label int64 0 1 | func1 stringlengths 173 53.1k | func2 stringlengths 173 53.1k | id int64 0 901k |
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1 | public ServiceAdapterIfc deploy(String session, String name, byte jarBytes[], String jarName, String serviceClass, String serviceInterface) throws RemoteException, MalformedURLException, StartServiceException, SessionException { try { File jarFile = new File(jarName); jarName = jarFile.getName(); String jarName2 = jarName; jarFile = new File(jarName2); int n = 0; while (jarFile.exists()) { jarName2 = jarName + n++; jarFile = new File(jarName2); } FileOutputStream fos = new FileOutputStream(jarName2); IOUtils.copy(new ByteArrayInputStream(jarBytes), fos); SCClassLoader cl = new SCClassLoader(new URL[] { new URL("file://" + jarFile.getAbsolutePath()) }, getMasterNode().getSCClassLoaderCounter()); return startService(session, name, serviceClass, serviceInterface, cl); } catch (SessionException e) { throw e; } catch (Exception e) { throw new StartServiceException("Could not deploy service: " + e.getMessage(), e); } } | private void doTask() { try { log("\n\n\n\n\n\n\n\n\n"); log(" ================================================="); log(" = Starting PSCafePOS ="); log(" ================================================="); log(" = An open source point of sale system ="); log(" = for educational organizations. ="); log(" ================================================="); log(" = General Information ="); log(" = http://pscafe.sourceforge.net ="); log(" = Free Product Support ="); log(" = http://www.sourceforge.net/projects/pscafe ="); log(" ================================================="); log(" = License Overview ="); log(" ================================================="); log(" = PSCafePOS is a POS System for Schools ="); log(" = Copyright (C) 2007 Charles Syperski ="); log(" = ="); log(" = This program is free software; you can ="); log(" = redistribute it and/or modify it under the ="); log(" = terms of the GNU General Public License as ="); log(" = published by the Free Software Foundation; ="); log(" = either version 2 of the License, or any later ="); log(" = version. ="); log(" = ="); log(" = This program is distributed in the hope that ="); log(" = it will be useful, but WITHOUT ANY WARRANTY; ="); log(" = without even the implied warranty of ="); log(" = MERCHANTABILITY or FITNESS FOR A PARTICULAR ="); log(" = PURPOSE. ="); log(" = ="); log(" = See the GNU General Public License for more ="); log(" = details. ="); log(" = ="); log(" = You should have received a copy of the GNU ="); log(" = General Public License along with this ="); log(" = program; if not, write to the ="); log(" = ="); log(" = Free Software Foundation, Inc. ="); log(" = 59 Temple Place, Suite 330 ="); log(" = Boston, MA 02111-1307 USA ="); log(" ================================================="); log(" = If you have any questions of comments please ="); log(" = let us know at http://pscafe.sourceforge.net ="); log(" ================================================="); pause(); File settings; if (blAltSettings) { System.out.println("\n + Alternative path specified at run time:"); System.out.println(" Path: " + strAltPath); settings = new File(strAltPath); } else { settings = new File("etc" + File.separatorChar + "settings.dbp"); } System.out.print("\n + Checking for existance of settings..."); boolean blGo = false; if (settings.exists() && settings.canRead()) { log("[OK]"); blGo = true; if (forceConfig) { System.out.print("\n + Running Config Wizard (at user request)..."); Process pp = Runtime.getRuntime().exec("java -cp . PSSettingWizard etc" + File.separatorChar + "settings.dbp"); InputStream stderr = pp.getErrorStream(); InputStream stdin = pp.getInputStream(); InputStreamReader isr = new InputStreamReader(stdin); BufferedReader br = new BufferedReader(isr); String ln = null; while ((ln = br.readLine()) != null) System.out.println(" " + ln); pp.waitFor(); } } else { log("[FAILED]"); settings = new File("etc" + File.separatorChar + "settings.dbp.firstrun"); System.out.print("\n + Checking if this is the first run... "); if (settings.exists() && settings.canRead()) { log("[FOUND]"); File toFile = new File("etc" + File.separatorChar + "settings.dbp"); FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(settings); to = new FileOutputStream(toFile); byte[] buffer = new byte[4096]; int bytes_read; while ((bytes_read = from.read(buffer)) != -1) { to.write(buffer, 0, bytes_read); } if (toFile.exists() && toFile.canRead()) { settings = null; settings = new File("etc" + File.separatorChar + "settings.dbp"); } System.out.print("\n + Running Settings Wizard... "); try { Process p = Runtime.getRuntime().exec("java PSSettingWizard etc" + File.separatorChar + "settings.dbp"); InputStream stderr = p.getErrorStream(); InputStream stdin = p.getInputStream(); InputStreamReader isr = new InputStreamReader(stdin); BufferedReader br = new BufferedReader(isr); String ln = null; while ((ln = br.readLine()) != null) System.out.println(" " + ln); p.waitFor(); log("[OK]"); if (p.exitValue() == 0) blGo = true; } catch (InterruptedException i) { System.err.println(i.getMessage()); } } catch (Exception ex) { System.err.println(ex.getMessage()); } finally { if (from != null) try { from.close(); } catch (IOException e) { ; } if (to != null) try { to.close(); } catch (IOException e) { ; } } } else { settings = null; settings = new File("etc" + File.separatorChar + "settings.dbp"); DBSettingsWriter writ = new DBSettingsWriter(); writ.writeFile(new DBSettings(), settings); blGo = true; } } if (blGo) { String cp = "."; try { File classpath = new File("lib"); File[] subFiles = classpath.listFiles(); for (int i = 0; i < subFiles.length; i++) { if (subFiles[i].isFile()) { cp += File.pathSeparatorChar + "lib" + File.separatorChar + subFiles[i].getName() + ""; } } } catch (Exception e) { System.err.println(e.getMessage()); } try { boolean blExecutePOS = false; System.out.print("\n + Checking runtime settings... "); DBSettings info = null; if (settings == null) settings = new File("etc" + File.separatorChar + "settings.dbp"); if (settings.exists() && settings.canRead()) { DBSettingsWriter writ = new DBSettingsWriter(); info = (DBSettings) writ.loadSettingsDB(settings); if (info != null) { blExecutePOS = true; } } if (blExecutePOS) { log("[OK]"); String strSSL = ""; String strSSLDebug = ""; if (info != null) { debug = info.get(DBSettings.MAIN_DEBUG).compareTo("1") == 0; if (debug) log(" * Debug Mode is ON"); else log(" * Debug Mode is OFF"); if (info.get(DBSettings.POS_SSLENABLED).compareTo("1") == 0) { strSSL = "-Djavax.net.ssl.keyStore=" + info.get(DBSettings.POS_SSLKEYSTORE) + " -Djavax.net.ssl.keyStorePassword=pscafe -Djavax.net.ssl.trustStore=" + info.get(DBSettings.POS_SSLTRUSTSTORE) + " -Djavax.net.ssl.trustStorePassword=pscafe"; log(" * Using SSL"); debug(" " + strSSL); if (info.get(DBSettings.POS_SSLDEBUG).compareTo("1") == 0) { strSSLDebug = "-Djavax.net.debug=all"; log(" * SSL Debugging enabled"); debug(" " + strSSLDebug); } } } String strPOSRun = "java -cp " + cp + " " + strSSL + " " + strSSLDebug + " POSDriver " + settings.getPath(); debug(strPOSRun); System.out.print("\n + Running PSCafePOS... "); Process pr = Runtime.getRuntime().exec(strPOSRun); System.out.print("[OK]\n\n"); InputStream stderr = pr.getErrorStream(); InputStream stdin = pr.getInputStream(); InputStreamReader isr = new InputStreamReader(stdin); InputStreamReader isre = new InputStreamReader(stderr); BufferedReader br = new BufferedReader(isr); BufferedReader bre = new BufferedReader(isre); String line = null; String lineError = null; log(" ================================================="); log(" = Output from PSCafePOS System ="); log(" ================================================="); while ((line = br.readLine()) != null || (lineError = bre.readLine()) != null) { if (line != null) System.out.println(" [PSCafePOS]" + line); if (lineError != null) System.out.println(" [ERR]" + lineError); } pr.waitFor(); log(" ================================================="); log(" = End output from PSCafePOS System ="); log(" = PSCafePOS has exited ="); log(" ================================================="); } else { log("[Failed]"); } } catch (Exception i) { log(i.getMessage()); i.printStackTrace(); } } } catch (Exception e) { log(e.getMessage()); } } | 18,700 |
1 | public static int fileUpload(long lngFileSize, InputStream inputStream, String strFilePath, String strFileName) throws IOException { String SEPARATOR = System.getProperty("file.separator"); if (lngFileSize > (10 * 1024 * 1024)) { return -1; } InputStream is = null; FileOutputStream fos = null; try { File dir = new File(strFilePath); if (!dir.exists()) dir.mkdirs(); is = inputStream; fos = new FileOutputStream(new File(strFilePath + SEPARATOR + strFileName)); IOUtils.copy(is, fos); } catch (Exception ex) { return -2; } finally { try { fos.close(); is.close(); } catch (Exception ex2) { } } return 0; } | public void _saveWebAsset(ActionRequest req, ActionResponse res, PortletConfig config, ActionForm form, User user, String subcmd) throws WebAssetException, Exception { long maxsize = 50; long maxwidth = 3000; long maxheight = 3000; long minheight = 10; ActionRequestImpl reqImpl = (ActionRequestImpl) req; HttpServletRequest httpReq = reqImpl.getHttpServletRequest(); try { UploadPortletRequest uploadReq = PortalUtil.getUploadPortletRequest(req); String parent = ParamUtil.getString(req, "parent"); int countFiles = ParamUtil.getInteger(req, "countFiles"); int fileCounter = 0; Folder folder = (Folder) InodeFactory.getInode(parent, Folder.class); _checkUserPermissions(folder, user, PERMISSION_WRITE); String userId = user.getUserId(); String customMessage = "Some file does not match the filters specified by the folder: "; boolean filterError = false; for (int k = 0; k < countFiles; k++) { File file = new File(); String title = ParamUtil.getString(req, "title" + k); String friendlyName = ParamUtil.getString(req, "friendlyName" + k); Date publishDate = new Date(); String fileName = ParamUtil.getString(req, "fileName" + k); fileName = checkMACFileName(fileName); if (!FolderFactory.matchFilter(folder, fileName)) { customMessage += fileName + ", "; filterError = true; continue; } if (fileName.length() > 0) { String mimeType = FileFactory.getMimeType(fileName); String URI = folder.getPath() + fileName; String suffix = UtilMethods.getFileExtension(fileName); file.setTitle(title); file.setFileName(fileName); file.setFriendlyName(friendlyName); file.setPublishDate(publishDate); file.setModUser(userId); InodeFactory.saveInode(file); String filePath = FileFactory.getRealAssetsRootPath(); new java.io.File(filePath).mkdir(); java.io.File uploadedFile = uploadReq.getFile("uploadedFile" + k); Logger.debug(this, "bytes" + uploadedFile.length()); file.setSize((int) uploadedFile.length() - 2); file.setMimeType(mimeType); Host host = HostFactory.getCurrentHost(httpReq); Identifier ident = IdentifierFactory.getIdentifierByURI(URI, host); String message = ""; if ((FileFactory.existsFileName(folder, fileName))) { InodeFactory.deleteInode(file); message = "The uploaded file " + fileName + " already exists in this folder"; SessionMessages.add(req, "custommessage", message); } else { String fileInodePath = String.valueOf(file.getInode()); if (fileInodePath.length() == 1) { fileInodePath = fileInodePath + "0"; } fileInodePath = fileInodePath.substring(0, 1) + java.io.File.separator + fileInodePath.substring(1, 2); new java.io.File(filePath + java.io.File.separator + fileInodePath.substring(0, 1)).mkdir(); new java.io.File(filePath + java.io.File.separator + fileInodePath).mkdir(); java.io.File f = new java.io.File(filePath + java.io.File.separator + fileInodePath + java.io.File.separator + file.getInode() + "." + suffix); java.io.FileOutputStream fout = new java.io.FileOutputStream(f); FileChannel outputChannel = fout.getChannel(); FileChannel inputChannel = new java.io.FileInputStream(uploadedFile).getChannel(); outputChannel.transferFrom(inputChannel, 0, inputChannel.size()); outputChannel.force(false); outputChannel.close(); inputChannel.close(); Logger.debug(this, "SaveFileAction New File in =" + filePath + java.io.File.separator + fileInodePath + java.io.File.separator + file.getInode() + "." + suffix); if (suffix.equals("jpg") || suffix.equals("gif")) { com.dotmarketing.util.Thumbnail.resizeImage(filePath + java.io.File.separator + fileInodePath + java.io.File.separator, String.valueOf(file.getInode()), suffix); int height = javax.imageio.ImageIO.read(f).getHeight(); file.setHeight(height); Logger.debug(this, "File height=" + height); int width = javax.imageio.ImageIO.read(f).getWidth(); file.setWidth(width); Logger.debug(this, "File width=" + width); long size = (f.length() / 1024); WebAssetFactory.createAsset(file, userId, folder); } else { WebAssetFactory.createAsset(file, userId, folder); } WorkingCache.addToWorkingAssetToCache(file); _setFilePermissions(folder, file, user); fileCounter += 1; if ((subcmd != null) && subcmd.equals(com.dotmarketing.util.Constants.PUBLISH)) { try { PublishFactory.publishAsset(file, httpReq); if (fileCounter > 1) { SessionMessages.add(req, "message", "message.file_asset.save"); } else { SessionMessages.add(req, "message", "message.fileupload.save"); } } catch (WebAssetException wax) { Logger.error(this, wax.getMessage(), wax); SessionMessages.add(req, "error", "message.webasset.published.failed"); } } } } } if (filterError) { customMessage = customMessage.substring(0, customMessage.lastIndexOf(",")); SessionMessages.add(req, "custommessage", customMessage); } } catch (IOException e) { Logger.error(this, "Exception saving file: " + e.getMessage()); throw new ActionException(e.getMessage()); } } | 18,701 |
1 | private final void saveCopy(String source, String destination) { BufferedInputStream from = null; BufferedOutputStream to = null; try { from = new BufferedInputStream(new FileInputStream(source)); to = new BufferedOutputStream(new FileOutputStream(destination)); byte[] buffer = new byte[65535]; int bytes_read; while ((bytes_read = from.read(buffer)) != -1) to.write(buffer, 0, bytes_read); } catch (Exception e) { LogWriter.writeLog("Exception " + e + " copying file"); } try { to.close(); from.close(); } catch (Exception e) { LogWriter.writeLog("Exception " + e + " closing files"); } to = null; from = null; } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 18,702 |
0 | public static void doVersionCheck(View view) { view.showWaitCursor(); try { URL url = new URL(jEdit.getProperty("version-check.url")); InputStream in = url.openStream(); BufferedReader bin = new BufferedReader(new InputStreamReader(in)); String line; String develBuild = null; String stableBuild = null; while ((line = bin.readLine()) != null) { if (line.startsWith(".build")) develBuild = line.substring(6).trim(); else if (line.startsWith(".stablebuild")) stableBuild = line.substring(12).trim(); } bin.close(); if (develBuild != null && stableBuild != null) { doVersionCheck(view, stableBuild, develBuild); } } catch (IOException e) { String[] args = { jEdit.getProperty("version-check.url"), e.toString() }; GUIUtilities.error(view, "read-error", args); } view.hideWaitCursor(); } | public static void copy(String fromFileName, String toFileName) throws IOException { File fromFile = new File(fromFileName); File toFile = new File(toFileName); if (!fromFile.exists()) throw new IOException("FileCopy: " + "no such source file: " + fromFileName); if (!fromFile.isFile()) throw new IOException("FileCopy: " + "can't copy directory: " + fromFileName); if (!fromFile.canRead()) throw new IOException("FileCopy: " + "source file is unreadable: " + fromFileName); if (toFile.isDirectory()) toFile = new File(toFile, fromFile.getName()); if (toFile.exists()) { if (!toFile.canWrite()) throw new IOException("FileCopy: " + "destination file is unwriteable: " + toFileName); } else { String parent = toFile.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) dir.mkdir(); if (dir.isFile()) throw new IOException("FileCopy: " + "destination is not a directory: " + parent); if (!dir.canWrite()) throw new IOException("FileCopy: " + "destination directory is unwriteable: " + parent); } FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(fromFile); to = new FileOutputStream(toFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead); } finally { if (from != null) try { from.close(); } catch (IOException e) { ; } if (to != null) try { to.close(); } catch (IOException e) { ; } } } | 18,703 |
0 | private boolean getCached(Get g) throws IOException { boolean ret = false; File f = getCachedFile(g); if (f.exists()) { InputStream is = null; OutputStream os = null; try { is = new FileInputStream(f); os = new FileOutputStream(getDestFile(g)); int read; byte[] buffer = new byte[4096]; while ((read = is.read(buffer)) > 0) { os.write(buffer, 0, read); } ret = true; } finally { if (is != null) is.close(); if (os != null) os.close(); is = null; os = null; } } return ret; } | private PluginInfo loadPluginInfo(URL filename) throws PluginNotFoundException { if (filename == null) return null; BufferedReader in = null; InputStream is = null; String mainClass = null; String u = filename.toString(); PluginInfo pi = new PluginInfo(); URL url; try { url = new URL("jar:" + u + "!/"); } catch (MalformedURLException mue) { throw new PluginNotFoundException(mue); } pi.setURL(filename); HashMap names = new HashMap(); boolean seemsOK = false; for (int tries = 0; (tries <= 5) && (!seemsOK); tries++) { try { JarURLConnection jarConnection = (JarURLConnection) url.openConnection(); jarConnection.setUseCaches(false); JarFile jf = jarConnection.getJarFile(); is = jf.getInputStream(jf.getJarEntry("META-INF/MANIFEST.MF")); in = new BufferedReader(new InputStreamReader(is)); String line; while ((line = in.readLine()) != null) { if (line.startsWith("Frostplugin-Main-Class: ")) { mainClass = line.substring("Frostplugin-Main-Class: ".length()).trim(); pi.setMainClass(mainClass); logger.log(Level.SEVERE, "Found plugin main class " + mainClass + " from manifest"); } } is = jf.getInputStream(jf.getJarEntry("pluginname.properties")); in = new BufferedReader(new InputStreamReader(is)); while ((line = in.readLine()) != null) { if (line.startsWith("#")) { continue; } if (line.length() == 0) { continue; } String[] sa = line.split("=", 2); names.put(sa[0], sa[1]); pi.setPluginNames(names); } seemsOK = true; } catch (Exception e) { if (tries >= 5) throw new PluginNotFoundException("Initialization error:" + filename, e); try { Thread.sleep(100); } catch (Exception ee) { } } finally { try { if (is != null) is.close(); if (in != null) in.close(); } catch (IOException ioe) { } } } return pi; } | 18,704 |
1 | private int resourceToString(String aFile, StringBuffer aBuffer) { int cols = 0; URL url = getClass().getResource(aFile); try { BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream())); String line = ""; do { line = in.readLine(); if (line != null) { if (line.length() > cols) cols = line.length(); aBuffer.append(line); aBuffer.append('\n'); } } while (line != null); } catch (IOException e) { e.printStackTrace(); } return cols; } | private Image retrievePdsImage(double lat, double lon) { imageDone = false; try { StringBuffer urlBuff = new StringBuffer(psdUrl + psdCgi + "?"); urlBuff.append("DATA_SET_NAME=" + dataSet); urlBuff.append("&VERSION=" + version); urlBuff.append("&PIXEL_TYPE=" + pixelType); urlBuff.append("&PROJECTION=" + projection); urlBuff.append("&STRETCH=" + stretch); urlBuff.append("&GRIDLINE_FREQUENCY=" + gridlineFrequency); urlBuff.append("&SCALE=" + URLEncoder.encode(scale)); urlBuff.append("&RESOLUTION=" + resolution); urlBuff.append("&LATBOX=" + latbox); urlBuff.append("&LONBOX=" + lonbox); urlBuff.append("&BANDS_SELECTED=" + bandsSelected); urlBuff.append("&LAT=" + lat); urlBuff.append("&LON=" + lon); URL url = new URL(urlBuff.toString()); BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream())); String result = null; String line; String imageSrc; int count = 0; while ((line = in.readLine()) != null) { if (count == 6) result = line; count++; } int startIndex = result.indexOf("<TH COLSPAN=2 ROWSPAN=2><IMG SRC = \"") + 36; int endIndex = result.indexOf("\"", startIndex); imageSrc = result.substring(startIndex, endIndex); URL imageUrl = new URL(imageSrc); return (Toolkit.getDefaultToolkit().getImage(imageUrl)); } catch (MalformedURLException e) { } catch (IOException e) { } return null; } | 18,705 |
1 | private void fileCopy(File filename) throws IOException { if (this.stdOut) { this.fileDump(filename); return; } File source_file = new File(spoolPath + "/" + filename); File destination_file = new File(copyPath + "/" + filename); FileInputStream source = null; FileOutputStream destination = null; byte[] buffer; int bytes_read; try { if (!source_file.exists() || !source_file.isFile()) throw new FileCopyException("no such source file: " + source_file); if (!source_file.canRead()) throw new FileCopyException("source file is unreadable: " + source_file); if (destination_file.exists()) { if (destination_file.isFile()) { BufferedReader in = new BufferedReader(new InputStreamReader(System.in)); if (!destination_file.canWrite()) throw new FileCopyException("destination file is unwriteable: " + destination_file); if (!this.overwrite) { System.out.print("File " + destination_file + " already exists. Overwrite? (Y/N): "); System.out.flush(); if (!in.readLine().toUpperCase().equals("Y")) throw new FileCopyException("copy cancelled."); } } else throw new FileCopyException("destination is not a file: " + destination_file); } else { File parentdir = parent(destination_file); if (!parentdir.exists()) throw new FileCopyException("destination directory doesn't exist: " + destination_file); if (!parentdir.canWrite()) throw new FileCopyException("destination directory is unwriteable: " + destination_file); } source = new FileInputStream(source_file); destination = new FileOutputStream(destination_file); buffer = new byte[1024]; while ((bytes_read = source.read(buffer)) != -1) { destination.write(buffer, 0, bytes_read); } System.out.println("File " + filename + " successfull copied to " + destination_file); if (this.keep == false && source_file.isFile()) { try { source.close(); } catch (Exception e) { } if (source_file.delete()) { new File(this.spoolPath + "/info/" + filename + ".desc").delete(); } } } finally { if (source != null) try { source.close(); } catch (IOException e) { } if (destination != null) try { destination.flush(); } catch (IOException e) { } if (destination != null) try { destination.close(); } catch (IOException e) { } } } | public static void copyFile(File file, String pathExport) throws IOException { File out = new File(pathExport); FileChannel sourceChannel = new FileInputStream(file).getChannel(); FileChannel destinationChannel = new FileOutputStream(out).getChannel(); sourceChannel.transferTo(0, sourceChannel.size(), destinationChannel); sourceChannel.close(); destinationChannel.close(); } | 18,706 |
1 | @Override protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { String contentId = req.getParameter(CONTENT_ID); String contentType = req.getParameter(CONTENT_TYPE); if (contentId == null || contentType == null) { resp.sendError(HttpServletResponse.SC_BAD_REQUEST, "Content id or content type not specified"); return; } try { switch(ContentType.valueOf(contentType)) { case IMAGE: resp.setContentType("image/jpeg"); break; case AUDIO: resp.setContentType("audio/mp3"); break; case VIDEO: resp.setContentType("video/mpeg"); break; default: throw new IllegalStateException("Invalid content type specified"); } } catch (IllegalArgumentException e) { resp.sendError(HttpServletResponse.SC_BAD_REQUEST, "Invalid content type specified"); return; } String baseUrl = this.getServletContext().getInitParameter(BASE_URL); URL url = new URL(baseUrl + "/" + contentType.toLowerCase() + "/" + contentId); URLConnection conn = url.openConnection(); resp.setContentLength(conn.getContentLength()); IOUtils.copy(conn.getInputStream(), resp.getOutputStream()); } | public String fileUpload(final ResourceType type, final String currentFolder, final String fileName, final InputStream inputStream) throws InvalidCurrentFolderException, WriteException { String absolutePath = getRealUserFilesAbsolutePath(RequestCycleHandler.getUserFilesAbsolutePath(ThreadLocalData.getRequest())); File typeDir = getOrCreateResourceTypeDir(absolutePath, type); File currentDir = new File(typeDir, currentFolder); if (!currentDir.exists() || !currentDir.isDirectory()) throw new InvalidCurrentFolderException(); File newFile = new File(currentDir, fileName); File fileToSave = UtilsFile.getUniqueFile(newFile.getAbsoluteFile()); try { IOUtils.copyLarge(inputStream, new FileOutputStream(fileToSave)); } catch (IOException e) { throw new WriteException(); } return fileToSave.getName(); } | 18,707 |
0 | public void setTableBraille(String tableBraille, boolean sys) { fiConf.setProperty(OptNames.fi_braille_table, tableBraille); fiConf.setProperty(OptNames.fi_is_sys_braille_table, Boolean.toString(sys)); FileChannel in = null; FileChannel out = null; try { String fichTable; if (!(tableBraille.endsWith(".ent"))) { tableBraille = tableBraille + ".ent"; } if (sys) { fichTable = ConfigNat.getInstallFolder() + "xsl/tablesBraille/" + tableBraille; } else { fichTable = ConfigNat.getUserBrailleTableFolder() + tableBraille; } in = new FileInputStream(fichTable).getChannel(); out = new FileOutputStream(getUserBrailleTableFolder() + "Brltab.ent").getChannel(); in.transferTo(0, in.size(), out); in.close(); out.close(); } catch (IOException e) { e.printStackTrace(); } try { String fichTable; if (sys) { fichTable = ConfigNat.getInstallFolder() + "/xsl/tablesEmbosseuse/" + tableBraille; } else { fichTable = ConfigNat.getUserEmbossTableFolder() + "/" + tableBraille; } in = new FileInputStream(fichTable).getChannel(); out = new FileOutputStream(ConfigNat.getUserTempFolder() + "Table_pour_chaines.ent").getChannel(); in.transferTo(0, in.size(), out); in.close(); out.close(); } catch (IOException e) { e.printStackTrace(); } } | @Test public void testCustomerResource() throws Exception { DefaultHttpClient client = new DefaultHttpClient(); System.out.println("**** CustomerResource No Query params ***"); HttpGet get = new HttpGet("http://localhost:9095/customers"); HttpResponse response = client.execute(get); Assert.assertEquals(200, response.getStatusLine().getStatusCode()); BufferedReader reader = new BufferedReader(new InputStreamReader(response.getEntity().getContent())); String line = reader.readLine(); while (line != null) { System.out.println(line); line = reader.readLine(); } System.out.println("**** CustomerResource With Query params ***"); get = new HttpGet("http://localhost:9095/customers?start=1&size=3"); response = client.execute(get); Assert.assertEquals(200, response.getStatusLine().getStatusCode()); reader = new BufferedReader(new InputStreamReader(response.getEntity().getContent())); line = reader.readLine(); while (line != null) { System.out.println(line); line = reader.readLine(); } System.out.println("**** CustomerResource With UriInfo and Query params ***"); get = new HttpGet("http://localhost:9095/customers/uriinfo?start=2&size=2"); response = client.execute(get); Assert.assertEquals(200, response.getStatusLine().getStatusCode()); reader = new BufferedReader(new InputStreamReader(response.getEntity().getContent())); line = reader.readLine(); while (line != null) { System.out.println(line); line = reader.readLine(); } } | 18,708 |
1 | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | private void dumpFile(File repository, File copy) { try { if (copy.exists() && !copy.delete()) { throw new RuntimeException("can't delete copy: " + copy); } printFile("Real Archive File", repository); new ZipArchive(repository.getPath()); IOUtils.copyFiles(repository, copy); printFile("Copy Archive File", copy); new ZipArchive(copy.getPath()); } catch (IOException e) { e.printStackTrace(); } } | 18,709 |
0 | public void get(final String remoteFilePath, final String remoteFileName, final String localName) { final FTPClient ftp = new FTPClient(); final FTPMessageCollector listener = new FTPMessageCollector(); try { final String localDirName = localName.substring(0, localName.lastIndexOf(File.separator)); System.out.println("ftp:"); System.out.println(" remoteDir " + remoteFilePath); System.out.println(" localDir " + localDirName); final File localDir = new File(localDirName); if (!localDir.exists()) { System.out.println(" create Dir " + localDirName); localDir.mkdir(); } ftp.setTimeout(10000); ftp.setRemoteHost(host); ftp.setMessageListener(listener); } catch (final UnknownHostException e) { showConnectError(); return; } catch (final Exception e) { e.printStackTrace(); } final TileInfoManager tileInfoMgr = TileInfoManager.getInstance(); final Job downloadJob = new Job(Messages.job_name_ftpDownload) { @Override protected IStatus run(final IProgressMonitor monitor) { try { showTileInfo(remoteFileName, -1); System.out.println(" connect " + host); ftp.connect(); showTileInfo(remoteFileName, -2); System.out.println(" login " + user + " " + password); ftp.login(user, password); System.out.println(" set passive mode"); ftp.setConnectMode(FTPConnectMode.PASV); System.out.println(" set type binary"); ftp.setType(FTPTransferType.BINARY); showTileInfo(remoteFileName, -3); System.out.println(" chdir " + remoteFilePath); ftp.chdir(remoteFilePath); ftp.setProgressMonitor(new FTPProgressMonitor() { public void bytesTransferred(final long count) { tileInfoMgr.updateSRTMTileInfo(TileEventId.SRTM_DATA_LOADING_MONITOR, remoteFileName, count); } }); showTileInfo(remoteFileName, -4); System.out.println(" get " + remoteFileName + " -> " + localName + " ..."); ftp.get(localName, remoteFileName); System.out.println(" quit"); ftp.quit(); } catch (final UnknownHostException e) { return new Status(IStatus.ERROR, TourbookPlugin.PLUGIN_ID, IStatus.ERROR, NLS.bind(Messages.error_message_cannotConnectToServer, host), e); } catch (final SocketTimeoutException e) { return new Status(IStatus.ERROR, TourbookPlugin.PLUGIN_ID, IStatus.ERROR, NLS.bind(Messages.error_message_timeoutWhenConnectingToServer, host), e); } catch (final Exception e) { e.printStackTrace(); tileInfoMgr.updateSRTMTileInfo(TileEventId.SRTM_DATA_ERROR_LOADING, remoteFileName, 0); } finally { tileInfoMgr.updateSRTMTileInfo(TileEventId.SRTM_DATA_END_LOADING, remoteFileName, 0); } return Status.OK_STATUS; } }; downloadJob.schedule(); try { downloadJob.join(); } catch (final InterruptedException e) { e.printStackTrace(); } } | public List tree(String cat, int branch) { Pattern p = Pattern.compile("<a href=\"javascript:checkBranch\\(([0-9]+), 'true'\\)\">([^<]*)</a>"); Matcher m; List res = new ArrayList(); URL url; HttpURLConnection conn; System.out.println(); try { url = new URL("http://cri-srv-ade.insa-toulouse.fr:8080/ade/standard/gui/tree.jsp?category=trainee&expand=false&forceLoad=false&reload=false&scroll=0"); conn = (HttpURLConnection) url.openConnection(); conn.setRequestMethod("GET"); conn.setDoOutput(true); conn.setDoInput(true); conn.setRequestProperty("Cookie", sessionId); BufferedReader i = new BufferedReader(new InputStreamReader(conn.getInputStream())); String line; while ((line = i.readLine()) != null) { m = p.matcher(line); if (m.find()) { trainee.add(new Node(Integer.parseInt(m.group(1)), m.group(2))); System.out.println(m.group(1) + " - " + m.group(2)); } } } catch (Exception e2) { e2.printStackTrace(); } return res; } | 18,710 |
0 | private void checkServerAccess() throws IOException { URL url = new URL("https://testnetbeans.org/bugzilla/index.cgi"); try { URLConnection conn = url.openConnection(); conn.setConnectTimeout(5000); conn.setReadTimeout(5000); conn.connect(); } catch (IOException exc) { disableMessage = "Bugzilla is not accessible"; } url = new URL(BugzillaConnector.SERVER_URL); try { URLConnection conn = url.openConnection(); conn.setConnectTimeout(5000); conn.setReadTimeout(5000); conn.connect(); } catch (IOException exc) { disableMessage = "Bugzilla Service is not accessible"; } } | static String getMD5Hash(String str) throws NoSuchAlgorithmException { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(str.getBytes()); byte[] b = md.digest(); StringBuffer sb = new StringBuffer(); for (int i = 0; i < b.length; i++) { int v = (int) b[i]; v = v < 0 ? 0x100 + v : v; String cc = Integer.toHexString(v); if (cc.length() == 1) sb.append('0'); sb.append(cc); } return sb.toString(); } | 18,711 |
0 | public static byte[] readFromURI(URI uri) throws IOException { if (uri.toString().contains("http:")) { URL url = uri.toURL(); URLConnection urlConnection = url.openConnection(); int length = urlConnection.getContentLength(); System.out.println("length of content in URL = " + length); if (length > -1) { byte[] pureContent = new byte[length]; DataInputStream dis = new DataInputStream(urlConnection.getInputStream()); dis.readFully(pureContent, 0, length); dis.close(); return pureContent; } else { throw new IOException("Unable to determine the content-length of the document pointed at " + url.toString()); } } else { return readWholeFile(uri).getBytes("UTF-8"); } } | protected void initConnection() { connection = null; try { connection = (HttpURLConnection) url.openConnection(); connection.setRequestProperty("Range", "bytes=" + downloadedSize + "-"); prepareConnectionBeforeConnect(); connection.connect(); } catch (IOException e) { status = STATUS_ERROR; Logger.getRootLogger().error("problem in connection", e); } } | 18,712 |
0 | @Override protected Void doInBackground(String... urls) { Log.d("ParseTask", "Getting URL " + urls[0]); try { XMLReader reader = SAXParserFactory.newInstance().newSAXParser().getXMLReader(); reader.setContentHandler(mParser); reader.parse(new InputSource(new URL(urls[0]).openStream())); } catch (Exception e) { if (mCallback != null) mCallback.OnFailure(new ApiResponseObject(ApiResponse.RESPONSE_CRITICAL_FAILURE, e.getLocalizedMessage())); } return null; } | @Override protected File doInBackground(String... params) { try { String urlString = params[0]; final String fileName = params[1]; if (!urlString.endsWith("/")) { urlString += "/"; } urlString += "apk/" + fileName; URL url = new URL(urlString); URLConnection connection = url.openConnection(); connection.connect(); File dir = new File(Environment.getExternalStorageDirectory(), "imogenemarket"); dir.mkdirs(); File file = new File(dir, fileName); if (file.exists()) { file.delete(); } file.createNewFile(); InputStream input = new BufferedInputStream(url.openStream()); OutputStream output = new FileOutputStream(file); byte data[] = new byte[1024]; int count; int bigCount = 0; while ((count = input.read(data)) != -1) { if (isCancelled()) { break; } bigCount += count; if (!mLocker.isLocked()) { publishProgress(bigCount); bigCount = 0; mLocker.lock(); } output.write(data, 0, count); } mLocker.cancel(); publishProgress(bigCount); output.flush(); output.close(); input.close(); if (isCancelled()) { file.delete(); return null; } return file; } catch (Exception e) { e.printStackTrace(); } return null; } | 18,713 |
1 | private static String fetchFile(String urlLocation) { try { URL url = new URL(urlLocation); URLConnection conn = url.openConnection(); File tempFile = File.createTempFile("marla", ".jar"); OutputStream os = new FileOutputStream(tempFile); IOUtils.copy(conn.getInputStream(), os); return tempFile.getAbsolutePath(); } catch (IOException ex) { throw new MarlaException("Unable to fetch file '" + urlLocation + "' from server", ex); } } | private void readObject(ObjectInputStream in) throws IOException, ClassNotFoundException { in.defaultReadObject(); OutputStream output = getOutputStream(); if (cachedContent != null) { output.write(cachedContent); } else { FileInputStream input = new FileInputStream(dfosFile); IOUtils.copy(input, output); dfosFile.delete(); dfosFile = null; } output.close(); cachedContent = null; } | 18,714 |
0 | public void removeGames(List<Game> games) throws SQLException { Connection conn = ConnectionManager.getManager().getConnection(); PreparedStatement stm = null; conn.setAutoCommit(false); try { for (Game game : games) { stm = conn.prepareStatement(Statements.DELETE_GAME); stm.setInt(1, game.getGameID()); stm.executeUpdate(); } } catch (SQLException e) { conn.rollback(); throw e; } finally { if (stm != null) stm.close(); } conn.commit(); conn.setAutoCommit(true); } | private void loadMascotLibrary() { if (isMascotLibraryLoaded) return; try { boolean isLinux = false; boolean isAMD64 = false; String mascotLibraryFile; if (Configurator.getOSName().toLowerCase().contains("linux")) { isLinux = true; } if (Configurator.getOSArch().toLowerCase().contains("amd64")) { isAMD64 = true; } if (isLinux) { if (isAMD64) { mascotLibraryFile = "libmsparserj-64.so"; } else { mascotLibraryFile = "libmsparserj-32.so"; } } else { if (isAMD64) { mascotLibraryFile = "msparserj-64.dll"; } else { mascotLibraryFile = "msparserj-32.dll"; } } logger.warn("Using: " + mascotLibraryFile); URL mascot_lib = MascotDAO.class.getClassLoader().getResource(mascotLibraryFile); if (mascot_lib != null) { logger.debug("Mascot library URL: " + mascot_lib); tmpMascotLibraryFile = File.createTempFile("libmascot.so.", ".tmp", new File(System.getProperty("java.io.tmpdir"))); InputStream in = mascot_lib.openStream(); OutputStream out = new FileOutputStream(tmpMascotLibraryFile); IOUtils.copy(in, out); in.close(); out.close(); System.load(tmpMascotLibraryFile.getAbsolutePath()); isMascotLibraryLoaded = true; } else { throw new ConverterException("Could not load Mascot Library for system: " + Configurator.getOSName() + Configurator.getOSArch()); } } catch (IOException e) { throw new ConverterException("Error loading Mascot library: " + e.getMessage(), e); } } | 18,715 |
1 | @Override public InputStream getInputStream() throws IOException { if (dfos == null) { int deferredOutputStreamThreshold = Config.getInstance().getDeferredOutputStreamThreshold(); dfos = new DeferredFileOutputStream(deferredOutputStreamThreshold, Definitions.PROJECT_NAME, "." + Definitions.TMP_EXTENSION); try { IOUtils.copy(is, dfos); } finally { dfos.close(); } } return dfos.getDeferredInputStream(); } | public static void concatenateToDestFile(File sourceFile, File destFile) throws IOException { if (!destFile.exists()) { if (!destFile.createNewFile()) { throw new IllegalArgumentException("Could not create destination file:" + destFile.getName()); } } BufferedOutputStream bufferedOutputStream = null; BufferedInputStream bufferedInputStream = null; byte[] buffer = new byte[1024]; try { bufferedOutputStream = new BufferedOutputStream(new FileOutputStream(destFile, true)); bufferedInputStream = new BufferedInputStream(new FileInputStream(sourceFile)); while (true) { int readByte = bufferedInputStream.read(buffer, 0, buffer.length); if (readByte == -1) { break; } bufferedOutputStream.write(buffer, 0, readByte); } } finally { if (bufferedOutputStream != null) { bufferedOutputStream.close(); } if (bufferedInputStream != null) { bufferedInputStream.close(); } } } | 18,716 |
0 | private void calculateCoverageAndSpecificity(String mainCat) throws IOException, JSONException { for (String cat : Rules.categoryTree.get(mainCat)) { for (String queryString : Rules.queries.get(cat)) { String urlEncodedQueryString = URLEncoder.encode(queryString, "UTF-8"); URL url = new URL("http://boss.yahooapis.com/ysearch/web/v1/" + urlEncodedQueryString + "?appid=" + yahoo_ap_id + "&count=4&format=json&sites=" + site); URLConnection con = url.openConnection(); String line; StringBuilder builder = new StringBuilder(); BufferedReader reader = new BufferedReader(new InputStreamReader(con.getInputStream())); while ((line = reader.readLine()) != null) { builder.append(line); } String response = builder.toString(); JSONObject json = new JSONObject(response); JSONObject jsonObject = json.getJSONObject("ysearchresponse"); String totalhits = jsonObject.getString("totalhits"); long totalhitsLong = Long.parseLong(totalhits); QueryInfo qinfo = new QueryInfo(queryString, totalhitsLong); queryInfoMap.put(queryString, qinfo); cov.put(cat, cov.get(cat) + totalhitsLong); if (totalhitsLong == 0) { continue; } ja = jsonObject.getJSONArray("resultset_web"); for (int j = 0; j < ja.length(); j++) { JSONObject k = ja.getJSONObject(j); String dispurl = filterBold(k.getString("url")); qinfo.addUrl(dispurl); } } } calculateSpecificity(mainCat); } | public static void copyFile(File src, File dest, int bufSize, boolean force) throws IOException { if (dest.exists()) { if (force) { dest.delete(); } else { throw new IOException(className + "Cannot overwrite existing file: " + dest.getAbsolutePath()); } } byte[] buffer = new byte[bufSize]; int read = 0; InputStream in = null; OutputStream out = null; try { in = new FileInputStream(src); out = new FileOutputStream(dest); while (true) { read = in.read(buffer); if (read == -1) { break; } out.write(buffer, 0, read); } } finally { if (in != null) { try { in.close(); } finally { if (out != null) { out.close(); } } } } } | 18,717 |
0 | public static String getPasswordHash(String password) { try { MessageDigest md = MessageDigest.getInstance("SHA-256"); md.update(password.getBytes()); byte[] byteData = md.digest(); StringBuilder sb = new StringBuilder(); for (int i = 0; i < byteData.length; i++) { sb.append(Integer.toString((byteData[i] & 0xff) + 0x100, 16).substring(1)); } return sb.toString(); } catch (NoSuchAlgorithmException e) { logger.log(Level.SEVERE, "Unknow error in hashing password", e); return "Unknow error, check system log"; } } | public void scan() throws Throwable { client = new FTPClient(); log.info("connecting to " + host + "..."); client.connect(host); log.info(client.getReplyString()); log.info("logging in..."); client.login("anonymous", ""); log.info(client.getReplyString()); Date date = Calendar.getInstance().getTime(); xmlDocument = new XMLDocument(host, dir, date); scanDirectory(dir); } | 18,718 |
1 | public void setKey(String key) { MessageDigest md5; byte[] mdKey = new byte[32]; try { md5 = MessageDigest.getInstance("MD5"); md5.update(key.getBytes()); byte[] digest = md5.digest(); System.arraycopy(digest, 0, mdKey, 0, 16); System.arraycopy(digest, 0, mdKey, 16, 16); } catch (Exception e) { System.out.println("MD5 not implemented, can't generate key out of string!"); System.exit(1); } setKey(mdKey); } | public static String sha1Hash(String input) { try { MessageDigest sha1Digest = MessageDigest.getInstance("SHA-1"); sha1Digest.update(input.getBytes()); return byteArrayToString(sha1Digest.digest()); } catch (Exception e) { logger.error(e.getMessage(), e); } return ""; } | 18,719 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public void testStorageString() throws Exception { TranslationResponseInMemory r = new TranslationResponseInMemory(2048, "UTF-8"); r.addText("This is an example"); r.addText(" and another one."); assertEquals("This is an example and another one.", r.getText()); InputStream input = r.getInputStream(); StringWriter writer = new StringWriter(); try { IOUtils.copy(input, writer, "UTF-8"); } finally { input.close(); writer.close(); } assertEquals("This is an example and another one.", writer.toString()); try { r.getOutputStream(); fail("Once addText() is used the text is stored as a String and you cannot use getOutputStream anymore"); } catch (IOException e) { } try { r.getWriter(); fail("Once addText() is used the text is stored as a String and you cannot use getOutputStream anymore"); } catch (IOException e) { } r.setEndState(ResponseStateOk.getInstance()); assertTrue(r.hasEnded()); } | 18,720 |
0 | private static void readAndWriteFile(File source, File target) { try { FileInputStream in = new FileInputStream(source); FileOutputStream out = new FileOutputStream(target); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); } catch (Exception e) { } } | public boolean exists(String filename) { String localFileName = (java.io.File.separatorChar != '/') ? filename.replace('/', java.io.File.separatorChar) : filename; for (int i = 0; i < dirs.length; i++) { if (zipEntries[i] != null) { if (zipEntries[i].get(filename) != null) return true; String dir = ""; String name = filename; int index = filename.lastIndexOf('/'); if (index >= 0) { dir = filename.substring(0, index); name = filename.substring(index + 1); } Vector directory = (Vector) zipEntries[i].get(dir); if (directory != null && directory.contains(name)) return true; continue; } if (bases[i] != null) { try { URL url = new URL(bases[i], filename); URLConnection conn = url.openConnection(); conn.connect(); conn.getInputStream().close(); return true; } catch (IOException ex) { } continue; } if (dirs[i] == null) continue; if (zips[i] != null) { String fullname = zipDirs[i] != null ? zipDirs[i] + filename : filename; ZipEntry ze = zips[i].getEntry(fullname); if (ze != null) return true; } else { try { File f = new File(dirs[i], localFileName); if (f.exists()) return true; } catch (SecurityException ex) { } } } return false; } | 18,721 |
1 | public static String toMD5String(String plainText) { if (TextUtils.isEmpty(plainText)) { plainText = ""; } StringBuilder text = new StringBuilder(); for (int i = plainText.length() - 1; i >= 0; i--) { text.append(plainText.charAt(i)); } plainText = text.toString(); MessageDigest mDigest; try { mDigest = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { return plainText; } mDigest.update(plainText.getBytes()); byte d[] = mDigest.digest(); StringBuffer hash = new StringBuffer(); for (int i = 0; i < d.length; i++) { hash.append(Integer.toHexString(0xFF & d[i])); } return hash.toString(); } | public String encryptLdapPassword(String algorithm) { String sEncrypted = _password; if ((_password != null) && (_password.length() > 0)) { algorithm = Val.chkStr(algorithm); boolean bMD5 = algorithm.equalsIgnoreCase("MD5"); boolean bSHA = algorithm.equalsIgnoreCase("SHA") || algorithm.equalsIgnoreCase("SHA1") || algorithm.equalsIgnoreCase("SHA-1"); if (bSHA || bMD5) { String sAlgorithm = "MD5"; if (bSHA) { sAlgorithm = "SHA"; } try { MessageDigest md = MessageDigest.getInstance(sAlgorithm); md.update(getPassword().getBytes("UTF-8")); sEncrypted = "{" + sAlgorithm + "}" + (new BASE64Encoder()).encode(md.digest()); } catch (NoSuchAlgorithmException e) { sEncrypted = null; e.printStackTrace(System.err); } catch (UnsupportedEncodingException e) { sEncrypted = null; e.printStackTrace(System.err); } } } return sEncrypted; } | 18,722 |
1 | public static void reconstruct(final List files, final Map properties, final OutputStream fout, final String base_url, final String producer, final PageSize[] size, final List hf) throws CConvertException { OutputStream out = fout; OutputStream out2 = fout; boolean signed = false; OutputStream oldOut = null; File tmp = null; File tmp2 = null; try { tmp = File.createTempFile("yahp", "pdf"); tmp2 = File.createTempFile("yahp", "pdf"); oldOut = out; if ("true".equals(properties.get(IHtmlToPdfTransformer.USE_PDF_SIGNING))) { signed = true; out2 = new FileOutputStream(tmp2); } else { out2 = oldOut; } out = new FileOutputStream(tmp); com.lowagie.text.Document document = null; PdfCopy writer = null; boolean first = true; Map mapSizeDoc = new HashMap(); int totalPage = 0; for (int i = 0; i < files.size(); i++) { final File fPDF = (File) files.get(i); final PdfReader reader = new PdfReader(fPDF.getAbsolutePath()); reader.consolidateNamedDestinations(); final int n = reader.getNumberOfPages(); if (first) { first = false; document = new com.lowagie.text.Document(reader.getPageSizeWithRotation(1)); writer = new PdfCopy(document, out); writer.setPdfVersion(PdfWriter.VERSION_1_3); writer.setFullCompression(); if ("true".equals(properties.get(IHtmlToPdfTransformer.USE_PDF_ENCRYPTION))) { final String password = (String) properties.get(IHtmlToPdfTransformer.PDF_ENCRYPTION_PASSWORD); final int securityType = CDocumentReconstructor.getSecurityFlags(properties); writer.setEncryption(PdfWriter.STRENGTH128BITS, password, null, securityType); } final String title = (String) properties.get(IHtmlToPdfTransformer.PDF_TITLE); if (title != null) { document.addTitle(title); } else if (base_url != null) { document.addTitle(base_url); } final String creator = (String) properties.get(IHtmlToPdfTransformer.PDF_CREATOR); if (creator != null) { document.addCreator(creator); } else { document.addCreator(IHtmlToPdfTransformer.VERSION); } final String author = (String) properties.get(IHtmlToPdfTransformer.PDF_AUTHOR); if (author != null) { document.addAuthor(author); } final String sproducer = (String) properties.get(IHtmlToPdfTransformer.PDF_PRODUCER); if (sproducer != null) { document.addProducer(sproducer); } else { document.addProducer(IHtmlToPdfTransformer.VERSION + " - http://www.allcolor.org/YaHPConverter/ - " + producer); } document.open(); } PdfImportedPage page; for (int j = 0; j < n; ) { ++j; totalPage++; mapSizeDoc.put("" + totalPage, "" + i); page = writer.getImportedPage(reader, j); writer.addPage(page); } } document.close(); out.flush(); out.close(); { final PdfReader reader = new PdfReader(tmp.getAbsolutePath()); ; final int n = reader.getNumberOfPages(); final PdfStamper stp = new PdfStamper(reader, out2); int i = 0; BaseFont.createFont(BaseFont.HELVETICA, BaseFont.WINANSI, BaseFont.EMBEDDED); final CHtmlToPdfFlyingSaucerTransformer trans = new CHtmlToPdfFlyingSaucerTransformer(); while (i < n) { i++; int indexSize = Integer.parseInt((String) mapSizeDoc.get("" + i)); final int[] dsize = size[indexSize].getSize(); final int[] dmargin = size[indexSize].getMargin(); for (final Iterator it = hf.iterator(); it.hasNext(); ) { final CHeaderFooter chf = (CHeaderFooter) it.next(); if (chf.getSfor().equals(CHeaderFooter.ODD_PAGES) && (i % 2 == 0)) { continue; } else if (chf.getSfor().equals(CHeaderFooter.EVEN_PAGES) && (i % 2 != 0)) { continue; } final String text = chf.getContent().replaceAll("<pagenumber>", "" + i).replaceAll("<pagecount>", "" + n); final PdfContentByte over = stp.getOverContent(i); final ByteArrayOutputStream bbout = new ByteArrayOutputStream(); if (chf.getType().equals(CHeaderFooter.HEADER)) { trans.transform(new ByteArrayInputStream(text.getBytes("utf-8")), base_url, new PageSize(dsize[0] - (dmargin[0] + dmargin[1]), dmargin[3]), new ArrayList(), properties, bbout); } else if (chf.getType().equals(CHeaderFooter.FOOTER)) { trans.transform(new ByteArrayInputStream(text.getBytes("utf-8")), base_url, new PageSize(dsize[0] - (dmargin[0] + dmargin[1]), dmargin[2]), new ArrayList(), properties, bbout); } final PdfReader readerHF = new PdfReader(bbout.toByteArray()); if (chf.getType().equals(CHeaderFooter.HEADER)) { over.addTemplate(stp.getImportedPage(readerHF, 1), dmargin[0], dsize[1] - dmargin[3]); } else if (chf.getType().equals(CHeaderFooter.FOOTER)) { over.addTemplate(stp.getImportedPage(readerHF, 1), dmargin[0], 0); } readerHF.close(); } } stp.close(); } try { out2.flush(); } catch (Exception ignore) { } finally { try { out2.close(); } catch (Exception ignore) { } } if (signed) { final String keypassword = (String) properties.get(IHtmlToPdfTransformer.PDF_SIGNING_PRIVATE_KEY_PASSWORD); final String password = (String) properties.get(IHtmlToPdfTransformer.PDF_ENCRYPTION_PASSWORD); final String keyStorepassword = (String) properties.get(IHtmlToPdfTransformer.PDF_SIGNING_KEYSTORE_PASSWORD); final String privateKeyFile = (String) properties.get(IHtmlToPdfTransformer.PDF_SIGNING_PRIVATE_KEY_FILE); final String reason = (String) properties.get(IHtmlToPdfTransformer.PDF_SIGNING_REASON); final String location = (String) properties.get(IHtmlToPdfTransformer.PDF_SIGNING_LOCATION); final boolean selfSigned = !"false".equals(properties.get(IHtmlToPdfTransformer.USE_PDF_SELF_SIGNING)); PdfReader reader = null; if (password != null) { reader = new PdfReader(tmp2.getAbsolutePath(), password.getBytes()); } else { reader = new PdfReader(tmp2.getAbsolutePath()); } final KeyStore ks = selfSigned ? KeyStore.getInstance(KeyStore.getDefaultType()) : KeyStore.getInstance("pkcs12"); ks.load(new FileInputStream(privateKeyFile), keyStorepassword.toCharArray()); final String alias = (String) ks.aliases().nextElement(); final PrivateKey key = (PrivateKey) ks.getKey(alias, keypassword.toCharArray()); final Certificate chain[] = ks.getCertificateChain(alias); final PdfStamper stp = PdfStamper.createSignature(reader, oldOut, '\0'); if ("true".equals(properties.get(IHtmlToPdfTransformer.USE_PDF_ENCRYPTION))) { stp.setEncryption(PdfWriter.STRENGTH128BITS, password, null, CDocumentReconstructor.getSecurityFlags(properties)); } final PdfSignatureAppearance sap = stp.getSignatureAppearance(); if (selfSigned) { sap.setCrypto(key, chain, null, PdfSignatureAppearance.SELF_SIGNED); } else { sap.setCrypto(key, chain, null, PdfSignatureAppearance.WINCER_SIGNED); } if (reason != null) { sap.setReason(reason); } if (location != null) { sap.setLocation(location); } stp.close(); oldOut.flush(); } } catch (final Exception e) { throw new CConvertException("ERROR: An Exception occured while reconstructing the pdf document: " + e.getMessage(), e); } finally { try { tmp.delete(); } catch (final Exception ignore) { } try { tmp2.delete(); } catch (final Exception ignore) { } } } | private void copy(File source, File dest) throws IOException { FileChannel in = null; FileChannel out = null; try { in = new FileInputStream(source).getChannel(); out = new FileOutputStream(dest).getChannel(); long size = in.size(); MappedByteBuffer buf = in.map(FileChannel.MapMode.READ_ONLY, 0, size); out.write(buf); } finally { close(in); close(out); } } | 18,723 |
0 | private void Connect() throws NpsException { try { client = new FTPClient(); client.connect(host.hostname, host.remoteport); int reply = client.getReplyCode(); if (!FTPReply.isPositiveCompletion(reply)) { client.disconnect(); client = null; nps.util.DefaultLog.error_noexception("FTP Server:" + host.hostname + "refused connection."); return; } client.login(host.uname, host.upasswd); client.enterLocalPassiveMode(); client.setFileType(FTPClient.BINARY_FILE_TYPE); client.changeWorkingDirectory(host.remotedir); } catch (Exception e) { nps.util.DefaultLog.error(e); } } | public static String calculate(String str) { MessageDigest md; try { md = MessageDigest.getInstance("SHA-256"); md.update(str.getBytes()); byte byteData[] = md.digest(); StringBuilder sb = new StringBuilder(); for (int i = 0; i < byteData.length; i++) { sb.append(Integer.toString((byteData[i] & 0xff) + 0x100, 16).substring(1)); } return sb.toString(); } catch (NoSuchAlgorithmException ex) { return null; } } | 18,724 |
0 | public void updateChecksum() { try { MessageDigest md = MessageDigest.getInstance("SHA"); List<Parameter> sortedKeys = new ArrayList<Parameter>(parameter_instances.keySet()); for (Parameter p : sortedKeys) { if (parameter_instances.get(p) != null && !(parameter_instances.get(p) instanceof OptionalDomain.OPTIONS) && !(parameter_instances.get(p).equals(FlagDomain.FLAGS.OFF))) { md.update(parameter_instances.get(p).toString().getBytes()); } } this.checksum = md.digest(); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } } | public void compressImage(InputStream input, OutputStream output, DjatokaEncodeParam params) throws DjatokaException { if (params == null) params = new DjatokaEncodeParam(); File inputFile = null; try { inputFile = File.createTempFile("tmp", ".tif"); IOUtils.copyStream(input, new FileOutputStream(inputFile)); if (params.getLevels() == 0) { ImageRecord dim = ImageRecordUtils.getImageDimensions(inputFile.getAbsolutePath()); params.setLevels(ImageProcessingUtils.getLevelCount(dim.getWidth(), dim.getHeight())); dim = null; } } catch (IOException e1) { logger.error("Unexpected file format; expecting uncompressed TIFF", e1); throw new DjatokaException("Unexpected file format; expecting uncompressed TIFF"); } String out = STDOUT; File winOut = null; if (isWindows) { try { winOut = File.createTempFile("pipe_", ".jp2"); } catch (IOException e) { logger.error(e, e); throw new DjatokaException(e); } out = winOut.getAbsolutePath(); } String command = getKduCompressCommand(inputFile.getAbsolutePath(), out, params); logger.debug("compressCommand: " + command); Runtime rt = Runtime.getRuntime(); try { final Process process = rt.exec(command, envParams, new File(env)); if (out.equals(STDOUT)) { IOUtils.copyStream(process.getInputStream(), output); } else if (isWindows) { FileInputStream fis = new FileInputStream(out); IOUtils.copyStream(fis, output); fis.close(); } process.waitFor(); if (process != null) { String errorCheck = null; try { errorCheck = new String(IOUtils.getByteArray(process.getErrorStream())); } catch (Exception e1) { logger.error(e1, e1); } process.getInputStream().close(); process.getOutputStream().close(); process.getErrorStream().close(); process.destroy(); if (errorCheck != null) throw new DjatokaException(errorCheck); } } catch (IOException e) { logger.error(e, e); throw new DjatokaException(e); } catch (InterruptedException e) { logger.error(e, e); throw new DjatokaException(e); } if (inputFile != null) inputFile.delete(); if (winOut != null) winOut.delete(); } | 18,725 |
0 | private boolean tryGet(String url, Hashtable<String, String> req) throws Exception { boolean result = false; Enumeration<String> keys = req.keys(); String key; String value; String data = ""; while (keys.hasMoreElements()) { key = keys.nextElement(); value = req.get(key); data += URLEncoder.encode(key, "UTF-8") + "=" + URLEncoder.encode(value, "UTF-8") + "&"; } URLConnection conn = new URL(url).openConnection(); conn.setDoOutput(true); OutputStreamWriter wr = new OutputStreamWriter(conn.getOutputStream()); wr.write(data); wr.flush(); BufferedReader rd = new BufferedReader(new InputStreamReader(conn.getInputStream())); String line; while ((line = rd.readLine()) != null) { if (line != null) result = true; } wr.close(); rd.close(); result = true; return result; } | public void run() { saveWLHome(); for (final TabControl control : tabControls) { control.performOk(WLPropertyPage.this.getProject(), WLPropertyPage.this); } if (isEnabledJCLCopy()) { final File url = new File(WLPropertyPage.this.domainDirectory.getText()); File lib = new File(url, "lib"); File log4jLibrary = new File(lib, "log4j-1.2.13.jar"); if (!log4jLibrary.exists()) { InputStream srcFile = null; FileOutputStream fos = null; try { srcFile = toInputStream(new Path("jcl/log4j-1.2.13.jar")); fos = new FileOutputStream(log4jLibrary); IOUtils.copy(srcFile, fos); srcFile.close(); fos.flush(); fos.close(); srcFile = toInputStream(new Path("/jcl/commons-logging-1.0.4.jar")); File jcl = new File(lib, "commons-logging-1.0.4.jar"); fos = new FileOutputStream(jcl); IOUtils.copy(srcFile, fos); } catch (IOException e) { Logger.log(Logger.ERROR, "Could not copy JCL jars file to Bea WL", e); } finally { try { if (srcFile != null) { srcFile.close(); srcFile = null; } if (fos != null) { fos.flush(); fos.close(); fos = null; } } catch (IOException e) { } } } } if (isEnabledJSTLCopy()) { File url = new File(WLPropertyPage.this.domainDirectory.getText()); File lib = new File(url, "lib"); File jstlLibrary = new File(lib, "jstl.jar"); if (!jstlLibrary.exists()) { InputStream srcFile = null; FileOutputStream fos = null; try { srcFile = toInputStream(new Path("jstl/jstl.jar")); fos = new FileOutputStream(jstlLibrary); IOUtils.copy(srcFile, fos); } catch (IOException e) { Logger.log(Logger.ERROR, "Could not copy the JSTL 1.1 jar file to Bea WL", e); } finally { try { if (srcFile != null) { srcFile.close(); srcFile = null; } if (fos != null) { fos.flush(); fos.close(); fos = null; } } catch (final IOException e) { Logger.getLog().debug("I/O exception closing resources", e); } } } } } | 18,726 |
1 | public boolean updateLOB(String sql, int displayType, Object value, String trxName, SecurityToken token) { validateSecurityToken(token); if (sql == null || value == null) { log.fine("No sql or data"); return false; } log.fine(sql); Trx trx = null; if (trxName != null && trxName.trim().length() > 0) { trx = Trx.get(trxName, false); if (trx == null) throw new RuntimeException("Transaction lost - " + trxName); } m_updateLOBCount++; boolean success = true; Connection con = trx != null ? trx.getConnection() : DB.createConnection(false, Connection.TRANSACTION_READ_COMMITTED); PreparedStatement pstmt = null; try { pstmt = con.prepareStatement(sql); if (displayType == DisplayType.TextLong) pstmt.setString(1, (String) value); else pstmt.setBytes(1, (byte[]) value); int no = pstmt.executeUpdate(); } catch (Exception e) { log.log(Level.FINE, sql, e); success = false; } finally { DB.close(pstmt); pstmt = null; } if (success && trx == null) { try { con.commit(); } catch (Exception e) { log.log(Level.SEVERE, "commit", e); success = false; } finally { try { con.close(); } catch (SQLException e) { } con = null; } } if (!success) { log.severe("rollback"); if (trx == null) { try { con.rollback(); } catch (Exception ee) { log.log(Level.SEVERE, "rollback", ee); } finally { try { con.close(); } catch (SQLException e) { } con = null; } } else { trx.rollback(); } } return success; } | public static boolean copyDataToNewTable(EboContext p_eboctx, String srcTableName, String destTableName, String where, boolean log, int mode) throws boRuntimeException { srcTableName = srcTableName.toUpperCase(); destTableName = destTableName.toUpperCase(); Connection cn = null; Connection cndef = null; boolean ret = false; try { boolean srcexists = false; boolean destexists = false; final InitialContext ic = new InitialContext(); cn = p_eboctx.getConnectionData(); cndef = p_eboctx.getConnectionDef(); PreparedStatement pstm = cn.prepareStatement("SELECT TABLE_NAME FROM USER_TABLES WHERE TABLE_NAME=?"); pstm.setString(1, srcTableName); ResultSet rslt = pstm.executeQuery(); if (rslt.next()) { srcexists = true; } rslt.close(); pstm.setString(1, destTableName); rslt = pstm.executeQuery(); if (rslt.next()) { destexists = true; } if (!destexists) { rslt.close(); pstm.close(); pstm = cn.prepareStatement("SELECT VIEW_NAME FROM USER_VIEWS WHERE VIEW_NAME=?"); pstm.setString(1, destTableName); rslt = pstm.executeQuery(); if (rslt.next()) { CallableStatement cstm = cn.prepareCall("DROP VIEW " + destTableName); cstm.execute(); cstm.close(); } } rslt.close(); pstm.close(); if (srcexists && !destexists) { if (log) { logger.finest(LoggerMessageLocalizer.getMessage("CREATING_AND_COPY_DATA_FROM") + " [" + srcTableName + "] " + LoggerMessageLocalizer.getMessage("TO") + " [" + destTableName + "]"); } CallableStatement cstm = cn.prepareCall("CREATE TABLE " + destTableName + " AS SELECT * FROM " + srcTableName + " " + (((where != null) && (where.length() > 0)) ? (" WHERE " + where) : "")); cstm.execute(); cstm.close(); if (log) { logger.finest(LoggerMessageLocalizer.getMessage("UPDATING_NGTDIC")); } cn.commit(); ret = true; } else if (srcexists && destexists) { if (log) { logger.finest(LoggerMessageLocalizer.getMessage("COPY_DATA_FROM") + " [" + srcTableName + "] " + LoggerMessageLocalizer.getMessage("TO") + " [" + destTableName + "]"); } PreparedStatement pstm2 = cn.prepareStatement("SELECT COLUMN_NAME FROM USER_TAB_COLUMNS WHERE TABLE_NAME = ? "); pstm2.setString(1, destTableName); ResultSet rslt2 = pstm2.executeQuery(); StringBuffer fields = new StringBuffer(); PreparedStatement pstm3 = cn.prepareStatement("SELECT COLUMN_NAME FROM USER_TAB_COLUMNS WHERE TABLE_NAME = ? and COLUMN_NAME=?"); while (rslt2.next()) { pstm3.setString(1, srcTableName); pstm3.setString(2, rslt2.getString(1)); ResultSet rslt3 = pstm3.executeQuery(); if (rslt3.next()) { if (fields.length() > 0) { fields.append(','); } fields.append('"').append(rslt2.getString(1)).append('"'); } rslt3.close(); } pstm3.close(); rslt2.close(); pstm2.close(); CallableStatement cstm; int recs = 0; if ((mode == 0) || (mode == 1)) { cstm = cn.prepareCall("INSERT INTO " + destTableName + "( " + fields.toString() + " ) ( SELECT " + fields.toString() + " FROM " + srcTableName + " " + (((where != null) && (where.length() > 0)) ? (" WHERE " + where) : "") + ")"); recs = cstm.executeUpdate(); cstm.close(); if (log) { logger.finest(LoggerMessageLocalizer.getMessage("DONE") + " [" + recs + "] " + LoggerMessageLocalizer.getMessage("RECORDS_COPIED")); } } cn.commit(); ret = true; } } catch (Exception e) { try { cn.rollback(); } catch (Exception z) { throw new boRuntimeException("boBuildDB.moveTable", "BO-1304", z); } throw new boRuntimeException("boBuildDB.moveTable", "BO-1304", e); } finally { try { cn.close(); } catch (Exception e) { } try { cndef.close(); } catch (Exception e) { } } return ret; } | 18,727 |
0 | public static void transfer(File src, File dest, boolean removeSrc) throws FileNotFoundException, IOException { Log.warning("source: " + src); Log.warning("dest: " + dest); if (!src.canRead()) { throw new IOException("can not read src file: " + src); } if (!dest.getParentFile().isDirectory()) { if (!dest.getParentFile().mkdirs()) { throw new IOException("failed to make directories: " + dest.getParent()); } } FileInputStream fis = new FileInputStream(src); FileOutputStream fos = new FileOutputStream(dest); FileChannel fcin = fis.getChannel(); FileChannel fcout = fos.getChannel(); Log.warning("starting transfer from position " + fcin.position() + " to size " + fcin.size()); fcout.transferFrom(fcin, 0, fcin.size()); Log.warning("closing streams and channels"); fcin.close(); fcout.close(); fis.close(); fos.close(); if (removeSrc) { Log.warning("deleting file " + src); src.delete(); } } | private String executeHttpPreload(HttpResponse response, String xml) throws Exception { GadgetSpec spec = new GadgetSpec(GADGET_URL, xml); RecordingRequestPipeline pipeline = new RecordingRequestPipeline(response); PipelinedDataPreloader preloader = new PipelinedDataPreloader(pipeline, containerConfig); view = "profile"; Gadget gadget = new Gadget().setContext(context).setSpec(spec).setCurrentView(spec.getView("profile")); PipelinedData.Batch batch = getBatch(gadget); Collection<Callable<PreloadedData>> tasks = preloader.createPreloadTasks(context, batch); assertEquals(1, tasks.size()); assertEquals(0, pipeline.requests.size()); Collection<Object> result = tasks.iterator().next().call().toJson(); assertEquals(1, result.size()); assertEquals(1, pipeline.requests.size()); HttpRequest request = pipeline.requests.get(0); assertEquals(HTTP_REQUEST_URL, request.getUri().toString()); assertEquals("POST", request.getMethod()); assertEquals(60, request.getCacheTtl()); return result.iterator().next().toString(); } | 18,728 |
0 | public void sortIndexes() { int i, j, count; int t; count = m_ItemIndexes.length; for (i = 1; i < count; i++) { for (j = 0; j < count - i; j++) { if (m_ItemIndexes[j] > m_ItemIndexes[j + 1]) { t = m_ItemIndexes[j]; m_ItemIndexes[j] = m_ItemIndexes[j + 1]; m_ItemIndexes[j + 1] = t; } } } } | @Test public void GetBingSearchResult() throws UnsupportedEncodingException { String query = "Scanner Java example"; String request = "http://api.bing.net/xml.aspx?AppId=731DD1E61BE6DE4601A3008DC7A0EB379149EC29" + "&Version=2.2&Market=en-US&Query=" + URLEncoder.encode(query, "UTF-8") + "&Sources=web+spell&Web.Count=50"; try { URL url = new URL(request); System.out.println("Host : " + url.getHost()); BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); String inputLine; String finalContents = ""; while ((inputLine = reader.readLine()) != null) { finalContents += "\n" + inputLine; } Document doc = Jsoup.parse(finalContents); Elements eles = doc.getElementsByTag("web:Url"); for (Element ele : eles) { System.out.println(ele.text()); } } catch (Exception e) { e.printStackTrace(); } } | 18,729 |
0 | @Test public void test_baseMaterialsForTypeID_NonExistingID() throws Exception { URL url = new URL(baseUrl + "/baseMaterialsForTypeID/1234567890"); HttpURLConnection connection = (HttpURLConnection) url.openConnection(); connection.setRequestMethod("GET"); connection.setRequestProperty("Accept", "application/json"); assertThat(connection.getResponseCode(), equalTo(400)); connection = (HttpURLConnection) url.openConnection(); connection.setRequestMethod("GET"); connection.setRequestProperty("Accept", "application/xml"); assertThat(connection.getResponseCode(), equalTo(400)); } | public static String hexMD5(String value) { try { MessageDigest messageDigest = MessageDigest.getInstance("MD5"); messageDigest.reset(); messageDigest.update(value.getBytes("utf-8")); byte[] digest = messageDigest.digest(); return byteToHexString(digest); } catch (Exception ex) { throw new UnexpectedException(ex); } } | 18,730 |
1 | @Override protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { String contentType = req.getParameter("type"); String arg = req.getParameter("file"); if (arg == null) { resp.sendError(404, "Missing File Arg"); return; } File f = new File(arg); if (!f.exists()) { resp.sendError(404, "Missing File: " + f); return; } if (contentType != null) { resp.setContentType(contentType); } log.debug("Requested File: " + f + " as type: " + contentType); resp.setContentLength((int) f.length()); FileInputStream fis = null; try { fis = new FileInputStream(f); OutputStream os = resp.getOutputStream(); IOUtils.copyLarge(fis, os); os.flush(); fis.close(); } catch (Throwable e) { log.error("Failed to send file: " + f); resp.sendError(500, "Failed to get file " + f); } finally { IOUtils.closeQuietly(fis); } } | public void run() { try { Socket socket = getSocket(); System.out.println("opening socket to " + address + " on " + port); InputStream in = socket.getInputStream(); for (; ; ) { FileTransferHeader header = FileTransferHeader.readHeader(in); if (header == null) break; System.out.println("header: " + header); String[] parts = header.getFilename().getSegments(); String filename; if (parts.length > 0) filename = "dl-" + parts[parts.length - 1]; else filename = "dl-" + session.getScreenname(); System.out.println("writing to file " + filename); long sum = 0; if (new File(filename).exists()) { FileInputStream fis = new FileInputStream(filename); byte[] block = new byte[10]; for (int i = 0; i < block.length; ) { int count = fis.read(block); if (count == -1) break; i += count; } FileTransferChecksum summer = new FileTransferChecksum(); summer.update(block, 0, 10); sum = summer.getValue(); } FileChannel fileChannel = new FileOutputStream(filename).getChannel(); FileTransferHeader outHeader = new FileTransferHeader(header); outHeader.setHeaderType(FileTransferHeader.HEADERTYPE_ACK); outHeader.setIcbmMessageId(cookie); outHeader.setBytesReceived(0); outHeader.setReceivedChecksum(sum); OutputStream socketOut = socket.getOutputStream(); System.out.println("sending header: " + outHeader); outHeader.write(socketOut); for (int i = 0; i < header.getFileSize(); ) { long transferred = fileChannel.transferFrom(Channels.newChannel(in), 0, header.getFileSize() - i); System.out.println("transferred " + transferred); if (transferred == -1) return; i += transferred; } System.out.println("finished transfer!"); fileChannel.close(); FileTransferHeader doneHeader = new FileTransferHeader(header); doneHeader.setHeaderType(FileTransferHeader.HEADERTYPE_RECEIVED); doneHeader.setFlags(doneHeader.getFlags() | FileTransferHeader.FLAG_DONE); doneHeader.setBytesReceived(doneHeader.getBytesReceived() + 1); doneHeader.setIcbmMessageId(cookie); doneHeader.setFilesLeft(doneHeader.getFilesLeft() - 1); doneHeader.write(socketOut); if (doneHeader.getFilesLeft() - 1 <= 0) { socket.close(); break; } } } catch (IOException e) { e.printStackTrace(); return; } } | 18,731 |
0 | protected BufferedImage handleGMUException() { if (params.uri.startsWith("http://mars.gmu.edu:8080")) try { URLConnection connection = new URL(params.uri).openConnection(); int index = params.uri.lastIndexOf("?"); params.uri = "<img class=\"itemthumb\" src=\""; BufferedReader reader = new BufferedReader(new InputStreamReader(connection.getInputStream())); String url = null; while ((url = reader.readLine()) != null) { index = url.indexOf(params.uri); if (index != -1) { url = "http://mars.gmu.edu:8080" + url.substring(index + 28); url = url.substring(0, url.indexOf("\" alt=\"")); break; } } if (url != null) { connection = new URL(url).openConnection(); return processNewUri(connection); } } catch (Exception e) { } return null; } | protected HttpResponse executeRequest(AbstractHttpRequest request) throws ConnectionException, RequestCancelledException { try { HttpResponse response = getHttpClient().execute(request); if (!response.is2xxSuccess()) { throw new ConnectionException(); } return response; } catch (IOException ex) { throw new ConnectionException(); } catch (TimeoutException ex) { throw new ConnectionException(); } } | 18,732 |
0 | public static String encodePassword(String password) { try { MessageDigest messageDiegest = MessageDigest.getInstance("SHA-1"); messageDiegest.update(password.getBytes("UTF-8")); return Base64.encodeToString(messageDiegest.digest(), false); } catch (NoSuchAlgorithmException e) { log.error("Exception while encoding password"); throw new Error(e); } catch (UnsupportedEncodingException e) { log.error("Exception while encoding password"); throw new Error(e); } } | public String getMethod(String url) { logger.info("Facebook: @executing facebookGetMethod():" + url); String responseStr = null; try { HttpGet loginGet = new HttpGet(url); loginGet.addHeader("Accept-Encoding", "gzip"); HttpResponse response = httpClient.execute(loginGet); HttpEntity entity = response.getEntity(); logger.trace("Facebook: facebookGetMethod: " + response.getStatusLine()); if (entity != null) { InputStream in = response.getEntity().getContent(); if (response.getEntity().getContentEncoding().getValue().equals("gzip")) { in = new GZIPInputStream(in); } StringBuffer sb = new StringBuffer(); byte[] b = new byte[4096]; int n; while ((n = in.read(b)) != -1) { sb.append(new String(b, 0, n)); } responseStr = sb.toString(); in.close(); entity.consumeContent(); } int statusCode = response.getStatusLine().getStatusCode(); if (statusCode != 200) { logger.warn("Facebook: Error Occured! Status Code = " + statusCode); responseStr = null; } logger.info("Facebook: Get Method done(" + statusCode + "), response string length: " + (responseStr == null ? 0 : responseStr.length())); } catch (IOException e) { logger.warn("Facebook: ", e); } return responseStr; } | 18,733 |
1 | static void copy(String src, String dest) throws IOException { File ifp = new File(src); File ofp = new File(dest); if (ifp.exists() == false) { throw new IOException("file '" + src + "' does not exist"); } FileInputStream fis = new FileInputStream(ifp); FileOutputStream fos = new FileOutputStream(ofp); byte[] b = new byte[1024]; while (fis.read(b) > 0) fos.write(b); fis.close(); fos.close(); } | private InputStream open(String url) throws IOException { debug(url); if (!useCache) { return new URL(url).openStream(); } File f = new File(System.getProperty("java.io.tmpdir", "."), Digest.SHA1.encrypt(url) + ".xml"); debug("Cache : " + f); if (f.exists()) { return new FileInputStream(f); } InputStream in = new URL(url).openStream(); OutputStream out = new FileOutputStream(f); IOUtils.copyTo(in, out); out.flush(); out.close(); in.close(); return new FileInputStream(f); } | 18,734 |
1 | static void invalidSlave(String msg, Socket sock) throws IOException { BufferedReader _sinp = null; PrintWriter _sout = null; try { _sout = new PrintWriter(sock.getOutputStream(), true); _sinp = new BufferedReader(new InputStreamReader(sock.getInputStream())); _sout.println(msg); logger.info("NEW< " + msg); String txt = AsyncSlaveListener.readLine(_sinp, 30); String sname = ""; String spass = ""; String shash = ""; try { String[] items = txt.split(" "); sname = items[1].trim(); spass = items[2].trim(); shash = items[3].trim(); } catch (Exception e) { throw new IOException("Slave Inititalization Faailed"); } String pass = sname + spass + _pass; MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.reset(); md5.update(pass.getBytes()); String hash = AsyncSlaveListener.hash2hex(md5.digest()).toLowerCase(); if (!hash.equals(shash)) { throw new IOException("Slave Inititalization Faailed"); } } catch (Exception e) { } throw new IOException("Slave Inititalization Faailed"); } | public String login() { String authSuccess = "false"; try { String errorMesg = ""; int error; if ((error = utils.stringIsNull(passwd)) != -1) { errorMesg += rb.getString("passwdField") + ": " + utils.errors[error] + " "; } else if ((error = utils.stringIsEmpty(passwd)) != -1) { errorMesg += rb.getString("passwdField") + ": " + utils.errors[error] + " "; } if ((error = utils.stringIsNull(login)) != -1) { errorMesg += rb.getString("loginField") + ": " + utils.errors[error] + " "; } else if ((error = utils.stringIsEmpty(login)) != -1) { errorMesg += rb.getString("loginField") + ": " + utils.errors[error] + " "; } String[] admins = conf.getProperty("admin").split("\\s"); boolean admin = false; for (int i = 0; i < admins.length; i++) { if (admins[i].equals(login)) { admin = true; } } if (!admin) { errorMesg += rb.getString("noAdmin"); session.invalidate(); } else { session.setAttribute("conf", conf); } if (errorMesg.length() > 0) { status = errorMesg; System.out.println(status); FacesContext context = FacesContext.getCurrentInstance(); context.renderResponse(); } else { MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.reset(); md5.update(passwd.getBytes()); byte[] result = md5.digest(); StringBuffer hexString = new StringBuffer(); for (int i = 0; i < result.length; i++) { String hex = Integer.toHexString(0xFF & result[i]); if (hex.length() == 1) { hexString.append('0'); } hexString.append(hex); } authSuccess = (sqlManager.getPassword(login).equals(hexString.toString())) ? "true" : "false"; if (authSuccess.equals("false")) session.invalidate(); } } catch (NoSuchAlgorithmException nsae) { utils.catchExp(nsae); status = utils.getStatus(); if (stacktrace) { stackTrace = utils.getStackTrace(); } FacesContext.getCurrentInstance().renderResponse(); } catch (SQLException sqle) { utils.catchExp(sqle); status = utils.getStatus(); if (stacktrace) { stackTrace = utils.getStackTrace(); } FacesContext.getCurrentInstance().renderResponse(); } return authSuccess; } | 18,735 |
0 | public void apop(String user, char[] secret) throws IOException, POP3Exception { if (timestamp == null) { throw new CommandNotSupportedException("No timestamp from server - APOP not possible"); } try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(timestamp.getBytes()); if (secret == null) secret = new char[0]; byte[] digest = md.digest(new String(secret).getBytes("ISO-8859-1")); mutex.lock(); sendCommand("APOP", new String[] { user, digestToString(digest) }); POP3Response response = readSingleLineResponse(); if (!response.isOK()) { throw new POP3Exception(response); } state = TRANSACTION; } catch (NoSuchAlgorithmException e) { throw new POP3Exception("Installed JRE doesn't support MD5 - APOP not possible"); } finally { mutex.release(); } } | public void processDeleteHolding(Holding holdingBean, AuthSession authSession) { if (authSession == null) { return; } DatabaseAdapter dbDyn = null; PreparedStatement ps = null; try { dbDyn = DatabaseAdapter.getInstance(); if (holdingBean.getId() == null) throw new IllegalArgumentException("holdingId is null"); processDeleteRelatedCompany(dbDyn, holdingBean, authSession); String sql = "delete from WM_LIST_HOLDING " + "where ID_HOLDING=? and ID_HOLDING in "; switch(dbDyn.getFamaly()) { case DatabaseManager.MYSQL_FAMALY: String idList = authSession.getGrantedHoldingId(); sql += " (" + idList + ") "; break; default: sql += "(select z1.ID_ROAD from v$_read_list_road z1 where z1.user_login = ?)"; break; } ps = dbDyn.prepareStatement(sql); RsetTools.setLong(ps, 1, holdingBean.getId()); switch(dbDyn.getFamaly()) { case DatabaseManager.MYSQL_FAMALY: break; default: ps.setString(2, authSession.getUserLogin()); break; } int i1 = ps.executeUpdate(); if (log.isDebugEnabled()) log.debug("Count of deleted records - " + i1); dbDyn.commit(); } catch (Exception e) { try { if (dbDyn != null) dbDyn.rollback(); } catch (Exception e001) { } String es = "Error delete holding"; log.error(es, e); throw new IllegalStateException(es, e); } finally { DatabaseManager.close(dbDyn, ps); dbDyn = null; ps = null; } } | 18,736 |
1 | public static Object deployNewService(String scNodeRmiName, String userName, String password, String name, String jarName, String serviceClass, String serviceInterface, Logger log) throws RemoteException, MalformedURLException, StartServiceException, NotBoundException, IllegalArgumentException, SecurityException, InstantiationException, IllegalAccessException, InvocationTargetException, SessionException { try { SCNodeInterface node = (SCNodeInterface) Naming.lookup(scNodeRmiName); String session = node.login(userName, password); ByteArrayOutputStream baos = new ByteArrayOutputStream(); IOUtils.copy(new FileInputStream(jarName), baos); ServiceAdapterIfc adapter = node.deploy(session, name, baos.toByteArray(), jarName, serviceClass, serviceInterface); if (adapter != null) { return new ExternalDomain(node, adapter, adapter.getUri(), log).getProxy(Thread.currentThread().getContextClassLoader()); } } catch (Exception e) { log.warn("Could not send deploy command: " + e.getMessage(), e); } return null; } | public void copieFichier(String fileIn, String fileOut) { FileChannel in = null; FileChannel out = null; try { in = new FileInputStream(fileIn).getChannel(); out = new FileOutputStream(fileOut).getChannel(); in.transferTo(0, in.size(), out); } catch (Exception e) { e.printStackTrace(); } finally { if (in != null) { try { in.close(); } catch (IOException e) { } } if (out != null) { try { out.close(); } catch (IOException e) { } } } } | 18,737 |
1 | private static void doCopyFile(File srcFile, File destFile, boolean preserveFileDate) throws IOException { if (destFile.exists() && destFile.isDirectory()) { throw new IOException("Destination '" + destFile + "' exists but is a directory"); } FileInputStream input = new FileInputStream(srcFile); try { FileOutputStream output = new FileOutputStream(destFile); try { IOUtils.copy(input, output); } finally { IOUtils.close(output); } } finally { IOUtils.close(input); } if (srcFile.length() != destFile.length()) { throw new IOException("Failed to copy full contents from '" + srcFile + "' to '" + destFile + "'"); } if (preserveFileDate) { destFile.setLastModified(srcFile.lastModified()); } } | private void writeJar() { try { File outJar = new File(currentProjectDir + DEPLOYDIR + fileSeparator + currentProjectName + ".jar"); jarSize = (int) outJar.length(); File tempJar = File.createTempFile("hipergps" + currentProjectName, ".jar"); tempJar.deleteOnExit(); File preJar = new File(currentProjectDir + "/res/wtj2me.jar"); JarInputStream preJarInStream = new JarInputStream(new FileInputStream(preJar)); Manifest mFest = preJarInStream.getManifest(); java.util.jar.Attributes atts = mFest.getMainAttributes(); if (hiperGeoId != null) { atts.putValue("hiperGeoId", hiperGeoId); } jad.updateAttributes(atts); JarOutputStream jarOutStream = new JarOutputStream(new FileOutputStream(tempJar), mFest); byte[] buffer = new byte[WalkingtoolsInformation.BUFFERSIZE]; JarEntry jarEntry = null; while ((jarEntry = preJarInStream.getNextJarEntry()) != null) { if (jarEntry.getName().contains("net/") || jarEntry.getName().contains("org/")) { try { jarOutStream.putNextEntry(jarEntry); } catch (ZipException ze) { continue; } int read; while ((read = preJarInStream.read(buffer)) != -1) { jarOutStream.write(buffer, 0, read); } jarOutStream.closeEntry(); } } File[] icons = { new File(currentProjectDir + WalkingtoolsInformation.IMAGEDIR + fileSeparator + "icon_" + WalkingtoolsInformation.MEDIAUUID + ".png"), new File(currentProjectDir + WalkingtoolsInformation.IMAGEDIR + fileSeparator + "loaderIcon_" + WalkingtoolsInformation.MEDIAUUID + ".png"), new File(currentProjectDir + WalkingtoolsInformation.IMAGEDIR + fileSeparator + "mygps_" + WalkingtoolsInformation.MEDIAUUID + ".png") }; for (int i = 0; i < icons.length; i++) { jarEntry = new JarEntry("img/" + icons[i].getName()); try { jarOutStream.putNextEntry(jarEntry); } catch (ZipException ze) { continue; } FileInputStream in = new FileInputStream(icons[i]); while (true) { int read = in.read(buffer, 0, buffer.length); if (read <= 0) { break; } jarOutStream.write(buffer, 0, read); } in.close(); } for (int i = 0; i < imageFiles.size(); i++) { jarEntry = new JarEntry("img/" + imageFiles.get(i).getName()); try { jarOutStream.putNextEntry(jarEntry); } catch (ZipException ze) { continue; } FileInputStream in = new FileInputStream(imageFiles.get(i)); while (true) { int read = in.read(buffer, 0, buffer.length); if (read <= 0) { break; } jarOutStream.write(buffer, 0, read); } in.close(); } for (int i = 0; i < audioFiles.size(); i++) { jarEntry = new JarEntry("audio/" + audioFiles.get(i).getName()); try { jarOutStream.putNextEntry(jarEntry); } catch (ZipException ze) { continue; } FileInputStream in = new FileInputStream(audioFiles.get(i)); while (true) { int read = in.read(buffer, 0, buffer.length); if (read <= 0) { break; } jarOutStream.write(buffer, 0, read); } in.close(); } File gpx = new File(currentProjectDir + WalkingtoolsInformation.GPXDIR + "/hipergps.gpx"); jarEntry = new JarEntry("gpx/" + gpx.getName()); jarOutStream.putNextEntry(jarEntry); FileInputStream in = new FileInputStream(gpx); while (true) { int read = in.read(buffer, 0, buffer.length); if (read <= 0) { break; } jarOutStream.write(buffer, 0, read); } in.close(); jarOutStream.flush(); jarOutStream.close(); jarSize = (int) tempJar.length(); preJarInStream = new JarInputStream(new FileInputStream(tempJar)); mFest = preJarInStream.getManifest(); atts = mFest.getMainAttributes(); atts.putValue("MIDlet-Jar-Size", "" + jarSize + 1); jarOutStream = new JarOutputStream(new FileOutputStream(outJar), mFest); while ((jarEntry = preJarInStream.getNextJarEntry()) != null) { try { jarOutStream.putNextEntry(jarEntry); } catch (ZipException ze) { continue; } int read; while ((read = preJarInStream.read(buffer)) != -1) { jarOutStream.write(buffer, 0, read); } jarOutStream.closeEntry(); } jarOutStream.flush(); preJarInStream.close(); jarOutStream.close(); } catch (FileNotFoundException ex) { ex.printStackTrace(); } catch (IOException ioe) { ioe.printStackTrace(); } } | 18,738 |
0 | @Test public void testCopy_readerToOutputStream_Encoding_nullOut() throws Exception { InputStream in = new ByteArrayInputStream(inData); in = new YellOnCloseInputStreamTest(in); Reader reader = new InputStreamReader(in, "US-ASCII"); try { IOUtils.copy(reader, (OutputStream) null, "UTF16"); fail(); } catch (NullPointerException ex) { } } | public static String encryptPass(String pass) { String passEncrypt; MessageDigest md5 = null; try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException ex) { } md5.update(pass.getBytes()); BigInteger dis = new BigInteger(1, md5.digest()); passEncrypt = dis.toString(16); return passEncrypt; } | 18,739 |
1 | private String getResourceAsString(final String name) throws IOException { final InputStream is = JiBXTestCase.class.getResourceAsStream(name); final ByteArrayOutputStream baos = new ByteArrayOutputStream(); IOUtils.copyAndClose(is, baos); return baos.toString(); } | public static void copyTo(File src, File dest) throws IOException { if (src.equals(dest)) throw new IOException("copyTo src==dest file"); FileOutputStream fout = new FileOutputStream(dest); InputStream in = new FileInputStream(src); IOUtils.copyTo(in, fout); fout.flush(); fout.close(); in.close(); } | 18,740 |
1 | public static void main(String[] args) throws Exception { TripleDES tdes = new TripleDES(); StreamBlockReader reader = new StreamBlockReader(new FileInputStream("D:\\testTDESENC.txt")); StreamBlockWriter writer = new StreamBlockWriter(new FileOutputStream("D:\\testTDESDEC.txt")); SingleKey key = new SingleKey(new Block(128), ""); key = new SingleKey(new Block("01011101110000101001100111001011101000001110111101001001101101101101100000011101100100110000101100001110000001111101001101001101"), ""); Mode mode = new ECBTripleDESMode(tdes); tdes.decrypt(reader, writer, key, mode); } | public void adjustPadding(File file, int paddingSize, long audioStart) throws FileNotFoundException, IOException { logger.finer("Need to move audio file to accomodate tag"); FileChannel fcIn = null; FileChannel fcOut; ByteBuffer paddingBuffer = ByteBuffer.wrap(new byte[paddingSize]); File paddedFile; try { paddedFile = File.createTempFile(Utils.getMinBaseFilenameAllowedForTempFile(file), ".new", file.getParentFile()); logger.finest("Created temp file:" + paddedFile.getName() + " for " + file.getName()); } catch (IOException ioe) { logger.log(Level.SEVERE, ioe.getMessage(), ioe); if (ioe.getMessage().equals(FileSystemMessage.ACCESS_IS_DENIED.getMsg())) { logger.severe(ErrorMessage.GENERAL_WRITE_FAILED_TO_CREATE_TEMPORARY_FILE_IN_FOLDER.getMsg(file.getName(), file.getParentFile().getPath())); throw new UnableToCreateFileException(ErrorMessage.GENERAL_WRITE_FAILED_TO_CREATE_TEMPORARY_FILE_IN_FOLDER.getMsg(file.getName(), file.getParentFile().getPath())); } else { logger.severe(ErrorMessage.GENERAL_WRITE_FAILED_TO_CREATE_TEMPORARY_FILE_IN_FOLDER.getMsg(file.getName(), file.getParentFile().getPath())); throw new UnableToCreateFileException(ErrorMessage.GENERAL_WRITE_FAILED_TO_CREATE_TEMPORARY_FILE_IN_FOLDER.getMsg(file.getName(), file.getParentFile().getPath())); } } try { fcOut = new FileOutputStream(paddedFile).getChannel(); } catch (FileNotFoundException ioe) { logger.log(Level.SEVERE, ioe.getMessage(), ioe); logger.severe(ErrorMessage.GENERAL_WRITE_FAILED_TO_MODIFY_TEMPORARY_FILE_IN_FOLDER.getMsg(file.getName(), file.getParentFile().getPath())); throw new UnableToModifyFileException(ErrorMessage.GENERAL_WRITE_FAILED_TO_MODIFY_TEMPORARY_FILE_IN_FOLDER.getMsg(file.getName(), file.getParentFile().getPath())); } try { fcIn = new FileInputStream(file).getChannel(); long written = fcOut.write(paddingBuffer); logger.finer("Copying:" + (file.length() - audioStart) + "bytes"); long audiolength = file.length() - audioStart; if (audiolength <= MAXIMUM_WRITABLE_CHUNK_SIZE) { long written2 = fcIn.transferTo(audioStart, audiolength, fcOut); logger.finer("Written padding:" + written + " Data:" + written2); if (written2 != audiolength) { throw new RuntimeException(ErrorMessage.MP3_UNABLE_TO_ADJUST_PADDING.getMsg(audiolength, written2)); } } else { long noOfChunks = audiolength / MAXIMUM_WRITABLE_CHUNK_SIZE; long lastChunkSize = audiolength % MAXIMUM_WRITABLE_CHUNK_SIZE; long written2 = 0; for (int i = 0; i < noOfChunks; i++) { written2 += fcIn.transferTo(audioStart + (i * MAXIMUM_WRITABLE_CHUNK_SIZE), MAXIMUM_WRITABLE_CHUNK_SIZE, fcOut); } written2 += fcIn.transferTo(audioStart + (noOfChunks * MAXIMUM_WRITABLE_CHUNK_SIZE), lastChunkSize, fcOut); logger.finer("Written padding:" + written + " Data:" + written2); if (written2 != audiolength) { throw new RuntimeException(ErrorMessage.MP3_UNABLE_TO_ADJUST_PADDING.getMsg(audiolength, written2)); } } long lastModified = file.lastModified(); if (fcIn != null) { if (fcIn.isOpen()) { fcIn.close(); } } if (fcOut != null) { if (fcOut.isOpen()) { fcOut.close(); } } replaceFile(file, paddedFile); paddedFile.setLastModified(lastModified); } finally { try { if (fcIn != null) { if (fcIn.isOpen()) { fcIn.close(); } } if (fcOut != null) { if (fcOut.isOpen()) { fcOut.close(); } } } catch (Exception e) { logger.log(Level.WARNING, "Problem closing channels and locks:" + e.getMessage(), e); } } } | 18,741 |
0 | @Override protected Integer doInBackground() throws Exception { int numOfRows = 0; combinationMap = new HashMap<AnsweredQuestion, Integer>(); combinationMapReverse = new HashMap<Integer, AnsweredQuestion>(); LinkedHashSet<AnsweredQuestion> answeredQuestionSet = new LinkedHashSet<AnsweredQuestion>(); LinkedHashSet<Integer> studentSet = new LinkedHashSet<Integer>(); final String delimiter = ";"; final String typeToProcess = "F"; String line; String[] chunks = new String[9]; try { BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream(), "ISO-8859-2")); in.readLine(); while ((line = in.readLine()) != null) { chunks = line.split(delimiter); numOfRows++; if (chunks[2].equals(typeToProcess)) { answeredQuestionSet.add(new AnsweredQuestion(chunks[4], chunks[5])); studentSet.add(new Integer(chunks[0])); } } in.close(); int i = 0; Integer I; for (AnsweredQuestion pair : answeredQuestionSet) { I = new Integer(i++); combinationMap.put(pair, I); combinationMapReverse.put(I, pair); } matrix = new SparseObjectMatrix2D(answeredQuestionSet.size(), studentSet.size()); int lastStudentNumber = -1; AnsweredQuestion pair; in = new BufferedReader(new InputStreamReader(url.openStream(), "ISO-8859-2")); in.readLine(); while ((line = in.readLine()) != null) { chunks = line.split(delimiter); pair = null; if (chunks[2].equals(typeToProcess)) { if (Integer.parseInt(chunks[0]) != lastStudentNumber) { lastStudentNumber++; } pair = new AnsweredQuestion(chunks[4], chunks[5]); if (combinationMap.containsKey(pair)) { matrix.setQuick(combinationMap.get(pair), lastStudentNumber, Boolean.TRUE); } } } } catch (UnsupportedEncodingException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } supportVector = new int[combinationMap.size()]; ObjectMatrix1D row = null; for (int i = 0; i < combinationMap.size(); i++) { row = matrix.viewRow(i); int sum = 0; for (int k = 0; k < row.size(); k++) { if (row.getQuick(k) != null && row.getQuick(k).equals(Boolean.TRUE)) { sum++; } } supportVector[i] = sum; } applet.combinationMap = this.combinationMap; applet.combinationMapReverse = this.combinationMapReverse; applet.matrix = this.matrix; applet.supportVector = supportVector; System.out.println("data loaded."); return null; } | public static boolean checkEncryptedPassword(String md5key, String passwordAccount, String encryptedPassword, int passwdenc) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md = MessageDigest.getInstance(Constants.ALGORITHM); switch(passwdenc) { case 1: md.update((md5key + encryptedPassword).getBytes("8859_1")); return md.digest().equals(passwordAccount.getBytes("8859_1")); case 2: md.update((encryptedPassword + md5key).getBytes("8859_1")); return md.digest().equals(passwordAccount.getBytes("8859_1")); default: return false; } } | 18,742 |
1 | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | public boolean open(String mode) { if (source instanceof String) return false; else if (mode == null) mode = ""; else mode = mode.toLowerCase(); boolean toread = false, towrite = false; if (mode.indexOf("r") >= 0) toread = true; if (mode.indexOf("w") >= 0) towrite = true; if (!toread && !towrite) toread = towrite = true; try { if (toread && input == null) { if (isDirectory()) return true; else if (reader != null) return true; else if (source instanceof File) input = new FileInputStream((File) source); else if (source instanceof Socket) input = ((Socket) source).getInputStream(); else if (source instanceof URL) return getUrlInfo(toread, towrite); else return false; } if (towrite && output == null) { if (isDirectory()) return false; else if (writer != null) return true; else if (source instanceof File) output = new FileOutputStream((File) source); else if (source instanceof Socket) output = ((Socket) source).getOutputStream(); else if (source instanceof URL) return getUrlInfo(toread, towrite); else return false; } return true; } catch (Exception e) { return false; } } | 18,743 |
0 | public int saveRoom(String name, String icon, String stringid) { DBConnection con = null; int categoryId = -1; try { con = DBServiceManager.allocateConnection(); con.setAutoCommit(false); String query = "INSERT INTO cafe_Chat_Category " + "(cafe_Chat_Category_pid,cafe_Chat_Category_name, cafe_Chat_Category_icon) " + "VALUES (null,?,?) "; PreparedStatement ps = con.prepareStatement(query); ps.setString(1, name); ps.setString(2, icon); ps.executeUpdate(); query = "SELECT cafe_Chat_Category_id FROM cafe_Chat_Category " + "WHERE cafe_Chat_Category_name=? "; ps = con.prepareStatement(query); ps.setString(1, name); ResultSet rs = ps.executeQuery(); if (rs.next()) { query = "INSERT INTO cafe_Chatroom (cafe_chatroom_category, cafe_chatroom_name, cafe_chatroom_stringid) " + "VALUES (?,?,?) "; ps = con.prepareStatement(query); ps.setInt(1, rs.getInt("cafe_Chat_Category_id")); categoryId = rs.getInt("cafe_Chat_Category_id"); ps.setString(2, name); ps.setString(3, stringid); ps.executeUpdate(); } con.commit(); con.setAutoCommit(true); } catch (SQLException e) { try { con.rollback(); } catch (SQLException sqle) { } } finally { if (con != null) con.release(); } return categoryId; } | public static boolean copyFileToDir(File inputFile, File outputDir) { try { String outputFileName = inputFile.getName(); int index = 1; while (existFileInDir(outputFileName, outputDir)) { outputFileName = index + inputFile.getName(); index++; } String directory = getDirectoryWithSlash(outputDir.getAbsolutePath()); File outputFile = new File(directory + outputFileName); FileReader in = new FileReader(inputFile); FileWriter out = new FileWriter(outputFile); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); } catch (IOException e) { return false; } return true; } | 18,744 |
1 | public String execute(HttpServletRequest request, HttpServletResponse response, User user, String parameter) throws Exception { long resourceId = ServletRequestUtils.getLongParameter(request, "resourceId", 0L); BinaryAttribute binaryAttribute = resourceManager.readAttribute(resourceId, parameter, user); response.addHeader("Content-Disposition", "attachment; filename=\"" + binaryAttribute.getName() + '"'); String contentType = binaryAttribute.getContentType(); if (contentType != null) { if ("application/x-zip-compressed".equalsIgnoreCase(contentType)) { response.setContentType("application/octet-stream"); } else { response.setContentType(contentType); } } else { response.setContentType("application/octet-stream"); } IOUtils.copy(binaryAttribute.getInputStream(), response.getOutputStream()); return null; } | private void performDownload() { List<String> selected = filesPane.getSelectedValuesList(); if (selected == null || selected.isEmpty() || selected.size() != 1) { JOptionPane.showMessageDialog(this, "Please select one path"); return; } RFile file = new RFile(selected.get(0)); if (!file.isFile()) { JOptionPane.showMessageDialog(this, "file does not exist anymore"); return; } chooser.setSelectedFile(new File(chooser.getCurrentDirectory(), file.getName())); int ok = chooser.showSaveDialog(this); if (ok != JFileChooser.APPROVE_OPTION) { return; } FileOutputStream fout = null; RFileInputStream in = null; try { fout = new FileOutputStream(chooser.getSelectedFile()); in = new RFileInputStream(file); IOUtils.copy(in, fout); JOptionPane.showMessageDialog(this, "File downloaded to " + chooser.getSelectedFile(), "Download finished", JOptionPane.INFORMATION_MESSAGE); } catch (IOException iOException) { JOptionPane.showMessageDialog(this, "Error: " + iOException, "Error", JOptionPane.ERROR_MESSAGE); } finally { if (in != null) { try { in.close(); } catch (Throwable t) { } } if (fout != null) { try { fout.close(); } catch (Throwable t) { } } } } | 18,745 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 18,746 |
1 | public ActualTask(TEditor editor, TIGDataBase dataBase, String directoryPath, String myImagesBehaviour) { File myDirectory = new File(directoryPath); String[] list = myDirectory.list(); File fileXML = new File(directoryPath + "images.xml"); SAXBuilder builder = new SAXBuilder(false); try { Document docXML = builder.build(fileXML); Element root = docXML.getRootElement(); List images = root.getChildren("image"); Iterator j = images.iterator(); int i = 0; TIGDataBase.activateTransactions(); while (j.hasNext() && !stop && !cancel) { current = i; i++; Element image = (Element) j.next(); String name = image.getAttributeValue("name"); List categories = image.getChildren("category"); Iterator k = categories.iterator(); if (exists(list, name)) { String pathSrc = directoryPath.concat(name); String pathDst = System.getProperty("user.dir") + File.separator + "images" + File.separator + name.substring(0, 1).toUpperCase() + File.separator; String folder = System.getProperty("user.dir") + File.separator + "images" + File.separator + name.substring(0, 1).toUpperCase(); if (myImagesBehaviour.equals(TLanguage.getString("TIGImportDBDialog.REPLACE_IMAGES"))) { Vector<Vector<String>> aux = TIGDataBase.imageSearchByName(name.substring(0, name.lastIndexOf('.'))); if (aux.size() != 0) { int idImage = TIGDataBase.imageKeySearchName(name.substring(0, name.lastIndexOf('.'))); TIGDataBase.deleteAsociatedOfImage(idImage); } pathDst = pathDst.concat(name); } if (myImagesBehaviour.equals(TLanguage.getString("TIGImportDBDialog.ADD_IMAGES"))) { Vector aux = new Vector(); aux = TIGDataBase.imageSearchByName(name.substring(0, name.lastIndexOf('.'))); int fileCount = 0; if (aux.size() != 0) { while (aux.size() != 0) { fileCount++; aux = TIGDataBase.imageSearchByName(name.substring(0, name.lastIndexOf('.')) + "_" + fileCount); } pathDst = pathDst + name.substring(0, name.lastIndexOf('.')) + '_' + fileCount + name.substring(name.lastIndexOf('.'), name.length()); name = name.substring(0, name.lastIndexOf('.')) + '_' + fileCount + name.substring(name.lastIndexOf('.'), name.length()); } else { pathDst = pathDst.concat(name); } } String pathThumbnail = (pathDst.substring(0, pathDst.lastIndexOf("."))).concat("_th.jpg"); File newDirectoryFolder = new File(folder); if (!newDirectoryFolder.exists()) { newDirectoryFolder.mkdirs(); } try { FileChannel srcChannel = new FileInputStream(pathSrc).getChannel(); FileChannel dstChannel = new FileOutputStream(pathDst).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } catch (IOException exc) { System.out.println(exc.getMessage()); System.out.println(exc.toString()); } TIGDataBase.insertImageDB(name.substring(0, name.lastIndexOf('.')), name); int idImage = TIGDataBase.imageKeySearchName(name.substring(0, name.lastIndexOf('.'))); while (k.hasNext()) { Element category = (Element) k.next(); int idCategory = TIGDataBase.insertConceptDB(category.getValue()); TIGDataBase.insertAsociatedDB(idCategory, idImage); } } else { errorImages = errorImages + System.getProperty("line.separator") + name; } } TIGDataBase.executeQueries(); current = lengthOfTask; } catch (JDOMException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } } | private static void createNonCompoundData(String dir, String type) { try { Set s = new HashSet(); File nouns = new File(dir + "index." + type); FileInputStream fis = new FileInputStream(nouns); InputStreamReader reader = new InputStreamReader(fis); StringBuffer sb = new StringBuffer(); int chr = reader.read(); while (chr >= 0) { if (chr == '\n' || chr == '\r') { String line = sb.toString(); if (line.length() > 0) { if (line.charAt(0) != ' ') { String[] spaceSplit = PerlHelp.split(line); if (spaceSplit[0].indexOf('_') < 0) { s.add(spaceSplit[0]); } } } sb.setLength(0); } else { sb.append((char) chr); } chr = reader.read(); } System.out.println(type + " size=" + s.size()); File output = new File(dir + "nonCompound." + type + "s.gz"); FileOutputStream fos = new FileOutputStream(output); GZIPOutputStream gzos = new GZIPOutputStream(new BufferedOutputStream(fos)); PrintWriter writer = new PrintWriter(gzos); writer.println("# This file was extracted from WordNet data, the following copyright notice"); writer.println("# from WordNet is attached."); writer.println("#"); writer.println("# This software and database is being provided to you, the LICENSEE, by "); writer.println("# Princeton University under the following license. By obtaining, using "); writer.println("# and/or copying this software and database, you agree that you have "); writer.println("# read, understood, and will comply with these terms and conditions.: "); writer.println("# "); writer.println("# Permission to use, copy, modify and distribute this software and "); writer.println("# database and its documentation for any purpose and without fee or "); writer.println("# royalty is hereby granted, provided that you agree to comply with "); writer.println("# the following copyright notice and statements, including the disclaimer, "); writer.println("# and that the same appear on ALL copies of the software, database and "); writer.println("# documentation, including modifications that you make for internal "); writer.println("# use or for distribution. "); writer.println("# "); writer.println("# WordNet 1.7 Copyright 2001 by Princeton University. All rights reserved. "); writer.println("# "); writer.println("# THIS SOFTWARE AND DATABASE IS PROVIDED \"AS IS\" AND PRINCETON "); writer.println("# UNIVERSITY MAKES NO REPRESENTATIONS OR WARRANTIES, EXPRESS OR "); writer.println("# IMPLIED. BY WAY OF EXAMPLE, BUT NOT LIMITATION, PRINCETON "); writer.println("# UNIVERSITY MAKES NO REPRESENTATIONS OR WARRANTIES OF MERCHANT- "); writer.println("# ABILITY OR FITNESS FOR ANY PARTICULAR PURPOSE OR THAT THE USE "); writer.println("# OF THE LICENSED SOFTWARE, DATABASE OR DOCUMENTATION WILL NOT "); writer.println("# INFRINGE ANY THIRD PARTY PATENTS, COPYRIGHTS, TRADEMARKS OR "); writer.println("# OTHER RIGHTS. "); writer.println("# "); writer.println("# The name of Princeton University or Princeton may not be used in"); writer.println("# advertising or publicity pertaining to distribution of the software"); writer.println("# and/or database. Title to copyright in this software, database and"); writer.println("# any associated documentation shall at all times remain with"); writer.println("# Princeton University and LICENSEE agrees to preserve same. "); for (Iterator i = s.iterator(); i.hasNext(); ) { String mwe = (String) i.next(); writer.println(mwe); } writer.close(); } catch (Exception e) { e.printStackTrace(); } } | 18,747 |
0 | public String postData(String result, DefaultHttpClient httpclient) { try { HttpPost post = new HttpPost("http://3dforandroid.appspot.com/api/v1/note/create"); StringEntity se = new StringEntity(result); se.setContentEncoding(HTTP.UTF_8); se.setContentType("application/json"); post.setEntity(se); post.setHeader("Content-Type", "application/json"); post.setHeader("Accept", "*/*"); HttpResponse response = httpclient.execute(post); HttpEntity entity = response.getEntity(); InputStream instream; instream = entity.getContent(); responseMessage = read(instream); } catch (IllegalStateException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } return responseMessage; } | private File copyFromURL(URL url, String dir) throws IOException { File urlFile = new File(url.getFile()); File dest = new File(dir, urlFile.getName()); logger.log("Extracting " + urlFile.getName() + " to " + dir + "..."); FileOutputStream os = new FileOutputStream(dest); InputStream is = url.openStream(); byte data[] = new byte[4096]; int ct; while ((ct = is.read(data)) >= 0) os.write(data, 0, ct); is.close(); os.close(); logger.log("ok\n"); return dest; } | 18,748 |
1 | private void displayDiffResults() throws IOException { File outFile = File.createTempFile("diff", ".htm"); outFile.deleteOnExit(); FileOutputStream outStream = new FileOutputStream(outFile); BufferedWriter out = new BufferedWriter(new OutputStreamWriter(outStream)); out.write("<html><head><title>LOC Differences</title>\n" + SCRIPT + "</head>\n" + "<body bgcolor='#ffffff'>\n" + "<div onMouseOver=\"window.defaultStatus='Metrics'\">\n"); if (addedTable.length() > 0) { out.write("<table border><tr><th>Files Added:</th>" + "<th>Add</th><th>Type</th></tr>"); out.write(addedTable.toString()); out.write("</table><br><br>"); } if (modifiedTable.length() > 0) { out.write("<table border><tr><th>Files Modified:</th>" + "<th>Base</th><th>Del</th><th>Mod</th><th>Add</th>" + "<th>Total</th><th>Type</th></tr>"); out.write(modifiedTable.toString()); out.write("</table><br><br>"); } if (deletedTable.length() > 0) { out.write("<table border><tr><th>Files Deleted:</th>" + "<th>Del</th><th>Type</th></tr>"); out.write(deletedTable.toString()); out.write("</table><br><br>"); } out.write("<table name=METRICS BORDER>\n"); if (modifiedTable.length() > 0 || deletedTable.length() > 0) { out.write("<tr><td>Base: </td><td>"); out.write(Long.toString(base)); out.write("</td></tr>\n<tr><td>Deleted: </td><td>"); out.write(Long.toString(deleted)); out.write("</td></tr>\n<tr><td>Modified: </td><td>"); out.write(Long.toString(modified)); out.write("</td></tr>\n<tr><td>Added: </td><td>"); out.write(Long.toString(added)); out.write("</td></tr>\n<tr><td>New & Changed: </td><td>"); out.write(Long.toString(added + modified)); out.write("</td></tr>\n"); } out.write("<tr><td>Total: </td><td>"); out.write(Long.toString(total)); out.write("</td></tr>\n</table></div>"); redlinesOut.close(); out.flush(); InputStream redlines = new FileInputStream(redlinesTempFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = redlines.read(buffer)) != -1) outStream.write(buffer, 0, bytesRead); outStream.write("</BODY></HTML>".getBytes()); outStream.close(); Browser.launch(outFile.toURL().toString()); } | public RepeatStatus execute(StepContribution contribution, ChunkContext chunkContext) throws Exception { ZipInputStream zis = new ZipInputStream(new BufferedInputStream(inputResource.getInputStream())); File targetDirectoryAsFile = new File(targetDirectory); if (!targetDirectoryAsFile.exists()) { FileUtils.forceMkdir(targetDirectoryAsFile); } File target = new File(targetDirectory, targetFile); BufferedOutputStream dest = null; while (zis.getNextEntry() != null) { if (!target.exists()) { target.createNewFile(); } FileOutputStream fos = new FileOutputStream(target); dest = new BufferedOutputStream(fos); IOUtils.copy(zis, dest); dest.flush(); dest.close(); } zis.close(); if (!target.exists()) { throw new IllegalStateException("Could not decompress anything from the archive!"); } return RepeatStatus.FINISHED; } | 18,749 |
1 | private String writeInputStreamToString(InputStream stream) { StringWriter stringWriter = new StringWriter(); try { IOUtils.copy(stream, stringWriter); } catch (IOException e) { e.printStackTrace(); } String namespaces = stringWriter.toString().trim(); return namespaces; } | public static void copy(final File src, File dst, final boolean overwrite) throws IOException, IllegalArgumentException { if (!src.isFile() || !src.exists()) { throw new IllegalArgumentException("Source file '" + src.getAbsolutePath() + "' not found!"); } if (dst.exists()) { if (dst.isDirectory()) { dst = new File(dst, src.getName()); } else if (dst.isFile()) { if (!overwrite) { throw new IllegalArgumentException("Destination file '" + dst.getAbsolutePath() + "' already exists!"); } } else { throw new IllegalArgumentException("Invalid destination object '" + dst.getAbsolutePath() + "'!"); } } final File dstParent = dst.getParentFile(); if (!dstParent.exists()) { if (!dstParent.mkdirs()) { throw new IOException("Failed to create directory " + dstParent.getAbsolutePath()); } } long fileSize = src.length(); if (fileSize > 20971520l) { final FileInputStream in = new FileInputStream(src); final FileOutputStream out = new FileOutputStream(dst); try { int doneCnt = -1; final int bufSize = 32768; final byte buf[] = new byte[bufSize]; while ((doneCnt = in.read(buf, 0, bufSize)) >= 0) { if (doneCnt == 0) { Thread.yield(); } else { out.write(buf, 0, doneCnt); } } out.flush(); } finally { try { in.close(); } catch (final IOException e) { } try { out.close(); } catch (final IOException e) { } } } else { final FileInputStream fis = new FileInputStream(src); final FileOutputStream fos = new FileOutputStream(dst); final FileChannel in = fis.getChannel(), out = fos.getChannel(); try { long offs = 0, doneCnt = 0; final long copyCnt = Math.min(65536, fileSize); do { doneCnt = in.transferTo(offs, copyCnt, out); offs += doneCnt; fileSize -= doneCnt; } while (fileSize > 0); } finally { try { in.close(); } catch (final IOException e) { } try { out.close(); } catch (final IOException e) { } try { fis.close(); } catch (final IOException e) { } try { fos.close(); } catch (final IOException e) { } } } } | 18,750 |
0 | @SuppressWarnings("unchecked") protected void processTransformAction(HttpServletRequest request, HttpServletResponse response, String action) throws Exception { File transformationFile = null; String tr = request.getParameter(Definitions.REQUEST_PARAMNAME_XSLT); if (StringUtils.isNotBlank(tr)) { transformationFile = new File(xslBase, tr); if (!transformationFile.isFile()) { response.sendError(HttpServletResponse.SC_BAD_REQUEST, "Parameter \"" + Definitions.REQUEST_PARAMNAME_XSLT + "\" " + "with value \"" + tr + "\" refers to non existing file"); return; } } StreamResult result; ByteArrayOutputStream baos = null; if (isDevelopmentMode) { baos = new ByteArrayOutputStream(); if (StringUtils.equals(action, "get")) { result = new StreamResult(new Base64.OutputStream(baos, Base64.DECODE)); } else { result = new StreamResult(baos); } } else { if (StringUtils.equals(action, "get")) { result = new StreamResult(new Base64.OutputStream(response.getOutputStream(), Base64.DECODE)); } else { result = new StreamResult(response.getOutputStream()); } } HashMap<String, Object> params = new HashMap<String, Object>(); params.putAll(request.getParameterMap()); params.put("{" + Definitions.CONFIGURATION_NAMESPACE + "}configuration", configuration); params.put("{" + Definitions.REQUEST_NAMESPACE + "}request", request); params.put("{" + Definitions.RESPONSE_NAMESPACE + "}response", response); params.put("{" + Definitions.SESSION_NAMESPACE + "}session", request.getSession()); params.put("{" + Definitions.INFOFUZE_NAMESPACE + "}development-mode", new Boolean(Config.getInstance().isDevelopmentMode())); Transformer transformer = new Transformer(); transformer.setTransformationFile(transformationFile); transformer.setParams(params); transformer.setTransformMode(TransformMode.NORMAL); transformer.setConfiguration(configuration); transformer.setErrorListener(new TransformationErrorListener(response)); transformer.setLogInfo(false); String method = transformer.getOutputProperties().getProperty(OutputKeys.METHOD, "xml"); String contentType; if (method.endsWith("html")) { contentType = Definitions.MIMETYPE_HTML; } else if (method.equals("xml")) { contentType = Definitions.MIMETYPE_XML; } else { contentType = Definitions.MIMETYPE_TEXTPLAIN; } String encoding = transformer.getOutputProperties().getProperty(OutputKeys.ENCODING, "UTF-8"); response.setContentType(contentType + ";charset=" + encoding); DataSourceIf dataSource = new NullSource(); transformer.transform((Source) dataSource, result); if (isDevelopmentMode) { IOUtils.copy(new ByteArrayInputStream(baos.toByteArray()), response.getOutputStream()); } } | public InputStream getDaoConfig(String connectionType) throws IOException { URL url = null; if (connectionType.equals(SQL.ORACLE)) { url = com.apelon.dts.db.admin.config.MigrateConfig.class.getResource("oracle.xml"); } else if (connectionType.equals(SQL.SQL2K)) { url = com.apelon.dts.db.admin.config.MigrateConfig.class.getResource("sql2k.xml"); } return url.openStream(); } | 18,751 |
0 | public void run() { try { System.out.println("Setting page on Cobra"); SimpleHtmlRendererContext rendererContext = new SimpleHtmlRendererContext(htmlPanel, new SimpleUserAgentContext()); int nodeBaseEnd = furl.indexOf("/", 10); if (nodeBaseEnd == -1) nodeBaseEnd = furl.length(); String nodeBase = furl.substring(0, nodeBaseEnd); InputStream pageStream = new URL(furl).openStream(); BufferedReader pageStreamReader = new BufferedReader(new InputStreamReader(pageStream)); String pageContent = ""; String line; while ((line = pageStreamReader.readLine()) != null) pageContent += line; pageContent = borderImages(pageContent, nodeBase); htmlPanel.setHtml(pageContent, furl, rendererContext); } catch (Exception e) { System.out.println("Error loading page " + furl + " : " + e); } } | @SuppressWarnings("finally") private void compress(File src) throws IOException { if (this.switches.contains(Switch.test)) return; checkSourceFile(src); if (src.getPath().endsWith(".bz2")) { this.log.println("WARNING: skipping file because it already has .bz2 suffix:").println(src); return; } final File dst = new File(src.getPath() + ".bz2").getAbsoluteFile(); if (!checkDestFile(dst)) return; FileChannel inChannel = null; FileChannel outChannel = null; FileOutputStream fileOut = null; BZip2OutputStream bzOut = null; FileLock inLock = null; FileLock outLock = null; try { inChannel = new FileInputStream(src).getChannel(); final long inSize = inChannel.size(); inLock = inChannel.tryLock(0, inSize, true); if (inLock == null) throw error("source file locked by another process: " + src); fileOut = new FileOutputStream(dst); outChannel = fileOut.getChannel(); bzOut = new BZip2OutputStream( new BufferedXOutputStream(fileOut, 8192), Math.min( (this.blockSize == -1) ? BZip2OutputStream.MAX_BLOCK_SIZE : this.blockSize, BZip2OutputStream.chooseBlockSize(inSize) ) ); outLock = outChannel.tryLock(); if (outLock == null) throw error("destination file locked by another process: " + dst); final boolean showProgress = this.switches.contains(Switch.showProgress); long pos = 0; int progress = 0; if (showProgress || this.verbose) { this.log.print("source: " + src).print(": size=").println(inSize); this.log.println("target: " + dst); } while (true) { final long maxStep = showProgress ? Math.max(8192, (inSize - pos) / MAX_PROGRESS) : (inSize - pos); if (maxStep <= 0) { if (showProgress) { for (int i = progress; i < MAX_PROGRESS; i++) this.log.print('#'); this.log.println(" done"); } break; } else { final long step = inChannel.transferTo(pos, maxStep, bzOut); if ((step == 0) && (inChannel.size() != inSize)) throw error("file " + src + " has been modified concurrently by another process"); pos += step; if (showProgress) { final double p = (double) pos / (double) inSize; final int newProgress = (int) (MAX_PROGRESS * p); for (int i = progress; i < newProgress; i++) this.log.print('#'); progress = newProgress; } } } inLock.release(); inChannel.close(); bzOut.closeInstance(); final long outSize = outChannel.position(); outChannel.truncate(outSize); outLock.release(); fileOut.close(); if (this.verbose) { final double ratio = (inSize == 0) ? (outSize * 100) : ((double) outSize / (double) inSize); this.log.print("raw size: ").print(inSize) .print("; compressed size: ").print(outSize) .print("; compression ratio: ").print(ratio).println('%'); } if (!this.switches.contains(Switch.keep)) { if (!src.delete()) throw error("unable to delete sourcefile: " + src); } } catch (final IOException ex) { IO.tryClose(inChannel); IO.tryClose(bzOut); IO.tryClose(fileOut); IO.tryRelease(inLock); IO.tryRelease(outLock); try { this.log.println(); } finally { throw ex; } } } | 18,752 |
1 | ServiceDescription getServiceDescription() throws ConfigurationException { final XPath pathsXPath = this.xPathFactory.newXPath(); try { final Node serviceDescriptionNode = (Node) pathsXPath.evaluate(ConfigurationFileTagsV1.SERVICE_DESCRIPTION_ELEMENT_XPATH, this.configuration, XPathConstants.NODE); final String title = getMandatoryElementText(serviceDescriptionNode, ConfigurationFileTagsV1.TITLE_ELEMENT); ServiceDescription.Builder builder = new ServiceDescription.Builder(title, Migrate.class.getCanonicalName()); Property[] serviceProperties = getServiceProperties(serviceDescriptionNode); builder.author(getMandatoryElementText(serviceDescriptionNode, ConfigurationFileTagsV1.CREATOR_ELEMENT)); builder.classname(this.canonicalServiceName); builder.description(getOptionalElementText(serviceDescriptionNode, ConfigurationFileTagsV1.DESCRIPTION_ELEMENT)); final String serviceVersion = getOptionalElementText(serviceDescriptionNode, ConfigurationFileTagsV1.VERSION_ELEMENT); final Tool toolDescription = getToolDescriptionElement(serviceDescriptionNode); String identifier = getOptionalElementText(serviceDescriptionNode, ConfigurationFileTagsV1.IDENTIFIER_ELEMENT); if (identifier == null || "".equals(identifier)) { try { final MessageDigest identDigest = MessageDigest.getInstance("MD5"); identDigest.update(this.canonicalServiceName.getBytes()); final String versionInfo = (serviceVersion != null) ? serviceVersion : ""; identDigest.update(versionInfo.getBytes()); final URI toolIDURI = toolDescription.getIdentifier(); final String toolIdentifier = toolIDURI == null ? "" : toolIDURI.toString(); identDigest.update(toolIdentifier.getBytes()); final BigInteger md5hash = new BigInteger(identDigest.digest()); identifier = md5hash.toString(16); } catch (NoSuchAlgorithmException nsae) { throw new RuntimeException(nsae); } } builder.identifier(identifier); builder.version(serviceVersion); builder.tool(toolDescription); builder.instructions(getOptionalElementText(serviceDescriptionNode, ConfigurationFileTagsV1.INSTRUCTIONS_ELEMENT)); builder.furtherInfo(getOptionalURIElement(serviceDescriptionNode, ConfigurationFileTagsV1.FURTHER_INFO_ELEMENT)); builder.logo(getOptionalURIElement(serviceDescriptionNode, ConfigurationFileTagsV1.LOGO_ELEMENT)); builder.serviceProvider(this.serviceProvider); final DBMigrationPathFactory migrationPathFactory = new DBMigrationPathFactory(this.configuration); final MigrationPaths migrationPaths = migrationPathFactory.getAllMigrationPaths(); builder.paths(MigrationPathConverter.toPlanetsPaths(migrationPaths)); builder.inputFormats(migrationPaths.getInputFormatURIs().toArray(new URI[0])); builder.parameters(getUniqueParameters(migrationPaths)); builder.properties(serviceProperties); return builder.build(); } catch (XPathExpressionException xPathExpressionException) { throw new ConfigurationException(String.format("Failed parsing the '%s' element in the '%s' element.", ConfigurationFileTagsV1.SERVICE_DESCRIPTION_ELEMENT_XPATH, this.configuration.getNodeName()), xPathExpressionException); } catch (NullPointerException nullPointerException) { throw new ConfigurationException(String.format("Failed parsing the '%s' element in the '%s' element.", ConfigurationFileTagsV1.SERVICE_DESCRIPTION_ELEMENT_XPATH, this.configuration.getNodeName()), nullPointerException); } } | @SuppressWarnings("unused") private static int chkPasswd(final String sInputPwd, final String sSshaPwd) { assert sInputPwd != null; assert sSshaPwd != null; int r = ERR_LOGIN_ACCOUNT; try { BASE64Decoder decoder = new BASE64Decoder(); byte[] ba = decoder.decodeBuffer(sSshaPwd); assert ba.length >= FIXED_HASH_SIZE; byte[] hash = new byte[FIXED_HASH_SIZE]; byte[] salt = new byte[FIXED_SALT_SIZE]; System.arraycopy(ba, 0, hash, 0, FIXED_HASH_SIZE); System.arraycopy(ba, FIXED_HASH_SIZE, salt, 0, FIXED_SALT_SIZE); MessageDigest md = MessageDigest.getInstance("SHA-1"); md.update(sInputPwd.getBytes()); md.update(salt); byte[] baPwdHash = md.digest(); if (MessageDigest.isEqual(hash, baPwdHash)) { r = ERR_LOGIN_OK; } } catch (Exception exc) { exc.printStackTrace(); } return r; } | 18,753 |
1 | public static final int executeSql(final Connection conn, final String sql, final boolean rollback) throws SQLException { if (null == sql) return 0; Statement stmt = null; try { stmt = conn.createStatement(); final int updated = stmt.executeUpdate(sql); return updated; } catch (final SQLException e) { if (rollback) conn.rollback(); throw e; } finally { closeAll(null, stmt, null); } } | public void reset(int currentPilot) { try { PreparedStatement psta = jdbc.prepareStatement("DELETE FROM component_prop " + "WHERE pilot_id = ? "); psta.setInt(1, currentPilot); psta.executeUpdate(); jdbc.commit(); } catch (SQLException e) { jdbc.rollback(); log.debug(e); } } | 18,754 |
0 | public void bubble() { boolean test = false; int kars = 0, tas = 0; while (true) { for (int j = 0; j < dizi.length - 1; j++) { kars++; if (dizi[j] > dizi[j + 1]) { int temp = dizi[j]; dizi[j] = dizi[j + 1]; dizi[j + 1] = temp; test = true; tas++; } } if (!test) { break; } else { test = false; } } System.out.print(kars + " " + tas); } | public static String crypt(String password, String salt) { if (salt.startsWith(magic)) { salt = salt.substring(magic.length()); } int saltEnd = salt.indexOf('$'); if (saltEnd != -1) { salt = salt.substring(0, saltEnd); } if (salt.length() > 8) { salt = salt.substring(0, 8); } MessageDigest md5_1, md5_2; try { md5_1 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); return null; } md5_1.update(password.getBytes()); md5_1.update(magic.getBytes()); md5_1.update(salt.getBytes()); try { md5_2 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); return null; } md5_2.update(password.getBytes()); md5_2.update(salt.getBytes()); md5_2.update(password.getBytes()); byte[] md5_2_digest = md5_2.digest(); int md5Size = md5_2_digest.length; int pwLength = password.length(); for (int i = pwLength; i > 0; i -= md5Size) { md5_1.update(md5_2_digest, 0, i > md5Size ? md5Size : i); } md5_2.reset(); byte[] pwBytes = password.getBytes(); for (int i = pwLength; i > 0; i >>= 1) { if ((i & 1) == 1) { md5_1.update((byte) 0); } else { md5_1.update(pwBytes[0]); } } StringBuffer output = new StringBuffer(magic); output.append(salt); output.append("$"); byte[] md5_1_digest = md5_1.digest(); byte[] saltBytes = salt.getBytes(); for (int i = 0; i < 1000; i++) { md5_2.reset(); if ((i & 1) == 1) { md5_2.update(pwBytes); } else { md5_2.update(md5_1_digest); } if (i % 3 != 0) { md5_2.update(saltBytes); } if (i % 7 != 0) { md5_2.update(pwBytes); } if ((i & 1) != 0) { md5_2.update(md5_1_digest); } else { md5_2.update(pwBytes); } md5_1_digest = md5_2.digest(); } int value; value = ((md5_1_digest[0] & 0xff) << 16) | ((md5_1_digest[6] & 0xff) << 8) | (md5_1_digest[12] & 0xff); output.append(cryptTo64(value, 4)); value = ((md5_1_digest[1] & 0xff) << 16) | ((md5_1_digest[7] & 0xff) << 8) | (md5_1_digest[13] & 0xff); output.append(cryptTo64(value, 4)); value = ((md5_1_digest[2] & 0xff) << 16) | ((md5_1_digest[8] & 0xff) << 8) | (md5_1_digest[14] & 0xff); output.append(cryptTo64(value, 4)); value = ((md5_1_digest[3] & 0xff) << 16) | ((md5_1_digest[9] & 0xff) << 8) | (md5_1_digest[15] & 0xff); output.append(cryptTo64(value, 4)); value = ((md5_1_digest[4] & 0xff) << 16) | ((md5_1_digest[10] & 0xff) << 8) | (md5_1_digest[5] & 0xff); output.append(cryptTo64(value, 4)); value = md5_1_digest[11] & 0xff; output.append(cryptTo64(value, 2)); md5_1 = null; md5_2 = null; md5_1_digest = null; md5_2_digest = null; pwBytes = null; saltBytes = null; password = salt = null; return output.toString(); } | 18,755 |
0 | public static int copy(File src, int amount, File dst) { final int BUFFER_SIZE = 1024; int amountToRead = amount; boolean ok = true; InputStream in = null; OutputStream out = null; try { in = new BufferedInputStream(new FileInputStream(src)); out = new BufferedOutputStream(new FileOutputStream(dst)); byte[] buf = new byte[BUFFER_SIZE]; while (amountToRead > 0) { int read = in.read(buf, 0, Math.min(BUFFER_SIZE, amountToRead)); if (read == -1) break; amountToRead -= read; out.write(buf, 0, read); } } catch (IOException e) { } finally { if (in != null) try { in.close(); } catch (IOException e) { } if (out != null) { try { out.flush(); } catch (IOException e) { } try { out.close(); } catch (IOException e) { } } } return amount - amountToRead; } | public void initialize() { if (shieldings == null) { try { URL url = ClassLoader.getSystemResource(RF); InputStreamReader isr = new InputStreamReader(url.openStream()); BufferedReader br = new BufferedReader(isr); SharcReader sr1 = new SharcReader(br); shieldings = new Hashtable(); while (sr1.hasNext()) { SharcShielding ss1 = sr1.next(); shieldings.put(ss1.getMethod(), ss1); } String[] shieldingNames = new String[shieldings.size()]; int i = 0; for (Enumeration k = shieldings.keys(); k.hasMoreElements(); ) { shieldingNames[i] = (String) k.nextElement(); i++; } dialog = new SelectSharcReference(null, shieldingNames, true); } catch (Exception ex) { shieldings = null; } } } | 18,756 |
1 | public static void copyFile(final File sourceFile, final File destFile) throws IOException { if (destFile.getParentFile() != null && !destFile.getParentFile().mkdirs()) { LOG.error("GeneralHelper.copyFile(): Cannot create parent directories from " + destFile); } FileInputStream fIn = null; FileOutputStream fOut = null; FileChannel source = null; FileChannel destination = null; try { fIn = new FileInputStream(sourceFile); source = fIn.getChannel(); fOut = new FileOutputStream(destFile); destination = fOut.getChannel(); long transfered = 0; final long bytes = source.size(); while (transfered < bytes) { transfered += destination.transferFrom(source, 0, source.size()); destination.position(transfered); } } finally { if (source != null) { source.close(); } else if (fIn != null) { fIn.close(); } if (destination != null) { destination.close(); } else if (fOut != null) { fOut.close(); } } } | public void copyFile(File sourceFile, String toDir, boolean create, boolean overwrite) throws FileNotFoundException, IOException { FileInputStream source = null; FileOutputStream destination = null; byte[] buffer; int bytes_read; File toFile = new File(toDir); if (create && !toFile.exists()) toFile.mkdirs(); if (toFile.exists()) { File destFile = new File(toDir + "/" + sourceFile.getName()); try { if (!destFile.exists() || overwrite) { source = new FileInputStream(sourceFile); destination = new FileOutputStream(destFile); buffer = new byte[1024]; while (true) { bytes_read = source.read(buffer); if (bytes_read == -1) break; destination.write(buffer, 0, bytes_read); } } } catch (Exception exx) { exx.printStackTrace(); } finally { if (source != null) try { source.close(); } catch (IOException e) { } if (destination != null) try { destination.close(); } catch (IOException e) { } } } } | 18,757 |
0 | public static String executePost(String urlStr, Map paramsMap) throws IOException { StringBuffer result = new StringBuffer(); HttpURLConnection connection = null; URL url = new URL(urlStr); connection = (HttpURLConnection) url.openConnection(); connection.setDoOutput(true); connection.setDoInput(true); connection.setRequestMethod("POST"); PrintWriter out = new PrintWriter(connection.getOutputStream()); Iterator paramKeys = paramsMap.keySet().iterator(); while (paramKeys.hasNext()) { String paramName = (String) paramKeys.next(); out.print(paramName + "=" + paramsMap.get(paramName)); if (paramKeys.hasNext()) { out.print('&'); } } out.flush(); BufferedReader in = new BufferedReader(new InputStreamReader(connection.getInputStream())); String inputLine; while ((inputLine = in.readLine()) != null) { result.append(inputLine); } in.close(); out.close(); connection.disconnect(); String msg = result.toString(); return stripOuterElement(msg); } | public void performSearch(int searchStartIndex) { int index = 0; String searchString = keywords.getText(); searchButton.setEnabled(false); if (!searchString.equals("")) { try { url = new URL(searchURL + "&num=" + maxReturns.getSelectedItem().toString() + "&start=" + searchStartIndex + "&q=" + searchString); System.out.println("Google search = " + url); InputStream input = url.openStream(); int c; while ((c = input.read()) != -1) { result = result + (char) c; } String googleResultsFile = VueUtil.getDefaultUserFolder().getAbsolutePath() + File.separatorChar + VueResources.getString("save.google.results"); FileWriter fileWriter = new FileWriter(googleResultsFile); fileWriter.write(result); fileWriter.close(); result = ""; GSP gsp = loadGSP(googleResultsFile); Iterator i = gsp.getRES().getResultList().iterator(); Vector resultVector = new Vector(); while (i.hasNext()) { Result r = (Result) i.next(); URLResource urlResource = new URLResource(r.getUrl()); if (r.getTitle() != null) urlResource.setTitle(r.getTitle().replaceAll("</*[a-zA-Z]>", "")); else urlResource.setTitle(r.getUrl().toString()); resultVector.add(urlResource); System.out.println(r.getTitle() + " " + r.getUrl()); } VueDragTree tree = new VueDragTree(resultVector.iterator(), "GoogleSearchResults"); tree.setEditable(true); tree.setRootVisible(false); googleResultsPanel.remove(jsp); jsp = new JScrollPane(tree); JPanel bottomPanel = new JPanel(new FlowLayout(FlowLayout.RIGHT, 2, 0)); bottomPanel.add(prevButton); bottomPanel.add(nextButton); googleResultsPanel.add(bottomPanel, BorderLayout.SOUTH); googleResultsPanel.add(jsp, BorderLayout.CENTER); googleResultsPanel.validate(); googlePane.setSelectedComponent(googleResultsPanel); } catch (Exception ex) { System.out.println("cannot connect google"); googleResultsPanel.remove(jsp); JPanel jp = new JPanel(new BorderLayout()); jp.setBackground(Color.WHITE); JLabel jl = new JLabel("No Match Found"); jp.add(jl, BorderLayout.NORTH); JPanel bottomPanel = new JPanel(new FlowLayout(FlowLayout.RIGHT, 2, 0)); googleResultsPanel.add(jp, BorderLayout.CENTER); googleResultsPanel.validate(); googlePane.setSelectedComponent(googleResultsPanel); } } searchButton.setEnabled(true); } | 18,758 |
1 | private boolean passwordMatches(String user, String plainPassword, String scrambledPassword) { MessageDigest md; byte[] temp_digest, pass_digest; byte[] hex_digest = new byte[35]; byte[] scrambled = scrambledPassword.getBytes(); try { md = MessageDigest.getInstance("MD5"); md.update(plainPassword.getBytes("US-ASCII")); md.update(user.getBytes("US-ASCII")); temp_digest = md.digest(); Utils.bytesToHex(temp_digest, hex_digest, 0); md.update(hex_digest, 0, 32); md.update(salt.getBytes()); pass_digest = md.digest(); Utils.bytesToHex(pass_digest, hex_digest, 3); hex_digest[0] = (byte) 'm'; hex_digest[1] = (byte) 'd'; hex_digest[2] = (byte) '5'; for (int i = 0; i < hex_digest.length; i++) { if (scrambled[i] != hex_digest[i]) { return false; } } } catch (Exception e) { logger.error(e); } return true; } | public static String getEncodedPassword(String buff) { if (buff == null) return null; String t = new String(); try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(buff.getBytes()); byte[] r = md.digest(); for (int i = 0; i < r.length; i++) { t += toHexString(r[i]); } } catch (Exception e) { e.printStackTrace(); } return t; } | 18,759 |
0 | public static String encripty(String toEncripty) { if (toEncripty != null) { try { synchronized (toEncripty) { java.security.MessageDigest md = java.security.MessageDigest.getInstance("MD5"); md.update(toEncripty.getBytes()); byte[] hash = md.digest(); StringBuffer hexString = new StringBuffer(); for (int i = 0; i < hash.length; i++) { if ((0xff & hash[i]) < 0x10) hexString.append("0" + Integer.toHexString((0xFF & hash[i]))); else hexString.append(Integer.toHexString(0xFF & hash[i])); } toEncripty = hexString.toString(); } } catch (Exception e) { e.getMessage(); } } return toEncripty; } | public static String getUrl(String url) { BufferedInputStream in = null; BufferedOutputStream out = null; try { ByteArrayOutputStream bytearray = new ByteArrayOutputStream(); in = new BufferedInputStream(new URL(url).openStream()); out = new BufferedOutputStream(bytearray, 1024); byte[] data = new byte[1024]; int x = 0; while ((x = in.read(data, 0, 1024)) >= 0) { out.write(data, 0, x); } return bytearray.toString(); } catch (Exception e) { throw new CVardbException(e); } finally { try { if (out != null) out.close(); if (in != null) in.close(); } catch (Exception e) { } } } | 18,760 |
0 | public void processDeleteHolding(Holding holdingBean, AuthSession authSession) { if (authSession == null) { return; } DatabaseAdapter dbDyn = null; PreparedStatement ps = null; try { dbDyn = DatabaseAdapter.getInstance(); if (holdingBean.getId() == null) throw new IllegalArgumentException("holdingId is null"); processDeleteRelatedCompany(dbDyn, holdingBean, authSession); String sql = "delete from WM_LIST_HOLDING " + "where ID_HOLDING=? and ID_HOLDING in "; switch(dbDyn.getFamaly()) { case DatabaseManager.MYSQL_FAMALY: String idList = authSession.getGrantedHoldingId(); sql += " (" + idList + ") "; break; default: sql += "(select z1.ID_ROAD from v$_read_list_road z1 where z1.user_login = ?)"; break; } ps = dbDyn.prepareStatement(sql); RsetTools.setLong(ps, 1, holdingBean.getId()); switch(dbDyn.getFamaly()) { case DatabaseManager.MYSQL_FAMALY: break; default: ps.setString(2, authSession.getUserLogin()); break; } int i1 = ps.executeUpdate(); if (log.isDebugEnabled()) log.debug("Count of deleted records - " + i1); dbDyn.commit(); } catch (Exception e) { try { if (dbDyn != null) dbDyn.rollback(); } catch (Exception e001) { } String es = "Error delete holding"; log.error(es, e); throw new IllegalStateException(es, e); } finally { DatabaseManager.close(dbDyn, ps); dbDyn = null; ps = null; } } | private void createWar() throws IOException, XMLStreamException { String appName = this.fileout.getName(); int i = appName.indexOf("."); if (i != -1) appName = appName.substring(0, i); ZipOutputStream zout = new ZipOutputStream(new FileOutputStream(this.fileout)); { ZipEntry entry = new ZipEntry("WEB-INF/web.xml"); zout.putNextEntry(entry); XMLOutputFactory factory = XMLOutputFactory.newInstance(); XMLStreamWriter w = factory.createXMLStreamWriter(zout, "ASCII"); w.writeStartDocument("ASCII", "1.0"); w.writeStartElement("web-app"); w.writeAttribute("xsi", XSI, "schemaLocation", "http://java.sun.com/xml/ns/javaee http://java.sun.com/xml /ns/javaee/web-app_2_5.xsd"); w.writeAttribute("version", "2.5"); w.writeAttribute("xmlns", J2EE); w.writeAttribute("xmlns:xsi", XSI); w.writeStartElement("description"); w.writeCharacters("Site maintenance for " + appName); w.writeEndElement(); w.writeStartElement("display-name"); w.writeCharacters(appName); w.writeEndElement(); w.writeStartElement("servlet"); w.writeStartElement("servlet-name"); w.writeCharacters("down"); w.writeEndElement(); w.writeStartElement("jsp-file"); w.writeCharacters("/WEB-INF/jsp/down.jsp"); w.writeEndElement(); w.writeEndElement(); w.writeStartElement("servlet-mapping"); w.writeStartElement("servlet-name"); w.writeCharacters("down"); w.writeEndElement(); w.writeStartElement("url-pattern"); w.writeCharacters("/*"); w.writeEndElement(); w.writeEndElement(); w.writeEndElement(); w.writeEndDocument(); w.flush(); zout.closeEntry(); } { ZipEntry entry = new ZipEntry("WEB-INF/jsp/down.jsp"); zout.putNextEntry(entry); PrintWriter w = new PrintWriter(zout); if (this.messageFile != null) { IOUtils.copyTo(new FileReader(this.messageFile), w); } else if (this.messageString != null) { w.print("<html><body>" + this.messageString + "</body></html>"); } else { w.print("<html><body><div style='text-align:center;font-size:500%;'>Oh No !<br/><b>" + appName + "</b><br/>is down for maintenance!</div></body></html>"); } w.flush(); zout.closeEntry(); } zout.finish(); zout.flush(); zout.close(); } | 18,761 |
0 | public void serveResource(HTTPResource resource, HttpServletRequest request, HttpServletResponse response) throws java.io.IOException { Image image = (Image) resource; log.debug("Serving: " + image); URL url = image.getResourceURL(); int idx = url.toString().lastIndexOf("."); String fn = image.getId() + url.toString().substring(idx); String cd = "filename=\"" + fn + "\""; response.setContentType(image.getContentType()); log.debug("LOADING: " + url); IOUtil.copyData(response.getOutputStream(), url.openStream()); } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 18,762 |
0 | public static void doVersionCheck(View view) { view.showWaitCursor(); try { URL url = new URL(jEdit.getProperty("version-check.url")); InputStream in = url.openStream(); BufferedReader bin = new BufferedReader(new InputStreamReader(in)); String line; String version = null; String build = null; while ((line = bin.readLine()) != null) { if (line.startsWith(".version")) version = line.substring(8).trim(); else if (line.startsWith(".build")) build = line.substring(6).trim(); } bin.close(); if (version != null && build != null) { if (jEdit.getBuild().compareTo(build) < 0) newVersionAvailable(view, version, url); else { GUIUtilities.message(view, "version-check" + ".up-to-date", new String[0]); } } } catch (IOException e) { String[] args = { jEdit.getProperty("version-check.url"), e.toString() }; GUIUtilities.error(view, "read-error", args); } view.hideWaitCursor(); } | public static float medianElement(float[] array, int size) { float[] tmpArray = new float[size]; System.arraycopy(array, 0, tmpArray, 0, size); boolean changed = true; while (changed) { changed = false; for (int i = 0; i < size - 1; i++) { if (tmpArray[i] > tmpArray[i + 1]) { changed = true; float tmp = tmpArray[i]; tmpArray[i] = tmpArray[i + 1]; tmpArray[i + 1] = tmp; } } } return tmpArray[size / 2]; } | 18,763 |
0 | public static File doRequestPost(URL url, String req, String fName, boolean override) throws ArcImsException { File f = null; URL virtualUrl = getVirtualRequestUrlFromUrlAndRequest(url, req); if ((f = getPreviousDownloadedURL(virtualUrl, override)) == null) { File tempDirectory = new File(tempDirectoryPath); if (!tempDirectory.exists()) { tempDirectory.mkdir(); } String nfName = normalizeFileName(fName); f = new File(tempDirectoryPath + "/" + nfName); f.deleteOnExit(); logger.info("downloading '" + url.toString() + "' to: " + f.getAbsolutePath()); try { HttpURLConnection conn = (HttpURLConnection) url.openConnection(); conn.setDoOutput(true); conn.setRequestMethod("POST"); conn.setRequestProperty("Content-type", "application/x-www-form-urlencoded"); conn.setRequestProperty("Content-length", "" + req.length()); OutputStreamWriter wr = new OutputStreamWriter(conn.getOutputStream()); wr.write(req); wr.flush(); DataOutputStream dos = new DataOutputStream(new BufferedOutputStream(new FileOutputStream(f))); byte[] buffer = new byte[1024 * 256]; InputStream is = conn.getInputStream(); long readed = 0; for (int i = is.read(buffer); i > 0; i = is.read(buffer)) { dos.write(buffer, 0, i); readed += i; } dos.close(); is.close(); wr.close(); addDownloadedURL(virtualUrl, f.getAbsolutePath()); } catch (ConnectException ce) { logger.error("Timed out error", ce); throw new ArcImsException("arcims_server_timeout"); } catch (FileNotFoundException fe) { logger.error("FileNotFound Error", fe); throw new ArcImsException("arcims_server_error"); } catch (IOException e) { logger.error("IO Error", e); throw new ArcImsException("arcims_server_error"); } } if (!f.exists()) { downloadedFiles.remove(virtualUrl); f = doRequestPost(url, req, fName, override); } return f; } | public void download() throws IOException { new File(file.getPath().substring(0, file.getPath().lastIndexOf(File.separator))).mkdirs(); URLConnection urlConnection = url.openConnection(); size = urlConnection.getContentLength(); BufferedOutputStream bufferedOutputStream = new BufferedOutputStream(new FileOutputStream(file)); InputStream inputStream = urlConnection.getInputStream(); byte[] buffer = new byte[1024]; int numRead; fetchedSize = 0; date = urlConnection.getLastModified(); while (!failed && (numRead = inputStream.read(buffer)) != -1) { if (failed) { throw new IOException("Download manually stopped"); } bufferedOutputStream.write(buffer, 0, numRead); fetchedSize += numRead; for (int n = 0, i = downloadListener.size(); n < i; n++) { synchronized (downloadListener.get(n)) { ((DownloadListener) downloadListener.get(n)).downloadProgress(this); } } } inputStream.close(); bufferedOutputStream.close(); if (file.toString().endsWith(".gz") || file.toString().endsWith(".gzip")) { for (int n = 0, i = downloadListener.size(); n < i; n++) { synchronized (downloadListener.get(n)) { ((DownloadListener) downloadListener.get(n)).uncompressingProgress(this); } } try { GZIPInputStream gzipInputStream = new GZIPInputStream(new FileInputStream(file)); String fileName = file.toString().substring(0, file.toString().lastIndexOf(".")); OutputStream outputStream = new FileOutputStream(fileName); byte[] unpackBuffer = new byte[1024]; int length; while ((length = gzipInputStream.read(unpackBuffer)) > 0) { outputStream.write(unpackBuffer, 0, length); } gzipInputStream.close(); outputStream.close(); file.delete(); file = new File(fileName); file.setLastModified(date); failed = false; finished = true; for (int n = 0, i = downloadListener.size(); n < i; n++) { synchronized (downloadListener.get(n)) { ((DownloadListener) downloadListener.get(n)).uncompressingFinished(this); } } for (int n = 0, i = downloadListener.size(); n < i; n++) { synchronized (downloadListener.get(n)) { ((DownloadListener) downloadListener.get(n)).downloadFinished(this); } } } catch (IOException ioException) { file.delete(); failed = true; for (int n = 0, i = downloadListener.size(); n < i; n++) { synchronized (downloadListener.get(n)) { ((DownloadListener) downloadListener.get(n)).exceptionWasThrown(this, ioException); } } } try { Runtime.getRuntime().exec("chmod 777 " + file.getCanonicalPath()); } catch (Exception exception) { } } else { failed = false; finished = true; file.setLastModified(date); for (int n = 0, i = downloadListener.size(); n < i; n++) { synchronized (downloadListener.get(n)) { ((DownloadListener) downloadListener.get(n)).downloadFinished(this); } } } } | 18,764 |
1 | private String convert(InputStream input, String encoding) throws Exception { Process p = Runtime.getRuntime().exec("tidy -q -f /dev/null -wrap 0 --output-xml yes --doctype omit --force-output true --new-empty-tags " + emptyTags + " --quote-nbsp no -utf8"); Thread t = new CopyThread(input, p.getOutputStream()); t.start(); ByteArrayOutputStream output = new ByteArrayOutputStream(); IOUtils.copy(p.getInputStream(), output); p.waitFor(); t.join(); return output.toString(); } | @Override public void run() { try { FileChannel in = new FileInputStream(inputfile).getChannel(); long pos = 0; for (int i = 1; i <= noofparts; i++) { FileChannel out = new FileOutputStream(outputfile.getAbsolutePath() + "." + "v" + i).getChannel(); status.setText("Rozdělovač: Rozděluji část " + i + ".."); in.transferTo(pos, splitsize, out); pos += splitsize; remainingsize -= splitsize; if (remainingsize < splitsize) in.transferTo(pos, remainingsize, out); pb.setValue(100 * i / noofparts); out.close(); } in.close(); if (deleteOnFinish) new File(inputfile + "").delete(); status.setText("Rozdělovač: Hotovo.."); JOptionPane.showMessageDialog(null, "Rozděleno!", "Rozdělovač", JOptionPane.INFORMATION_MESSAGE); } catch (IOException ex) { } } | 18,765 |
1 | public static void copyFile(File file, String pathExport) throws IOException { File out = new File(pathExport); FileChannel sourceChannel = new FileInputStream(file).getChannel(); FileChannel destinationChannel = new FileOutputStream(out).getChannel(); sourceChannel.transferTo(0, sourceChannel.size(), destinationChannel); sourceChannel.close(); destinationChannel.close(); } | public static FileChannel newFileChannel(File file, String rw, boolean enableException) throws IOException { if (file == null) return null; if (rw == null || rw.length() == 0) { return null; } rw = rw.toLowerCase(); if (rw.equals(MODE_READ)) { if (FileUtil.exists(file, enableException)) { FileInputStream fis = new FileInputStream(file); FileChannel ch = fis.getChannel(); setObjectMap(ch.hashCode(), fis, FIS); return ch; } } else if (rw.equals(MODE_WRITE)) { FileOutputStream fos = new FileOutputStream(file); FileChannel ch = fos.getChannel(); setObjectMap(ch.hashCode(), fos, FOS_W); return ch; } else if (rw.equals(MODE_APPEND)) { if (FileUtil.exists(file, enableException)) { RandomAccessFile raf = new RandomAccessFile(file, "rw"); FileChannel ch = raf.getChannel(); ch.position(ch.size()); setObjectMap(ch.hashCode(), raf, FOS_A); return ch; } } else if (rw.equals(MODE_READ_WRITE)) { if (FileUtil.exists(file, enableException)) { RandomAccessFile raf = new RandomAccessFile(file, rw); FileChannel ch = raf.getChannel(); setObjectMap(ch.hashCode(), raf, RAF); return ch; } } else { throw new IllegalArgumentException("Illegal read/write type : [" + rw + "]\n" + "You can use following types for: \n" + " (1) Read Only = \"r\"\n" + " (2) Write Only = \"w\"\n" + " (3) Read/Write = \"rw\"\n" + " (4) Append = \"a\""); } return null; } | 18,766 |
1 | private long config(final String options) throws SQLException { MessageDigest msgDigest = null; try { msgDigest = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e1) { e1.printStackTrace(); } msgDigest.update(options.getBytes()); final String md5sum = Concrete.md5(msgDigest.digest()); Statement stmt = connection.createStatement(); ResultSet rst = stmt.executeQuery("SELECT configId FROM configs WHERE md5='" + md5sum + "'"); final long configId; if (rst.next()) { configId = rst.getInt(1); } else { stmt.executeUpdate("INSERT INTO configs(config, md5) VALUES ('" + options + "', '" + md5sum + "')"); ResultSet aiRst = stmt.getGeneratedKeys(); if (aiRst.next()) { configId = aiRst.getInt(1); } else { throw new SQLException("Could not retrieve generated id"); } } stmt.executeUpdate("UPDATE executions SET configId=" + configId + " WHERE executionId=" + executionId); return configId; } | public void connected(String address, int port) { connected = true; try { if (localConnection) { byte key[] = { 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 }; si.setEncryptionKey(key); } else { saveData(address, port); MessageDigest mds = MessageDigest.getInstance("SHA"); mds.update(connectionPassword.getBytes("UTF-8")); si.setEncryptionKey(mds.digest()); } if (!si.login(username, password)) { si.disconnect(); connected = false; showErrorMessage(this, "Authentication Failure"); restore(); return; } SwingUtilities.invokeLater(new Runnable() { public void run() { connectionLabel.setText(""); progressLabel = new JLabel("Loading... Please wait."); progressLabel.setOpaque(true); progressLabel.setBackground(Color.white); replaceComponent(progressLabel); cancelButton.setEnabled(true); xx.remove(helpButton); } }); } catch (Exception e) { System.out.println("connected: Exception: " + e + "\r\n"); } ; } | 18,767 |
1 | public String md5(String phrase) { MessageDigest m; String coded = new String(); try { m = MessageDigest.getInstance("MD5"); m.update(phrase.getBytes(), 0, phrase.length()); coded = (new BigInteger(1, m.digest()).toString(16)).toString(); } catch (NoSuchAlgorithmException ex) { ex.printStackTrace(); } if (coded.length() < 32) { coded = "0" + coded; } return coded; } | public byte[] getHash(String plaintext) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest digest = MessageDigest.getInstance("SHA-1"); digest.reset(); digest.update(salt.getBytes("UTF-8")); return digest.digest(plaintext.getBytes("UTF-8")); } | 18,768 |
0 | public void save(String oid, String key, Serializable obj) throws PersisterException { String lock = getLock(oid); if (lock == null) { throw new PersisterException("Object does not exist: OID = " + oid); } else if (!NULL.equals(lock) && (!lock.equals(key))) { throw new PersisterException("The object is currently locked with another key: OID = " + oid + ", LOCK = " + lock + ", KEY = " + key); } Connection conn = null; PreparedStatement ps = null; try { byte[] data = serialize(obj); conn = _ds.getConnection(); conn.setAutoCommit(true); ps = conn.prepareStatement("update " + _table_name + " set " + _data_col + " = ?, " + _ts_col + " = ? where " + _oid_col + " = ?"); ps.setBinaryStream(1, new ByteArrayInputStream(data), data.length); ps.setLong(2, System.currentTimeMillis()); ps.setString(3, oid); ps.executeUpdate(); } catch (Throwable th) { if (conn != null) { try { conn.rollback(); } catch (Throwable th2) { } } throw new PersisterException("Failed to save object: OID = " + oid, th); } finally { if (ps != null) { try { ps.close(); } catch (Throwable th) { } } if (conn != null) { try { conn.close(); } catch (Throwable th) { } } } } | @Override public boolean copyFile(String srcRootPath, String srcDir, String srcFileName, String destRootPath, String destDir, String destFileName) { File srcPath = new File(srcRootPath + separator() + Database.getDomainName() + separator() + srcDir); if (!srcPath.exists()) { try { srcPath.mkdirs(); } catch (Exception e) { logger.error("Can't create directory...:" + srcPath); return false; } } File destPath = new File(destRootPath + separator() + Database.getDomainName() + separator() + destDir); if (!destPath.exists()) { try { destPath.mkdirs(); } catch (Exception e) { logger.error("Can't create directory...:" + destPath); return false; } } File from = new File(srcPath + separator() + srcFileName); File to = new File(destPath + separator() + destFileName); boolean res = true; FileChannel srcChannel = null; FileChannel destChannel = null; try { srcChannel = new FileInputStream(from).getChannel(); destChannel = new FileOutputStream(to).getChannel(); destChannel.transferFrom(srcChannel, 0, srcChannel.size()); } catch (Exception ex) { logger.error("Exception", ex); res = false; } finally { if (destChannel != null) { try { destChannel.close(); } catch (IOException ex) { logger.error("Exception", ex); res = false; } } if (srcChannel != null) { try { srcChannel.close(); } catch (IOException ex) { logger.error("Exception", ex); res = false; } } } return res; } | 18,769 |
0 | public void readBooklist(String filename) { Reader input = null; try { if (filename.startsWith("http:")) { URL url = new URL(filename); URLConnection conn = url.openConnection(); input = new InputStreamReader(conn.getInputStream()); } else { String fileNameAll = filename; try { fileNameAll = new File(filename).getCanonicalPath(); } catch (IOException e) { fileNameAll = new File(filename).getAbsolutePath(); } input = new FileReader(new File(fileNameAll)); } BufferedReader reader = new BufferedReader(input); String line; Date today = new Date(); while ((line = reader.readLine()) != null) { if (shuttingDown) break; String fields[] = line.split("\\|"); Map<String, String> valuesToAdd = new LinkedHashMap<String, String>(); valuesToAdd.put("fund_code_facet", fields[11]); valuesToAdd.put("date_received_facet", fields[0]); DateFormat format = new SimpleDateFormat("yyyyMMdd"); Date dateReceived = format.parse(fields[0], new ParsePosition(0)); if (dateReceived.after(today)) continue; String docID = "u" + fields[9]; try { Map<String, Object> docMap = getDocumentMap(docID); if (docMap != null) { addNewDataToRecord(docMap, valuesToAdd); documentCache.put(docID, docMap); if (doUpdate && docMap != null && docMap.size() != 0) { update(docMap); } } } catch (SolrMarcIndexerException e) { if (e.getLevel() == SolrMarcIndexerException.IGNORE) { logger.error("Indexing routine says record " + docID + " should be ignored"); } else if (e.getLevel() == SolrMarcIndexerException.DELETE) { logger.error("Indexing routine says record " + docID + " should be deleted"); } if (e.getLevel() == SolrMarcIndexerException.EXIT) { logger.error("Indexing routine says processing should be terminated by record " + docID); break; } } } } catch (FileNotFoundException e) { logger.info(e.getMessage()); logger.error(e.getCause()); } catch (IOException e) { logger.info(e.getMessage()); logger.error(e.getCause()); } } | private static void main(String[] args) { try { File f = new File("test.txt"); if (f.exists()) { throw new IOException(f + " already exists. I don't want to overwrite it."); } StraightStreamReader in; char[] cbuf = new char[0x1000]; int read; int totRead; FileOutputStream out = new FileOutputStream(f); for (int i = 0x00; i < 0x100; i++) { out.write(i); } out.close(); in = new StraightStreamReader(new FileInputStream(f)); for (int i = 0x00; i < 0x100; i++) { read = in.read(); if (read != i) { System.err.println("Error: " + i + " read as " + read); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = in.read(cbuf); if (totRead != 0x100) { System.err.println("Simple buffered read did not read the full amount: 0x" + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 7)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); f.delete(); } catch (IOException x) { System.err.println(x.getMessage()); } } | 18,770 |
0 | public void openAndClose(ZKEntry zke, LinkedList toOpen, LinkedList toRemove) throws SQLException { conn.setAutoCommit(false); try { Statement stm = conn.createStatement(); ResultSet rset = stm.executeQuery("SELECT now();"); rset.next(); Timestamp now = rset.getTimestamp("now()"); for (int i = 0; i < toRemove.size(); i++) { Workitem wi = (Workitem) toRemove.get(i); rset = stm.executeQuery("SELECT intime, part FROM stampzk WHERE stampzkid = '" + wi.getStampZkId() + "';"); rset.next(); long diff = now.getTime() - rset.getLong("intime"); float diffp = diff * rset.getFloat("part"); stm.executeUpdate("UPDATE stampzk SET outtime='" + now.getTime() + "', diff='" + diff + "', diffp='" + diffp + "' WHERE stampzkid='" + wi.getStampZkId() + "';"); } rset = stm.executeQuery("SELECT COUNT(*) FROM stampzk WHERE personalid='" + zke.getWorker().getPersonalId() + "' AND outtime='0';"); rset.next(); int count = rset.getInt("COUNT(*)") + toOpen.size(); rset = stm.executeQuery("SELECT * FROM stampzk WHERE personalid='" + zke.getWorker().getPersonalId() + "' AND outtime='0';"); while (rset.next()) { long diff = now.getTime() - rset.getLong("intime"); float diffp = diff * rset.getFloat("part"); int firstId = rset.getInt("firstid"); if (firstId == 0) firstId = rset.getInt("stampzkid"); Statement ust = conn.createStatement(); ust.executeUpdate("UPDATE stampzk SET outtime='" + now.getTime() + "', diff='" + diff + "', diffp='" + diffp + "' WHERE stampzkid='" + rset.getInt("stampzkid") + "';"); ust.executeUpdate("INSERT INTO stampzk SET zeitkid='" + rset.getInt("zeitkid") + "', personalid='" + zke.getWorker().getPersonalId() + "', funcsid='" + rset.getInt("funcsid") + "', part='" + (float) 1f / count + "', intime='" + now.getTime() + "', firstid='" + firstId + "';"); } for (int i = 0; i < toOpen.size(); i++) { stm.executeUpdate("INSERT INTO stampzk SET zeitkid='" + zke.getZeitKId() + "', personalid='" + zke.getWorker().getPersonalId() + "', intime='" + now.getTime() + "', funcsid='" + ((Workitem) toOpen.get(i)).getWorkType() + "', part='" + (float) 1f / count + "';"); } } catch (SQLException sqle) { conn.rollback(); conn.setAutoCommit(true); throw sqle; } conn.commit(); conn.setAutoCommit(true); } | public Sequence eval(Sequence[] args, Sequence contextSequence) throws XPathException { GrammarPool grammarpool = (GrammarPool) config.getProperty(XMLReaderObjectFactory.GRAMMER_POOL); if (isCalledAs("clear-grammar-cache")) { Sequence result = new ValueSequence(); int before = countTotalNumberOfGrammar(grammarpool); LOG.debug("Clearing " + before + " grammars"); clearGrammarPool(grammarpool); int after = countTotalNumberOfGrammar(grammarpool); LOG.debug("Remained " + after + " grammars"); int delta = before - after; result.add(new IntegerValue(delta)); return result; } else if (isCalledAs("show-grammar-cache")) { MemTreeBuilder builder = context.getDocumentBuilder(); NodeImpl result = writeReport(grammarpool, builder); return result; } else if (isCalledAs("pre-parse-grammar")) { if (args[0].isEmpty()) return Sequence.EMPTY_SEQUENCE; XMLGrammarPreparser parser = new XMLGrammarPreparser(); parser.registerPreparser(TYPE_XSD, null); List<Grammar> allGrammars = new ArrayList<Grammar>(); for (SequenceIterator i = args[0].iterate(); i.hasNext(); ) { String url = i.nextItem().getStringValue(); if (url.startsWith("/")) { url = "xmldb:exist://" + url; } LOG.debug("Parsing " + url); try { if (url.endsWith(".xsd")) { InputStream is = new URL(url).openStream(); XMLInputSource xis = new XMLInputSource(null, url, url, is, null); Grammar schema = parser.preparseGrammar(TYPE_XSD, xis); is.close(); allGrammars.add(schema); } else { throw new XPathException(this, "Only XMLSchemas can be preparsed."); } } catch (IOException ex) { LOG.debug(ex); throw new XPathException(this, ex); } catch (Exception ex) { LOG.debug(ex); throw new XPathException(this, ex); } } LOG.debug("Successfully parsed " + allGrammars.size() + " grammars."); Grammar grammars[] = new Grammar[allGrammars.size()]; grammars = allGrammars.toArray(grammars); grammarpool.cacheGrammars(TYPE_XSD, grammars); ValueSequence result = new ValueSequence(); for (Grammar one : grammars) { result.add(new StringValue(one.getGrammarDescription().getNamespace())); } return result; } else { LOG.error("function not found error"); throw new XPathException(this, "function not found"); } } | 18,771 |
0 | public static void main(String[] args) { Usage u = new ccngetmeta(); for (int i = 0; i < args.length - 3; i++) { if (!CommonArguments.parseArguments(args, i, u)) { u.usage(); System.exit(1); } if (CommonParameters.startArg > i + 1) i = CommonParameters.startArg - 1; } if (args.length != CommonParameters.startArg + 3) { u.usage(); System.exit(1); } try { int readsize = 1024; CCNHandle handle = CCNHandle.open(); String metaArg = args[CommonParameters.startArg + 1]; if (!metaArg.startsWith("/")) metaArg = "/" + metaArg; ContentName fileName = MetadataProfile.getLatestVersion(ContentName.fromURI(args[CommonParameters.startArg]), ContentName.fromNative(metaArg), CommonParameters.timeout, handle); if (fileName == null) { System.out.println("File " + args[CommonParameters.startArg] + " does not exist"); System.exit(1); } if (VersioningProfile.hasTerminalVersion(fileName)) { } else { System.out.println("File " + fileName + " does not exist... exiting"); System.exit(1); } File theFile = new File(args[CommonParameters.startArg + 2]); if (theFile.exists()) { System.out.println("Overwriting file: " + args[CommonParameters.startArg + 1]); } FileOutputStream output = new FileOutputStream(theFile); long starttime = System.currentTimeMillis(); CCNInputStream input; if (CommonParameters.unversioned) input = new CCNInputStream(fileName, handle); else input = new CCNFileInputStream(fileName, handle); if (CommonParameters.timeout != null) { input.setTimeout(CommonParameters.timeout); } byte[] buffer = new byte[readsize]; int readcount = 0; long readtotal = 0; while ((readcount = input.read(buffer)) != -1) { readtotal += readcount; output.write(buffer, 0, readcount); output.flush(); } if (CommonParameters.verbose) System.out.println("ccngetfile took: " + (System.currentTimeMillis() - starttime) + "ms"); System.out.println("Retrieved content " + args[CommonParameters.startArg + 1] + " got " + readtotal + " bytes."); System.exit(0); } catch (ConfigurationException e) { System.out.println("Configuration exception in ccngetfile: " + e.getMessage()); e.printStackTrace(); } catch (MalformedContentNameStringException e) { System.out.println("Malformed name: " + args[CommonParameters.startArg] + " " + e.getMessage()); e.printStackTrace(); } catch (IOException e) { System.out.println("Cannot write file or read content. " + e.getMessage()); e.printStackTrace(); } System.exit(1); } | public Properties load() { Properties lvProperties = new Properties(); try { InputStream lvInputStream = url.openStream(); lvProperties.load(lvInputStream); } catch (Exception e) { throw new PropertiesLoadException("Error in load-method:", e); } return lvProperties; } | 18,772 |
0 | public void parseFile(String filespec, URL documentBase) { DataInputStream in = null; if (filespec == null || filespec.length() == 0) { in = new DataInputStream(System.in); } else { try { URL url = null; if (documentBase == null && _documentBase != null) { documentBase = _documentBase; } if (documentBase == null) { url = new URL(filespec); } else { try { url = new URL(documentBase, filespec); } catch (NullPointerException e) { url = new URL(filespec); } } in = new DataInputStream(url.openStream()); } catch (MalformedURLException e) { try { in = new DataInputStream(new FileInputStream(filespec)); } catch (FileNotFoundException me) { _errorMsg = new String[2]; _errorMsg[0] = "File not found: " + filespec; _errorMsg[1] = me.getMessage(); return; } catch (SecurityException me) { _errorMsg = new String[2]; _errorMsg[0] = "Security Exception: " + filespec; _errorMsg[1] = me.getMessage(); return; } } catch (IOException ioe) { _errorMsg = new String[3]; _errorMsg[0] = "Failure opening URL: "; _errorMsg[1] = " " + filespec; _errorMsg[2] = ioe.getMessage(); return; } } try { BufferedReader din = new BufferedReader(new InputStreamReader(in)); String line = din.readLine(); while (line != null) { _parseLine(line); line = din.readLine(); } } catch (MalformedURLException e) { _errorMsg = new String[2]; _errorMsg[0] = "Malformed URL: " + filespec; _errorMsg[1] = e.getMessage(); return; } catch (IOException e) { _errorMsg = new String[2]; _errorMsg[0] = "Failure reading data: " + filespec; _errorMsg[1] = e.getMessage(); _errorMsg[1] = e.getMessage(); } finally { try { in.close(); } catch (IOException me) { } } } | public static void copyFile(File src, File dst) throws IOException { FileInputStream fis = null; FileOutputStream fos = null; fis = new FileInputStream(src); fos = new FileOutputStream(dst); byte[] buffer = new byte[16384]; int read = 0; while ((read = fis.read(buffer)) != -1) { fos.write(buffer, 0, read); } fis.close(); fos.flush(); fos.close(); } | 18,773 |
0 | @Override protected IProject createProject(String projectName, IProgressMonitor monitor) throws CoreException { monitor.beginTask(CheatSheetsPlugin.INSTANCE.getString("_UI_CreateJavaProject_message", new String[] { projectName }), 5); IProject project = super.createProject(projectName, new SubProgressMonitor(monitor, 1)); if (project != null) { IProjectDescription description = project.getDescription(); if (!description.hasNature(JavaCore.NATURE_ID)) { IJavaProject javaProject = JavaCore.create(project); if (javaProject != null) { String[] natures = description.getNatureIds(); String[] javaNatures = new String[natures.length + 1]; System.arraycopy(natures, 0, javaNatures, 0, natures.length); javaNatures[natures.length] = JavaCore.NATURE_ID; description.setNatureIds(javaNatures); project.setDescription(description, new SubProgressMonitor(monitor, 1)); IFolder sourceFolder = project.getFolder(SOURCE_FOLDER); if (!sourceFolder.exists()) { sourceFolder.create(true, true, new SubProgressMonitor(monitor, 1)); } javaProject.setOutputLocation(project.getFolder(OUTPUT_FOLDER).getFullPath(), new SubProgressMonitor(monitor, 1)); IClasspathEntry[] entries = new IClasspathEntry[] { JavaCore.newSourceEntry(sourceFolder.getFullPath()), JavaCore.newContainerEntry(new Path("org.eclipse.jdt.launching.JRE_CONTAINER")) }; javaProject.setRawClasspath(entries, new SubProgressMonitor(monitor, 1)); } } } monitor.done(); return project; } | public void testSimpleHttpPostsHTTP10() throws Exception { int reqNo = 20; Random rnd = new Random(); List testData = new ArrayList(reqNo); for (int i = 0; i < reqNo; i++) { int size = rnd.nextInt(5000); byte[] data = new byte[size]; rnd.nextBytes(data); testData.add(data); } this.server.registerHandler("*", new HttpRequestHandler() { public void handle(final HttpRequest request, final HttpResponse response, final HttpContext context) throws HttpException, IOException { if (request instanceof HttpEntityEnclosingRequest) { HttpEntity incoming = ((HttpEntityEnclosingRequest) request).getEntity(); byte[] data = EntityUtils.toByteArray(incoming); ByteArrayEntity outgoing = new ByteArrayEntity(data); outgoing.setChunked(false); response.setEntity(outgoing); } else { StringEntity outgoing = new StringEntity("No content"); response.setEntity(outgoing); } } }); this.server.start(); this.client.getParams().setParameter(CoreProtocolPNames.PROTOCOL_VERSION, HttpVersion.HTTP_1_0); DefaultHttpClientConnection conn = new DefaultHttpClientConnection(); HttpHost host = new HttpHost("localhost", this.server.getPort()); try { for (int r = 0; r < reqNo; r++) { if (!conn.isOpen()) { Socket socket = new Socket(host.getHostName(), host.getPort()); conn.bind(socket, this.client.getParams()); } BasicHttpEntityEnclosingRequest post = new BasicHttpEntityEnclosingRequest("POST", "/"); byte[] data = (byte[]) testData.get(r); ByteArrayEntity outgoing = new ByteArrayEntity(data); post.setEntity(outgoing); HttpResponse response = this.client.execute(post, host, conn); assertEquals(HttpVersion.HTTP_1_0, response.getStatusLine().getProtocolVersion()); byte[] received = EntityUtils.toByteArray(response.getEntity()); byte[] expected = (byte[]) testData.get(r); assertEquals(expected.length, received.length); for (int i = 0; i < expected.length; i++) { assertEquals(expected[i], received[i]); } if (!this.client.keepAlive(response)) { conn.close(); } } HttpConnectionMetrics cm = conn.getMetrics(); assertEquals(reqNo, cm.getRequestCount()); assertEquals(reqNo, cm.getResponseCount()); } finally { conn.close(); this.server.shutdown(); } } | 18,774 |
0 | public static String encryptMD5(String str) { try { MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(str.getBytes()); byte[] hash = md5.digest(); md5.reset(); return Format.hashToHex(hash); } catch (java.security.NoSuchAlgorithmException nsae0) { return null; } } | public Object downloadFile(File destinationFile, URL[] urls, DownloadListener listener, Object checksum, long length, PRIORITY priority) throws DownloadException { URL url = urls[0]; if (!url.getProtocol().equalsIgnoreCase("http")) { throw new DownloadException(" Only HTTP is supported in this version "); } if (!destinationFile.exists()) { try { destinationFile.createNewFile(); } catch (IOException e) { e.printStackTrace(); throw new DownloadException("Unable to download from URL : " + url.toString()); } } HeadMethod head = new HeadMethod(url.toString()); HttpClient httpClient = new HttpClient(); try { httpClient.executeMethod(head); Header[] headers = head.getResponseHeaders(); for (Header header : headers) { System.out.println(header); } Header header = head.getResponseHeader("Content-Length"); Object contentLength = header.getValue(); Long fileLength = Long.parseLong(contentLength.toString()); System.out.println(length + " : " + fileLength); GetMethod get = new GetMethod(url.toString()); httpClient.executeMethod(get); InputStream ins = get.getResponseBodyAsStream(); FileOutputStream fos = new FileOutputStream(destinationFile); IOUtils.copy(ins, fos); System.out.println(" DOWNLOADED FILE"); } catch (HttpException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } return null; } | 18,775 |
0 | public static boolean writeFile(HttpServletResponse resp, File reqFile) { boolean retVal = false; InputStream in = null; try { in = new BufferedInputStream(new FileInputStream(reqFile)); IOUtils.copy(in, resp.getOutputStream()); logger.debug("File successful written to servlet response: " + reqFile.getAbsolutePath()); } catch (FileNotFoundException e) { logger.error("Resource not found: " + reqFile.getAbsolutePath()); } catch (IOException e) { logger.error(String.format("Error while rendering [%s]: %s", reqFile.getAbsolutePath(), e.getMessage()), e); } finally { IOUtils.closeQuietly(in); } return retVal; } | protected byte[] getBytesForWebPageUsingHTTPClient(String urlString) throws ClientProtocolException, IOException { log("Retrieving url: " + urlString); DefaultHttpClient httpclient = new DefaultHttpClient(); if (this.archiveAccessSpecification.getUserID() != null) { httpclient.getCredentialsProvider().setCredentials(new AuthScope(AuthScope.ANY), new UsernamePasswordCredentials(this.archiveAccessSpecification.getUserID(), this.archiveAccessSpecification.getUserPassword())); } HttpGet httpget = new HttpGet(urlString); log("about to do request: " + httpget.getRequestLine()); HttpResponse response = httpclient.execute(httpget); HttpEntity entity = response.getEntity(); log("-------------- Request results --------------"); log("Status line: " + response.getStatusLine()); if (entity != null) { log("Response content length: " + entity.getContentLength()); } log("contents"); byte[] bytes = null; if (entity != null) { bytes = getBytesFromInputStream(entity.getContent()); entity.consumeContent(); } log("Status code :" + response.getStatusLine().getStatusCode()); log(response.getStatusLine().getReasonPhrase()); if (response.getStatusLine().getStatusCode() != 200) return null; return bytes; } | 18,776 |
0 | protected static Certificate[] getCurrentCertificates() throws Exception { Certificate[] certificate = AppletLoader.class.getProtectionDomain().getCodeSource().getCertificates(); if (certificate == null) { URL location = AppletLoader.class.getProtectionDomain().getCodeSource().getLocation(); JarURLConnection jurl = (JarURLConnection) (new URL("jar:" + location.toString() + "!/org/lwjgl/util/applet/AppletLoader.class").openConnection()); jurl.setDefaultUseCaches(true); certificate = jurl.getCertificates(); } return certificate; } | public void testStorageByteArray() throws Exception { TranslationResponseInMemory r = new TranslationResponseInMemory(2048, "UTF-8"); { OutputStream output = r.getOutputStream(); output.write("This is an example".getBytes("UTF-8")); output.write(" and another one.".getBytes("UTF-8")); assertEquals("This is an example and another one.", r.getText()); } { InputStream input = r.getInputStream(); StringWriter writer = new StringWriter(); try { IOUtils.copy(input, writer, "UTF-8"); } finally { input.close(); writer.close(); } assertEquals("This is an example and another one.", writer.toString()); } { OutputStream output = r.getOutputStream(); output.write(" and another line".getBytes("UTF-8")); assertEquals("This is an example and another one. and another line", r.getText()); } { Writer output = r.getWriter(); output.write(" and write some more"); assertEquals("This is an example and another one. and another line and write some more", r.getText()); } { r.addText(" and even more."); assertEquals("This is an example and another one. and another line and write some more and even more.", r.getText()); } assertFalse(r.hasEnded()); r.setEndState(ResponseStateOk.getInstance()); assertTrue(r.hasEnded()); try { r.getOutputStream(); fail("Previous line should throw IOException as result closed."); } catch (IOException e) { } try { r.getWriter(); fail("Previous line should throw IOException as result closed."); } catch (IOException e) { } } | 18,777 |
0 | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | public int next() { int sequenceValue = current(); try { Update update = dbi.getUpdate(); update.setTableName(sequenceTable); update.assignValue("SEQUENCE_VALUE", --sequenceValue); Search search = new Search(); search.addAttributeCriteria(sequenceTable, "SEQUENCE_NAME", Search.EQUAL, sequenceName); update.where(search); int affectedRows = dbi.getConnection().createStatement().executeUpdate(update.toString()); if (affectedRows == 1) { dbi.getConnection().commit(); } else { dbi.getConnection().rollback(); } } catch (SQLException sqle) { System.err.println("SQLException occurred in current(): " + sqle.getMessage()); } return sequenceValue; } | 18,778 |
0 | private void login() throws LoginException { log.info("# iモード.netにログイン"); try { this.httpClient.getCookieStore().clear(); HttpPost post = new HttpPost(LoginUrl); List<NameValuePair> formparams = new ArrayList<NameValuePair>(); formparams.add(new BasicNameValuePair("HIDEURL", "?WM_AK=https%3a%2f%2fimode.net%2fag&path=%2fimail%2ftop&query=")); formparams.add(new BasicNameValuePair("LOGIN", "WM_LOGIN")); formparams.add(new BasicNameValuePair("WM_KEY", "0")); formparams.add(new BasicNameValuePair("MDCM_UID", this.name)); formparams.add(new BasicNameValuePair("MDCM_PWD", this.pass)); UrlEncodedFormEntity entity = null; try { entity = new UrlEncodedFormEntity(formparams, "UTF-8"); } catch (Exception e) { } post.setHeader("User-Agent", "Mozilla/4.0 (compatible;MSIE 7.0; Windows NT 6.0;)"); post.setEntity(entity); try { HttpResponse res = this.executeHttp(post); if (res == null) { this.logined = Boolean.FALSE; throw new IOException("Redirect Error"); } if (res.getStatusLine().getStatusCode() != 200) { this.logined = Boolean.FALSE; throw new IOException("http login response bad status code " + res.getStatusLine().getStatusCode()); } String body = toStringBody(res); if (body.indexOf("<title>認証エラー") > 0) { this.logined = Boolean.FALSE; log.info("認証エラー"); log.debug(body); this.clearCookie(); throw new LoginException("認証エラー"); } } finally { post.abort(); } post = new HttpPost(JsonUrl + "login"); try { HttpResponse res = this.requestPost(post, null); if (res == null) { this.logined = Boolean.FALSE; throw new IOException("Login Error"); } if (res.getStatusLine().getStatusCode() != 200) { this.logined = Boolean.FALSE; throw new IOException("http login2 response bad status code " + res.getStatusLine().getStatusCode()); } this.logined = Boolean.TRUE; } finally { post.abort(); } } catch (Exception e) { this.logined = Boolean.FALSE; throw new LoginException("Docomo i mode.net Login Error.", e); } } | static void copy(String src, String dest) throws IOException { File ifp = new File(src); File ofp = new File(dest); if (ifp.exists() == false) { throw new IOException("file '" + src + "' does not exist"); } FileInputStream fis = new FileInputStream(ifp); FileOutputStream fos = new FileOutputStream(ofp); byte[] b = new byte[1024]; while (fis.read(b) > 0) fos.write(b); fis.close(); fos.close(); } | 18,779 |
1 | private void fileMaker() { try { long allData = 0; double a = 10; int range = 0; int blockLength = 0; File newFile = new File(mfr.getFilename() + ".part"); if (newFile.exists()) { newFile.delete(); } ArrayList<DataRange> rangeList = null; byte[] data = null; newFile.createNewFile(); ByteBuffer buffer = ByteBuffer.allocate(mfr.getBlocksize()); FileChannel rChannel = new FileInputStream(inputFileName).getChannel(); FileChannel wChannel = new FileOutputStream(newFile, true).getChannel(); System.out.println(); System.out.print("File completion: "); System.out.print("|----------|"); openConnection(); http.getResponseHeader(); for (int i = 0; i < fileMap.length; i++) { fileOffset = fileMap[i]; if (fileOffset != -1) { rChannel.read(buffer, fileOffset); buffer.flip(); wChannel.write(buffer); buffer.clear(); } else { if (!rangeQueue) { rangeList = rangeLookUp(i); range = rangeList.size(); openConnection(); http.setRangesRequest(rangeList); http.sendRequest(); http.getResponseHeader(); data = http.getResponseBody(mfr.getBlocksize()); allData += http.getAllTransferedDataLength(); } if ((i * mfr.getBlocksize() + mfr.getBlocksize()) < mfr.getLength()) { blockLength = mfr.getBlocksize(); } else { blockLength = (int) ((int) (mfr.getBlocksize()) + (mfr.getLength() - (i * mfr.getBlocksize() + mfr.getBlocksize()))); } buffer.put(data, (range - rangeList.size()) * mfr.getBlocksize(), blockLength); buffer.flip(); wChannel.write(buffer); buffer.clear(); rangeList.remove(0); if (rangeList.isEmpty()) { rangeQueue = false; } } if ((((double) i / ((double) fileMap.length - 1)) * 100) >= a) { progressBar(((double) i / ((double) fileMap.length - 1)) * 100); a += 10; } } newFile.setLastModified(getMTime()); sha = new SHA1(newFile); if (sha.SHA1sum().equals(mfr.getSha1())) { System.out.println("\nverifying download...checksum matches OK"); System.out.println("used " + (mfr.getLength() - (mfr.getBlocksize() * missing)) + " " + "local, fetched " + (mfr.getBlocksize() * missing)); new File(mfr.getFilename()).renameTo(new File(mfr.getFilename() + ".zs-old")); newFile.renameTo(new File(mfr.getFilename())); allData += mfr.getLengthOfMetafile(); System.out.println("really downloaded " + allData); double overhead = ((double) (allData - (mfr.getBlocksize() * missing)) / ((double) (mfr.getBlocksize() * missing))) * 100; System.out.println("overhead: " + df.format(overhead) + "%"); } else { System.out.println("\nverifying download...checksum don't match"); System.out.println("Deleting temporary file"); newFile.delete(); System.exit(1); } } catch (IOException ex) { System.out.println("Can't read or write, check your permissions."); System.exit(1); } } | private static void copy(String fromFileName, String toFileName) throws IOException { File fromFile = new File(fromFileName); File toFile = new File(toFileName); if (!fromFile.exists()) throw new IOException("FileCopy: " + "no such source file: " + fromFileName); if (!fromFile.isFile()) throw new IOException("FileCopy: " + "can't copy directory: " + fromFileName); if (!fromFile.canRead()) throw new IOException("FileCopy: " + "source file is unreadable: " + fromFileName); if (toFile.isDirectory()) toFile = new File(toFile, fromFile.getName()); if (toFile.exists()) { if (!toFile.canWrite()) throw new IOException("FileCopy: destination file is unwriteable: " + toFileName); System.out.flush(); BufferedReader in = new BufferedReader(new InputStreamReader(System.in)); String response = in.readLine(); if (!response.equals("Y") && !response.equals("y")) throw new IOException("FileCopy: existing file was not overwritten."); } else { String parent = toFile.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) throw new IOException("FileCopy: " + "destination directory doesn't exist: " + parent); if (dir.isFile()) throw new IOException("FileCopy: " + "destination is not a directory: " + parent); if (!dir.canWrite()) throw new IOException("FileCopy: " + "destination directory is unwriteable: " + parent); } FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(fromFile); to = new FileOutputStream(toFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead); } finally { if (from != null) try { from.close(); } catch (IOException e) { ; } if (to != null) try { to.close(); } catch (IOException e) { ; } } } | 18,780 |
1 | @SuppressWarnings("unchecked") protected void displayFreeMarkerResponse(HttpServletRequest request, HttpServletResponse response, String templateName, Map<String, Object> variableMap) throws IOException { Enumeration<String> attrNameEnum = request.getSession().getAttributeNames(); String attrName; while (attrNameEnum.hasMoreElements()) { attrName = attrNameEnum.nextElement(); if (attrName != null && attrName.startsWith(ADMIN4J_SESSION_VARIABLE_PREFIX)) { variableMap.put("Session" + attrName, request.getSession().getAttribute(attrName)); } } variableMap.put("RequestAdmin4jCurrentUri", request.getRequestURI()); Template temp = FreemarkerUtils.createConfiguredTemplate(this.getClass(), templateName); ByteArrayOutputStream outStream = new ByteArrayOutputStream(); try { temp.process(variableMap, new OutputStreamWriter(outStream)); response.setContentLength(outStream.size()); IOUtils.copy(new ByteArrayInputStream(outStream.toByteArray()), response.getOutputStream()); response.getOutputStream().flush(); response.getOutputStream().close(); } catch (Exception e) { throw new Admin4jRuntimeException(e); } } | private static void createNonCompoundData(String dir, String type) { try { Set s = new HashSet(); File nouns = new File(dir + "index." + type); FileInputStream fis = new FileInputStream(nouns); InputStreamReader reader = new InputStreamReader(fis); StringBuffer sb = new StringBuffer(); int chr = reader.read(); while (chr >= 0) { if (chr == '\n' || chr == '\r') { String line = sb.toString(); if (line.length() > 0) { if (line.charAt(0) != ' ') { String[] spaceSplit = PerlHelp.split(line); if (spaceSplit[0].indexOf('_') < 0) { s.add(spaceSplit[0]); } } } sb.setLength(0); } else { sb.append((char) chr); } chr = reader.read(); } System.out.println(type + " size=" + s.size()); File output = new File(dir + "nonCompound." + type + "s.gz"); FileOutputStream fos = new FileOutputStream(output); GZIPOutputStream gzos = new GZIPOutputStream(new BufferedOutputStream(fos)); PrintWriter writer = new PrintWriter(gzos); writer.println("# This file was extracted from WordNet data, the following copyright notice"); writer.println("# from WordNet is attached."); writer.println("#"); writer.println("# This software and database is being provided to you, the LICENSEE, by "); writer.println("# Princeton University under the following license. By obtaining, using "); writer.println("# and/or copying this software and database, you agree that you have "); writer.println("# read, understood, and will comply with these terms and conditions.: "); writer.println("# "); writer.println("# Permission to use, copy, modify and distribute this software and "); writer.println("# database and its documentation for any purpose and without fee or "); writer.println("# royalty is hereby granted, provided that you agree to comply with "); writer.println("# the following copyright notice and statements, including the disclaimer, "); writer.println("# and that the same appear on ALL copies of the software, database and "); writer.println("# documentation, including modifications that you make for internal "); writer.println("# use or for distribution. "); writer.println("# "); writer.println("# WordNet 1.7 Copyright 2001 by Princeton University. All rights reserved. "); writer.println("# "); writer.println("# THIS SOFTWARE AND DATABASE IS PROVIDED \"AS IS\" AND PRINCETON "); writer.println("# UNIVERSITY MAKES NO REPRESENTATIONS OR WARRANTIES, EXPRESS OR "); writer.println("# IMPLIED. BY WAY OF EXAMPLE, BUT NOT LIMITATION, PRINCETON "); writer.println("# UNIVERSITY MAKES NO REPRESENTATIONS OR WARRANTIES OF MERCHANT- "); writer.println("# ABILITY OR FITNESS FOR ANY PARTICULAR PURPOSE OR THAT THE USE "); writer.println("# OF THE LICENSED SOFTWARE, DATABASE OR DOCUMENTATION WILL NOT "); writer.println("# INFRINGE ANY THIRD PARTY PATENTS, COPYRIGHTS, TRADEMARKS OR "); writer.println("# OTHER RIGHTS. "); writer.println("# "); writer.println("# The name of Princeton University or Princeton may not be used in"); writer.println("# advertising or publicity pertaining to distribution of the software"); writer.println("# and/or database. Title to copyright in this software, database and"); writer.println("# any associated documentation shall at all times remain with"); writer.println("# Princeton University and LICENSEE agrees to preserve same. "); for (Iterator i = s.iterator(); i.hasNext(); ) { String mwe = (String) i.next(); writer.println(mwe); } writer.close(); } catch (Exception e) { e.printStackTrace(); } } | 18,781 |
0 | public void modify(ModifyInterceptorChain chain, DistinguishedName dn, ArrayList<LDAPModification> mods, LDAPConstraints constraints) throws LDAPException { Connection con = (Connection) chain.getRequest().get(JdbcInsert.MYVD_DB_CON + "LDAPBaseServer"); if (con == null) { throw new LDAPException("Operations Error", LDAPException.OPERATIONS_ERROR, "No Database Connection"); } try { con.setAutoCommit(false); HashMap<String, String> db2ldap = (HashMap<String, String>) chain.getRequest().get(JdbcInsert.MYVD_DB_DB2LDAP + "LDAPBaseServer"); Iterator<LDAPModification> it = mods.iterator(); String uid = ((RDN) dn.getDN().getRDNs().get(0)).getValue(); int id = this.getId(dn, con); while (it.hasNext()) { LDAPModification mod = it.next(); if (mod.getOp() == LDAPModification.REPLACE) { String attributeName = mod.getAttribute().getName(); if (attributeName.equals(db2ldap.get("first")) || attributeName.equals(db2ldap.get("last"))) { PreparedStatement ps = con.prepareStatement("UPDATE USERS SET " + (attributeName.equals(db2ldap.get("first")) ? "first" : "last") + "=? WHERE username=?"); ps.setString(1, mod.getAttribute().getStringValue()); ps.setString(2, uid); ps.executeUpdate(); ps.close(); } else if (attributeName.equals(db2ldap.get("username"))) { throw new LDAPException("Can not modify the rdn", LDAPException.NOT_ALLOWED_ON_RDN, "Can not perform modify"); } else if (attributeName.equals(db2ldap.get("name"))) { PreparedStatement ps = con.prepareStatement("DELETE FROM locationmap WHERE person=?"); ps.setInt(1, id); ps.executeUpdate(); ps.close(); ps = con.prepareStatement("INSERT INTO locationmap (person,location) VALUES (?,?)"); PreparedStatement pssel = con.prepareStatement("SELECT id FROM LOCATIONS WHERE name=?"); String[] vals = mod.getAttribute().getStringValueArray(); for (int i = 0; i < vals.length; i++) { pssel.setString(1, vals[i]); ResultSet rs = pssel.executeQuery(); if (!rs.next()) { con.rollback(); throw new LDAPException("Location " + vals[i] + " does not exist", LDAPException.OBJECT_CLASS_VIOLATION, "Location " + vals[i] + " does not exist"); } int lid = rs.getInt("id"); ps.setInt(1, id); ps.setInt(2, lid); ps.executeUpdate(); } ps.close(); pssel.close(); } } else if (mod.getOp() == LDAPModification.DELETE) { if (mod.getAttribute().getName().equals(db2ldap.get("name"))) { String[] vals = mod.getAttribute().getStringValueArray(); if (vals.length == 0) { PreparedStatement ps = con.prepareStatement("DELETE FROM locationmap WHERE person=?"); ps.setInt(1, id); ps.executeUpdate(); ps.close(); } else { PreparedStatement ps = con.prepareStatement("DELETE FROM locationmap WHERE person=? and location=?"); PreparedStatement pssel = con.prepareStatement("SELECT id FROM LOCATIONS WHERE name=?"); for (int i = 0; i < vals.length; i++) { pssel.setString(1, vals[i]); ResultSet rs = pssel.executeQuery(); if (!rs.next()) { con.rollback(); throw new LDAPException("Location " + vals[i] + " does not exist", LDAPException.OBJECT_CLASS_VIOLATION, "Location " + vals[i] + " does not exist"); } int lid = rs.getInt("id"); ps.setInt(1, id); ps.setInt(2, lid); ps.executeUpdate(); } ps.close(); pssel.close(); } } else { throw new LDAPException("Can not delete attribute " + mod.getAttribute().getName(), LDAPException.INVALID_ATTRIBUTE_SYNTAX, ""); } } else if (mod.getOp() == LDAPModification.ADD) { if (mod.getAttribute().getName().equals(db2ldap.get("name"))) { String[] vals = mod.getAttribute().getStringValueArray(); PreparedStatement ps = con.prepareStatement("INSERT INTO locationmap (person,location) VALUES (?,?)"); PreparedStatement pssel = con.prepareStatement("SELECT id FROM LOCATIONS WHERE name=?"); for (int i = 0; i < vals.length; i++) { pssel.setString(1, vals[i]); ResultSet rs = pssel.executeQuery(); if (!rs.next()) { con.rollback(); throw new LDAPException("Location " + vals[i] + " does not exist", LDAPException.OBJECT_CLASS_VIOLATION, "Location " + vals[i] + " does not exist"); } int lid = rs.getInt("id"); ps.setInt(1, id); ps.setInt(2, lid); ps.executeUpdate(); } ps.close(); pssel.close(); } else { throw new LDAPException("Can not delete attribute " + mod.getAttribute().getName(), LDAPException.INVALID_ATTRIBUTE_SYNTAX, ""); } } } con.commit(); } catch (SQLException e) { try { con.rollback(); } catch (SQLException e1) { throw new LDAPException("Could not delete entry or rollback transaction", LDAPException.OPERATIONS_ERROR, e.toString(), e); } throw new LDAPException("Could not delete entry", LDAPException.OPERATIONS_ERROR, e.toString(), e); } } | public byte[] getBytesMethod(String url) { logger.info("Facebook: @executing facebookGetMethod():" + url); byte[] responseBytes = null; try { HttpGet loginGet = new HttpGet(url); loginGet.addHeader("Accept-Encoding", "gzip"); HttpResponse response = httpClient.execute(loginGet); HttpEntity entity = response.getEntity(); logger.trace("Facebook: getBytesMethod: " + response.getStatusLine()); if (entity != null) { InputStream in = response.getEntity().getContent(); if (response.getEntity().getContentEncoding().getValue().equals("gzip")) { in = new GZIPInputStream(in); } ByteArrayOutputStream out = new ByteArrayOutputStream(); byte[] b = new byte[4096]; int n; while ((n = in.read(b)) != -1) { out.write(b, 0, n); } responseBytes = out.toByteArray(); in.close(); entity.consumeContent(); } int statusCode = response.getStatusLine().getStatusCode(); if (statusCode != 200) { logger.warn("Facebook: Error Occured! Status Code = " + statusCode); responseBytes = null; } logger.info("Facebook: Get Bytes Method done(" + statusCode + "), response bytes length: " + (responseBytes == null ? 0 : responseBytes.length)); } catch (IOException e) { logger.warn("Facebook: ", e); } return responseBytes; } | 18,782 |
0 | public File createReadmeFile(File dir, MavenProject mavenProject) throws IOException { InputStream is = getClass().getResourceAsStream("README.template"); StringWriter sw = new StringWriter(); IOUtils.copy(is, sw); String content = sw.getBuffer().toString(); content = StringUtils.replace(content, "{project_name}", mavenProject.getArtifactId()); File readme = new File(dir, "README.TXT"); FileUtils.writeStringToFile(readme, content); return readme; } | private void initialize() { List providers = new ArrayList(); while (this.urls.hasMoreElements()) { URL url = (URL) this.urls.nextElement(); try { BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream(), "UTF-8")); String line = null; while ((line = reader.readLine()) != null) { String provider = uncommentLine(line).trim(); if (provider != null && provider.length() > 0) { providers.add(provider); } } } catch (UnsupportedEncodingException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } } this.iterator = providers.iterator(); } | 18,783 |
0 | @Override public T[] sort(T[] values) { super.compareTimes = 0; for (int i = 0; i < values.length; i++) { for (int j = 0; j < values.length - i - 1; j++) { super.compareTimes++; if (values[j].compareTo(values[j + 1]) > 0) { T temp = values[j]; values[j] = values[j + 1]; values[j + 1] = temp; } } } return values; } | public void run() { Thread.currentThread().setName("zhongwen.com watcher"); String url = getURL(); try { while (m_shouldBeRunning) { try { BufferedReader reader = new BufferedReader(new InputStreamReader(new URL(url).openStream(), "ISO8859_1")); String line; Vector chatLines = new Vector(); boolean startGrabbing = false; while ((line = reader.readLine()) != null) { if (line.indexOf("</style>") >= 0) { startGrabbing = true; } else if (startGrabbing) { if (line.equals(m_mostRecentKnownLine)) { break; } chatLines.addElement(line); } } reader.close(); for (int i = chatLines.size() - 1; i >= 0; --i) { String chatLine = (String) chatLines.elementAt(i); m_mostRecentKnownLine = chatLine; if (chatLine.indexOf(":") >= 0) { String from = chatLine.substring(0, chatLine.indexOf(":")); String message = stripTags(chatLine.substring(chatLine.indexOf(":"))); m_source.pushMessage(new ZhongWenMessage(m_source, from, message)); } else { m_source.pushMessage(new ZhongWenMessage(m_source, null, stripTags(chatLine))); } } Thread.sleep(SLEEP_TIME); } catch (InterruptedIOException e) { } catch (InterruptedException e) { } } } catch (UnsupportedEncodingException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } catch (RuntimeException e) { m_source.disconnect(); throw e; } catch (Error e) { m_source.disconnect(); throw e; } } | 18,784 |
0 | @Override protected URLConnection openConnection(URL url) throws IOException { final String urlPath = url.getPath(); final int status; final String path; String statusAsString = extractValue(urlPath, STATUS_REGEX, STATUS_CAPTURE); status = statusAsString == null ? 200 : Integer.parseInt(statusAsString); path = extractPath(urlPath); if (saved.get(url.toString()) == null) { saved.put(url.toString(), new ArrayList<ByteArrayOutputStream>()); } return new HttpsURLConnection(url) { @Override public int getResponseCode() throws IOException { return status; } @Override public InputStream getInputStream() throws IOException { if (errorStatus()) throw new IOException("fake server returned a fake error"); if (path == null) { return new ByteArrayInputStream(new byte[0]); } else { return new FileInputStream(path); } } @Override public InputStream getErrorStream() { if (errorStatus()) { try { return new FileInputStream(path); } catch (FileNotFoundException e) { throw new RuntimeException(e); } } else { return null; } } @Override public OutputStream getOutputStream() throws IOException { final ByteArrayOutputStream out = new ByteArrayOutputStream(); Handler.saved.get(url.toString()).add(out); return out; } @Override public String getContentType() { return "test/plain"; } @Override public void connect() throws IOException { } @Override public boolean usingProxy() { return false; } @Override public void disconnect() { } private boolean errorStatus() { return status >= 500 && status <= 599; } @Override public String getCipherSuite() { return null; } @Override public Certificate[] getLocalCertificates() { return null; } @Override public Certificate[] getServerCertificates() throws SSLPeerUnverifiedException { return null; } }; } | public static String encryptString(String str) { StringBuffer sb = new StringBuffer(); int i; try { MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(str.getBytes()); byte[] md5Bytes = md5.digest(); for (i = 0; i < md5Bytes.length; i++) { sb.append(md5Bytes[i]); } } catch (Exception e) { } return sb.toString(); } | 18,785 |
0 | public static boolean checkVersion(String vers) throws IOException { try { String tmp = ""; URL url = new URL("http://rbmsoft.com.br/apis/ql/index.php?url=null&versao=" + vers); BufferedInputStream buf = new BufferedInputStream(url.openStream()); int dado = 0; char letra; while ((dado = buf.read()) != -1) { letra = (char) dado; tmp += letra; } if (tmp.contains("FALSE")) { return false; } else if (tmp.contains("TRUE")) { new UpdateCheck().updateDialog(); return true; } } catch (MalformedURLException e) { e.printStackTrace(); } return false; } | private void processParameters() throws BadElementException, IOException { type = IMGTEMPLATE; originalType = ORIGINAL_WMF; InputStream is = null; try { String errorID; if (rawData == null) { is = url.openStream(); errorID = url.toString(); } else { is = new java.io.ByteArrayInputStream(rawData); errorID = "Byte array"; } InputMeta in = new InputMeta(is); if (in.readInt() != 0x9AC6CDD7) { throw new BadElementException(MessageLocalization.getComposedMessage("1.is.not.a.valid.placeable.windows.metafile", errorID)); } in.readWord(); int left = in.readShort(); int top = in.readShort(); int right = in.readShort(); int bottom = in.readShort(); int inch = in.readWord(); dpiX = 72; dpiY = 72; scaledHeight = (float) (bottom - top) / inch * 72f; setTop(scaledHeight); scaledWidth = (float) (right - left) / inch * 72f; setRight(scaledWidth); } finally { if (is != null) { is.close(); } plainWidth = getWidth(); plainHeight = getHeight(); } } | 18,786 |
0 | public static String md5String(String string) { try { MessageDigest msgDigest = MessageDigest.getInstance("MD5"); msgDigest.update(string.getBytes("UTF-8")); byte[] digest = msgDigest.digest(); String result = ""; for (int i = 0; i < digest.length; i++) { int value = digest[i]; if (value < 0) value += 256; result += Integer.toHexString(value); } return result; } catch (UnsupportedEncodingException error) { throw new IllegalArgumentException(error); } catch (NoSuchAlgorithmException error) { throw new IllegalArgumentException(error); } } | public void getFile(String url, String filepath) throws BggException { System.out.println(url); int retry = retryCount + 1; lastURL = url; for (retriedCount = 0; retriedCount < retry; retriedCount++) { int responseCode = -1; try { HttpURLConnection con = null; BufferedInputStream bis = null; OutputStream osw = null; try { con = (HttpURLConnection) new URL(url).openConnection(); con.setDoInput(true); setHeaders(con); con.setRequestMethod("GET"); responseCode = con.getResponseCode(); bis = new BufferedInputStream(con.getInputStream()); int data; BufferedOutputStream bos = new BufferedOutputStream(new FileOutputStream(filepath)); while ((data = bis.read()) != -1) bos.write(data); bos.flush(); bos.close(); break; } finally { try { bis.close(); } catch (Exception ignore) { } try { osw.close(); } catch (Exception ignore) { } try { con.disconnect(); } catch (Exception ignore) { } } } catch (IOException ioe) { if (responseCode == UNAUTHORIZED || responseCode == FORBIDDEN) { throw new BggException(ioe.getMessage(), responseCode); } if (retriedCount == retryCount) { throw new BggException(ioe.getMessage(), responseCode); } } try { Thread.sleep(retryIntervalMillis); } catch (InterruptedException ignore) { } } } | 18,787 |
1 | public static String getMD5HashFromString(String message) { String hashword = null; try { MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(message.getBytes()); BigInteger hash = new BigInteger(1, md5.digest()); hashword = hash.toString(16); } catch (NoSuchAlgorithmException nsae) { } return hashword; } | public RandomGUID() { MessageDigest md5 = null; try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { throw new RuntimeException(e.getClass().getName() + ": " + e.getMessage()); } try { long time = System.currentTimeMillis(); long rand = 0; rand = myRand.nextLong(); StringBuffer sb = new StringBuffer(); sb.append(s_id); sb.append(":"); sb.append(Long.toString(time)); sb.append(":"); sb.append(Long.toString(rand)); md5.update(sb.toString().getBytes()); byte[] array = md5.digest(); sb.setLength(0); for (int j = 0; j < array.length; ++j) { int b = array[j] & 0xFF; if (b < 0x10) sb.append('0'); sb.append(Integer.toHexString(b)); } valueAfterMD5 = sb.toString(); } catch (Exception e) { throw new RuntimeException(e.getClass().getName() + ": " + e.getMessage()); } } | 18,788 |
0 | public void readHTMLFromURL(URL url) throws IOException { InputStream in = url.openStream(); try { readHTMLFromStream(new InputStreamReader(in)); } finally { try { in.close(); } catch (IOException ex) { Logger.getLogger(HTMLTextAreaModel.class.getName()).log(Level.SEVERE, "Exception while closing InputStream", ex); } } } | public static void doGet(HttpServletRequest request, HttpServletResponse response, CollOPort colloport, PrintStream out) throws ServletException, IOException { response.addDateHeader("Expires", System.currentTimeMillis() - 86400); String id = request.getParameter("id"); String url_index = request.getParameter("url_index"); int url_i; try { url_i = Integer.parseInt(url_index); } catch (NumberFormatException nfe) { url_i = 0; } Summary summary = colloport.getSummary(id); String filename = request.getPathInfo(); if (filename != null && filename.length() > 0) { filename = filename.substring(1); } String includeURLAll = summary.getIncludeURL(); String includeURLs[] = includeURLAll.split(" "); String includeURL = includeURLs[url_i]; if (includeURL != null && includeURL.length() > 0) { if (filename.indexOf(":") > 0) { includeURL = ""; } else if (filename.startsWith("/")) { includeURL = includeURL.substring(0, includeURL.indexOf("/")); } else if (!includeURL.endsWith("/") && includeURL.indexOf(".") > 0) { includeURL = includeURL.substring(0, includeURL.lastIndexOf("/") + 1); } URL url = null; try { url = new URL(includeURL + response.encodeURL(filename)); } catch (MalformedURLException mue) { System.out.println(mue); } URLConnection conn = null; if (url != null) { try { conn = url.openConnection(); } catch (IOException ioe) { System.out.println(ioe); } } if (conn != null) { String contentType = conn.getContentType(); String contentDisposition; if (contentType == null) { contentType = "application/x-java-serialized-object"; contentDisposition = "attachment;filename=\"" + filename + "\""; } else { contentDisposition = "inline;filename=\"" + filename + "\""; } response.setHeader("content-disposition", contentDisposition); response.setContentType(contentType); try { InputStream inputStream = conn.getInputStream(); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = inputStream.read(buffer)) >= 0) { response.getOutputStream().write(buffer, 0, bytesRead); } inputStream.close(); } catch (IOException ioe) { response.setContentType("text/plain"); ioe.printStackTrace(out); } if (conn instanceof HttpURLConnection) { ((HttpURLConnection) conn).disconnect(); } } } } | 18,789 |
1 | @SuppressWarnings("finally") private void decompress(final File src) throws IOException { final String srcPath = src.getPath(); checkSourceFile(src); final boolean test = this.switches.contains(Switch.test); final File dst; if (test) dst = File.createTempFile("jaxlib-bzip", null); else { if (srcPath.endsWith(".bz2")) dst = new File(srcPath.substring(0, srcPath.length() - 4)); else { this.log.println("WARNING: Can't guess original name, using extension \".out\":").println(srcPath); dst = new File(srcPath + ".out"); } } if (!checkDestFile(dst)) return; final boolean showProgress = this.switches.contains(Switch.showProgress); BZip2InputStream in = null; FileOutputStream out = null; FileChannel outChannel = null; FileLock inLock = null; FileLock outLock = null; try { final FileInputStream in0 = new FileInputStream(src); final FileChannel inChannel = in0.getChannel(); final long inSize = inChannel.size(); inLock = inChannel.tryLock(0, inSize, true); if (inLock == null) throw error("source file locked by another process: " + src); in = new BZip2InputStream(new BufferedXInputStream(in0, 8192)); out = new FileOutputStream(dst); outChannel = out.getChannel(); outLock = outChannel.tryLock(); if (outLock == null) throw error("destination file locked by another process: " + dst); if (showProgress || this.verbose) { this.log.print("source: " + src).print(": size=").println(inSize); this.log.println("target: " + dst); } long pos = 0; int progress = 0; final long maxStep = showProgress ? Math.max(8192, inSize / MAX_PROGRESS) : Integer.MAX_VALUE; while (true) { final long step = outChannel.transferFrom(in, pos, maxStep); if (step <= 0) { final long a = inChannel.size(); if (a != inSize) throw error("file " + src + " has been modified concurrently by another process"); if (inChannel.position() >= inSize) { if (showProgress) { for (int i = progress; i < MAX_PROGRESS; i++) this.log.print('#'); this.log.println(" done"); } break; } } else { pos += step; if (showProgress) { final double p = (double) inChannel.position() / (double) inSize; final int newProgress = (int) (MAX_PROGRESS * p); for (int i = progress; i < newProgress; i++) this.log.print('#'); progress = newProgress; } } } final long outSize = outChannel.size(); in.close(); out.close(); if (this.verbose) { final double ratio = (outSize == 0) ? (inSize * 100) : ((double) inSize / (double) outSize); this.log.print("compressed size: ").print(inSize) .print("; decompressed size: ").print(outSize) .print("; compression ratio: ").print(ratio).println('%'); } if (!test && !this.switches.contains(Switch.keep)) { if (!src.delete()) throw error("unable to delete sourcefile: " + src); } if (test && !dst.delete()) throw error("unable to delete testfile: " + dst); } catch (final IOException ex) { IO.tryClose(in); IO.tryClose(out); IO.tryRelease(inLock); IO.tryRelease(outLock); try { this.log.println(); } finally { throw ex; } } } | private void invokeTest(String queryfile, String target) { try { String query = IOUtils.toString(XPathMarkBenchmarkTest.class.getResourceAsStream(queryfile)).trim(); String args = EXEC_CMD + " \"" + query + "\" \"" + target + '"'; System.out.println("Invoke command: \n " + args); Process proc = Runtime.getRuntime().exec(args, null, benchmarkDir); InputStream is = proc.getInputStream(); File outFile = new File(outDir, queryfile + ".result"); IOUtils.copy(is, new FileOutputStream(outFile)); is.close(); int ret = proc.waitFor(); if (ret != 0) { System.out.println("process exited with value : " + ret); } } catch (IOException ioe) { throw new IllegalStateException(ioe); } catch (InterruptedException irre) { throw new IllegalStateException(irre); } } | 18,790 |
0 | @Test public void testWriteAndReadBigger() throws Exception { JCFSFileServer server = new JCFSFileServer(defaultTcpPort, defaultTcpAddress, defaultUdpPort, defaultUdpAddress, dir, 0, 0); JCFS.configureDiscovery(defaultUdpAddress, defaultUdpPort); try { server.start(); RFile file = new RFile("testreadwrite.txt"); RFileOutputStream out = new RFileOutputStream(file); String body = ""; int size = 50 * 1024; for (int i = 0; i < size; i++) { body = body + "a"; } out.write(body.getBytes("utf-8")); out.close(); File expected = new File(dir, "testreadwrite.txt"); assertTrue(expected.isFile()); assertEquals(body.length(), expected.length()); RFileInputStream in = new RFileInputStream(file); byte[] buffer = new byte[body.length()]; int readCount = in.read(buffer); in.close(); assertEquals(body.length(), readCount); String resultRead = new String(buffer, "utf-8"); assertEquals(body, resultRead); } finally { server.stop(); } } | private Properties loadPropertiesFromURL(String propertiesURL, Properties defaultProperties) { Properties properties = new Properties(defaultProperties); URL url; try { url = new URL(propertiesURL); URLConnection urlConnection = url.openConnection(); properties.load(urlConnection.getInputStream()); } catch (MalformedURLException e) { System.out.println("Error while loading url " + propertiesURL + " (" + e.getClass().getName() + ")"); e.printStackTrace(); } catch (IOException e) { System.out.println("Error while loading url " + propertiesURL + " (" + e.getClass().getName() + ")"); e.printStackTrace(); } return properties; } | 18,791 |
1 | public static void compress(File srcFile, File destFile) throws IOException { InputStream input = null; OutputStream output = null; try { input = new BufferedInputStream(new FileInputStream(srcFile)); output = new GZIPOutputStream(new FileOutputStream(destFile)); IOUtils.copyLarge(input, output); } finally { IOUtils.closeQuietly(output); IOUtils.closeQuietly(input); } } | public void process() { try { update("Shutdown knowledge base ...", 0); DBHelper.shutdownDB(); update("Shutdown knowledge base ...", 9); String zipDir = P.DIR.getPKBDataPath(); update("Backup in progress ...", 10); List<String> fileList = getFilesToZip(zipDir); File file = new File(fileName); ZipOutputStream zout = new ZipOutputStream(new FileOutputStream(file)); byte[] readBuffer = new byte[2156]; int bytesIn = 0; for (int i = 0; i < fileList.size(); i++) { String filePath = fileList.get(i); File f = new File(filePath); FileInputStream fis = new FileInputStream(f); String zipEntryName = f.getPath().substring(zipDir.length() + 1); ZipEntry anEntry = new ZipEntry(zipEntryName); zout.putNextEntry(anEntry); while ((bytesIn = fis.read(readBuffer)) != -1) { zout.write(readBuffer, 0, bytesIn); } fis.close(); int percentage = (int) Math.round((i + 1) * 80.0 / fileList.size()); update("Backup in progress ...", 10 + percentage); } zout.close(); update("Restart knowledge base ...", 91); DBHelper.startDB(); update("Backup is done!", 100); } catch (Exception ex) { ex.printStackTrace(); update("Error occurs during backup!", 100); } } | 18,792 |
0 | public void update(Site site) throws Exception { DBOperation dbo = null; Connection connection = null; PreparedStatement preparedStatement = null; ResultSet resultSet = null; String exp = site.getExtendParent(); String path = site.getPath(); try { String sqlStr = "update t_ip_site set id=?,name=?,description=?,ascii_name=?,remark_number=?,increment_index=?,use_status=?,appserver_id=? where id=?"; dbo = createDBOperation(); connection = dbo.getConnection(); connection.setAutoCommit(false); String[] selfDefinePath = getSelfDefinePath(path, exp, connection, preparedStatement, resultSet); selfDefineDelete(selfDefinePath, connection, preparedStatement); selfDefineAdd(selfDefinePath, site, connection, preparedStatement); preparedStatement = connection.prepareStatement(sqlStr); preparedStatement.setInt(1, site.getSiteID()); preparedStatement.setString(2, site.getName()); preparedStatement.setString(3, site.getDescription()); preparedStatement.setString(4, site.getAsciiName()); preparedStatement.setInt(5, site.getRemarkNumber()); preparedStatement.setString(6, site.getIncrementIndex().trim()); preparedStatement.setString(7, String.valueOf(site.getUseStatus())); preparedStatement.setString(8, String.valueOf(site.getAppserverID())); preparedStatement.setInt(9, site.getSiteID()); preparedStatement.executeUpdate(); connection.commit(); int resID = site.getSiteID() + Const.SITE_TYPE_RES; StructResource sr = new StructResource(); sr.setResourceID(Integer.toString(resID)); sr.setOperateID(Integer.toString(1)); sr.setOperateTypeID(Const.OPERATE_TYPE_ID); sr.setTypeID(Const.RES_TYPE_ID); StructAuth sa = new AuthorityManager().getExternalAuthority(sr); int authID = sa.getAuthID(); if (authID == 0) { String resName = site.getName(); int resTypeID = Const.RES_TYPE_ID; int operateTypeID = Const.OPERATE_TYPE_ID; String remark = ""; AuthorityManager am = new AuthorityManager(); am.createExtResource(Integer.toString(resID), resName, resTypeID, operateTypeID, remark); } site.wirteFile(); } catch (SQLException ex) { connection.rollback(); log.error("����վ������ʧ��!", ex); throw ex; } finally { close(resultSet, null, preparedStatement, connection, dbo); } } | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | 18,793 |
0 | private HttpURLConnection getItemURLConnection(final String method, final String id, final byte[] data, final Map<String, List<String>> headers) throws IOException { if (m_bucket == null) { throw new IllegalArgumentException("bucket is not set"); } final URL itemURL = new URL("http://" + m_host + "/" + m_bucket + "/" + id); final HttpURLConnection urlConn = (HttpURLConnection) itemURL.openConnection(); urlConn.setRequestMethod(method); urlConn.setReadTimeout(READ_TIMEOUT); if (headers != null) { for (final Map.Entry<String, List<String>> me : headers.entrySet()) { for (final String v : me.getValue()) { urlConn.setRequestProperty(me.getKey(), v); } } } addAuthorization(urlConn, method, data); return urlConn; } | public synchronized String encrypt(String plaintext) throws ServiceRuntimeException { MessageDigest md = null; try { md = MessageDigest.getInstance("SHA"); } catch (NoSuchAlgorithmException e) { throw new ServiceRuntimeException(e.getMessage()); } try { md.update(plaintext.getBytes("UTF-8")); } catch (UnsupportedEncodingException e) { throw new ServiceRuntimeException(e.getMessage()); } byte raw[] = md.digest(); String hash = (new BASE64Encoder()).encode(raw); return hash; } | 18,794 |
1 | void IconmenuItem6_actionPerformed(ActionEvent e) { JFileChooser jFileChooser1 = new JFileChooser(); String separator = ""; if (JFileChooser.APPROVE_OPTION == jFileChooser1.showOpenDialog(this.getFatherFrame())) { setDefaultPath(jFileChooser1.getSelectedFile().getPath()); separator = jFileChooser1.getSelectedFile().separator; File dirImg = new File("." + separator + "images"); if (!dirImg.exists()) { dirImg.mkdir(); } int index = getDefaultPath().lastIndexOf(separator); String imgName = getDefaultPath().substring(index); String newPath = dirImg + imgName; try { File inputFile = new File(getDefaultPath()); File outputFile = new File(newPath); FileInputStream in = new FileInputStream(inputFile); FileOutputStream out = new FileOutputStream(outputFile); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); } catch (Exception ex) { ex.printStackTrace(); LogHandler.log(ex.getMessage(), Level.INFO, "LOG_MSG", isLoggingEnabled()); JOptionPane.showMessageDialog(null, ex.getMessage().substring(0, Math.min(ex.getMessage().length(), getFatherPanel().MAX_DIALOG_MSG_SZ)) + "-" + getClass(), "", JOptionPane.ERROR_MESSAGE); } setDefaultPath(newPath); createDefaultImage(); } } | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | 18,795 |
1 | private void saveFile(Folder folder, Object key, InputStream stream) throws FileManagerException { File file = new File(folder, key.toString()); LOGGER.debug("Writing file: " + file.getAbsolutePath()); Writer writer = null; Writer encodedWriter = null; try { encodedWriter = new OutputStreamWriter(new FileOutputStream(file), getEncodeCharset()); IOUtils.copy(stream, encodedWriter, getDecodeCharset()); LOGGER.info("saveFile(), decode charset: " + getDecodeCharset() + ", encode charset: " + getEncodeCharset()); } catch (IOException e) { throw new FileManagerException("Unable to write to file: " + file.getAbsolutePath(), e); } finally { try { encodedWriter.close(); } catch (IOException e) { throw new FileManagerException("Unable to write to file: " + file.getAbsolutePath(), e); } } } | private void copy(FileInfo inputFile, FileInfo outputFile) { try { FileReader in = new FileReader(inputFile.file); FileWriter out = new FileWriter(outputFile.file); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); outputFile.file.setLastModified(inputFile.lastModified); } catch (IOException e) { } } | 18,796 |
1 | private Dataset(File f, Properties p, boolean ro) throws DatabaseException { folder = f; logger.debug("Opening dataset [" + ((ro) ? "readOnly" : "read/write") + " mode]"); readOnly = ro; logger = Logger.getLogger(Dataset.class); logger.debug("Opening environment: " + f); EnvironmentConfig envConfig = new EnvironmentConfig(); envConfig.setTransactional(false); envConfig.setAllowCreate(!readOnly); envConfig.setReadOnly(readOnly); env = new Environment(f, envConfig); File props = new File(folder, "dataset.properties"); if (!ro && p != null) { this.properties = p; try { FileOutputStream fos = new FileOutputStream(props); p.store(fos, null); fos.close(); } catch (IOException e) { logger.warn("Error saving dataset properties", e); } } else { if (props.exists()) { try { Properties pr = new Properties(); FileInputStream fis = new FileInputStream(props); pr.load(fis); fis.close(); this.properties = pr; } catch (IOException e) { logger.warn("Error reading dataset properties", e); } } } getPaths(); getNamespaces(); getTree(); pathDatabases = new HashMap(); frequencyDatabases = new HashMap(); lengthDatabases = new HashMap(); clustersDatabases = new HashMap(); pathMaps = new HashMap(); frequencyMaps = new HashMap(); lengthMaps = new HashMap(); clustersMaps = new HashMap(); } | @Override protected void write(InputStream in, OutputStream out, javax.sound.sampled.AudioFormat javaSoundFormat) throws IOException { if (USE_JAVASOUND) { super.write(in, out, javaSoundFormat); } else { try { byte[] header = JavaSoundCodec.createWavHeader(javaSoundFormat); if (header == null) throw new IOException("Unable to create wav header"); out.write(header); IOUtils.copyStream(in, out); } catch (InterruptedIOException e) { logger.log(Level.FINE, "" + e, e); throw e; } catch (IOException e) { logger.log(Level.WARNING, "" + e, e); throw e; } } } | 18,797 |
1 | private void readObject(ObjectInputStream in) throws IOException, ClassNotFoundException { in.defaultReadObject(); OutputStream output = getOutputStream(); if (cachedContent != null) { output.write(cachedContent); } else { FileInputStream input = new FileInputStream(dfosFile); IOUtils.copy(input, output); dfosFile.delete(); dfosFile = null; } output.close(); cachedContent = null; } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 18,798 |
1 | private void copyFromZip(File zipFile) throws GLMRessourceManagerException { if (zipFile == null) throw new GLMRessourceZIPException(1); if (!zipFile.exists()) throw new GLMRessourceZIPException(2); int len = 0; byte[] buffer = ContentManager.getDefaultBuffer(); try { ZipInputStream zip_in = new ZipInputStream(new BufferedInputStream(new FileInputStream(zipFile))); ZipEntry zipEntry; File rootDir = null; while ((zipEntry = zip_in.getNextEntry()) != null) { File destFile = new File(tempDirectory, zipEntry.getName()); if (rootDir == null) rootDir = destFile.getParentFile(); if (!zipEntry.isDirectory() && destFile.getParentFile().equals(rootDir)) { if (!zipEntry.getName().equals(ContentManager.IMS_MANIFEST_FILENAME)) { FileOutputStream file_out = new FileOutputStream(new File(tempDirectory, zipEntry.getName())); while ((len = zip_in.read(buffer)) > 0) file_out.write(buffer, 0, len); file_out.flush(); file_out.close(); } } } zip_in.close(); } catch (Exception e) { throw new GLMRessourceZIPException(3); } } | private String copyTutorial() throws IOException { File inputFile = new File(getFilenameForOriginalTutorial()); File outputFile = new File(getFilenameForCopiedTutorial()); FileReader in = new FileReader(inputFile); FileWriter out = new FileWriter(outputFile); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); return getFilenameForCopiedTutorial(); } | 18,799 |
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