction copyAction = new CopyAction(this, pasteAction); getActionRegistry().registerAction(copyAction); getSelectionActions().add(copyAction.getId()); menuMgr.add(copyAction); menuMgr.add(getActionRegistry().getAction(ActionFactory.DELETE.getId())); menuMgr.add(new Separator()); menuMgr.add(new AutoLayoutAction(viewer)); menuMgr.add(new DommainEditAction(viewer)); MenuManager convertMenu = new MenuManager(DBPlugin.getResourceString("action.convert")); menuMgr.add(convertMenu); UppercaseAction uppercaseAction = new UppercaseAction(this); convertMenu.add(uppercaseAction); getActionRegistry().registerAction(uppercaseAction); getSelectionActions().add(uppercaseAction.getId()); LowercaseAction lowercaseAction = new LowercaseAction(this); convertMenu.add(lowercaseAction); getActionRegistry().registerAction(lowercaseAction); getSelectionActions().add(lowercaseAction.getId()); Physical2LogicalAction physical2logicalAction = new Physical2LogicalAction(this); convertMenu.add(physical2logicalAction); getActionRegistry().registerAction(physical2logicalAction); getSelectionActions().add(physical2logicalAction.getId()); Logical2PhysicalAction logical2physicalAction = new Logical2PhysicalAction(this); convertMenu.add(logical2physicalAction); getActionRegistry().registerAction(logical2physicalAction); getSelectionActions().add(logical2physicalAction.getId()); menuMgr.add(new ToggleModelAction(viewer)); menuMgr.add(new ChangeDBTypeAction(viewer)); menuMgr.add(new Separator()); menuMgr.add(getActionRegistry().getAction(GEFActionConstants.ZOOM_IN)); menuMgr.add(getActionRegistry().getAction(GEFActionConstants.ZOOM_OUT)); menuMgr.add(new Separator()); menuMgr.add(new CopyAsImageAction(viewer)); menuMgr.add(getActionRegistry().getAction(ActionFactory.PRINT.getId())); menuMgr.add(new Separator()); MenuManager validation = new MenuManager(DBPlugin.getResourceString("action.validation")); validation.add(new ValidateAction(viewer)); validation.add(new DeleteMarkerAction(viewer)); menuMgr.add(validation); MenuManager importMenu = new MenuManager(DBPlugin.getResourceString("action.import")); importMenu.add(new ImportFromJDBCAction(viewer)); importMenu.add(new ImportFromDiagramAction(viewer)); menuMgr.add(importMenu); MenuManager generate = new MenuManager(DBPlugin.getResourceString("action.export")); IGenerator[] generaters = GeneratorProvider.getGeneraters(); for (int i = 0; i < generaters.length; i++) { generate.add(new GenerateAction(generaters[i], viewer, this)); } menuMgr.add(generate); menuMgr.add(new SelectedTablesDDLAction(viewer)); viewer.setContextMenu(menuMgr); viewer.getControl().addMouseListener(new MouseAdapter() { public void mouseDoubleClick(MouseEvent e) { IStructuredSelection selection = (IStructuredSelection) getGraphicalViewer().getSelection(); Object obj = selection.getFirstElement(); if (obj != null && obj instanceof IDoubleClickSupport) { ((IDoubleClickSupport) obj).doubleClicked(); } } }); outlinePage = new VisualDBOutlinePage(viewer, getEditDomain(), root, getSelectionSynchronizer()); applyPreferences(); viewer.getControl().addKeyListener(new KeyAdapter() { @Override public void keyPressed(KeyEvent e) { if (e.stateMask == SWT.CTRL && e.keyCode == 'o') { new QuickOutlineAction().run(); } } }); } | public static byte[] read(URL url) throws IOException { byte[] bytes; InputStream is = null; try { is = url.openStream(); bytes = readAllBytes(is); } finally { if (is != null) { is.close(); } } return bytes; } | 18,589 |
1 | public String readFile(String filename) throws UnsupportedEncodingException, FileNotFoundException, IOException { File f = new File(baseDir); f = new File(f, filename); StringWriter w = new StringWriter(); Reader fr = new InputStreamReader(new FileInputStream(f), "UTF-8"); IOUtils.copy(fr, w); fr.close(); w.close(); String contents = w.toString(); return contents; } | private static void main(String[] args) { try { File f = new File("test.txt"); if (f.exists()) { throw new IOException(f + " already exists. I don't want to overwrite it."); } StraightStreamReader in; char[] cbuf = new char[0x1000]; int read; int totRead; FileOutputStream out = new FileOutputStream(f); for (int i = 0x00; i < 0x100; i++) { out.write(i); } out.close(); in = new StraightStreamReader(new FileInputStream(f)); for (int i = 0x00; i < 0x100; i++) { read = in.read(); if (read != i) { System.err.println("Error: " + i + " read as " + read); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = in.read(cbuf); if (totRead != 0x100) { System.err.println("Simple buffered read did not read the full amount: 0x" + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 7)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); f.delete(); } catch (IOException x) { System.err.println(x.getMessage()); } } | 18,590 |
1 | @Override public boolean accept(File file) { if (file.getName().equals(".svn")) { return false; } final long modify = file.lastModified(); final long time = DateUtils.toDate("2012-03-21 17:43", "yyyy-MM-dd HH:mm").getTime(); if (modify >= time) { if (file.isFile()) { File f = new File(StringsUtils.replace(file.getAbsolutePath(), filePath2, filePath1)); f.getParentFile().mkdirs(); try { IOUtils.copyFile(file, f); } catch (IOException e) { e.printStackTrace(); } System.out.println(f.getName()); } } return true; } | private static boolean genCustomerLocationsFileAndCustomerIndexFile(String completePath, String masterFile, String CustLocationsFileName, String CustIndexFileName) { try { TIntObjectHashMap CustInfoHash = new TIntObjectHashMap(480189, 1); File inFile = new File(completePath + fSep + "SmartGRAPE" + fSep + masterFile); FileChannel inC = new FileInputStream(inFile).getChannel(); File outFile1 = new File(completePath + fSep + "SmartGRAPE" + fSep + CustIndexFileName); FileChannel outC1 = new FileOutputStream(outFile1, true).getChannel(); File outFile2 = new File(completePath + fSep + "SmartGRAPE" + fSep + CustLocationsFileName); FileChannel outC2 = new FileOutputStream(outFile2, true).getChannel(); int fileSize = (int) inC.size(); int totalNoDataRows = fileSize / 7; for (int i = 1; i <= totalNoDataRows; i++) { ByteBuffer mappedBuffer = ByteBuffer.allocate(7); inC.read(mappedBuffer); mappedBuffer.position(0); short movieName = mappedBuffer.getShort(); int customer = mappedBuffer.getInt(); byte rating = mappedBuffer.get(); mappedBuffer.clear(); if (CustInfoHash.containsKey(customer)) { TIntArrayList locations = (TIntArrayList) CustInfoHash.get(customer); locations.add(i); CustInfoHash.put(customer, locations); } else { TIntArrayList locations = new TIntArrayList(); locations.add(i); CustInfoHash.put(customer, locations); } } int[] customers = CustInfoHash.keys(); Arrays.sort(customers); int count = 1; for (int i = 0; i < customers.length; i++) { int customer = customers[i]; TIntArrayList locations = (TIntArrayList) CustInfoHash.get(customer); int noRatingsForCust = locations.size(); ByteBuffer outBuf1 = ByteBuffer.allocate(12); outBuf1.putInt(customer); outBuf1.putInt(count); outBuf1.putInt(count + noRatingsForCust - 1); outBuf1.flip(); outC1.write(outBuf1); count += noRatingsForCust; for (int j = 0; j < locations.size(); j++) { ByteBuffer outBuf2 = ByteBuffer.allocate(4); outBuf2.putInt(locations.get(j)); outBuf2.flip(); outC2.write(outBuf2); } } inC.close(); outC1.close(); outC2.close(); return true; } catch (IOException e) { System.err.println(e); return false; } } | 18,591 |
1 | public static void unzip(File zipInFile, File outputDir) throws Exception { Enumeration<? extends ZipEntry> entries; ZipFile zipFile = new ZipFile(zipInFile); ZipInputStream zipInputStream = new ZipInputStream(new FileInputStream(zipInFile)); ZipEntry entry = (ZipEntry) zipInputStream.getNextEntry(); File curOutDir = outputDir; while (entry != null) { if (entry.isDirectory()) { curOutDir = new File(curOutDir, entry.getName()); curOutDir.mkdirs(); continue; } File outFile = new File(curOutDir, entry.getName()); File tempDir = outFile.getParentFile(); if (!tempDir.exists()) tempDir.mkdirs(); outFile.createNewFile(); BufferedOutputStream outstream = new BufferedOutputStream(new FileOutputStream(outFile)); int n; byte[] buf = new byte[1024]; while ((n = zipInputStream.read(buf, 0, 1024)) > -1) outstream.write(buf, 0, n); outstream.flush(); outstream.close(); zipInputStream.closeEntry(); entry = zipInputStream.getNextEntry(); } zipInputStream.close(); zipFile.close(); } | private void copyFile(File file, File targetFile) { try { BufferedInputStream bis = new BufferedInputStream(new FileInputStream(file)); BufferedOutputStream bos = new BufferedOutputStream(new FileOutputStream(targetFile)); byte[] tmp = new byte[8192]; int read = -1; while ((read = bis.read(tmp)) > 0) { bos.write(tmp, 0, read); } bis.close(); bos.close(); } catch (Exception e) { if (!targetFile.delete()) { System.err.println("Ups, created copy cant be deleted (" + targetFile.getAbsolutePath() + ")"); } } } | 18,592 |
0 | public void copy(String pathFileIn, String pathFileOut) { try { File inputFile = new File(pathFileIn); File outputFile = new File(pathFileOut); FileReader in = new FileReader(inputFile); File outDir = new File(DirOut); if (!outDir.exists()) outDir.mkdirs(); FileWriter out = new FileWriter(outputFile); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); this.printColumn(inputFile.getName(), outputFile.getPath()); } catch (Exception e) { e.printStackTrace(); } } | private String doRawGet(URI uri) throws XdsInternalException { HttpURLConnection conn = null; String response = null; try { URL url; try { url = uri.toURL(); } catch (Exception e) { throw HttpClient.getException(e, uri.toString()); } HttpsURLConnection.setDefaultHostnameVerifier(this); conn = (HttpURLConnection) url.openConnection(); conn.setDoOutput(true); conn.setUseCaches(false); conn.setRequestMethod("GET"); conn.setRequestProperty("Accept", "text/html, text/xml, text/plain, */*"); conn.connect(); response = this.getResponse(conn); } catch (IOException e) { throw HttpClient.getException(e, uri.toString()); } finally { if (conn != null) { conn.disconnect(); } } return response; } | 18,593 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public void setContentAsStream(final InputStream input) throws IOException { ByteArrayOutputStream output = new ByteArrayOutputStream(); try { IOUtils.copy(input, output); } finally { output.close(); } this.content = output.toByteArray(); } | 18,594 |
1 | void copyFile(File inputFile, File outputFile) { try { FileReader in; in = new FileReader(inputFile); FileWriter out = new FileWriter(outputFile); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); } catch (FileNotFoundException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } } | public static void writeToFile(InputStream input, File file, ProgressListener listener, long length) { OutputStream output = null; try { output = new CountingOutputStream(new FileOutputStream(file), listener, length); IOUtils.copy(input, output); } catch (IOException e) { throw new RuntimeException(e); } finally { IOUtils.closeQuietly(input); IOUtils.closeQuietly(output); } } | 18,595 |
1 | private static void unpackEntry(File destinationFile, ZipInputStream zin, ZipEntry entry) throws Exception { if (!entry.isDirectory()) { createFolders(destinationFile.getParentFile()); FileOutputStream fis = new FileOutputStream(destinationFile); try { IOUtils.copy(zin, fis); } finally { zin.closeEntry(); fis.close(); } } else { createFolders(destinationFile); } } | public void doPost(HttpServletRequest req, HttpServletResponse res) throws ServletException, IOException { PrintWriter out = null; ServletOutputStream outstream = null; try { String action = req.getParameter("nmrshiftdbaction"); String relativepath = ServletUtils.expandRelative(this.getServletConfig(), "/WEB-INF"); TurbineConfig tc = new TurbineConfig(relativepath + "..", relativepath + getServletConfig().getInitParameter("properties")); tc.init(); int spectrumId = -1; DBSpectrum spectrum = null; Export export = null; String format = req.getParameter("format"); if (action.equals("test")) { try { res.setContentType("text/plain"); out = res.getWriter(); List l = DBSpectrumPeer.executeQuery("select SPECTRUM_ID from SPECTRUM limit 1"); if (l.size() > 0) spectrumId = ((Record) l.get(0)).getValue(1).asInt(); out.write("success"); } catch (Exception ex) { out.write("failure"); } } else if (action.equals("rss")) { int numbertoexport = 10; out = res.getWriter(); if (req.getParameter("numbertoexport") != null) { try { numbertoexport = Integer.parseInt(req.getParameter("numbertoexport")); if (numbertoexport < 1 || numbertoexport > 20) throw new NumberFormatException("Number to small/large"); } catch (NumberFormatException ex) { out.println("The parameter <code>numbertoexport</code>must be an integer from 1 to 20"); } } res.setContentType("text/xml"); RssWriter rssWriter = new RssWriter(); rssWriter.setWriter(res.getWriter()); AtomContainerSet soac = new AtomContainerSet(); String query = "select distinct MOLECULE.MOLECULE_ID from MOLECULE, SPECTRUM where SPECTRUM.MOLECULE_ID = MOLECULE.MOLECULE_ID and SPECTRUM.REVIEW_FLAG =\"true\" order by MOLECULE.DATE desc;"; List l = NmrshiftdbUserPeer.executeQuery(query); for (int i = 0; i < numbertoexport; i++) { if (i == l.size()) break; DBMolecule mol = DBMoleculePeer.retrieveByPK(new NumberKey(((Record) l.get(i)).getValue(1).asInt())); IMolecule cdkmol = mol.getAsCDKMoleculeAsEntered(1); soac.addAtomContainer(cdkmol); rssWriter.getLinkmap().put(cdkmol, mol.getEasylink(req)); rssWriter.getDatemap().put(cdkmol, mol.getDate()); rssWriter.getTitlemap().put(cdkmol, mol.getChemicalNamesAsOneStringWithFallback()); rssWriter.getCreatormap().put(cdkmol, mol.getNmrshiftdbUser().getUserName()); rssWriter.setCreator(GeneralUtils.getAdminEmail(getServletConfig())); Vector v = mol.getDBCanonicalNames(); for (int k = 0; k < v.size(); k++) { DBCanonicalName canonName = (DBCanonicalName) v.get(k); if (canonName.getDBCanonicalNameType().getCanonicalNameType() == "INChI") { rssWriter.getInchimap().put(cdkmol, canonName.getName()); break; } } rssWriter.setTitle("NMRShiftDB"); rssWriter.setLink("http://www.nmrshiftdb.org"); rssWriter.setDescription("NMRShiftDB is an open-source, open-access, open-submission, open-content web database for chemical structures and their nuclear magnetic resonance data"); rssWriter.setPublisher("NMRShiftDB.org"); rssWriter.setImagelink("http://www.nmrshiftdb.org/images/nmrshift-logo.gif"); rssWriter.setAbout("http://www.nmrshiftdb.org/NmrshiftdbServlet?nmrshiftdbaction=rss"); Collection coll = new ArrayList(); Vector spectra = mol.selectSpectra(null); for (int k = 0; k < spectra.size(); k++) { Element el = ((DBSpectrum) spectra.get(k)).getCmlSpect(); Element el2 = el.getChildElements().get(0); el.removeChild(el2); coll.add(el2); } rssWriter.getMultiMap().put(cdkmol, coll); } rssWriter.write(soac); } else if (action.equals("getattachment")) { res.setContentType("application/zip"); outstream = res.getOutputStream(); DBSample sample = DBSamplePeer.retrieveByPK(new NumberKey(req.getParameter("sampleid"))); outstream.write(sample.getAttachment()); } else if (action.equals("createreport")) { res.setContentType("application/pdf"); outstream = res.getOutputStream(); boolean yearly = req.getParameter("style").equals("yearly"); int yearstart = Integer.parseInt(req.getParameter("yearstart")); int yearend = Integer.parseInt(req.getParameter("yearend")); int monthstart = 0; int monthend = 0; if (!yearly) { monthstart = Integer.parseInt(req.getParameter("monthstart")); monthend = Integer.parseInt(req.getParameter("monthend")); } int type = Integer.parseInt(req.getParameter("type")); JasperReport jasperReport = (JasperReport) JRLoader.loadObject(relativepath + "/reports/" + (yearly ? "yearly" : "monthly") + "_report_" + type + ".jasper"); Map parameters = new HashMap(); if (yearly) parameters.put("HEADER", "Report for years " + yearstart + " - " + yearend); else parameters.put("HEADER", "Report for " + monthstart + "/" + yearstart + " - " + monthend + "/" + yearend); DBConnection dbconn = TurbineDB.getConnection(); Connection conn = dbconn.getConnection(); Statement stmt = conn.createStatement(); ResultSet rs = null; if (type == 1) { rs = stmt.executeQuery("select YEAR(DATE) as YEAR, " + (yearly ? "" : " MONTH(DATE) as MONTH, ") + "AFFILIATION_1, AFFILIATION_2, MACHINE.NAME as NAME, count(*) as C, sum(WISHED_SPECTRUM like '%13C%' or WISHED_SPECTRUM like '%variable temperature%' or WISHED_SPECTRUM like '%ID sel. NOE%' or WISHED_SPECTRUM like '%solvent suppression%' or WISHED_SPECTRUM like '%standard spectrum%') as 1_D, sum(WISHED_SPECTRUM like '%H,H-COSY%' or WISHED_SPECTRUM like '%NOESY%' or WISHED_SPECTRUM like '%HMQC%' or WISHED_SPECTRUM like '%HMBC%') as 2_D, sum(OTHER_WISHED_SPECTRUM!='') as SPECIAL, sum(OTHER_NUCLEI!='') as HETERO, sum(PROCESS='self') as SELF, sum(PROCESS='robot') as ROBOT, sum(PROCESS='worker') as OPERATOR from (SAMPLE join TURBINE_USER using (USER_ID)) join MACHINE on MACHINE.MACHINE_ID=SAMPLE.MACHINE where YEAR(DATE)>=" + yearstart + " and YEAR(DATE)<=" + yearend + " and LOGIN_NAME<>'testuser' group by YEAR, " + (yearly ? "" : "MONTH, ") + "AFFILIATION_1, AFFILIATION_2, MACHINE.NAME"); } else if (type == 2) { rs = stmt.executeQuery("select YEAR(DATE) as YEAR, " + (yearly ? "" : " MONTH(DATE) as MONTH, ") + "MACHINE.NAME as NAME, count(*) as C, sum(WISHED_SPECTRUM like '%13C%' or WISHED_SPECTRUM like '%variable temperature%' or WISHED_SPECTRUM like '%ID sel. NOE%' or WISHED_SPECTRUM like '%solvent suppression%' or WISHED_SPECTRUM like '%standard spectrum%') as 1_D, sum(WISHED_SPECTRUM like '%H,H-COSY%' or WISHED_SPECTRUM like '%NOESY%' or WISHED_SPECTRUM like '%HMQC%' or WISHED_SPECTRUM like '%HMBC%') as 2_D, sum(OTHER_WISHED_SPECTRUM!='') as SPECIAL, sum(OTHER_NUCLEI!='') as HETERO, sum(PROCESS='self') as SELF, sum(PROCESS='robot') as ROBOT, sum(PROCESS='worker') as OPERATOR from (SAMPLE join TURBINE_USER using (USER_ID)) join MACHINE on MACHINE.MACHINE_ID=SAMPLE.MACHINE group by YEAR, " + (yearly ? "" : "MONTH, ") + "MACHINE.NAME"); } JasperPrint jasperPrint = JasperFillManager.fillReport(jasperReport, parameters, new JRResultSetDataSource(rs)); JasperExportManager.exportReportToPdfStream(jasperPrint, outstream); dbconn.close(); } else if (action.equals("exportcmlbyinchi")) { res.setContentType("text/xml"); out = res.getWriter(); String inchi = req.getParameter("inchi"); String spectrumtype = req.getParameter("spectrumtype"); Criteria crit = new Criteria(); crit.add(DBCanonicalNamePeer.NAME, inchi); crit.addJoin(DBCanonicalNamePeer.MOLECULE_ID, DBSpectrumPeer.MOLECULE_ID); crit.addJoin(DBSpectrumPeer.SPECTRUM_TYPE_ID, DBSpectrumTypePeer.SPECTRUM_TYPE_ID); crit.add(DBSpectrumTypePeer.NAME, spectrumtype); try { GeneralUtils.logToSql(crit.toString(), null); } catch (Exception ex) { } Vector spectra = DBSpectrumPeer.doSelect(crit); if (spectra.size() == 0) { out.write("No such molecule or spectrum"); } else { Element cmlElement = new Element("cml"); cmlElement.addAttribute(new Attribute("convention", "nmrshiftdb-convention")); cmlElement.setNamespaceURI("http://www.xml-cml.org/schema"); Element parent = ((DBSpectrum) spectra.get(0)).getDBMolecule().getCML(1); nu.xom.Node cmldoc = parent.getChild(0); ((Element) cmldoc).setNamespaceURI("http://www.xml-cml.org/schema"); parent.removeChildren(); cmlElement.appendChild(cmldoc); for (int k = 0; k < spectra.size(); k++) { Element parentspec = ((DBSpectrum) spectra.get(k)).getCmlSpect(); Node spectrumel = parentspec.getChild(0); parentspec.removeChildren(); cmlElement.appendChild(spectrumel); ((Element) spectrumel).setNamespaceURI("http://www.xml-cml.org/schema"); } out.write(cmlElement.toXML()); } } else if (action.equals("namelist")) { res.setContentType("application/zip"); outstream = res.getOutputStream(); ByteArrayOutputStream baos = new ByteArrayOutputStream(); ZipOutputStream zipout = new ZipOutputStream(baos); Criteria crit = new Criteria(); crit.addJoin(DBMoleculePeer.MOLECULE_ID, DBSpectrumPeer.MOLECULE_ID); crit.add(DBSpectrumPeer.REVIEW_FLAG, "true"); Vector v = DBMoleculePeer.doSelect(crit); for (int i = 0; i < v.size(); i++) { if (i % 500 == 0) { if (i != 0) { zipout.write(new String("<p>The list is continued <a href=\"nmrshiftdb.names." + i + ".html\">here</a></p></body></html>").getBytes()); zipout.closeEntry(); } zipout.putNextEntry(new ZipEntry("nmrshiftdb.names." + i + ".html")); zipout.write(new String("<html><body><h1>This is a list of strcutures in <a href=\"http://www.nmrshiftdb.org\">NMRShiftDB</a>, starting at " + i + ", Its main purpose is to be found by search engines</h1>").getBytes()); } DBMolecule mol = (DBMolecule) v.get(i); zipout.write(new String("<p><a href=\"" + mol.getEasylink(req) + "\">").getBytes()); Vector cannames = mol.getDBCanonicalNames(); for (int k = 0; k < cannames.size(); k++) { zipout.write(new String(((DBCanonicalName) cannames.get(k)).getName() + " ").getBytes()); } Vector chemnames = mol.getDBChemicalNames(); for (int k = 0; k < chemnames.size(); k++) { zipout.write(new String(((DBChemicalName) chemnames.get(k)).getName() + " ").getBytes()); } zipout.write(new String("</a>. Information we have got: NMR spectra").getBytes()); Vector spectra = mol.selectSpectra(); for (int k = 0; k < spectra.size(); k++) { zipout.write(new String(((DBSpectrum) spectra.get(k)).getDBSpectrumType().getName() + ", ").getBytes()); } if (mol.hasAny3d()) zipout.write(new String("3D coordinates, ").getBytes()); zipout.write(new String("File formats: CML, mol, png, jpeg").getBytes()); zipout.write(new String("</p>").getBytes()); } zipout.write(new String("</body></html>").getBytes()); zipout.closeEntry(); zipout.close(); InputStream is = new ByteArrayInputStream(baos.toByteArray()); byte[] buf = new byte[32 * 1024]; int nRead = 0; while ((nRead = is.read(buf)) != -1) { outstream.write(buf, 0, nRead); } } else if (action.equals("predictor")) { if (req.getParameter("symbol") == null) { res.setContentType("text/plain"); out = res.getWriter(); out.write("please give the symbol to create the predictor for in the request with symbol=X (e. g. symbol=C"); } res.setContentType("application/zip"); outstream = res.getOutputStream(); ByteArrayOutputStream baos = new ByteArrayOutputStream(); ZipOutputStream zipout = new ZipOutputStream(baos); String filename = "org/openscience/nmrshiftdb/PredictionTool.class"; zipout.putNextEntry(new ZipEntry(filename)); JarInputStream jip = new JarInputStream(new FileInputStream(ServletUtils.expandRelative(getServletConfig(), "/WEB-INF/lib/nmrshiftdb-lib.jar"))); JarEntry entry = jip.getNextJarEntry(); while (entry.getName().indexOf("PredictionTool.class") == -1) { entry = jip.getNextJarEntry(); } for (int i = 0; i < entry.getSize(); i++) { zipout.write(jip.read()); } zipout.closeEntry(); zipout.putNextEntry(new ZipEntry("nmrshiftdb.csv")); int i = 0; org.apache.turbine.util.db.pool.DBConnection conn = TurbineDB.getConnection(); HashMap mapsmap = new HashMap(); while (true) { Statement stmt = conn.createStatement(); ResultSet rs = stmt.executeQuery("select HOSE_CODE, VALUE, SYMBOL from HOSE_CODES where CONDITION_TYPE='m' and WITH_RINGS=0 and SYMBOL='" + req.getParameter("symbol") + "' limit " + (i * 1000) + ", 1000"); int m = 0; while (rs.next()) { String code = rs.getString(1); Double value = new Double(rs.getString(2)); String symbol = rs.getString(3); if (mapsmap.get(symbol) == null) { mapsmap.put(symbol, new HashMap()); } for (int spheres = 6; spheres > 0; spheres--) { StringBuffer hoseCodeBuffer = new StringBuffer(); StringTokenizer st = new StringTokenizer(code, "()/"); for (int k = 0; k < spheres; k++) { if (st.hasMoreTokens()) { String partcode = st.nextToken(); hoseCodeBuffer.append(partcode); } if (k == 0) { hoseCodeBuffer.append("("); } else if (k == 3) { hoseCodeBuffer.append(")"); } else { hoseCodeBuffer.append("/"); } } String hoseCode = hoseCodeBuffer.toString(); if (((HashMap) mapsmap.get(symbol)).get(hoseCode) == null) { ((HashMap) mapsmap.get(symbol)).put(hoseCode, new ArrayList()); } ((ArrayList) ((HashMap) mapsmap.get(symbol)).get(hoseCode)).add(value); } m++; } i++; stmt.close(); if (m == 0) break; } Set keySet = mapsmap.keySet(); Iterator it = keySet.iterator(); while (it.hasNext()) { String symbol = (String) it.next(); HashMap hosemap = ((HashMap) mapsmap.get(symbol)); Set keySet2 = hosemap.keySet(); Iterator it2 = keySet2.iterator(); while (it2.hasNext()) { String hoseCode = (String) it2.next(); ArrayList list = ((ArrayList) hosemap.get(hoseCode)); double[] values = new double[list.size()]; for (int k = 0; k < list.size(); k++) { values[k] = ((Double) list.get(k)).doubleValue(); } zipout.write(new String(symbol + "|" + hoseCode + "|" + Statistics.minimum(values) + "|" + Statistics.average(values) + "|" + Statistics.maximum(values) + "\r\n").getBytes()); } } zipout.closeEntry(); zipout.close(); InputStream is = new ByteArrayInputStream(baos.toByteArray()); byte[] buf = new byte[32 * 1024]; int nRead = 0; i = 0; while ((nRead = is.read(buf)) != -1) { outstream.write(buf, 0, nRead); } } else if (action.equals("exportspec") || action.equals("exportmol")) { if (spectrumId > -1) spectrum = DBSpectrumPeer.retrieveByPK(new NumberKey(spectrumId)); else spectrum = DBSpectrumPeer.retrieveByPK(new NumberKey(req.getParameter("spectrumid"))); export = new Export(spectrum); } else if (action.equals("exportmdl")) { res.setContentType("text/plain"); outstream = res.getOutputStream(); DBMolecule mol = DBMoleculePeer.retrieveByPK(new NumberKey(req.getParameter("moleculeid"))); outstream.write(mol.getStructureFile(Integer.parseInt(req.getParameter("coordsetid")), false).getBytes()); } else if (action.equals("exportlastinputs")) { format = action; } else if (action.equals("printpredict")) { res.setContentType("text/html"); out = res.getWriter(); HttpSession session = req.getSession(); VelocityContext context = PredictPortlet.getContext(session, true, true, new StringBuffer(), getServletConfig(), req, true); StringWriter w = new StringWriter(); Velocity.mergeTemplate("predictprint.vm", "ISO-8859-1", context, w); out.println(w.toString()); } else { res.setContentType("text/html"); out = res.getWriter(); out.println("No valid action"); } if (format == null) format = ""; if (format.equals("pdf") || format.equals("rtf")) { res.setContentType("application/" + format); out = res.getWriter(); } if (format.equals("docbook")) { res.setContentType("application/zip"); outstream = res.getOutputStream(); } if (format.equals("svg")) { res.setContentType("image/x-svg"); out = res.getWriter(); } if (format.equals("tiff")) { res.setContentType("image/tiff"); outstream = res.getOutputStream(); } if (format.equals("jpeg")) { res.setContentType("image/jpeg"); outstream = res.getOutputStream(); } if (format.equals("png")) { res.setContentType("image/png"); outstream = res.getOutputStream(); } if (format.equals("mdl") || format.equals("txt") || format.equals("cml") || format.equals("cmlboth") || format.indexOf("exsection") == 0) { res.setContentType("text/plain"); out = res.getWriter(); } if (format.equals("simplehtml") || format.equals("exportlastinputs")) { res.setContentType("text/html"); out = res.getWriter(); } if (action.equals("exportlastinputs")) { int numbertoexport = 4; if (req.getParameter("numbertoexport") != null) { try { numbertoexport = Integer.parseInt(req.getParameter("numbertoexport")); if (numbertoexport < 1 || numbertoexport > 20) throw new NumberFormatException("Number to small/large"); } catch (NumberFormatException ex) { out.println("The parameter <code>numbertoexport</code>must be an integer from 1 to 20"); } } NmrshiftdbUser user = null; try { user = NmrshiftdbUserPeer.getByName(req.getParameter("username")); } catch (NmrshiftdbException ex) { out.println("Seems <code>username</code> is not OK: " + ex.getMessage()); } if (user != null) { List l = NmrshiftdbUserPeer.executeQuery("SELECT LAST_DOWNLOAD_DATE FROM TURBINE_USER where LOGIN_NAME=\"" + user.getUserName() + "\";"); Date lastDownloadDate = ((Record) l.get(0)).getValue(1).asDate(); if (((new Date().getTime() - lastDownloadDate.getTime()) / 3600000) < 24) { out.println("Your last download was at " + lastDownloadDate + ". You may download your last inputs only once a day. Sorry for this, but we need to be carefull with resources. If you want to put your last inputs on your homepage best use some sort of cache (e. g. use wget for downlaod with crond and link to this static resource))!"); } else { NmrshiftdbUserPeer.executeStatement("UPDATE TURBINE_USER SET LAST_DOWNLOAD_DATE=NOW() where LOGIN_NAME=\"" + user.getUserName() + "\";"); Vector<String> parameters = new Vector<String>(); String query = "select distinct MOLECULE.MOLECULE_ID from MOLECULE, SPECTRUM where SPECTRUM.MOLECULE_ID = MOLECULE.MOLECULE_ID and SPECTRUM.REVIEW_FLAG =\"true\" and SPECTRUM.USER_ID=" + user.getUserId() + " order by MOLECULE.DATE desc;"; l = NmrshiftdbUserPeer.executeQuery(query); String url = javax.servlet.http.HttpUtils.getRequestURL(req).toString(); url = url.substring(0, url.length() - 17); for (int i = 0; i < numbertoexport; i++) { if (i == l.size()) break; DBMolecule mol = DBMoleculePeer.retrieveByPK(new NumberKey(((Record) l.get(i)).getValue(1).asInt())); parameters.add(new String("<a href=\"" + url + "/portal/pane0/Results?nmrshiftdbaction=showDetailsFromHome&molNumber=" + mol.getMoleculeId() + "\"><img src=\"" + javax.servlet.http.HttpUtils.getRequestURL(req).toString() + "?nmrshiftdbaction=exportmol&spectrumid=" + ((DBSpectrum) mol.getDBSpectrums().get(0)).getSpectrumId() + "&format=jpeg&size=150x150&backcolor=12632256\"></a>")); } VelocityContext context = new VelocityContext(); context.put("results", parameters); StringWriter w = new StringWriter(); Velocity.mergeTemplate("lateststructures.vm", "ISO-8859-1", context, w); out.println(w.toString()); } } } if (action.equals("exportspec")) { if (format.equals("txt")) { String lastsearchtype = req.getParameter("lastsearchtype"); if (lastsearchtype.equals(NmrshiftdbConstants.TOTALSPECTRUM) || lastsearchtype.equals(NmrshiftdbConstants.SUBSPECTRUM)) { List l = ParseUtils.parseSpectrumFromSpecFile(req.getParameter("lastsearchvalues")); spectrum.initSimilarity(l, lastsearchtype.equals(NmrshiftdbConstants.SUBSPECTRUM)); } Vector v = spectrum.getOptions(); DBMolecule mol = spectrum.getDBMolecule(); out.print(mol.getChemicalNamesAsOneString(false) + mol.getMolecularFormula(false) + "; " + mol.getMolecularWeight() + " Dalton\n\r"); out.print("\n\rAtom\t"); if (spectrum.getDBSpectrumType().getElementSymbol() == ("H")) out.print("Mult.\t"); out.print("Meas."); if (lastsearchtype.equals(NmrshiftdbConstants.TOTALSPECTRUM) || lastsearchtype.equals(NmrshiftdbConstants.SUBSPECTRUM)) { out.print("\tInput\tDiff"); } out.print("\n\r"); out.print("No.\t"); if (spectrum.getDBSpectrumType().getElementSymbol() == ("H")) out.print("\t"); out.print("Shift"); if (lastsearchtype.equals(NmrshiftdbConstants.TOTALSPECTRUM) || lastsearchtype.equals(NmrshiftdbConstants.SUBSPECTRUM)) { out.print("\tShift\tM-I"); } out.print("\n\r"); for (int i = 0; i < v.size(); i++) { out.print(((ValuesForVelocityBean) v.get(i)).getDisplayText() + "\t" + ((ValuesForVelocityBean) v.get(i)).getRange()); if (lastsearchtype.equals(NmrshiftdbConstants.TOTALSPECTRUM) || lastsearchtype.equals(NmrshiftdbConstants.SUBSPECTRUM)) { out.print("\t" + ((ValuesForVelocityBean) v.get(i)).getNameForElements() + "\t" + ((ValuesForVelocityBean) v.get(i)).getDelta()); } out.print("\n\r"); } } if (format.equals("simplehtml")) { String i1 = export.getImage(false, "jpeg", ServletUtils.expandRelative(this.getServletConfig(), "/nmrshiftdbhtml") + "/tmp/" + System.currentTimeMillis(), true); export.pictures[0] = new File(i1).getName(); String i2 = export.getImage(true, "jpeg", ServletUtils.expandRelative(this.getServletConfig(), "/nmrshiftdbhtml") + "/tmp/" + System.currentTimeMillis(), true); export.pictures[1] = new File(i2).getName(); String docbook = export.getHtml(); out.print(docbook); } if (format.equals("pdf") || format.equals("rtf")) { String svgSpec = export.getSpecSvg(400, 200); String svgspecfile = relativepath + "/tmp/" + System.currentTimeMillis() + "s.svg"; new FileOutputStream(svgspecfile).write(svgSpec.getBytes()); export.pictures[1] = svgspecfile; String molSvg = export.getMolSvg(true); String svgmolfile = relativepath + "/tmp/" + System.currentTimeMillis() + "m.svg"; new FileOutputStream(svgmolfile).write(molSvg.getBytes()); export.pictures[0] = svgmolfile; String docbook = export.getDocbook("pdf", "SVG"); TransformerFactory tFactory = TransformerFactory.newInstance(); Transformer transformer = tFactory.newTransformer(new StreamSource("file:" + GeneralUtils.getNmrshiftdbProperty("docbookxslpath", getServletConfig()) + "/fo/docbook.xsl")); ByteArrayOutputStream baos = new ByteArrayOutputStream(); transformer.transform(new StreamSource(new StringReader(docbook)), new StreamResult(baos)); FopFactory fopFactory = FopFactory.newInstance(); FOUserAgent foUserAgent = fopFactory.newFOUserAgent(); OutputStream out2 = new ByteArrayOutputStream(); Fop fop = fopFactory.newFop(format.equals("rtf") ? MimeConstants.MIME_RTF : MimeConstants.MIME_PDF, foUserAgent, out2); TransformerFactory factory = TransformerFactory.newInstance(); transformer = factory.newTransformer(); Source src = new StreamSource(new StringReader(baos.toString())); Result res2 = new SAXResult(fop.getDefaultHandler()); transformer.transform(src, res2); out.print(out2.toString()); } if (format.equals("docbook")) { String i1 = relativepath + "/tmp/" + System.currentTimeMillis() + ".svg"; new FileOutputStream(i1).write(export.getSpecSvg(300, 200).getBytes()); export.pictures[0] = new File(i1).getName(); String i2 = relativepath + "/tmp/" + System.currentTimeMillis() + ".svg"; new FileOutputStream(i2).write(export.getMolSvg(true).getBytes()); export.pictures[1] = new File(i2).getName(); String docbook = export.getDocbook("pdf", "SVG"); String docbookfile = relativepath + "/tmp/" + System.currentTimeMillis() + ".xml"; new FileOutputStream(docbookfile).write(docbook.getBytes()); ByteArrayOutputStream baos = export.makeZip(new String[] { docbookfile, i1, i2 }); outstream.write(baos.toByteArray()); } if (format.equals("svg")) { out.print(export.getSpecSvg(400, 200)); } if (format.equals("tiff") || format.equals("jpeg") || format.equals("png")) { InputStream is = new FileInputStream(export.getImage(false, format, relativepath + "/tmp/" + System.currentTimeMillis(), true)); byte[] buf = new byte[32 * 1024]; int nRead = 0; while ((nRead = is.read(buf)) != -1) { outstream.write(buf, 0, nRead); } } if (format.equals("cml")) { out.print(spectrum.getCmlSpect().toXML()); } if (format.equals("cmlboth")) { Element cmlElement = new Element("cml"); cmlElement.addAttribute(new Attribute("convention", "nmrshiftdb-convention")); cmlElement.setNamespaceURI("http://www.xml-cml.org/schema"); Element parent = spectrum.getDBMolecule().getCML(1, spectrum.getDBSpectrumType().getName().equals("1H")); nu.xom.Node cmldoc = parent.getChild(0); ((Element) cmldoc).setNamespaceURI("http://www.xml-cml.org/schema"); parent.removeChildren(); cmlElement.appendChild(cmldoc); Element parentspec = spectrum.getCmlSpect(); Node spectrumel = parentspec.getChild(0); parentspec.removeChildren(); cmlElement.appendChild(spectrumel); ((Element) spectrumel).setNamespaceURI("http://www.xml-cml.org/schema"); out.write(cmlElement.toXML()); } if (format.indexOf("exsection") == 0) { StringTokenizer st = new StringTokenizer(format, "-"); st.nextToken(); String template = st.nextToken(); Criteria crit = new Criteria(); crit.add(DBSpectrumPeer.USER_ID, spectrum.getUserId()); Vector v = spectrum.getDBMolecule().getDBSpectrums(crit); VelocityContext context = new VelocityContext(); context.put("spectra", v); context.put("molecule", spectrum.getDBMolecule()); StringWriter w = new StringWriter(); Velocity.mergeTemplate("exporttemplates/" + template, "ISO-8859-1", context, w); out.write(w.toString()); } } if (action.equals("exportmol")) { int width = -1; int height = -1; if (req.getParameter("size") != null) { StringTokenizer st = new StringTokenizer(req.getParameter("size"), "x"); width = Integer.parseInt(st.nextToken()); height = Integer.parseInt(st.nextToken()); } boolean shownumbers = true; if (req.getParameter("shownumbers") != null && req.getParameter("shownumbers").equals("false")) { shownumbers = false; } if (req.getParameter("backcolor") != null) { export.backColor = new Color(Integer.parseInt(req.getParameter("backcolor"))); } if (req.getParameter("markatom") != null) { export.selected = Integer.parseInt(req.getParameter("markatom")) - 1; } if (format.equals("svg")) { out.print(export.getMolSvg(true)); } if (format.equals("tiff") || format.equals("jpeg") || format.equals("png")) { InputStream is = new FileInputStream(export.getImage(true, format, relativepath + "/tmp/" + System.currentTimeMillis(), width, height, shownumbers, null)); byte[] buf = new byte[32 * 1024]; int nRead = 0; while ((nRead = is.read(buf)) != -1) { outstream.write(buf, 0, nRead); } } if (format.equals("mdl")) { out.println(spectrum.getDBMolecule().getStructureFile(1, false)); } if (format.equals("cml")) { out.println(spectrum.getDBMolecule().getCMLString(1)); } } if (out != null) out.flush(); else outstream.flush(); } catch (Exception ex) { ex.printStackTrace(); out.print(GeneralUtils.logError(ex, "NmrshiftdbServlet", null, true)); out.flush(); } } | 18,596 |
0 | public APIResponse delete(String id) throws Exception { APIResponse response = new APIResponse(); connection = (HttpURLConnection) new URL(url + "/api/transaction/delete/" + id).openConnection(); connection.setRequestMethod("DELETE"); connection.setConnectTimeout(TIMEOUT); connection.connect(); if (connection.getResponseCode() == HttpURLConnection.HTTP_OK) { response.setDone(true); response.setMessage("Transaction Deleted!"); } else { response.setDone(false); response.setMessage("Delete Transaction Error Code: Http (" + connection.getResponseCode() + ")"); } connection.disconnect(); return response; } | private Element returnAnnoBody(final String url) { DOMParser parser = new DOMParser(); try { URL bodyURL = new URL(url); URLConnection url_con = bodyURL.openConnection(); if (useAuthorization()) { url_con.setRequestProperty("Authorization", "Basic " + getBasicAuthorizationString()); } InputStream content = url_con.getInputStream(); InputSource insource = new InputSource(content); parser.parse(insource); } catch (SAXException e) { e.printStackTrace(); return null; } catch (IOException e) { e.printStackTrace(); return null; } Document annodoc = parser.getDocument(); return annodoc.getDocumentElement(); } | 18,597 |
0 | public int unindexRecord(String uuid) throws SQLException, CatalogIndexException { Connection con = null; boolean autoCommit = true; PreparedStatement st = null; int nRows = 0; StringSet fids = new StringSet(); if (cswRemoteRepository.isActive()) { StringSet uuids = new StringSet(); uuids.add(uuid); fids = queryFileIdentifiers(uuids); } try { con = returnConnection().getJdbcConnection(); autoCommit = con.getAutoCommit(); con.setAutoCommit(false); String sSql = "DELETE FROM " + getResourceDataTableName() + " WHERE DOCUUID=?"; logExpression(sSql); st = con.prepareStatement(sSql); st.setString(1, uuid); nRows = st.executeUpdate(); con.commit(); } catch (SQLException ex) { if (con != null) { con.rollback(); } throw ex; } finally { closeStatement(st); if (con != null) { con.setAutoCommit(autoCommit); } } CatalogIndexAdapter indexAdapter = getCatalogIndexAdapter(); if (indexAdapter != null) { indexAdapter.deleteDocument(uuid); if (cswRemoteRepository.isActive()) { if (fids.size() > 0) cswRemoteRepository.onRecordsDeleted(fids); } } return nRows; } | private Source getStylesheetSource(String stylesheetResource) throws ApplicationContextException { if (LOG.isDebugEnabled()) { LOG.debug("Loading XSLT stylesheet from " + stylesheetResource); } try { URL url = this.getClass().getClassLoader().getResource(stylesheetResource); String urlPath = url.toString(); String systemId = urlPath.substring(0, urlPath.lastIndexOf('/') + 1); return new StreamSource(url.openStream(), systemId); } catch (IOException e) { throw new RuntimeException("Can't load XSLT stylesheet from " + stylesheetResource, e); } } | 18,598 |
1 | public boolean restore() { try { File sd = Environment.getExternalStorageDirectory(); File data = Environment.getDataDirectory(); if (sd.canWrite()) { String currentDBPath = "/Android/bluebox.bak"; String backupDBPath = "/data/android.bluebox/databases/bluebox.db"; File currentDB = new File(sd, currentDBPath); File backupDB = new File(data, backupDBPath); if (currentDB.exists()) { FileChannel src = new FileInputStream(currentDB).getChannel(); FileChannel dst = new FileOutputStream(backupDB).getChannel(); dst.transferFrom(src, 0, src.size()); src.close(); dst.close(); return true; } } } catch (FileNotFoundException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } return false; } | public static void copy(File src, File dest) throws IOException { if (!src.exists()) { throw new IOException(StaticUtils.format(OStrings.getString("LFC_ERROR_FILE_DOESNT_EXIST"), new Object[] { src.getAbsolutePath() })); } FileInputStream fis = new FileInputStream(src); dest.getParentFile().mkdirs(); FileOutputStream fos = new FileOutputStream(dest); byte[] b = new byte[BUFSIZE]; int readBytes; while ((readBytes = fis.read(b)) > 0) fos.write(b, 0, readBytes); fis.close(); fos.close(); } | 18,599 |
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