label int64 0 1 | func1 stringlengths 173 53.1k | func2 stringlengths 173 53.1k | id int64 0 901k |
|---|---|---|---|
0 | public GridDirectoryList(URL url) throws McIDASException { try { urlc = (AddeURLConnection) url.openConnection(); inputStream = new DataInputStream(new BufferedInputStream(urlc.getInputStream())); } catch (IOException e) { throw new McIDASException("Error opening URL for grids:" + e); } readDirectory(); } | public static Image getPluginImage(Object plugin, String name) { try { try { URL url = getPluginImageURL(plugin, name); if (m_URLImageMap.containsKey(url)) return m_URLImageMap.get(url); InputStream is = url.openStream(); Image image; try { image = getImage(is); m_URLImageMap.put(url, image); } finally { is.close(); } return image; } catch (Throwable e) { } } catch (Throwable e) { } return null; } | 885,200 |
0 | private void createTab2(TabLayoutPanel tab) { ScrollingGraphicalViewer viewer; try { viewer = new ScrollingGraphicalViewer(); viewer.createControl(); ScalableFreeformRootEditPart root = new ScalableFreeformRootEditPart(); viewer.setRootEditPart(root); viewer.setEditDomain(new EditDomain()); viewer.setEditPartFactory(new org.drawx.gef.sample.client.tool.example.editparts.MyEditPartFactory()); CanvasModel model = new CanvasModel(); for (int i = 0; i < 1; i++) { MyConnectionModel conn = new MyConnectionModel(); OrangeModel m1 = new OrangeModel(new Point(30, 230)); OrangeModel m2 = new OrangeModel(new Point(0, 0)); model.addChild(m1); model.addChild(m2); m1.addSourceConnection(conn); m2.addTargetConnection(conn); viewer.setContents(model); } DiagramEditor p = new DiagramEditor(viewer); viewer.setContextMenu(new MyContextMenuProvider(viewer, p.getActionRegistry())); VerticalPanel panel = new VerticalPanel(); addToolbox(viewer.getEditDomain(), viewer, panel); panel.add(viewer.getControl().getWidget()); tab.add(panel, "Fixed Size Canvas(+Overview)"); addOverview(viewer, panel); viewer.getControl().setSize(400, 300); } catch (Throwable e) { e.printStackTrace(); } } | public static void checkForUpdate(String version) { try { URL url = new URL(WiimoteWhiteboard.getProperty("updateURL")); BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream())); final String current = in.readLine(); if (compare(version, current)) showUpdateNotification(version, current); in.close(); } catch (Exception e) { } } | 885,201 |
1 | public static void copyFile3(File srcFile, File destFile) throws IOException { InputStream in = new FileInputStream(srcFile); OutputStream out = new FileOutputStream(destFile); byte[] buf = new byte[1024]; int len; while((len = in.read(buf)) > 0) { out.write(buf, 0, len); } in.close(); out.close(); } | public static void copy(String fromFileName, String toFileName) throws IOException { File fromFile = new File(fromFileName); File toFile = new File(toFileName); if (!fromFile.exists()) throw new IOException("FileCopy: " + "no such source file: " + fromFileName); if (!fromFile.isFile()) throw new IOException("FileCopy: " + "can't copy directory: " + fromFileName); if (!fromFile.canRead()) throw new IOException("FileCopy: " + "source file is unreadable: " + fromFileName); if (toFile.isDirectory()) toFile = new File(toFile, fromFile.getName()); if (toFile.exists()) { if (!toFile.canWrite()) throw new IOException("FileCopy: " + "destination file is unwriteable: " + toFileName); System.out.print("Overwrite existing file " + toFile.getName() + "? (Y/N): "); System.out.flush(); BufferedReader in = new BufferedReader(new InputStreamReader(System.in)); String response = in.readLine(); if (!response.equals("Y") && !response.equals("y")) throw new IOException("FileCopy: " + "existing file was not overwritten."); } else { String parent = toFile.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) throw new IOException("FileCopy: " + "destination directory doesn't exist: " + parent); if (dir.isFile()) throw new IOException("FileCopy: " + "destination is not a directory: " + parent); if (!dir.canWrite()) throw new IOException("FileCopy: " + "destination directory is unwriteable: " + parent); } FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(fromFile); to = new FileOutputStream(toFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead); } finally { if (from != null) try { from.close(); } catch (IOException e) { ; } if (to != null) try { to.close(); } catch (IOException e) { ; } } } | 885,202 |
1 | public static boolean copy(File source, File target) { try { if (!source.exists()) return false; target.getParentFile().mkdirs(); InputStream input = new FileInputStream(source); OutputStream output = new FileOutputStream(target); byte[] buf = new byte[1024]; int len; while ((len = input.read(buf)) > 0) output.write(buf, 0, len); input.close(); output.close(); return true; } catch (Exception exc) { exc.printStackTrace(); return false; } } | public void copyFile(String oldPathFile, String newPathFile) { try { int bytesum = 0; int byteread = 0; File oldfile = new File(oldPathFile); if (oldfile.exists()) { InputStream inStream = new FileInputStream(oldPathFile); FileOutputStream fs = new FileOutputStream(newPathFile); byte[] buffer = new byte[1444]; while ((byteread = inStream.read(buffer)) != -1) { bytesum += byteread; System.out.println(bytesum); fs.write(buffer, 0, byteread); } inStream.close(); } } catch (Exception e) { message = ("���Ƶ����ļ���������"); } } | 885,203 |
0 | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | private static void testTidy() { try { String url = "http://groups.google.com/group/dengues/files"; java.io.InputStream is = new java.net.URL(url).openStream(); org.w3c.dom.Document doc = dengues.system.HTMLWebHelper.parseDOM(is); org.w3c.dom.NodeList list = doc.getElementsByTagName("td"); org.w3c.dom.Element stockTypeElement = null; for (int i = 0; i < list.getLength(); i++) { org.w3c.dom.Node item = list.item(i); String content = dengues.system.HTMLWebHelper.getContent(item); String convert = dengues.system.HTMLWebHelper.convert(content); if (convert.equals("zDevil")) { stockTypeElement = (org.w3c.dom.Element) item.getParentNode().getParentNode(); break; } } if (stockTypeElement != null) { org.w3c.dom.NodeList trList = stockTypeElement.getElementsByTagName("tr"); for (int i = 0; i < trList.getLength(); i++) { org.w3c.dom.NodeList trListChildren = trList.item(i).getChildNodes(); if (trListChildren.getLength() > 2) { org.w3c.dom.Node node_0 = trListChildren.item(0); org.w3c.dom.Node node_1 = trListChildren.item(1); String content = dengues.system.HTMLWebHelper.getContent(node_0); String convert_0 = dengues.system.HTMLWebHelper.convert(content); content = dengues.system.HTMLWebHelper.getContent(node_1); String convert_1 = dengues.system.HTMLWebHelper.convert(content); if (!"".equals(convert_0)) { System.out.println(convert_0 + " => " + convert_1); } } } } is.close(); } catch (java.net.MalformedURLException ex) { ex.printStackTrace(); } catch (java.io.IOException ex) { ex.printStackTrace(); } } | 885,204 |
0 | protected BufferedImage handleGMUException() { if (params.uri.startsWith("http://mars.gmu.edu:8080")) try { URLConnection connection = new URL(params.uri).openConnection(); int index = params.uri.lastIndexOf("?"); params.uri = "<img class=\"itemthumb\" src=\""; BufferedReader reader = new BufferedReader(new InputStreamReader(connection.getInputStream())); String url = null; while ((url = reader.readLine()) != null) { index = url.indexOf(params.uri); if (index != -1) { url = "http://mars.gmu.edu:8080" + url.substring(index + 28); url = url.substring(0, url.indexOf("\" alt=\"")); break; } } if (url != null) { connection = new URL(url).openConnection(); return processNewUri(connection); } } catch (Exception e) { } return null; } | public Object run() { if (type == GET_THEME_DIR) { String sep = File.separator; String[] dirs = new String[] { userHome + sep + ".themes", System.getProperty("swing.metacitythemedir"), "/usr/share/themes", "/usr/gnome/share/themes", "/opt/gnome2/share/themes" }; URL themeDir = null; for (int i = 0; i < dirs.length; i++) { if (dirs[i] == null) { continue; } File dir = new File(dirs[i] + sep + arg + sep + "metacity-1"); if (new File(dir, "metacity-theme-1.xml").canRead()) { try { themeDir = dir.toURL(); } catch (MalformedURLException ex) { themeDir = null; } break; } } if (themeDir == null) { String filename = "resources/metacity/" + arg + "/metacity-1/metacity-theme-1.xml"; URL url = getClass().getResource(filename); if (url != null) { String str = url.toString(); try { themeDir = new URL(str.substring(0, str.lastIndexOf('/')) + "/"); } catch (MalformedURLException ex) { themeDir = null; } } } return themeDir; } else if (type == GET_USER_THEME) { try { userHome = System.getProperty("user.home"); String theme = System.getProperty("swing.metacitythemename"); if (theme != null) { return theme; } URL url = new URL(new File(userHome).toURL(), ".gconf/apps/metacity/general/%25gconf.xml"); Reader reader = new InputStreamReader(url.openStream(), "ISO-8859-1"); char[] buf = new char[1024]; StringBuffer strBuf = new StringBuffer(); int n; while ((n = reader.read(buf)) >= 0) { strBuf.append(buf, 0, n); } reader.close(); String str = strBuf.toString(); if (str != null) { String strLowerCase = str.toLowerCase(); int i = strLowerCase.indexOf("<entry name=\"theme\""); if (i >= 0) { i = strLowerCase.indexOf("<stringvalue>", i); if (i > 0) { i += "<stringvalue>".length(); int i2 = str.indexOf("<", i); return str.substring(i, i2); } } } } catch (MalformedURLException ex) { } catch (IOException ex) { } return null; } else if (type == GET_IMAGE) { return new ImageIcon((URL) arg).getImage(); } else { return null; } } | 885,205 |
0 | private static void copy(File source, File target) throws IOException { InputStream is = null; OutputStream os = null; try { is = new BufferedInputStream(new FileInputStream(source)); os = new BufferedOutputStream(new FileOutputStream(target)); int b; while ((b = is.read()) > -1) os.write(b); } finally { try { if (is != null) is.close(); } catch (IOException ignore) { } try { if (os != null) os.close(); } catch (IOException ignore) { } } } | public static String mdFive(String string) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md = MessageDigest.getInstance("MD5"); byte[] array = new byte[32]; md.update(string.getBytes("iso-8859-1"), 0, string.length()); array = md.digest(); return convertToHex(array); } | 885,206 |
1 | public static byte[] expandPasswordToKey(String password, int keyLen, byte[] salt) { try { MessageDigest md5 = MessageDigest.getInstance("MD5"); int digLen = md5.getDigestLength(); byte[] mdBuf = new byte[digLen]; byte[] key = new byte[keyLen]; int cnt = 0; while (cnt < keyLen) { if (cnt > 0) { md5.update(mdBuf); } md5.update(password.getBytes()); md5.update(salt); md5.digest(mdBuf, 0, digLen); int n = ((digLen > (keyLen - cnt)) ? keyLen - cnt : digLen); System.arraycopy(mdBuf, 0, key, cnt, n); cnt += n; } return key; } catch (Exception e) { throw new Error("Error in SSH2KeyPairFile.expandPasswordToKey: " + e); } } | private JeeObserverServerContext(JeeObserverServerContextProperties properties) throws DatabaseException, ServerException { super(); try { final MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(("JE" + System.currentTimeMillis()).getBytes()); final BigInteger hash = new BigInteger(1, md5.digest()); this.sessionId = hash.toString(16).toUpperCase(); } catch (final Exception e) { this.sessionId = "JE" + System.currentTimeMillis(); JeeObserverServerContext.logger.log(Level.WARNING, "JeeObserver Server session ID MD5 error: {0}", this.sessionId); JeeObserverServerContext.logger.log(Level.FINEST, e.getMessage(), e); } try { @SuppressWarnings("unchecked") final Class<DatabaseHandler> databaseHandlerClass = (Class<DatabaseHandler>) Class.forName(properties.getDatabaseHandler()); final Constructor<DatabaseHandler> handlerConstructor = databaseHandlerClass.getConstructor(new Class<?>[] { String.class, String.class, String.class, String.class, String.class, Integer.class }); this.databaseHandler = handlerConstructor.newInstance(new Object[] { properties.getDatabaseDriver(), properties.getDatabaseUrl(), properties.getDatabaseUser(), properties.getDatabasePassword(), properties.getDatabaseSchema(), new Integer(properties.getDatabaseConnectionPoolSize()) }); } catch (final Exception e) { throw new ServerException("Database handler loading exception.", e); } this.databaseHandlerTimer = new Timer(JeeObserverServerContext.DATABASE_HANDLER_TASK_NAME, true); this.server = new JeeObserverServer(properties.getServerPort()); this.enabled = true; this.properties = properties; this.startTimestamp = new Date(); try { this.ip = InetAddress.getLocalHost().getHostAddress(); } catch (final UnknownHostException e) { JeeObserverServerContext.logger.log(Level.SEVERE, e.getMessage(), e); } this.operatingSystemName = System.getProperty("os.name"); this.operatingSystemVersion = System.getProperty("os.version"); this.operatingSystemArchitecture = System.getProperty("os.arch"); this.javaVersion = System.getProperty("java.version"); this.javaVendor = System.getProperty("java.vendor"); } | 885,207 |
0 | private void _scanForMetaData(URL _url) throws java.io.IOException { if (DEBUG.Enabled) System.out.println(this + " _scanForMetaData: xml props " + mXMLpropertyList); if (DEBUG.Enabled) System.out.println("*** Opening connection to " + _url); markAccessAttempt(); Properties metaData = scrapeHTMLmetaData(_url.openConnection(), 2048); if (DEBUG.Enabled) System.out.println("*** Got meta-data " + metaData); markAccessSuccess(); String title = metaData.getProperty("title"); if (title != null && title.length() > 0) { setProperty("title", title); title = title.replace('\n', ' ').trim(); setTitle(title); } try { setByteSize(Integer.parseInt((String) getProperty("contentLength"))); } catch (Exception e) { } } | public static Image getPluginImage(Object plugin, String name) { try { URL url = getPluginImageURL(plugin, name); InputStream is = url.openStream(); Image image; try { image = getImage(is); } finally { is.close(); } return image; } catch (Throwable e) { } return null; } | 885,208 |
0 | public static String getUserPass(String user) throws NoSuchAlgorithmException { MessageDigest digest = MessageDigest.getInstance("MD5"); digest.update(user.getBytes()); byte[] hash = digest.digest(); System.out.println("Returning user pass:" + hash); return hash.toString(); } | public static void copyFile(File in, File out) { if (!in.exists() || !in.canRead()) { LOGGER.warn("Can't copy file : " + in); return; } if (!out.getParentFile().exists()) { if (!out.getParentFile().mkdirs()) { LOGGER.info("Didn't create parent directories : " + out.getParentFile().getAbsolutePath()); } } if (!out.exists()) { try { out.createNewFile(); } catch (IOException e) { LOGGER.error("Exception creating new file : " + out.getAbsolutePath(), e); } } LOGGER.debug("Copying file : " + in + ", to : " + out); FileChannel inChannel = null; FileChannel outChannel = null; FileInputStream fileInputStream = null; FileOutputStream fileOutputStream = null; try { fileInputStream = new FileInputStream(in); inChannel = fileInputStream.getChannel(); fileOutputStream = new FileOutputStream(out); outChannel = fileOutputStream.getChannel(); inChannel.transferTo(0, inChannel.size(), outChannel); } catch (Exception e) { LOGGER.error("Exception copying file : " + in + ", to : " + out, e); } finally { close(fileInputStream); close(fileOutputStream); if (inChannel != null) { try { inChannel.close(); } catch (Exception e) { LOGGER.error("Exception closing input channel : ", e); } } if (outChannel != null) { try { outChannel.close(); } catch (Exception e) { LOGGER.error("Exception closing output channel : ", e); } } } } | 885,209 |
0 | public static byte[] wrapBMP(Image image) throws IOException { if (image.getOriginalType() != Image.ORIGINAL_BMP) throw new IOException("Only BMP can be wrapped in WMF."); InputStream imgIn; byte data[] = null; if (image.getOriginalData() == null) { imgIn = image.url().openStream(); ByteArrayOutputStream out = new ByteArrayOutputStream(); int b = 0; while ((b = imgIn.read()) != -1) out.write(b); imgIn.close(); data = out.toByteArray(); } else data = image.getOriginalData(); int sizeBmpWords = (data.length - 14 + 1) >>> 1; ByteArrayOutputStream os = new ByteArrayOutputStream(); writeWord(os, 1); writeWord(os, 9); writeWord(os, 0x0300); writeDWord(os, 9 + 4 + 5 + 5 + (13 + sizeBmpWords) + 3); writeWord(os, 1); writeDWord(os, 14 + sizeBmpWords); writeWord(os, 0); writeDWord(os, 4); writeWord(os, META_SETMAPMODE); writeWord(os, 8); writeDWord(os, 5); writeWord(os, META_SETWINDOWORG); writeWord(os, 0); writeWord(os, 0); writeDWord(os, 5); writeWord(os, META_SETWINDOWEXT); writeWord(os, (int) image.height()); writeWord(os, (int) image.width()); writeDWord(os, 13 + sizeBmpWords); writeWord(os, META_DIBSTRETCHBLT); writeDWord(os, 0x00cc0020); writeWord(os, (int) image.height()); writeWord(os, (int) image.width()); writeWord(os, 0); writeWord(os, 0); writeWord(os, (int) image.height()); writeWord(os, (int) image.width()); writeWord(os, 0); writeWord(os, 0); os.write(data, 14, data.length - 14); if ((data.length & 1) == 1) os.write(0); writeDWord(os, 3); writeWord(os, 0); os.close(); return os.toByteArray(); } | public File nextEntry() { try { while (hasNext()) { String name = waitingArchEntry.getName(); name = name.substring(name.indexOf("/") + 1); File file = new File(targetDir.getAbsolutePath() + "/" + name); if (waitingArchEntry.isDirectory()) { file.mkdirs(); waitingArchEntry = ais.getNextEntry(); } else { OutputStream os = new FileOutputStream(file); try { IOUtils.copy(ais, os); } finally { IOUtils.closeQuietly(os); } return file; } } } catch (IOException e) { return null; } return null; } | 885,210 |
0 | public FTPUtil(final String server) { log.debug("~ftp.FTPUtil() : Creating object"); ftpClient = new FTPClient(); try { ftpClient.connect(server); ftpClient.login("anonymous", ""); ftpClient.setConnectTimeout(120000); ftpClient.setSoTimeout(120000); final int reply = ftpClient.getReplyCode(); if (!FTPReply.isPositiveCompletion(reply)) { final String errMsg = "Non-positive completion connecting FTPClient"; log.warn("~ftp.FTPUtil() : [" + errMsg + "]"); } } catch (IOException ioe) { final String errMsg = "Cannot connect and login to ftpClient [" + ioe.getMessage() + "]"; log.warn("~ftp.FTPUtil() : [" + errMsg + "]"); ioe.printStackTrace(); } } | public static boolean checkEncryptedPassword(String md5key, String passwordAccount, String encryptedPassword, int passwdenc) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md = MessageDigest.getInstance(Constants.ALGORITHM); switch(passwdenc) { case 1: md.update((md5key + encryptedPassword).getBytes("8859_1")); return md.digest().equals(passwordAccount.getBytes("8859_1")); case 2: md.update((encryptedPassword + md5key).getBytes("8859_1")); return md.digest().equals(passwordAccount.getBytes("8859_1")); default: return false; } } | 885,211 |
0 | protected String readFileUsingHttp(String fileUrlName) { String response = ""; try { URL url = new URL(fileUrlName); URLConnection connection = url.openConnection(); HttpURLConnection httpConn = (HttpURLConnection) connection; httpConn.setRequestProperty("Content-Type", "text/html"); httpConn.setRequestProperty("Content-Length", "0"); httpConn.setRequestMethod("GET"); httpConn.setDoOutput(true); httpConn.setDoInput(true); httpConn.setAllowUserInteraction(false); InputStreamReader isr = new InputStreamReader(httpConn.getInputStream()); BufferedReader in = new BufferedReader(isr); String inputLine = ""; while ((inputLine = in.readLine()) != null) { response += inputLine + "\n"; } if (response.endsWith("\n")) { response = response.substring(0, response.length() - 1); } in.close(); } catch (Exception x) { x.printStackTrace(); } return response; } | public void upgradeSingleFileModelToDirectory(File modelFile) throws IOException { byte[] buf = new byte[8192]; int bytesRead = 0; File backupModelFile = new File(modelFile.getPath() + ".bak"); FileInputStream oldModelIn = new FileInputStream(modelFile); FileOutputStream backupModelOut = new FileOutputStream(backupModelFile); while ((bytesRead = oldModelIn.read(buf)) >= 0) { backupModelOut.write(buf, 0, bytesRead); } backupModelOut.close(); oldModelIn.close(); buf = null; modelFile.delete(); modelFile.mkdir(); BufferedReader oldModelsBuff = new BomStrippingInputStreamReader(new FileInputStream(backupModelFile), "UTF-8"); File metaDataFile = new File(modelFile, ConstantParameters.FILENAMEOFModelMetaData); BufferedWriter metaDataBuff = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(metaDataFile), "UTF-8")); for (int i = 0; i < 8; i++) { metaDataBuff.write(oldModelsBuff.readLine()); metaDataBuff.write('\n'); } metaDataBuff.close(); int classIndex = 1; BufferedWriter modelWriter = null; String line = null; while ((line = oldModelsBuff.readLine()) != null) { if (line.startsWith("Class=") && line.contains("numTraining=") && line.contains("numPos=")) { if (modelWriter != null) { modelWriter.close(); } File nextModel = new File(modelFile, String.format(ConstantParameters.FILENAMEOFPerClassModel, Integer.valueOf(classIndex++))); modelWriter = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(nextModel), "UTF-8")); } modelWriter.write(line); modelWriter.write('\n'); } if (modelWriter != null) { modelWriter.close(); } } | 885,212 |
0 | protected static File UrlGzipToAFile(File dir, String urlSt, String fileName) throws CaughtException { try { URL url = new URL(urlSt); InputStream zipped = url.openStream(); InputStream unzipped = new GZIPInputStream(zipped); File tempFile = new File(dir, fileName); copyFile(tempFile, unzipped); return tempFile; } catch (IOException e) { throw new CaughtException(e, logger); } } | public static void copyFile(File in, File out) throws IOException { FileChannel sourceChannel = new FileInputStream(in).getChannel(); FileChannel destinationChannel = new FileOutputStream(out).getChannel(); try { sourceChannel.transferTo(0, sourceChannel.size(), destinationChannel); } finally { sourceChannel.close(); destinationChannel.close(); } } | 885,213 |
0 | private static String getDigestPassword(String streamId, String password) { MessageDigest md = null; try { md = MessageDigest.getInstance("SHA"); } catch (NoSuchAlgorithmException e) { throw (RuntimeException) new IllegalStateException().initCause(e); } md.update((streamId + password).getBytes()); byte[] uid = md.digest(); int length = uid.length; StringBuilder digPass = new StringBuilder(); for (int i = 0; i < length; ) { int k = uid[i++]; int iint = k & 0xff; String buf = Integer.toHexString(iint); if (buf.length() == 1) { buf = "0" + buf; } digPass.append(buf); } return digPass.toString(); } | public boolean downloadFile(String webdir, String fileName, String localdir) { boolean result = false; checkDownLoadDirectory(localdir); FTPClient ftp = new FTPClient(); try { ftp.connect(url); ftp.login(username, password); if (!"".equals(webdir.trim())) ftp.changeDirectory(webdir); ftp.download(fileName, new File(localdir + "//" + fileName)); result = true; ftp.disconnect(true); } catch (IllegalStateException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } catch (FTPIllegalReplyException e) { e.printStackTrace(); } catch (FTPException e) { e.printStackTrace(); } catch (FTPDataTransferException e) { e.printStackTrace(); } catch (FTPAbortedException e) { e.printStackTrace(); } return result; } | 885,214 |
1 | public void load(String filename) throws VisbardException { String defaultFilename = VisbardMain.getSettingsDir() + File.separator + DEFAULT_SETTINGS_FILE; File defaultFile = new File(defaultFilename); InputStream settingsInStreamFromFile = null; try { sLogger.info("Loading settings from : " + defaultFilename); settingsInStreamFromFile = new FileInputStream(defaultFile); } catch (FileNotFoundException fnf) { sLogger.info("Unable to load custom settings from user's settings directory (" + fnf.getMessage() + "); reverting to default settings"); try { InputStream settingsInStreamFromJar = VisbardMain.class.getClassLoader().getResourceAsStream(filename); FileOutputStream settingsOutStream = new FileOutputStream(defaultFile); int c; while ((c = settingsInStreamFromJar.read()) != -1) settingsOutStream.write(c); settingsInStreamFromJar.close(); settingsOutStream.close(); settingsInStreamFromFile = new FileInputStream(defaultFile); } catch (IOException ioe) { sLogger.warn("Unable to copy default settings to user's settings directory (" + ioe.getMessage() + "); using default settings from ViSBARD distribution package"); settingsInStreamFromFile = VisbardMain.class.getClassLoader().getResourceAsStream(filename); } } this.processSettingsFile(settingsInStreamFromFile, filename); } | public static void copyFile(File sourceFile, String toDir, boolean create, boolean overwrite) throws FileNotFoundException, IOException { FileInputStream source = null; FileOutputStream destination = null; byte[] buffer; int bytes_read; File toFile = new File(toDir); if (create && !toFile.exists()) toFile.mkdirs(); if (toFile.exists()) { File destFile = new File(toDir + "/" + sourceFile.getName()); try { if (!destFile.exists() || overwrite) { source = new FileInputStream(sourceFile); destination = new FileOutputStream(destFile); buffer = new byte[1024]; while (true) { bytes_read = source.read(buffer); if (bytes_read == -1) break; destination.write(buffer, 0, bytes_read); } } } catch (Exception exx) { exx.printStackTrace(); } finally { if (source != null) try { source.close(); } catch (IOException e) { } if (destination != null) try { destination.close(); } catch (IOException e) { } } } } | 885,215 |
0 | public static String doPost(String http_url, String post_data) { if (post_data == null) { post_data = ""; } try { URLConnection conn = new URL(http_url).openConnection(); conn.setDoInput(true); conn.setDoOutput(true); conn.setUseCaches(false); conn.setRequestProperty("Content-Type", "application/x-www-form-urlencoded"); DataOutputStream out = new DataOutputStream(conn.getOutputStream()); out.writeBytes(post_data); out.flush(); out.close(); BufferedReader in = new BufferedReader(new InputStreamReader(conn.getInputStream())); String line; StringBuffer buffer = new StringBuffer(); while ((line = in.readLine()) != null) { buffer.append(line); buffer.append("\n"); } return buffer.toString(); } catch (IOException e) { ; } catch (ClassCastException e) { e.printStackTrace(); } return null; } | protected BufferedImage handleNLIBException() { if (params.uri.startsWith("http://digar.nlib.ee/otsing/") || params.uri.startsWith("http://digar.nlib.ee/show")) try { String url = "http://digar.nlib.ee/gmap/nd" + params.uri.substring(params.uri.indexOf(":") + 1, params.uri.lastIndexOf("&")) + "-tiles/z0x0y0.jpeg"; URLConnection connection = new URL(url).openConnection(); return processNewUri(connection); } catch (Exception e) { try { if (params.uri.startsWith("http://digar.nlib.ee/show")) params.uri = "http://digar.nlib.ee/otsing/?pid=" + params.uri.substring(params.uri.lastIndexOf("/") + 1) + "&show"; URLConnection connection = new URL(params.uri).openConnection(); String url = params.uri; if (url.endsWith("&show")) url = url.substring(0, url.length() - 5); int index = url.lastIndexOf("?"); url = "stream" + url.substring(index); BufferedReader reader = new BufferedReader(new InputStreamReader(connection.getInputStream())); String aux = null; while ((aux = reader.readLine()) != null) { index = aux.indexOf(url); if (index != -1) { url = "http://digar.nlib.ee/otsing/" + aux.substring(index); index = url.indexOf('>'); if (index == -1) index = url.indexOf("\""); url = url.substring(0, index); break; } } connection = new URL(url).openConnection(); return processNewUri(connection); } catch (Exception e2) { } } return null; } | 885,216 |
1 | private String fetchCompareContent() throws IOException { URL url = new URL(compareTo); StringWriter sw = new StringWriter(); IOUtils.copy(url.openStream(), sw); return sw.getBuffer().toString(); } | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | 885,217 |
0 | public static void readProperties() throws IOException { URL url1 = cl.getResource("conf/soapuddi.config"); Properties props = new Properties(); if (url1 == null) throw new IOException("soapuddi.config not found"); props.load(url1.openStream()); className = props.getProperty("Class"); url = props.getProperty("URL"); user = props.getProperty("user"); password = props.getProperty("passwd"); operatorName = props.getProperty("operator"); authorisedName = props.getProperty("authorisedName"); isUpdated = true; } | @Test public void testHandleMessageInvalidSignature() throws Exception { KeyPair keyPair = MiscTestUtils.generateKeyPair(); DateTime notBefore = new DateTime(); DateTime notAfter = notBefore.plusYears(1); X509Certificate certificate = MiscTestUtils.generateCertificate(keyPair.getPublic(), "CN=Test", notBefore, notAfter, null, keyPair.getPrivate(), true, 0, null, null); ServletConfig mockServletConfig = EasyMock.createMock(ServletConfig.class); Map<String, String> httpHeaders = new HashMap<String, String>(); HttpSession mockHttpSession = EasyMock.createMock(HttpSession.class); HttpServletRequest mockServletRequest = EasyMock.createMock(HttpServletRequest.class); EasyMock.expect(mockServletConfig.getInitParameter("AuditService")).andStubReturn(null); EasyMock.expect(mockServletConfig.getInitParameter("AuditServiceClass")).andStubReturn(AuditTestService.class.getName()); EasyMock.expect(mockServletConfig.getInitParameter("SignatureService")).andStubReturn(null); EasyMock.expect(mockServletConfig.getInitParameter("SignatureServiceClass")).andStubReturn(SignatureTestService.class.getName()); EasyMock.expect(mockServletRequest.getRemoteAddr()).andStubReturn("remote-address"); MessageDigest messageDigest = MessageDigest.getInstance("SHA1"); byte[] document = "hello world".getBytes(); byte[] digestValue = messageDigest.digest(document); EasyMock.expect(mockHttpSession.getAttribute(SignatureDataMessageHandler.DIGEST_VALUE_SESSION_ATTRIBUTE)).andStubReturn(digestValue); EasyMock.expect(mockHttpSession.getAttribute(SignatureDataMessageHandler.DIGEST_ALGO_SESSION_ATTRIBUTE)).andStubReturn("SHA-1"); SignatureDataMessage message = new SignatureDataMessage(); message.certificateChain = new LinkedList<X509Certificate>(); message.certificateChain.add(certificate); Signature signature = Signature.getInstance("SHA1withRSA"); signature.initSign(keyPair.getPrivate()); signature.update("foobar-document".getBytes()); byte[] signatureValue = signature.sign(); message.signatureValue = signatureValue; EasyMock.replay(mockServletConfig, mockHttpSession, mockServletRequest); AppletServiceServlet.injectInitParams(mockServletConfig, this.testedInstance); this.testedInstance.init(mockServletConfig); try { this.testedInstance.handleMessage(message, httpHeaders, mockServletRequest, mockHttpSession); fail(); } catch (ServletException e) { LOG.debug("expected exception: " + e.getMessage()); EasyMock.verify(mockServletConfig, mockHttpSession, mockServletRequest); assertNull(SignatureTestService.getSignatureValue()); assertEquals("remote-address", AuditTestService.getAuditSignatureRemoteAddress()); assertEquals(certificate, AuditTestService.getAuditSignatureClientCertificate()); } } | 885,218 |
1 | private static void doCopyFile(File srcFile, File destFile, boolean preserveFileDate) throws IOException { if (destFile.exists() && destFile.isDirectory()) { throw new IOException("Destination '" + destFile + "' exists but is a directory"); } FileInputStream input = new FileInputStream(srcFile); try { FileOutputStream output = new FileOutputStream(destFile); try { IOUtils.copy(input, output); } finally { IOUtils.closeQuietly(output); } } finally { IOUtils.closeQuietly(input); } if (srcFile.length() != destFile.length()) { throw new IOException("Failed to copy full contents from '" + srcFile + "' to '" + destFile + "'"); } if (preserveFileDate) { destFile.setLastModified(srcFile.lastModified()); } } | public static void main(String[] args) { String host; int port; char[] passphrase; System.out.println("InstallCert - Install CA certificate to Java Keystore"); System.out.println("====================================================="); final BufferedReader reader = new BufferedReader(new InputStreamReader(System.in)); try { if ((args.length == 1) || (args.length == 2)) { String[] c = args[0].split(":"); host = c[0]; port = (c.length == 1) ? 443 : Integer.parseInt(c[1]); String p = (args.length == 1) ? "changeit" : args[1]; passphrase = p.toCharArray(); } else { String tmpStr; do { System.out.print("Enter hostname or IP address: "); tmpStr = StringUtils.defaultIfEmpty(reader.readLine(), null); } while (tmpStr == null); host = tmpStr; System.out.print("Enter port number [443]: "); tmpStr = StringUtils.defaultIfEmpty(reader.readLine(), null); port = tmpStr == null ? 443 : Integer.parseInt(tmpStr); System.out.print("Enter keystore password [changeit]: "); tmpStr = reader.readLine(); String p = "".equals(tmpStr) ? "changeit" : tmpStr; passphrase = p.toCharArray(); } char SEP = File.separatorChar; final File dir = new File(System.getProperty("java.home") + SEP + "lib" + SEP + "security"); final File file = new File(dir, "cacerts"); System.out.println("Loading KeyStore " + file + "..."); InputStream in = new FileInputStream(file); KeyStore ks = KeyStore.getInstance(KeyStore.getDefaultType()); ks.load(in, passphrase); in.close(); SSLContext context = SSLContext.getInstance("TLS"); TrustManagerFactory tmf = TrustManagerFactory.getInstance(TrustManagerFactory.getDefaultAlgorithm()); tmf.init(ks); X509TrustManager defaultTrustManager = (X509TrustManager) tmf.getTrustManagers()[0]; SavingTrustManager tm = new SavingTrustManager(defaultTrustManager); context.init(null, new TrustManager[] { tm }, null); SSLSocketFactory factory = context.getSocketFactory(); System.out.println("Opening connection to " + host + ":" + port + "..."); SSLSocket socket = (SSLSocket) factory.createSocket(host, port); socket.setSoTimeout(10000); try { System.out.println("Starting SSL handshake..."); socket.startHandshake(); socket.close(); System.out.println(); System.out.println("No errors, certificate is already trusted"); } catch (SSLException e) { System.out.println(); e.printStackTrace(System.out); } X509Certificate[] chain = tm.chain; if (chain == null) { System.out.println("Could not obtain server certificate chain"); return; } System.out.println(); System.out.println("Server sent " + chain.length + " certificate(s):"); System.out.println(); MessageDigest sha1 = MessageDigest.getInstance("SHA1"); MessageDigest md5 = MessageDigest.getInstance("MD5"); for (int i = 0; i < chain.length; i++) { X509Certificate cert = chain[i]; System.out.println(" " + (i + 1) + " Subject " + cert.getSubjectDN()); System.out.println(" Issuer " + cert.getIssuerDN()); sha1.update(cert.getEncoded()); System.out.println(" sha1 " + toHexString(sha1.digest())); md5.update(cert.getEncoded()); System.out.println(" md5 " + toHexString(md5.digest())); System.out.println(); } System.out.print("Enter certificate to add to trusted keystore or 'q' to quit [1]: "); String line = reader.readLine().trim(); int k = -1; try { k = (line.length() == 0) ? 0 : Integer.parseInt(line) - 1; } catch (NumberFormatException e) { } if (k < 0 || k >= chain.length) { System.out.println("KeyStore not changed"); } else { try { System.out.println("Creating keystore backup"); final SimpleDateFormat dateFormat = new SimpleDateFormat("yyyyMMddHHmmss"); final File backupFile = new File(dir, CACERTS_KEYSTORE + "." + dateFormat.format(new java.util.Date())); final FileInputStream fis = new FileInputStream(file); final FileOutputStream fos = new FileOutputStream(backupFile); IOUtils.copy(fis, fos); fis.close(); fos.close(); } catch (Exception e) { e.printStackTrace(); } System.out.println("Installing certificate..."); X509Certificate cert = chain[k]; String alias = host + "-" + (k + 1); ks.setCertificateEntry(alias, cert); OutputStream out = new FileOutputStream(file); ks.store(out, passphrase); out.close(); System.out.println(); System.out.println(cert); System.out.println(); System.out.println("Added certificate to keystore '" + file + "' using alias '" + alias + "'"); } } catch (Exception e) { System.out.println(); System.out.println("----------------------------------------------"); System.out.println("Problem occured during installing certificate:"); e.printStackTrace(); System.out.println("----------------------------------------------"); } System.out.println("Press Enter to finish..."); try { reader.readLine(); } catch (IOException e) { e.printStackTrace(); } } | 885,219 |
0 | public void write(File file) throws Exception { if (isInMemory()) { FileOutputStream fout = null; try { fout = new FileOutputStream(file); fout.write(get()); } finally { if (fout != null) { fout.close(); } } } else { File outputFile = getStoreLocation(); if (outputFile != null) { size = outputFile.length(); if (!outputFile.renameTo(file)) { BufferedInputStream in = null; BufferedOutputStream out = null; try { in = new BufferedInputStream(new FileInputStream(outputFile)); out = new BufferedOutputStream(new FileOutputStream(file)); IOUtils.copy(in, out); } finally { if (in != null) { try { in.close(); } catch (IOException e) { } } if (out != null) { try { out.close(); } catch (IOException e) { } } } } } else { throw new FileUploadException("Cannot write uploaded file to disk!"); } } } | public static boolean isInternetReachable() { try { URL url = new URL("http://code.google.com/p/ilias-userimport/downloads/list"); HttpURLConnection urlConnect = (HttpURLConnection) url.openConnection(); Object objData = urlConnect.getContent(); } catch (UnknownHostException e) { e.printStackTrace(); return false; } catch (IOException e) { e.printStackTrace(); return false; } return true; } | 885,220 |
0 | public static void copyFile(File src, File dst) throws IOException { BufferedInputStream is = new BufferedInputStream(new FileInputStream(src)); BufferedOutputStream os = new BufferedOutputStream(new FileOutputStream(dst)); byte[] buf = new byte[1024]; int count = 0; while ((count = is.read(buf, 0, 1024)) != -1) os.write(buf, 0, count); is.close(); os.close(); } | public String hash(String password) { MessageDigest digest = null; try { digest = MessageDigest.getInstance("SHA-256"); } catch (NoSuchAlgorithmException ex) { log.info("No sha-256 available"); try { digest = MessageDigest.getInstance("SHA-1"); } catch (NoSuchAlgorithmException e) { log.fatal("sha-1 is not available", e); throw new RuntimeException("Couldn't get a hash algorithm from Java"); } } try { digest.reset(); digest.update((salt + password).getBytes("UTF-8")); byte hash[] = digest.digest(); return new String(Base64.encodeBase64(hash, false)); } catch (Throwable t) { throw new RuntimeException("Couldn't hash password"); } } | 885,221 |
1 | @Override protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { resp.setContentType("image/png"); OutputStream outStream; outStream = resp.getOutputStream(); InputStream is; String name = req.getParameter("name"); if (name == null) { is = ImageServlet.class.getResourceAsStream("/com/actionbazaar/blank.png"); } else { ImageRecord imageRecord = imageBean.getFile(name); if (imageRecord != null) { is = new BufferedInputStream(new FileInputStream(imageRecord.getThumbnailFile())); } else { is = ImageServlet.class.getResourceAsStream("/com/actionbazaar/blank.png"); } } IOUtils.copy(is, outStream); outStream.close(); outStream.flush(); } | public static void copia(File nombreFuente, File nombreDestino) throws IOException { FileInputStream fis = new FileInputStream(nombreFuente); FileOutputStream fos = new FileOutputStream(nombreDestino); FileChannel canalFuente = fis.getChannel(); FileChannel canalDestino = fos.getChannel(); canalFuente.transferTo(0, canalFuente.size(), canalDestino); fis.close(); fos.close(); } | 885,222 |
1 | private static void main(String[] args) { try { File f = new File("test.txt"); if (f.exists()) { throw new IOException(f + " already exists. I don't want to overwrite it."); } StraightStreamReader in; char[] cbuf = new char[0x1000]; int read; int totRead; FileOutputStream out = new FileOutputStream(f); for (int i = 0x00; i < 0x100; i++) { out.write(i); } out.close(); in = new StraightStreamReader(new FileInputStream(f)); for (int i = 0x00; i < 0x100; i++) { read = in.read(); if (read != i) { System.err.println("Error: " + i + " read as " + read); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = in.read(cbuf); if (totRead != 0x100) { System.err.println("Simple buffered read did not read the full amount: 0x" + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 7)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); f.delete(); } catch (IOException x) { System.err.println(x.getMessage()); } } | private File copyFile(File file, String newName, File folder) { File newFile = null; if (!file.exists()) { System.out.println("File " + file + " does not exist"); return null; } if (file.isFile()) { BufferedOutputStream out = null; BufferedInputStream in = null; try { in = new BufferedInputStream(new FileInputStream(file)); newFile = new File(folder, newName); if (!newFile.exists()) { newFile.createNewFile(); } out = new BufferedOutputStream(new FileOutputStream(newFile)); int read; byte[] buffer = new byte[8192]; while ((read = in.read(buffer)) != -1) { out.write(buffer, 0, read); } updateTreeUI(); } catch (IOException ex) { Logger.getLogger(this.getClass().getName()).log(Level.SEVERE, null, ex); } finally { try { if (in != null) { in.close(); } if (out != null) { out.close(); } } catch (IOException ex) { Logger.getLogger(this.getClass().getName()).log(Level.SEVERE, null, ex); } } } else if (file.isDirectory()) { newFile = new File(folder, newName); if (!newFile.exists()) { newFile.mkdir(); } for (File f : file.listFiles()) { copyFile(f, f.getName(), newFile); } } return newFile; } | 885,223 |
1 | protected synchronized InputStream openURLConnection(StreamDataSetDescriptor dsd, Datum start, Datum end, StringBuffer additionalFormData) throws DasException { String[] tokens = dsd.getDataSetID().split("\\?|\\&"); String dataSetID = tokens[1]; try { String formData = createFormDataString(dataSetID, start, end, additionalFormData); if (dsd.isRestrictedAccess()) { key = server.getKey(""); if (key != null) { formData += "&key=" + URLEncoder.encode(key.toString(), "UTF-8"); } } if (redirect) { formData += "&redirect=1"; } URL serverURL = this.server.getURL(formData); this.lastRequestURL = String.valueOf(serverURL); DasLogger.getLogger(DasLogger.DATA_TRANSFER_LOG).info("opening " + serverURL.toString()); URLConnection urlConnection = serverURL.openConnection(); urlConnection.connect(); String contentType = urlConnection.getContentType(); if (!contentType.equalsIgnoreCase("application/octet-stream")) { BufferedReader bin = new BufferedReader(new InputStreamReader(urlConnection.getInputStream())); String line = bin.readLine(); String message = ""; while (line != null) { message = message.concat(line); line = bin.readLine(); } throw new DasIOException(message); } InputStream in = urlConnection.getInputStream(); if (isLegacyStream()) { return processLegacyStream(in); } else { throw new UnsupportedOperationException(); } } catch (IOException e) { throw new DasIOException(e); } } | protected void discoverRegistryEntries() { DataSourceRegistry registry = this; try { ClassLoader loader = DataSetURI.class.getClassLoader(); Enumeration<URL> urls; if (loader == null) { urls = ClassLoader.getSystemResources("META-INF/org.virbo.datasource.DataSourceFactory.extensions"); } else { urls = loader.getResources("META-INF/org.virbo.datasource.DataSourceFactory.extensions"); } while (urls.hasMoreElements()) { URL url = urls.nextElement(); BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); String s = reader.readLine(); while (s != null) { s = s.trim(); if (s.length() > 0) { String[] ss = s.split("\\s"); for (int i = 1; i < ss.length; i++) { if (ss[i].contains(".")) { System.err.println("META-INF/org.virbo.datasource.DataSourceFactory.extensions contains extension that contains period: "); System.err.println(ss[0] + " " + ss[i] + " in " + url); System.err.println("This sometimes happens when extension files are concatenated, so check that all are terminated by end-of-line"); System.err.println(""); throw new IllegalArgumentException("DataSourceFactory.extensions contains extension that contains period: " + url); } registry.registerExtension(ss[0], ss[i], null); } } s = reader.readLine(); } reader.close(); } if (loader == null) { urls = ClassLoader.getSystemResources("META-INF/org.virbo.datasource.DataSourceFactory.mimeTypes"); } else { urls = loader.getResources("META-INF/org.virbo.datasource.DataSourceFactory.mimeTypes"); } while (urls.hasMoreElements()) { URL url = urls.nextElement(); BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); String s = reader.readLine(); while (s != null) { s = s.trim(); if (s.length() > 0) { String[] ss = s.split("\\s"); for (int i = 1; i < ss.length; i++) { registry.registerMimeType(ss[0], ss[i]); } } s = reader.readLine(); } reader.close(); } if (loader == null) { urls = ClassLoader.getSystemResources("META-INF/org.virbo.datasource.DataSourceFormat.extensions"); } else { urls = loader.getResources("META-INF/org.virbo.datasource.DataSourceFormat.extensions"); } while (urls.hasMoreElements()) { URL url = urls.nextElement(); BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); String s = reader.readLine(); while (s != null) { s = s.trim(); if (s.length() > 0) { String[] ss = s.split("\\s"); for (int i = 1; i < ss.length; i++) { if (ss[i].contains(".")) { System.err.println("META-INF/org.virbo.datasource.DataSourceFormat.extensions contains extension that contains period: "); System.err.println(ss[0] + " " + ss[i] + " in " + url); System.err.println("This sometimes happens when extension files are concatenated, so check that all are terminated by end-of-line"); System.err.println(""); throw new IllegalArgumentException("DataSourceFactory.extensions contains extension that contains period: " + url); } registry.registerFormatter(ss[0], ss[i]); } } s = reader.readLine(); } reader.close(); } if (loader == null) { urls = ClassLoader.getSystemResources("META-INF/org.virbo.datasource.DataSourceEditorPanel.extensions"); } else { urls = loader.getResources("META-INF/org.virbo.datasource.DataSourceEditorPanel.extensions"); } while (urls.hasMoreElements()) { URL url = urls.nextElement(); BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); String s = reader.readLine(); while (s != null) { s = s.trim(); if (s.length() > 0) { String[] ss = s.split("\\s"); for (int i = 1; i < ss.length; i++) { if (ss[i].contains(".")) { System.err.println("META-INF/org.virbo.datasource.DataSourceEditorPanel.extensions contains extension that contains period: "); System.err.println(ss[0] + " " + ss[i] + " in " + url); System.err.println("This sometimes happens when extension files are concatenated, so check that all are terminated by end-of-line"); System.err.println(""); throw new IllegalArgumentException("DataSourceFactory.extensions contains extension that contains period: " + url); } registry.registerEditor(ss[0], ss[i]); } } s = reader.readLine(); } reader.close(); } if (loader == null) { urls = ClassLoader.getSystemResources("META-INF/org.virbo.datasource.DataSourceFormatEditorPanel.extensions"); } else { urls = loader.getResources("META-INF/org.virbo.datasource.DataSourceFormatEditorPanel.extensions"); } while (urls.hasMoreElements()) { URL url = urls.nextElement(); BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); String s = reader.readLine(); while (s != null) { s = s.trim(); if (s.length() > 0) { String[] ss = s.split("\\s"); for (int i = 1; i < ss.length; i++) { if (ss[i].contains(".")) { System.err.println("META-INF/org.virbo.datasource.DataSourceFormatEditorPanel.extensions contains extension that contains period: "); System.err.println(ss[0] + " " + ss[i] + " in " + url); System.err.println("This sometimes happens when extension files are concatenated, so check that all are terminated by end-of-line"); System.err.println(""); throw new IllegalArgumentException("DataSourceFactory.extensions contains extension that contains period: " + url); } registry.registerFormatEditor(ss[0], ss[i]); } } s = reader.readLine(); } reader.close(); } } catch (IOException e) { e.printStackTrace(); } } | 885,224 |
1 | public RawTableData(int selectedId) { selectedProjectId = selectedId; String urlString = dms_url + "/servlet/com.ufnasoft.dms.server.ServerGetProjectDocuments"; String rvalue = ""; String filename = dms_home + FS + "temp" + FS + username + "documents.xml"; try { String urldata = urlString + "?username=" + URLEncoder.encode(username, "UTF-8") + "&key=" + URLEncoder.encode(key, "UTF-8") + "&projectid=" + selectedProjectId + "&filename=" + URLEncoder.encode(username, "UTF-8") + "documents.xml"; ; DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance(); DocumentBuilder parser = factory.newDocumentBuilder(); URL u = new URL(urldata); DataInputStream is = new DataInputStream(u.openStream()); FileOutputStream os = new FileOutputStream(filename); int iBufSize = is.available(); byte inBuf[] = new byte[20000 * 1024]; int iNumRead; while ((iNumRead = is.read(inBuf, 0, iBufSize)) > 0) os.write(inBuf, 0, iNumRead); os.close(); is.close(); File f = new File(filename); InputStream inputstream = new FileInputStream(f); Document document = parser.parse(inputstream); NodeList nodelist = document.getElementsByTagName("doc"); int num = nodelist.getLength(); rawTableData = new String[num][11]; imageNames = new String[num]; for (int i = 0; i < num; i++) { rawTableData[i][0] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "did")); rawTableData[i][1] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "t")); rawTableData[i][2] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "f")); rawTableData[i][3] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "d")); rawTableData[i][4] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "l")); String firstname = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "fn")); String lastname = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "ln")); rawTableData[i][5] = firstname + " " + lastname; rawTableData[i][6] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "dln")); rawTableData[i][7] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "rsid")); rawTableData[i][8] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "img")); imageNames[i] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "img")); rawTableData[i][9] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "ucin")); rawTableData[i][10] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "dtid")); } } catch (MalformedURLException ex) { System.out.println(ex); } catch (ParserConfigurationException ex) { System.out.println(ex); } catch (NullPointerException e) { } catch (Exception ex) { System.out.println(ex); } } | public static void unZip(String unZipfileName, String outputDirectory) throws IOException, FileNotFoundException { FileOutputStream fileOut; File file; ZipEntry zipEntry; ZipInputStream zipIn = new ZipInputStream(new BufferedInputStream(new FileInputStream(unZipfileName)), encoder); while ((zipEntry = zipIn.getNextEntry()) != null) { file = new File(outputDirectory + File.separator + zipEntry.getName()); if (zipEntry.isDirectory()) { createDirectory(file.getPath(), ""); } else { File parent = file.getParentFile(); if (!parent.exists()) { createDirectory(parent.getPath(), ""); } fileOut = new FileOutputStream(file); int readedBytes; while ((readedBytes = zipIn.read(buf)) > 0) { fileOut.write(buf, 0, readedBytes); } fileOut.close(); } zipIn.closeEntry(); } } | 885,225 |
1 | private void executeScript(SQLiteDatabase sqlDatabase, InputStream input) { StringWriter writer = new StringWriter(); try { IOUtils.copy(input, writer); } catch (IOException e) { throw new ComixException("Could not read the database script", e); } String multipleSql = writer.toString(); String[] split = multipleSql.split("-- SCRIPT_SPLIT --"); for (String sql : split) { if (!sql.trim().equals("")) { sqlDatabase.execSQL(sql); } } } | private void copyFile(String file) { FileChannel inChannel = null; FileChannel outChannel = null; try { Date dt = new Date(); SimpleDateFormat df = new SimpleDateFormat("yyyyMMdd HHmmss "); File in = new File(file); String[] name = file.split("\\\\"); File out = new File(".\\xml_archiv\\" + df.format(dt) + name[name.length - 1]); inChannel = new FileInputStream(in).getChannel(); outChannel = new FileOutputStream(out).getChannel(); inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { System.err.println("Copy error!"); System.err.println("Error: " + e.getMessage()); } finally { if (inChannel != null) { try { inChannel.close(); } catch (IOException ex) { Logger.getLogger(ImportIntoDb.class.getName()).log(Level.SEVERE, null, ex); } } if (outChannel != null) { try { outChannel.close(); } catch (IOException ex) { Logger.getLogger(ImportIntoDb.class.getName()).log(Level.SEVERE, null, ex); } } } } | 885,226 |
1 | void IconmenuItem5_actionPerformed(ActionEvent e) { JFileChooser jFileChooser1 = new JFileChooser(); String separator = ""; if (getPath() != null && !getPath().equals("")) { jFileChooser1.setCurrentDirectory(new File(getPath())); jFileChooser1.setSelectedFile(new File(getPath())); } if (JFileChooser.APPROVE_OPTION == jFileChooser1.showOpenDialog(this.getFatherFrame())) { setPath(jFileChooser1.getSelectedFile().getPath()); separator = jFileChooser1.getSelectedFile().separator; File dirImg = new File("." + separator + "images"); if (!dirImg.exists()) { dirImg.mkdir(); } int index = getPath().lastIndexOf(separator); String imgName = getPath().substring(index); String newPath = dirImg + imgName; try { File inputFile = new File(getPath()); File outputFile = new File(newPath); if (!inputFile.getCanonicalPath().equals(outputFile.getCanonicalPath())) { FileInputStream in = new FileInputStream(inputFile); FileOutputStream out = new FileOutputStream(outputFile); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); } } catch (Exception ex) { ex.printStackTrace(); LogHandler.log(ex.getMessage(), Level.INFO, "LOG_MSG", isLoggingEnabled()); JOptionPane.showMessageDialog(null, ex.getMessage().substring(0, Math.min(ex.getMessage().length(), getFatherPanel().MAX_DIALOG_MSG_SZ)) + "-" + getClass(), "", JOptionPane.ERROR_MESSAGE); } setPath(newPath); if (getDefaultPath() == null || getDefaultPath().equals("")) { String msgString = "E' stata selezionata un'immagine da associare all'IconShape, ma non e' " + "stata selezionata ancora nessun'immagine di default. Imposto quella scelta anche come " + "immagine di default?"; if (JOptionPane.showConfirmDialog(null, msgString.substring(0, Math.min(msgString.length(), getFatherPanel().MAX_DIALOG_MSG_SZ)), "choose one", JOptionPane.YES_NO_OPTION) == JOptionPane.YES_OPTION) { setDefaultPath(newPath); createDefaultImage(); } } createImage(); } } | private static void processFile(StreamDriver driver, String sourceName) throws Exception { String destName = sourceName + ".xml"; File dest = new File(destName); if (dest.exists()) { throw new IllegalArgumentException("File '" + destName + "' already exists!"); } FileChannel sourceChannel = new FileInputStream(sourceName).getChannel(); try { MappedByteBuffer sourceByteBuffer = sourceChannel.map(FileChannel.MapMode.READ_ONLY, 0, sourceChannel.size()); CharsetDecoder decoder = Charset.forName("ISO-8859-15").newDecoder(); CharBuffer sourceBuffer = decoder.decode(sourceByteBuffer); driver.generateXmlDocument(sourceBuffer, new FileOutputStream(dest)); } finally { sourceChannel.close(); } } | 885,227 |
0 | private static String getServiceResponse(final String requestName, final Template template, final Map variables) { OutputStreamWriter outputWriter = null; try { final StringWriter writer = new StringWriter(); final VelocityContext context = new VelocityContext(variables); template.merge(context, writer); final String request = writer.toString(); final URLConnection urlConnection = new URL(SERVICE_URL).openConnection(); urlConnection.setUseCaches(false); urlConnection.setDoOutput(true); urlConnection.setRequestProperty("User-Agent", "Mozilla/5.0 (Windows; U; Windows NT 5.1; en-US; rv:1.9.2b4) Gecko/20091124 Firefox/3.6b4"); urlConnection.setRequestProperty("Accept", "text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8"); urlConnection.setRequestProperty("Accept-Language", "en-us,en;q=0.5"); urlConnection.setRequestProperty("Accept-Charset", "ISO-8859-1,utf-8;q=0.7,*;q=0.7"); urlConnection.setRequestProperty("Accept-Encoding", "gzip,deflate"); urlConnection.setRequestProperty("Keep-Alive", "115"); urlConnection.setRequestProperty("Connection", "keep-alive"); urlConnection.setRequestProperty("Content-Type", "text/xml; charset=utf-8"); urlConnection.setRequestProperty("Content-Length", "" + request.length()); urlConnection.setRequestProperty("SOAPAction", requestName); outputWriter = new OutputStreamWriter(urlConnection.getOutputStream(), "UTF-8"); outputWriter.write(request); outputWriter.flush(); final InputStream result = urlConnection.getInputStream(); return IOUtils.toString(result); } catch (Exception ex) { throw new RuntimeException(ex); } finally { if (outputWriter != null) { try { outputWriter.close(); } catch (IOException logOrIgnore) { } } } } | public void copyImage(String from, String to) { File inputFile = new File(from); File outputFile = new File(to); try { if (inputFile.canRead()) { FileInputStream in = new FileInputStream(inputFile); FileOutputStream out = new FileOutputStream(outputFile); byte[] buf = new byte[65536]; int c; while ((c = in.read(buf)) > 0) out.write(buf, 0, c); in.close(); out.close(); } } catch (IOException e) { e.printStackTrace(); } } | 885,228 |
0 | public Login authenticateClient() { Object o; String user, password; Vector<Login> clientLogins = ClientLoginsTableModel.getClientLogins(); Login login = null; try { socket.setSoTimeout(25000); objectOut.writeObject("JFRITZ SERVER 1.1"); objectOut.flush(); o = objectIn.readObject(); if (o instanceof String) { user = (String) o; objectOut.flush(); for (Login l : clientLogins) { if (l.getUser().equals(user)) { login = l; break; } } if (login != null) { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(login.getPassword().getBytes()); DESKeySpec desKeySpec = new DESKeySpec(md.digest()); SecretKeyFactory keyFactory = SecretKeyFactory.getInstance("DES"); SecretKey secretKey = keyFactory.generateSecret(desKeySpec); Cipher desCipher = Cipher.getInstance("DES/ECB/PKCS5Padding"); desCipher.init(Cipher.ENCRYPT_MODE, secretKey); byte[] dataKeySeed = new byte[32]; Random random = new Random(); random.nextBytes(dataKeySeed); md.reset(); md.update(dataKeySeed); dataKeySeed = md.digest(); SealedObject dataKeySeedSealed; dataKeySeedSealed = new SealedObject(dataKeySeed, desCipher); objectOut.writeObject(dataKeySeedSealed); objectOut.flush(); desKeySpec = new DESKeySpec(dataKeySeed); secretKey = keyFactory.generateSecret(desKeySpec); inCipher = Cipher.getInstance("DES/ECB/PKCS5Padding"); outCipher = Cipher.getInstance("DES/ECB/PKCS5Padding"); inCipher.init(Cipher.DECRYPT_MODE, secretKey); outCipher.init(Cipher.ENCRYPT_MODE, secretKey); SealedObject sealedObject = (SealedObject) objectIn.readObject(); o = sealedObject.getObject(inCipher); if (o instanceof String) { String response = (String) o; if (response.equals("OK")) { SealedObject ok_sealed = new SealedObject("OK", outCipher); objectOut.writeObject(ok_sealed); return login; } else { Debug.netMsg("Client sent false response to challenge!"); } } else { Debug.netMsg("Client sent false object as response to challenge!"); } } else { Debug.netMsg("client sent unkown username: " + user); } } } catch (IllegalBlockSizeException e) { Debug.netMsg("Wrong blocksize for sealed object!"); Debug.error(e.toString()); e.printStackTrace(); } catch (ClassNotFoundException e) { Debug.netMsg("received unrecognized object from client!"); Debug.error(e.toString()); e.printStackTrace(); } catch (NoSuchAlgorithmException e) { Debug.netMsg("MD5 Algorithm not present in this JVM!"); Debug.error(e.toString()); e.printStackTrace(); } catch (InvalidKeySpecException e) { Debug.netMsg("Error generating cipher, problems with key spec?"); Debug.error(e.toString()); e.printStackTrace(); } catch (InvalidKeyException e) { Debug.netMsg("Error genertating cipher, problems with key?"); Debug.error(e.toString()); e.printStackTrace(); } catch (NoSuchPaddingException e) { Debug.netMsg("Error generating cipher, problems with padding?"); Debug.error(e.toString()); e.printStackTrace(); } catch (IOException e) { Debug.netMsg("Error authenticating client!"); Debug.error(e.toString()); e.printStackTrace(); } catch (BadPaddingException e) { Debug.netMsg("Bad padding exception!"); Debug.error(e.toString()); e.printStackTrace(); } return null; } | private void displayDiffResults() throws IOException { File outFile = File.createTempFile("diff", ".htm"); outFile.deleteOnExit(); FileOutputStream outStream = new FileOutputStream(outFile); BufferedWriter out = new BufferedWriter(new OutputStreamWriter(outStream)); out.write("<html><head><title>LOC Differences</title>\n" + SCRIPT + "</head>\n" + "<body bgcolor='#ffffff'>\n" + "<div onMouseOver=\"window.defaultStatus='Metrics'\">\n"); if (addedTable.length() > 0) { out.write("<table border><tr><th>Files Added:</th>" + "<th>Add</th><th>Type</th></tr>"); out.write(addedTable.toString()); out.write("</table><br><br>"); } if (modifiedTable.length() > 0) { out.write("<table border><tr><th>Files Modified:</th>" + "<th>Base</th><th>Del</th><th>Mod</th><th>Add</th>" + "<th>Total</th><th>Type</th></tr>"); out.write(modifiedTable.toString()); out.write("</table><br><br>"); } if (deletedTable.length() > 0) { out.write("<table border><tr><th>Files Deleted:</th>" + "<th>Del</th><th>Type</th></tr>"); out.write(deletedTable.toString()); out.write("</table><br><br>"); } out.write("<table name=METRICS BORDER>\n"); if (modifiedTable.length() > 0 || deletedTable.length() > 0) { out.write("<tr><td>Base: </td><td>"); out.write(Long.toString(base)); out.write("</td></tr>\n<tr><td>Deleted: </td><td>"); out.write(Long.toString(deleted)); out.write("</td></tr>\n<tr><td>Modified: </td><td>"); out.write(Long.toString(modified)); out.write("</td></tr>\n<tr><td>Added: </td><td>"); out.write(Long.toString(added)); out.write("</td></tr>\n<tr><td>New & Changed: </td><td>"); out.write(Long.toString(added + modified)); out.write("</td></tr>\n"); } out.write("<tr><td>Total: </td><td>"); out.write(Long.toString(total)); out.write("</td></tr>\n</table></div>"); redlinesOut.close(); out.flush(); InputStream redlines = new FileInputStream(redlinesTempFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = redlines.read(buffer)) != -1) outStream.write(buffer, 0, bytesRead); outStream.write("</BODY></HTML>".getBytes()); outStream.close(); Browser.launch(outFile.toURL().toString()); } | 885,229 |
1 | public void insertStringInFile(String file, String textToInsert, long fromByte, long toByte) throws Exception { String tmpFile = file + ".tmp"; BufferedInputStream in = null; BufferedOutputStream out = null; long byteCount = 0; try { in = new BufferedInputStream(new FileInputStream(new File(file))); out = new BufferedOutputStream(new FileOutputStream(tmpFile)); long size = fromByte; byte[] buf = null; if (size == 0) { } else { buf = new byte[(int) size]; int length = -1; if ((length = in.read(buf)) != -1) { out.write(buf, 0, length); byteCount = byteCount + length; } else { String msg = "Failed to read the first '" + size + "' bytes of file '" + file + "'. This might be a programming error."; logger.warning(msg); throw new Exception(msg); } } buf = textToInsert.getBytes(); int length = buf.length; out.write(buf, 0, length); byteCount = byteCount + length; long skipLength = toByte - fromByte; long skippedBytes = in.skip(skipLength); if (skippedBytes == -1) { } else { buf = new byte[4096]; length = -1; while ((length = in.read(buf)) != -1) { out.write(buf, 0, length); byteCount = byteCount + length; } } in.close(); in = null; out.close(); out = null; File fileToDelete = new File(file); boolean wasDeleted = fileToDelete.delete(); if (!wasDeleted) { String msg = "Failed to delete the original file '" + file + "' to replace it with the modified file after text insertion."; logger.warning(msg); throw new Exception(msg); } File fileToRename = new File(tmpFile); boolean wasRenamed = fileToRename.renameTo(fileToDelete); if (!wasRenamed) { String msg = "Failed to rename tmp file '" + tmpFile + "' to the name of the original file '" + file + "'"; logger.warning(msg); throw new Exception(msg); } } catch (Exception e) { logger.log(Level.WARNING, "Failed to read/write file '" + file + "'.", e); throw e; } finally { if (in != null) { try { in.close(); } catch (IOException e) { logger.log(Level.FINEST, "Ignoring error closing input file '" + file + "'.", e); } } if (out != null) { try { out.close(); } catch (IOException e) { logger.log(Level.FINEST, "Ignoring error closing output file '" + tmpFile + "'.", e); } } } } | public static boolean copy(File from, File to) { if (from.isDirectory()) { for (String name : Arrays.asList(from.list())) { if (!copy(from, to, name)) { LogUtils.info("Failed to copy " + name + " from " + from + " to " + to, null); return false; } } } else { try { FileInputStream is = new FileInputStream(from); FileChannel ifc = is.getChannel(); FileOutputStream os = makeFile(to); if (USE_NIO) { FileChannel ofc = os.getChannel(); ofc.transferFrom(ifc, 0, from.length()); } else { pipe(is, os, false); } is.close(); os.close(); } catch (IOException ex) { LogUtils.warning("Failed to copy " + from + " to " + to, ex); return false; } } long time = from.lastModified(); setLastModified(to, time); long newtime = to.lastModified(); if (newtime != time) { LogUtils.info("Failed to set timestamp for file " + to + ": tried " + new Date(time) + ", have " + new Date(newtime), null); to.setLastModified(time); long morenewtime = to.lastModified(); return false; } return time == newtime; } | 885,230 |
0 | private void pushResource(String peerId, String communityId, String resourceFilePath, List<String> attachmentFilePaths) throws IOException { String urlString = "http://" + peerId + "/upload"; HttpURLConnection uploadConnection = null; DataOutputStream connOutput = null; FileInputStream fileInput = null; String lineEnd = "\r\n"; String twoHyphens = "--"; String boundary = "232404jkg4220957934FW"; int bytesRead, bytesAvailable, bufferSize; byte[] buffer; int maxBufferSize = 1 * 1024 * 1024; try { File resourceFile = new File(resourceFilePath); if (!resourceFile.exists()) { LOG.error("JTellaAdapter: Resource file could not be found for push: " + resourceFilePath); return; } List<File> attachments = new ArrayList<File>(); for (String attachmentPath : attachmentFilePaths) { File attachFile = new File(attachmentPath); if (!attachFile.exists()) { LOG.error("JTellaAdapter: Attachment file could not be found for push: " + attachmentPath); return; } attachments.add(attachFile); } LOG.debug("JTellaAdapter: Initiating push to: " + urlString); URL url = new URL(urlString); uploadConnection = (HttpURLConnection) url.openConnection(); uploadConnection.setDoInput(true); uploadConnection.setDoOutput(true); uploadConnection.setUseCaches(false); uploadConnection.setRequestMethod("POST"); uploadConnection.setRequestProperty("Content-Type", "multipart/form-data;boundary=" + boundary); uploadConnection.setRequestProperty("Connection", "Keep-Alive"); uploadConnection.setRequestProperty("User-Agent", "UP2P"); uploadConnection.setRequestProperty("Accept", "[star]/[star]"); connOutput = new DataOutputStream(uploadConnection.getOutputStream()); connOutput.writeBytes(twoHyphens + boundary + lineEnd); connOutput.writeBytes("Content-Disposition: form-data; name=\"up2p:community\"" + lineEnd + lineEnd); connOutput.writeBytes(communityId + lineEnd); connOutput.writeBytes(twoHyphens + boundary + lineEnd); connOutput.writeBytes("Content-Disposition: form-data; name=\"up2p:pushupload\"" + lineEnd + lineEnd + "true" + lineEnd); connOutput.writeBytes(twoHyphens + boundary + lineEnd); boolean fileWriteComplete = false; boolean resourceFileWritten = false; File nextFile = null; while (!fileWriteComplete) { if (!resourceFileWritten) { nextFile = resourceFile; } else { nextFile = attachments.remove(0); } LOG.debug("JTellaAdapter: PUSHing file: " + nextFile.getAbsolutePath()); connOutput.writeBytes("Content-Disposition: form-data; name=\"up2p:filename\";" + " filename=\"" + nextFile.getName() + "\"" + lineEnd); connOutput.writeBytes(lineEnd); fileInput = new FileInputStream(nextFile); bytesAvailable = fileInput.available(); bufferSize = Math.min(bytesAvailable, maxBufferSize); buffer = new byte[bufferSize]; bytesRead = fileInput.read(buffer, 0, bufferSize); while (bytesRead > 0) { connOutput.write(buffer, 0, bufferSize); bytesAvailable = fileInput.available(); bufferSize = Math.min(bytesAvailable, maxBufferSize); bytesRead = fileInput.read(buffer, 0, bufferSize); } connOutput.writeBytes(lineEnd); if (attachments.isEmpty()) { connOutput.writeBytes(twoHyphens + boundary + twoHyphens + lineEnd); } else { connOutput.writeBytes(twoHyphens + boundary + lineEnd); } resourceFileWritten = true; if (attachments.isEmpty()) { fileWriteComplete = true; } } BufferedReader inStream = new BufferedReader(new InputStreamReader(uploadConnection.getInputStream())); while (inStream.readLine() != null) ; inStream.close(); LOG.debug("JTellaAdapter: Push upload was succesful."); } catch (MalformedURLException ex) { LOG.error("JTellaAdapter: pushResource Malformed URL: " + ex); throw new IOException("pushResource failed for URL: " + urlString); } catch (IOException ioe) { LOG.error("JTellaAdapter: pushResource IOException: " + ioe); throw new IOException("pushResource failed for URL: " + urlString); } finally { try { if (fileInput != null) { fileInput.close(); } if (connOutput != null) { connOutput.flush(); } if (connOutput != null) { connOutput.close(); } if (uploadConnection != null) { uploadConnection.disconnect(); } } catch (IOException e) { LOG.error("JTellaAdapter: pushResource failed to close connection streams."); } } } | public void downloadFtpFile(SynchrnServerVO synchrnServerVO, String fileNm) throws Exception { FTPClient ftpClient = new FTPClient(); ftpClient.setControlEncoding("euc-kr"); if (!EgovWebUtil.isIPAddress(synchrnServerVO.getServerIp())) { throw new RuntimeException("IP is needed. (" + synchrnServerVO.getServerIp() + ")"); } InetAddress host = InetAddress.getByName(synchrnServerVO.getServerIp()); ftpClient.connect(host, Integer.parseInt(synchrnServerVO.getServerPort())); ftpClient.login(synchrnServerVO.getFtpId(), synchrnServerVO.getFtpPassword()); ftpClient.changeWorkingDirectory(synchrnServerVO.getSynchrnLc()); File downFile = new File(EgovWebUtil.filePathBlackList(synchrnServerVO.getFilePath() + fileNm)); OutputStream outputStream = null; try { outputStream = new FileOutputStream(downFile); ftpClient.retrieveFile(fileNm, outputStream); } catch (Exception e) { System.out.println(e); } finally { if (outputStream != null) outputStream.close(); } ftpClient.logout(); } | 885,231 |
0 | public static String scramble(String text) { try { MessageDigest md = MessageDigest.getInstance("SHA-1"); md.update(text.getBytes("UTF-8")); StringBuffer sb = new StringBuffer(); for (byte b : md.digest()) sb.append(Integer.toString(b & 0xFF, 16)); return sb.toString(); } catch (UnsupportedEncodingException e) { return null; } catch (NoSuchAlgorithmException e) { return null; } } | private InputStream classpathStream(String path) { InputStream in = null; URL url = getClass().getClassLoader().getResource(path); if (url != null) { try { in = url.openStream(); } catch (IOException e) { e.printStackTrace(); } } return in; } | 885,232 |
0 | public static int my_rename(String source, String dest) { logger.debug("RENAME " + source + " to " + dest); if (source == null || dest == null) return -1; { logger.debug("\tMoving file across file systems."); FileChannel srcChannel = null; FileChannel dstChannel = null; FileLock lock = null; try { srcChannel = new FileInputStream(source).getChannel(); dstChannel = new FileOutputStream(dest).getChannel(); lock = dstChannel.lock(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); dstChannel.force(true); } catch (IOException e) { logger.fatal("Error while copying file '" + source + "' to file '" + dest + "'. " + e.getMessage(), e); return common_h.ERROR; } finally { try { lock.release(); } catch (Throwable t) { logger.fatal("Error releasing file lock - " + dest); } try { srcChannel.close(); } catch (Throwable t) { } try { dstChannel.close(); } catch (Throwable t) { } } } return common_h.OK; } | private InputStream callService(String text) { InputStream in = null; try { URL url = new URL(SERVLET_URL); URLConnection conn = url.openConnection(); HttpURLConnection httpConn = (HttpURLConnection) conn; httpConn.setRequestMethod("POST"); httpConn.setDoInput(true); httpConn.setDoOutput(true); httpConn.connect(); DataOutputStream dataStream = new DataOutputStream(conn.getOutputStream()); dataStream.writeBytes(text); dataStream.flush(); dataStream.close(); int responseCode = httpConn.getResponseCode(); if (responseCode == HttpURLConnection.HTTP_OK) { in = httpConn.getInputStream(); } } catch (Exception ex) { ex.printStackTrace(); } return in; } | 885,233 |
0 | public static byte[] readUrl(URL url) { BufferedInputStream in = null; try { class Part { byte[] partData; int len; } in = new BufferedInputStream(url.openStream()); LinkedList<Part> parts = new LinkedList<Part>(); int len = 1; while (len > 0) { byte[] data = new byte[1024]; len = in.read(data); if (len > 0) { Part part = new Part(); part.partData = data; part.len = len; parts.add(part); } } int length = 0; for (Part part : parts) length += part.len; byte[] result = new byte[length]; int pos = 0; for (Part part : parts) { System.arraycopy(part.partData, 0, result, pos, part.len); pos += part.len; } return result; } catch (IOException e) { return null; } finally { if (in != null) { try { in.close(); } catch (IOException e) { } } } } | @Test public void testPersistor() throws Exception { PreparedStatement ps; ps = connection.prepareStatement("delete from privatadresse"); ps.executeUpdate(); ps.close(); ps = connection.prepareStatement("delete from adresse"); ps.executeUpdate(); ps.close(); ps = connection.prepareStatement("delete from person"); ps.executeUpdate(); ps.close(); Persistor p; Adresse csd = new LieferAdresse(); csd.setStrasse("Amalienstrasse 68"); modificationTracker.addNewParticipant(csd); Person markus = new Person(); markus.setName("markus"); modificationTracker.addNewParticipant(markus); markus.getPrivatAdressen().add(csd); Person martin = new Person(); martin.setName("martin"); modificationTracker.addNewParticipant(martin); p = new Persistor(getSchemaMapping(), idGenerator, modificationTracker); p.persist(); Adresse bia = new LieferAdresse(); modificationTracker.addNewParticipant(bia); bia.setStrasse("dr. boehringer gasse"); markus.getAdressen().add(bia); bia.setPerson(martin); markus.setContactPerson(martin); p = new Persistor(getSchemaMapping(), idGenerator, modificationTracker); try { p.persist(); connection.commit(); } catch (Exception e) { connection.rollback(); throw e; } } | 885,234 |
1 | public void readEntry(String name, InputStream input) throws Exception { File file = new File(this.directory, name); OutputStream output = new BufferedOutputStream(FileUtils.openOutputStream(file)); try { org.apache.commons.io.IOUtils.copy(input, output); } finally { output.close(); } } | public static void main(String[] argv) { if (1 < argv.length) { File[] sources = Source(argv[0]); if (null != sources) { for (File src : sources) { File[] targets = Target(src, argv); if (null != targets) { final long srclen = src.length(); try { FileChannel source = new FileInputStream(src).getChannel(); try { for (File tgt : targets) { FileChannel target = new FileOutputStream(tgt).getChannel(); try { source.transferTo(0L, srclen, target); } finally { target.close(); } System.out.printf("Updated %s\n", tgt.getPath()); File[] deletes = Delete(src, tgt); if (null != deletes) { for (File del : deletes) { if (SVN) { if (SvnDelete(del)) System.out.printf("Deleted %s\n", del.getPath()); else System.out.printf("Failed to delete %s\n", del.getPath()); } else if (del.delete()) System.out.printf("Deleted %s\n", del.getPath()); else System.out.printf("Failed to delete %s\n", del.getPath()); } } if (SVN) SvnAdd(tgt); } } finally { source.close(); } } catch (Exception exc) { exc.printStackTrace(); System.exit(1); } } } System.exit(0); } else { System.err.printf("Source file(s) not found in '%s'\n", argv[0]); System.exit(1); } } else { usage(); System.exit(1); } } | 885,235 |
1 | public void run() { FileInputStream src; FileOutputStream dest; try { dest = new FileOutputStream(srcName); } catch (FileNotFoundException e) { e.printStackTrace(); return; } FileChannel destC = dest.getChannel(); FileChannel srcC; ByteBuffer buf = ByteBuffer.allocateDirect(BUFFER_SIZE); try { int fileNo = 0; while (true) { int i = 1; String destName = srcName + "_" + fileNo; src = new FileInputStream(destName); srcC = src.getChannel(); while ((i > 0)) { i = srcC.read(buf); buf.flip(); destC.write(buf); buf.compact(); } srcC.close(); src.close(); fileNo++; } } catch (IOException e1) { e1.printStackTrace(); return; } } | public static void copyFile(File source, File destination, long copyLength) throws IOException { if (!source.exists()) { String message = "File " + source + " does not exist"; throw new FileNotFoundException(message); } if (destination.getParentFile() != null && !destination.getParentFile().exists()) { forceMkdir(destination.getParentFile()); } if (destination.exists() && !destination.canWrite()) { String message = "Unable to open file " + destination + " for writing."; throw new IOException(message); } if (source.getCanonicalPath().equals(destination.getCanonicalPath())) { String message = "Unable to write file " + source + " on itself."; throw new IOException(message); } if (copyLength == 0) { truncateFile(destination, 0); } FileInputStream input = null; FileOutputStream output = null; try { input = new FileInputStream(source); output = new FileOutputStream(destination); long lengthLeft = copyLength; byte[] buffer = new byte[(int) Math.min(BUFFER_LENGTH, lengthLeft + 1)]; int read; while (lengthLeft > 0) { read = input.read(buffer); if (read == -1) { break; } lengthLeft -= read; output.write(buffer, 0, read); } output.flush(); output.getFD().sync(); } finally { IOUtil.closeQuietly(input); IOUtil.closeQuietly(output); } destination.setLastModified(source.lastModified()); } | 885,236 |
1 | public void run() { try { URL url = new URL("http://pokedev.org/time.php"); BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream())); StringTokenizer s = new StringTokenizer(in.readLine()); m_day = Integer.parseInt(s.nextToken()); m_hour = Integer.parseInt(s.nextToken()); m_minutes = Integer.parseInt(s.nextToken()); in.close(); } catch (Exception e) { System.out.println("ERROR: Cannot reach time server, reverting to local time"); Calendar cal = Calendar.getInstance(); m_hour = cal.get(Calendar.HOUR_OF_DAY); m_minutes = 0; m_day = 0; } while (m_isRunning) { m_minutes = m_minutes == 59 ? 0 : m_minutes + 1; if (m_minutes == 0) { if (m_hour == 23) { incrementDay(); m_hour = 0; } else { m_hour += 1; } } m_hour = m_hour == 23 ? 0 : m_hour + 1; if (System.currentTimeMillis() - m_lastWeatherUpdate >= 3600000) { generateWeather(); m_lastWeatherUpdate = System.currentTimeMillis(); } try { Thread.sleep(60000); } catch (Exception e) { } } System.out.println("INFO: Time Service stopped"); } | public static Collection<Class<? extends Page>> loadPages() throws IOException { ClassLoader ldr = Thread.currentThread().getContextClassLoader(); Collection<Class<? extends Page>> pages = new ArrayList<Class<? extends Page>>(); Enumeration<URL> e = ldr.getResources("META-INF/services/" + Page.class.getName()); while (e.hasMoreElements()) { URL url = e.nextElement(); InputStream is = url.openStream(); ; try { BufferedReader r = new BufferedReader(new InputStreamReader(is, "UTF-8")); while (true) { String line = r.readLine(); if (line == null) break; int comment = line.indexOf('#'); if (comment >= 0) line = line.substring(0, comment); String name = line.trim(); if (name.length() == 0) continue; Class<?> clz = Class.forName(name, true, ldr); Class<? extends Page> impl = clz.asSubclass(Page.class); pages.add(impl); } } catch (Exception ex) { System.out.println(ex); } finally { try { is.close(); } catch (Exception ex) { } } } return pages; } | 885,237 |
0 | public static void copyFile(File src, File dst) throws IOException { InputStream in = new FileInputStream(src); OutputStream out = new FileOutputStream(dst); byte[] buf = new byte[1024]; int len; while ((len = in.read(buf)) > 0) out.write(buf, 0, len); in.close(); out.close(); } | public void loadFromURLPath(String type, URL urlPath, HashMap parentAttributes) throws IOException { this.urlPath = urlPath; this.type = type; JmeBinaryReader jbr = new JmeBinaryReader(); setProperties(jbr, parentAttributes); InputStream loaderInput = urlPath.openStream(); if (type.equals("xml")) { XMLtoBinary xtb = new XMLtoBinary(); ByteArrayOutputStream BO = new ByteArrayOutputStream(); xtb.sendXMLtoBinary(loaderInput, BO); loaderInput = new ByteArrayInputStream(BO.toByteArray()); } else if (!type.equals("binary")) throw new IOException("Unknown LoaderNode flag: " + type); jbr.loadBinaryFormat(this, loaderInput); } | 885,238 |
0 | @NotNull public Set<Class<?>> in(Package pack) { String packageName = pack.getName(); String packageOnly = pack.getName(); final boolean recursive = true; Set<Class<?>> classes = new LinkedHashSet<Class<?>>(); String packageDirName = packageOnly.replace('.', '/'); Enumeration<URL> dirs; try { dirs = Thread.currentThread().getContextClassLoader().getResources(packageDirName); } catch (IOException e) { throw new PackageScanFailedException("Could not read from package directory: " + packageDirName, e); } while (dirs.hasMoreElements()) { URL url = dirs.nextElement(); String protocol = url.getProtocol(); if ("file".equals(protocol)) { try { findClassesInDirPackage(packageOnly, URLDecoder.decode(url.getFile(), "UTF-8"), recursive, classes); } catch (UnsupportedEncodingException e) { throw new PackageScanFailedException("Could not read from file: " + url, e); } } else if ("jar".equals(protocol)) { JarFile jar; try { jar = ((JarURLConnection) url.openConnection()).getJarFile(); } catch (IOException e) { throw new PackageScanFailedException("Could not read from jar url: " + url, e); } Enumeration<JarEntry> entries = jar.entries(); while (entries.hasMoreElements()) { JarEntry entry = entries.nextElement(); String name = entry.getName(); if (name.charAt(0) == '/') { name = name.substring(1); } if (name.startsWith(packageDirName)) { int idx = name.lastIndexOf('/'); if (idx != -1) { packageName = name.substring(0, idx).replace('/', '.'); } if ((idx != -1) || recursive) { if (name.endsWith(".class") && !entry.isDirectory()) { String className = name.substring(packageName.length() + 1, name.length() - 6); add(packageName, classes, className); } } } } } } return classes; } | public static String hash(String arg) throws NoSuchAlgorithmException { String input = arg; String output; MessageDigest md = MessageDigest.getInstance("SHA"); md.update(input.getBytes()); output = Hex.encodeHexString(md.digest()); return output; } | 885,239 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public void onMessage(Message message) { LOG.debug("onMessage"); DownloadMessage downloadMessage; try { downloadMessage = new DownloadMessage(message); } catch (JMSException e) { LOG.error("JMS error: " + e.getMessage(), e); return; } String caName = downloadMessage.getCaName(); boolean update = downloadMessage.isUpdate(); LOG.debug("issuer: " + caName); CertificateAuthorityEntity certificateAuthority = this.certificateAuthorityDAO.findCertificateAuthority(caName); if (null == certificateAuthority) { LOG.error("unknown certificate authority: " + caName); return; } if (!update && Status.PROCESSING != certificateAuthority.getStatus()) { LOG.debug("CA status not marked for processing"); return; } String crlUrl = certificateAuthority.getCrlUrl(); if (null == crlUrl) { LOG.warn("No CRL url for CA " + certificateAuthority.getName()); certificateAuthority.setStatus(Status.NONE); return; } NetworkConfig networkConfig = this.configurationDAO.getNetworkConfig(); HttpClient httpClient = new HttpClient(); if (null != networkConfig) { httpClient.getHostConfiguration().setProxy(networkConfig.getProxyHost(), networkConfig.getProxyPort()); } HttpClientParams httpClientParams = httpClient.getParams(); httpClientParams.setParameter("http.socket.timeout", new Integer(1000 * 20)); LOG.debug("downloading CRL from: " + crlUrl); GetMethod getMethod = new GetMethod(crlUrl); getMethod.addRequestHeader("User-Agent", "jTrust CRL Client"); int statusCode; try { statusCode = httpClient.executeMethod(getMethod); } catch (Exception e) { downloadFailed(caName, crlUrl); throw new RuntimeException(); } if (HttpURLConnection.HTTP_OK != statusCode) { LOG.debug("HTTP status code: " + statusCode); downloadFailed(caName, crlUrl); throw new RuntimeException(); } String crlFilePath; File crlFile = null; try { crlFile = File.createTempFile("crl-", ".der"); InputStream crlInputStream = getMethod.getResponseBodyAsStream(); OutputStream crlOutputStream = new FileOutputStream(crlFile); IOUtils.copy(crlInputStream, crlOutputStream); IOUtils.closeQuietly(crlInputStream); IOUtils.closeQuietly(crlOutputStream); crlFilePath = crlFile.getAbsolutePath(); LOG.debug("temp CRL file: " + crlFilePath); } catch (IOException e) { downloadFailed(caName, crlUrl); if (null != crlFile) { crlFile.delete(); } throw new RuntimeException(e); } try { this.notificationService.notifyHarvester(caName, crlFilePath, update); } catch (JMSException e) { crlFile.delete(); throw new RuntimeException(e); } } | 885,240 |
0 | public synchronized void receive(MessageEvent e) { switch(e.message.getType()) { case MessageTypes.QUIT: activeSessions--; break; case MessageTypes.SHUTDOWN_SERVER: activeSessions--; if (Options.password.trim().equals("")) { System.err.println("No default password set. Shutdown not allowed."); break; } if (e.message.get("pwhash") == null) { System.err.println("Shutdown message without password received. Shutdown not allowed."); break; } try { java.security.MessageDigest hash = java.security.MessageDigest.getInstance("SHA-1"); hash.update(Options.password.getBytes("UTF-8")); if (!java.security.MessageDigest.isEqual(hash.digest(), (byte[]) e.message.get("pwhash"))) { System.err.println("Wrong shutdown password. Shutdown not allowed."); break; } else { System.out.println("Valid shutdown password received."); } } catch (java.security.NoSuchAlgorithmException ex) { System.err.println("Password hash algorithm SHA-1 not supported by runtime."); break; } catch (UnsupportedEncodingException ex) { System.err.println("Password character encoding not supported."); break; } catch (Exception ex) { System.err.println("Unhandled exception occured. Shutdown aborted. Details:"); ex.printStackTrace(System.err); break; } if (activeSessions == 0) tStop(); else System.err.println("there are other active sessions - shutdown failed"); break; default: } } | protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { String zOntoJsonApiUrl = getInitParameter("zOntoJsonApiServletUrl"); URL url = new URL(zOntoJsonApiUrl + "?" + req.getQueryString()); resp.setContentType("text/html"); InputStreamReader bf = new InputStreamReader(url.openStream()); BufferedReader bbf = new BufferedReader(bf); String response = ""; String line = bbf.readLine(); PrintWriter out = resp.getWriter(); while (line != null) { response += line; line = bbf.readLine(); } out.print(response); out.close(); } | 885,241 |
1 | public String read(String url) throws IOException { URL myurl = new URL(url); BufferedReader in = new BufferedReader(new InputStreamReader(myurl.openStream())); StringBuffer sb = new StringBuffer(); String inputLine; while ((inputLine = in.readLine()) != null) sb.append(inputLine); in.close(); return sb.toString(); } | public int getUrl() { try { final URL url = new URL(this.url); conn = url.openConnection(); if (cookies != null) { conn.setRequestProperty("Cookie", cookies); } InputStreamReader inputstream = new InputStreamReader(conn.getInputStream(), charset); charset = inputstream.getEncoding(); BufferedReader input = new BufferedReader(inputstream); String line; while ((line = input.readLine()) != null) { content += line + "\n"; } return 0; } catch (MalformedURLException e) { return 1; } catch (IOException e2) { return 2; } } | 885,242 |
0 | public static IFigure render(IDiagram diagram) { Diagram realDiagram; try { realDiagram = ((Diagram.IDiagramImpl) diagram).getDiagram(); } catch (ClassCastException x) { throw new IllegalArgumentException("invalid diagram parameter"); } ScrollingGraphicalViewer viewer = new ScrollingGraphicalViewer(); viewer.createControl(RMBenchPlugin.getDefault().getWorkbench().getActiveWorkbenchWindow().getShell()); viewer.setRootEditPart(new ScalableFreeformRootEditPart()); viewer.setEditPartFactory(new CustomEditPartFactory()); viewer.setContents(realDiagram); AbstractGraphicalEditPart aep = (AbstractGraphicalEditPart) viewer.getRootEditPart(); refresh(aep); IFigure root = ((AbstractGraphicalEditPart) viewer.getRootEditPart()).getFigure(); setPreferedSize(root); return root; } | private Reader getReader(String uri, Query query) throws SourceException { if (OntoramaConfig.DEBUG) { System.out.println("uri = " + uri); } InputStreamReader reader = null; try { System.out.println("class UrlSource, uri = " + uri); URL url = new URL(uri); URLConnection connection = url.openConnection(); reader = new InputStreamReader(connection.getInputStream()); } catch (MalformedURLException urlExc) { throw new SourceException("Url " + uri + " specified for this ontology source is not well formed, error: " + urlExc.getMessage()); } catch (IOException ioExc) { throw new SourceException("Couldn't read input data source for " + uri + ", error: " + ioExc.getMessage()); } return reader; } | 885,243 |
1 | public static boolean copyFile(String sourceFileName, String destFileName) { if (sourceFileName == null || destFileName == null) return false; if (sourceFileName.equals(destFileName)) return false; try { java.io.FileInputStream in = new java.io.FileInputStream(sourceFileName); java.io.FileOutputStream out = new java.io.FileOutputStream(destFileName); try { byte[] buf = new byte[31000]; int read = in.read(buf); while (read > -1) { out.write(buf, 0, read); read = in.read(buf); } } finally { in.close(); out.close(); } } catch (Exception e) { System.out.println(e.toString()); return false; } return true; } | protected void truncate(File file) { LogLog.debug("Compression of file: " + file.getAbsolutePath() + " started."); if (FileUtils.isFileOlder(file, ManagementFactory.getRuntimeMXBean().getStartTime())) { File backupRoot = new File(getBackupDir()); if (!backupRoot.exists() && !backupRoot.mkdirs()) { throw new AppenderInitializationError("Can't create backup dir for backup storage"); } SimpleDateFormat df; try { df = new SimpleDateFormat(getBackupDateFormat()); } catch (Exception e) { throw new AppenderInitializationError("Invalid date formate for backup files: " + getBackupDateFormat(), e); } String date = df.format(new Date(file.lastModified())); File zipFile = new File(backupRoot, file.getName() + "." + date + ".zip"); ZipOutputStream zos = null; FileInputStream fis = null; try { zos = new ZipOutputStream(new FileOutputStream(zipFile)); ZipEntry entry = new ZipEntry(file.getName()); entry.setMethod(ZipEntry.DEFLATED); entry.setCrc(FileUtils.checksumCRC32(file)); zos.putNextEntry(entry); fis = FileUtils.openInputStream(file); byte[] buffer = new byte[1024]; int readed; while ((readed = fis.read(buffer)) != -1) { zos.write(buffer, 0, readed); } } catch (Exception e) { throw new AppenderInitializationError("Can't create zip file", e); } finally { if (zos != null) { try { zos.close(); } catch (IOException e) { LogLog.warn("Can't close zip file", e); } } if (fis != null) { try { fis.close(); } catch (IOException e) { LogLog.warn("Can't close zipped file", e); } } } if (!file.delete()) { throw new AppenderInitializationError("Can't delete old log file " + file.getAbsolutePath()); } } } | 885,244 |
1 | public void actionPerformed(java.awt.event.ActionEvent e) { JFileChooser fc = new JFileChooser(); fc.addChoosableFileFilter(new ImageFilter()); fc.setAccessory(new ImagePreview(fc)); int returnVal = fc.showDialog(AdministracionResorces.this, Messages.getString("gui.AdministracionResorces.8")); if (returnVal == JFileChooser.APPROVE_OPTION) { File file = fc.getSelectedFile(); String rutaGlobal = System.getProperty("user.dir") + "/" + rutaDatos + "imagenes/" + file.getName(); String rutaRelativa = rutaDatos + "imagenes/" + file.getName(); try { FileInputStream fis = new FileInputStream(file); FileOutputStream fos = new FileOutputStream(rutaGlobal, true); FileChannel canalFuente = fis.getChannel(); FileChannel canalDestino = fos.getChannel(); canalFuente.transferTo(0, canalFuente.size(), canalDestino); fis.close(); fos.close(); imagen.setImagenURL(rutaRelativa); gui.getEntrenamientoIzquierdaLabel().setIcon(gui.getProcesadorDatos().escalaImageIcon(((Imagen) gui.getComboBoxImagenesIzquierda().getSelectedItem()).getImagenURL())); gui.getEntrenamientoDerechaLabel().setIcon(gui.getProcesadorDatos().escalaImageIcon(((Imagen) gui.getComboBoxImagenesDerecha().getSelectedItem()).getImagenURL())); buttonImagen.setIcon(new ImageIcon("data/icons/view_sidetreeOK.png")); labelImagenPreview.setIcon(gui.getProcesadorDatos().escalaImageIcon(imagen.getImagenURL())); } catch (IOException ex) { ex.printStackTrace(); } } else { } } | public static void copyFile(File source, String target) throws FileNotFoundException, IOException { File fout = new File(target); fout.mkdirs(); fout.delete(); fout = new File(target); FileChannel in = new FileInputStream(source).getChannel(); FileChannel out = new FileOutputStream(target).getChannel(); in.transferTo(0, in.size(), out); in.close(); out.close(); } | 885,245 |
0 | public String drive() { logger.info("\n"); logger.info("==========================================================="); logger.info("========== Start drive method ============================="); logger.info("==========================================================="); logger.entering(cl, "drive"); xstream = new XStream(new JsonHierarchicalStreamDriver()); xstream.setMode(XStream.NO_REFERENCES); xstream.alias("AuditDiffFacade", AuditDiffFacade.class); File auditSchemaFile = null; File auditSchemaXsdFile = null; try { if (configFile == null) { logger.severe("Request Failed: configFile is null"); return null; } else { if (configFile.getAuditSchemaFile() != null) { logger.info("auditSchemaFile=" + configFile.getAuditSchemaFile()); logger.info("auditSchemaXsdFile=" + configFile.getAuditSchemaXsdFile()); logger.info("plnXpathFile=" + configFile.getPlnXpathFile()); logger.info("auditSchemaFileDir=" + configFile.getAuditSchemaFileDir()); logger.info("auditReportFile=" + configFile.getAuditReportFile()); logger.info("auditReportXsdFile=" + configFile.getAuditReportXsdFile()); } else { logger.severe("Request Failed: auditSchemaFile is null"); return null; } } File test = new File(configFile.getAuditSchemaFileDir() + File.separator + "temp.xml"); auditSchemaFile = new File(configFile.getAuditSchemaFile()); if (!auditSchemaFile.exists() || auditSchemaFile.length() == 0L) { logger.severe("Request Failed: the audit schema file does not exist or empty"); return null; } auditSchemaXsdFile = null; if (configFile.getAuditSchemaXsdFile() != null) { auditSchemaXsdFile = new File(configFile.getAuditSchemaXsdFile()); } else { logger.severe("Request Failed: the audit schema xsd file is null"); return null; } if (!auditSchemaXsdFile.exists() || auditSchemaXsdFile.length() == 0L) { logger.severe("Request Failed: the audit schema xsd file does not exist or empty"); return null; } SchemaFactory factory = SchemaFactory.newInstance(XMLConstants.W3C_XML_SCHEMA_NS_URI); Schema schema = factory.newSchema(auditSchemaXsdFile); Validator validator = schema.newValidator(); Source source = new StreamSource(auditSchemaFile); validator.validate(source); } catch (SAXException e) { logger.warning("SAXException caught trying to validate input Schema Files: "); e.printStackTrace(); } catch (IOException e) { logger.warning("IOException caught trying to read input Schema File: "); e.printStackTrace(); } String xPathFile = null; if (configFile.getPlnXpathFile() != null) { xPathFile = configFile.getPlnXpathFile(); logger.info("Attempting to retrieve xpaths from file: '" + xPathFile + "'"); XpathUtility.readFile(xPathFile); } else { logger.severe("Configuration file does not have a value for the Xpath Filename"); return null; } Properties xpathProps = XpathUtility.getXpathsProps(); if (xpathProps == null) { logger.severe("No Xpaths could be extracted from file: '" + xPathFile + "' - xpath properties object is null"); return null; } if (xpathProps.isEmpty()) { logger.severe("No Xpaths could be extracted from file: '" + xPathFile + "' - xpath properties object is empty"); return null; } logger.info(xpathProps.size() + " xpaths retrieved."); for (String key : xpathProps.stringPropertyNames()) { logger.info("Key=" + key + " Value=" + xpathProps.getProperty(key)); } logger.info("\n"); logger.info("==========================================================="); logger.info("========== Process XML Schema File BEGIN =================="); logger.info("==========================================================="); SchemaSAXReader sax = new SchemaSAXReader(); ArrayList<String> key_matches = new ArrayList<String>(sax.parseDocument(auditSchemaFile, xpathProps)); logger.info("Check Input xpath hash against xpaths found in Schema."); Comparison comp_keys = new Comparison(); ArrayList<String> in_xpath_not_in_schema = new ArrayList<String>(comp_keys.keys_not_in_both_hashes(xpathProps, Utility.arraylist_to_map(key_matches, "key_matches"), "xpath Properties", "hm_key_matches")); if (in_xpath_not_in_schema.size() > 0) { logger.severe("All XPaths in Input xpath Properties list were not found in Schema."); logger.severe("Xpaths in xpath Properties list missing from schema file:" + xstream.toXML(in_xpath_not_in_schema)); logger.severe("Quitting."); return null; } Map<String, Map> schema_audit_hashbox = sax.get_audit_hashbox(); logger.info("schema_audit_hashbox\n" + xstream.toXML(schema_audit_hashbox)); Map<String, Map> schema_network_hashbox = sax.get_net_hashbox(); logger.info("schema_network_hashbox\n" + xstream.toXML(schema_network_hashbox)); Map<String, Map> schema_host_hashbox = sax.get_host_hashbox(); Map<String, Map> schema_au_hashbox = sax.get_au_hashbox(); logger.info("schema_au_hashbox\n" + xstream.toXML(schema_au_hashbox)); Hasherator hr = new Hasherator(); Set<String> s_host_hb_additions = new HashSet<String>(); s_host_hb_additions.add("/SSP/network/@network_id"); schema_host_hashbox = hr.copy_hashbox_entries(schema_network_hashbox, schema_host_hashbox, s_host_hb_additions); logger.info("schema_host_hashbox(after adding network name)\n" + xstream.toXML(schema_host_hashbox)); Map<String, String> transforms_s_au_hb = new HashMap<String, String>(); transforms_s_au_hb.put("/SSP/archivalUnits/au/auCapabilities/storageRequired/@max_size", "s_gigabytes_to_string_bytes_unformatted()"); schema_au_hashbox = hr.convert_hashbox_vals(schema_au_hashbox, transforms_s_au_hb); Map<String, String> transforms_s_host_hb = new HashMap<String, String>(); transforms_s_host_hb.put("/SSP/hosts/host/hostCapabilities/storageAvailable/@max_size", "s_gigabytes_to_string_bytes_unformatted()"); schema_host_hashbox = hr.convert_hashbox_vals(schema_host_hashbox, transforms_s_host_hb); logger.info("schema_host_hashbox(after transformations)\n" + xstream.toXML(schema_host_hashbox)); logger.info("\n"); logger.info("========== Process Schema END ============================"); logger.info("\n"); logger.info("========== Database Operations ============================"); MYSQLWorkPlnHostSummaryDAO daowphs = new MYSQLWorkPlnHostSummaryDAO(); daowphs.drop(); daowphs.create(); daowphs.updateTimestamp(); CachedRowSet rs_q0_N = daowphs.query_0_N(); double d_space_total = DBUtil.get_single_db_double_value(rs_q0_N, "net_sum_repo_size"); double d_space_used = DBUtil.get_single_db_double_value(rs_q0_N, "net_sum_used_space"); double d_space_free = d_space_total - d_space_used; double d_avg_uptime = DBUtil.get_single_db_double_value(rs_q0_N, "net_avg_uptime"); long space_total = (long) d_space_total; long space_used = (long) d_space_used; long space_free = space_total - space_used; String f_space_total = Utility.l_bytes_to_other_units_formatted(space_total, 3, "T"); String f_space_used = Utility.l_bytes_to_other_units_formatted(space_used, 3, "G"); String f_space_free = Utility.l_bytes_to_other_units_formatted(space_free, 3, "T"); String f_space_free2 = Utility.l_bytes_to_other_units_formatted(space_free, 3, null); logger.info("d_space_total: " + d_space_total + "\n" + "d_space_used: " + d_space_used + "\n" + "space_total: " + space_total + "\n" + "space_used: " + space_used + "\n" + "space_free: " + space_free + "\n\n" + "Double.toString( d_space_total ): " + Double.toString(d_space_total) + "\n\n" + "f_space_total: " + f_space_total + "\n" + "f_space_used: " + f_space_used + "\n" + "f_space_free: " + f_space_free + "\n" + "f_space_free2: " + f_space_free2); rprtCnst = new ReportData(); logger.info("\n"); logger.info("========== Load Report Constants from Calculations ==========="); rprtCnst.addKV("REPORT_HOSTS_TOTAL_DISKSPACE", f_space_total); rprtCnst.addKV("REPORT_HOSTS_TOTAL_DISKSPACE_USED", f_space_used); rprtCnst.addKV("REPORT_HOSTS_TOTAL_DISKSPACE_FREE", f_space_free); rprtCnst.addKV("REPORT_HOSTS_MEAN_UPTIME", Utility.ms_to_dd_hh_mm_ss_formatted((long) d_avg_uptime)); logger.info("r=\n" + rprtCnst.toString()); logger.info("\n"); logger.info("========== Load Report Constants from ConfigFile ============="); rprtCnst.addKV("REPORT_FILENAME_SCHEMA_FILENAME", configFile.getAuditSchemaFile()); rprtCnst.addKV("REPORT_FILENAME_SCHEMA_FILE_XSD_FILENAME", configFile.getAuditSchemaXsdFile()); rprtCnst.addKV("REPORT_FILENAME_XML_DIFF_FILENAME", configFile.getAuditReportFile()); rprtCnst.addKV("REPORT_FILENAME_XML_DIFF_FILE_XSD_FILENAME", configFile.getAuditReportXsdFile()); logger.info("\n"); logger.info("========== Load Report Constants from Hashboxes =============="); Set auditHBKeySet = hr.getMapKeyset(schema_audit_hashbox, "schema_audit_hashbox"); String audit_id = hr.singleKeysetEntryToString(auditHBKeySet); logger.info("audit_id: " + audit_id); Set networkHBKeySet = hr.getMapKeyset(schema_network_hashbox, "schema_network_hashbox"); String network_id = hr.singleKeysetEntryToString(networkHBKeySet); logger.info("network_id: " + network_id); rprtCnst.addKV("REPORT_AUDIT_ID", audit_id); rprtCnst.addKV("REPORT_AUDIT_REPORT_EMAIL", hr.extractSingleValueFromHashbox(schema_audit_hashbox, "schema_audit_hashbox", audit_id, "/SSP/audit/auditReportEmail")); rprtCnst.addKV("REPORT_AUDIT_INTERVAL", hr.extractSingleValueFromHashbox(schema_audit_hashbox, "schema_audit_hashbox", audit_id, "/SSP/audit/auditReportInterval/@maxDays")); rprtCnst.addKV("REPORT_SCHEMA_VERSION", hr.extractSingleValueFromHashbox(schema_audit_hashbox, "schema_audit_hashbox", audit_id, "/SSP/audit/schemaVersion")); rprtCnst.addKV("REPORT_CLASSIFICATION_GEOGRAPHIC_SUMMARY_SCHEME", hr.extractSingleValueFromHashbox(schema_audit_hashbox, "schema_audit_hashbox", audit_id, "/SSP/audit/geographicSummaryScheme")); rprtCnst.addKV("REPORT_CLASSIFICATION_SUBJECT_SUMMARY_SCHEME", hr.extractSingleValueFromHashbox(schema_audit_hashbox, "schema_audit_hashbox", audit_id, "/SSP/audit/subjectSummaryScheme")); rprtCnst.addKV("REPORT_CLASSIFICATION_OWNER_INSTITUTION_SUMMARY_SCHEME", hr.extractSingleValueFromHashbox(schema_audit_hashbox, "schema_audit_hashbox", audit_id, "/SSP/audit/ownerInstSummaryScheme")); rprtCnst.addKV("REPORT_NETWORK_ID", network_id); rprtCnst.addKV("REPORT_NETWORK_ADMIN_EMAIL", hr.extractSingleValueFromHashbox(schema_network_hashbox, "schema_network_hashbox", network_id, "/SSP/network/networkIdentity/accessBase/@adminEmail")); rprtCnst.addKV("REPORT_GEOGRAPHIC_CODING", hr.extractSingleValueFromHashbox(schema_network_hashbox, "schema_network_hashbox", network_id, "/SSP/network/networkIdentity/geographicCoding")); logger.info("\n"); logger.info("==========================================================="); logger.info("========== Process Network Data BEGIN======================"); logger.info("==========================================================="); Set<String> tableSet0 = reportAuOverviewFacade.findAllTables(); String reportAuOverviewTable = "report_au_overview"; int n_tabs = 0; if (tableSet0 != null && !tableSet0.isEmpty()) { logger.fine("Table List N=" + tableSet0.size()); for (String tableName : tableSet0) { n_tabs++; if (tableName.equalsIgnoreCase(reportAuOverviewTable)) { logger.fine(n_tabs + " " + tableName + " <--"); } else { logger.fine(n_tabs + " " + tableName); } } } else { logger.fine("No tables found in DB."); } if (!tableSet0.contains(reportAuOverviewTable)) { logger.info("Database does not contain table '" + reportAuOverviewTable + "'"); } List<ReportAuOverview> repAuOvTabAllData = null; repAuOvTabAllData = reportAuOverviewFacade.findAll(); if (repAuOvTabAllData != null && !(repAuOvTabAllData.isEmpty())) { logger.fine("\n" + reportAuOverviewTable + " table has " + repAuOvTabAllData.size() + " rows."); int n_rows = 0; for (ReportAuOverview row : repAuOvTabAllData) { n_rows++; logger.fine(n_rows + " " + row.toString()); } } else { logger.fine(reportAuOverviewTable + " is null, empty, or nonexistent."); } logger.fine("report_au_overview Table xstream Dump:\n" + xstream.toXML(repAuOvTabAllData)); logger.fine("\n"); logger.fine("Iterate over repAuOvTabAllData 2"); Iterator it = repAuOvTabAllData.iterator(); int n_el = 0; while (it.hasNext()) { ++n_el; String el = it.next().toString(); logger.fine(n_el + ". " + el); } Class aClass = edu.harvard.iq.safe.saasystem.entities.ReportAuOverview.class; String reportAuOverviewTableName = reportAuOverviewFacade.getTableName(); logger.fine("\n"); logger.fine("EntityManager Tests"); logger.fine("Table: " + reportAuOverviewTableName); logger.fine("\n"); logger.fine("Schema: " + reportAuOverviewFacade.getSchema()); logger.fine("\n"); Set columnList = reportAuOverviewFacade.getColumnList(reportAuOverviewFacade.getTableName()); logger.fine("Columns (fields) in table '" + reportAuOverviewTableName + "' (N=" + columnList.size() + ")"); Set<String> colList = new HashSet(); Iterator colNames = columnList.iterator(); int n_el2 = 0; while (colNames.hasNext()) { ++n_el2; String el = colNames.next().toString(); logger.fine(n_el2 + ". " + el); colList.add(el); } logger.fine(colList.size() + " entries in Set 'colList' "); logger.info("========== Query 'au_overview_table'============="); MySQLAuOverviewDAO daoao = new MySQLAuOverviewDAO(); CachedRowSet rs_q1_A = daoao.query_q1_A(); int[] au_table_rc = DBUtil.get_rs_dims(rs_q1_A); logger.info("Au Table Query ResultSet has " + au_table_rc[0] + " rows and " + au_table_rc[1] + " columns."); rprtCnst.addKV("REPORT_N_AUS_IN_NETWORK", Integer.toString(au_table_rc[0])); logger.info("========== Create 'network_au_hashbox' =========="); Map<String, Map> network_au_hashbox = new TreeMap<String, Map>(DBUtil.rs_to_hashbox(rs_q1_A, null, "au_id")); logger.info("network_au_hashbox before transformations\n" + xstream.toXML(network_au_hashbox)); Map<String, String> transforms_n_au_hb = new HashMap<String, String>(); transforms_n_au_hb.put("last_s_crawl_end", "ms_to_decimal_days_elapsed()"); transforms_n_au_hb.put("last_s_poll_end", "ms_to_decimal_days_elapsed()"); transforms_n_au_hb.put("crawl_duration", "ms_to_decimal_days()"); network_au_hashbox = hr.convert_hashbox_vals(network_au_hashbox, transforms_n_au_hb); Map<String, String> auNVerifiedRegions = reportAuOverviewFacade.getAuNVerifiedRegions(); logger.fine("auNVerifiedRegions\n" + xstream.toXML(auNVerifiedRegions)); network_au_hashbox = hr.addNewInnerHashEntriesToHashbox(network_au_hashbox, auNVerifiedRegions, "au_n_verified_regions"); logger.info("network_au_hashbox after Transformations and Addition of 'au_n_verified_regions'" + xstream.toXML(network_au_hashbox)); logger.info("========== Compare AUs BEGIN =============================="); ArrayList<String> al_aus_in_schema_not_in_network = new ArrayList<String>(comp_keys.keys_not_in_both_hashes(schema_au_hashbox, network_au_hashbox, "schema_aus", "network_aus")); Map<String, String> h_aus_in_schema_not_in_network = hr.get_names_from_id_list(schema_au_hashbox, al_aus_in_schema_not_in_network, "/SSP/archivalUnits/au/auIdentity/name"); rprtCnst.addKV("REPORT_N_AUS_IN_SCHEMA_NOT_IN_NETWORK", Integer.toString(al_aus_in_schema_not_in_network.size())); rprtCnst.set_h_aus_in_schema_not_in_network(h_aus_in_schema_not_in_network); MYSQLReportAusInSchemaNotInNetworkDAO daoraisnin = new MYSQLReportAusInSchemaNotInNetworkDAO(); daoraisnin.create(); daoraisnin.update(h_aus_in_schema_not_in_network); ArrayList<String> al_aus_in_network_not_in_schema = new ArrayList<String>(comp_keys.keys_not_in_both_hashes(network_au_hashbox, schema_au_hashbox, "network_aus", "schema_aus")); Utility.print_arraylist(al_aus_in_network_not_in_schema, "aus in_network_not_in_schema"); Map<String, String> h_aus_in_network_not_in_schema = hr.get_names_from_id_list(network_au_hashbox, al_aus_in_network_not_in_schema, "au_name"); rprtCnst.addKV("REPORT_N_AUS_IN_NETWORK_NOT_IN_SCHEMA", Integer.toString(al_aus_in_network_not_in_schema.size())); rprtCnst.set_h_aus_in_network_not_in_schema(h_aus_in_network_not_in_schema); MYSQLReportAusInNetworkNotInSchemaDAO daorainnis = new MYSQLReportAusInNetworkNotInSchemaDAO(); daorainnis.create(); daorainnis.update(h_aus_in_network_not_in_schema); Comparison comp_au = new Comparison(schema_au_hashbox, "Schema_AU", network_au_hashbox, "Network_AU", XpathUtility.getXpathToDbColumnMap(), XpathUtility.getXpathToCompOpMap()); comp_au.init(); logger.info("Attempting to create DB table 'lockss_audit.audit_results_au'"); MYSQLAuditResultsAuDAO daoara = new MYSQLAuditResultsAuDAO(); daoara.create(); String results_table_au = "audit_results_au"; String sql_vals_au_schema = comp_au.iterate_hbs_au(daoara, results_table_au, "au", h_aus_in_network_not_in_schema); CachedRowSet rs_RA2 = daoara.query_q1_RA(); String n_aus_not_verified = DBUtil.get_single_count_from_rs(rs_RA2); rprtCnst.addKV("REPORT_N_AUS_NOT_VERIFIED", DBUtil.get_single_count_from_rs(rs_RA2)); logger.info("\nInstantiating Result Class from main()"); DiffResult result = new DiffResult(); Map au_comp_host = result.get_result_hash("au"); logger.info("========== Compare AUs END ================================"); logger.info("========== Process Network Host Table ====================="); logger.info("========== Query 'lockss_box_table' and ========="); logger.info("================ 'repository_space_table' =======\n"); MySQLLockssBoxRepositorySpaceDAO daolbrs = new MySQLLockssBoxRepositorySpaceDAO(); CachedRowSet rs_q1_H = daolbrs.query_q1_H(); int[] host_table_rc = DBUtil.get_rs_dims(rs_q1_H); logger.info("Host Table Query ResultSet has " + host_table_rc[0] + " rows and " + host_table_rc[1] + " columns."); rprtCnst.addKV("REPORT_N_HOSTS_IN_NETWORK", Integer.toString(host_table_rc[0])); Long numberOfMemberHosts; if (StringUtils.isNotBlank(saasConfigurationRegistry.getSaasConfigProperties().getProperty("saas.ip.fromlockssxml"))) { numberOfMemberHosts = Long.parseLong(Integer.toString(saasConfigurationRegistry.getSaasConfigProperties().getProperty("saas.ip.fromlockssxml").split(",").length)); } else { if (StringUtils.isNotBlank(saasConfigurationRegistry.getSaasAuditConfigProperties().getProperty("saas.targetIp"))) { numberOfMemberHosts = Long.parseLong(Integer.toString(saasConfigurationRegistry.getSaasAuditConfigProperties().getProperty("saas.targetIp").split(",").length)); } else { numberOfMemberHosts = 0L; } } rprtCnst.addKV("REPORT_N_HOSTS_IN_NETWORK_2", Long.toString(numberOfMemberHosts)); Long numberOfReachableHosts; numberOfReachableHosts = lockssBoxFacade.getTotalHosts(); rprtCnst.addKV("REPORT_N_HOSTS_IN_NETWORK_REACHABLE", Long.toString(numberOfReachableHosts)); Map<String, Map> network_host_hashbox = new TreeMap<String, Map>(DBUtil.rs_to_hashbox(rs_q1_H, null, "ip_address")); logger.info("network_host_hashbox before transformations\n" + xstream.toXML(network_host_hashbox)); Map<String, String> transforms_n_host_hb = new HashMap<String, String>(); transforms_n_host_hb.put("repo_size", "SciToStr2()"); transforms_n_host_hb.put("used_space", "SciToStr2()"); network_host_hashbox = hr.convert_hashbox_vals(network_host_hashbox, transforms_n_host_hb); logger.info("network_host_hashbox(after transformations)\n" + xstream.toXML(network_host_hashbox)); Map<String, String> network_host_hb_sel_used_space = hr.join_hash_pk_to_inner_hash_value(network_host_hashbox, "used_space"); Map<String, String> schema_host_hb_sel_size = hr.join_hash_pk_to_inner_hash_value(schema_host_hashbox, "/SSP/hosts/host/hostCapabilities/storageAvailable/@max_size"); logger.info("\n========== Process Network END ==========================="); logger.info("========== Compare Key Sets (IDs)=========================="); Set<String> sa_hb_keys = hr.gen_hash_keyset(schema_au_hashbox, "schema_au_hashbox"); hr.set_hash_keyset(sa_hb_keys, "s_au_hb"); Set<String> sh_hb_keys = hr.gen_hash_keyset(schema_host_hashbox, "schema_host_hashbox"); hr.set_hash_keyset(sh_hb_keys, "s_h_hb"); Set<String> na_hb_keys = hr.gen_hash_keyset(network_au_hashbox, "network_au_hashbox"); hr.set_hash_keyset(na_hb_keys, "n_au_hb"); Set<String> nh_hb_keys = hr.gen_hash_keyset(network_host_hashbox, "network_host_hashbox"); hr.set_hash_keyset(nh_hb_keys, "n_h_hb"); Set<String> aus_in_schema_not_in_network = new TreeSet<String>(hr.get_hash_keyset("s_au_hb")); aus_in_schema_not_in_network.removeAll(hr.get_hash_keyset("n_au_hb")); Set<String> aus_in_network_not_in_schema = new TreeSet<String>(hr.get_hash_keyset("n_au_hb")); aus_in_network_not_in_schema.removeAll(hr.get_hash_keyset("s_au_hb")); Set<String> symmetricDiff = new HashSet<String>(hr.get_hash_keyset("s_au_hb")); symmetricDiff.addAll(hr.get_hash_keyset("n_au_hb")); Set<String> tmp = new HashSet<String>(hr.get_hash_keyset("s_au_hb")); tmp.retainAll(hr.get_hash_keyset("n_au_hb")); symmetricDiff.removeAll(tmp); Set<String> hosts_in_network_not_in_schema = new TreeSet<String>(hr.get_hash_keyset("n_h_hb")); hosts_in_network_not_in_schema.removeAll(hr.get_hash_keyset("s_h_hb")); Set<String> hosts_in_schema_not_in_network = new TreeSet<String>(hr.get_hash_keyset("s_h_hb")); hosts_in_schema_not_in_network.removeAll(hr.get_hash_keyset("n_h_hb")); ArrayList<String> al_hosts_in_schema_not_in_network = new ArrayList<String>(comp_keys.keys_not_in_both_hashes(schema_host_hashbox, network_host_hashbox, "schema_hosts", "network_hosts")); Map<String, String> h_hosts_in_schema_not_in_network = hr.get_names_from_id_list(schema_host_hashbox, al_hosts_in_schema_not_in_network, "/SSP/hosts/host/hostIdentity/name"); rprtCnst.addKV("REPORT_N_HOSTS_IN_SCHEMA_NOT_IN_NETWORK", Integer.toString(al_hosts_in_schema_not_in_network.size())); rprtCnst.set_h_hosts_in_schema_not_in_network(h_hosts_in_schema_not_in_network); MYSQLReportHostsInSchemaNotInNetworkDAO daorhisnin = new MYSQLReportHostsInSchemaNotInNetworkDAO(); daorhisnin.create(); daorhisnin.update(h_hosts_in_schema_not_in_network); ArrayList<String> al_hosts_in_network_not_in_schema = new ArrayList<String>(comp_keys.keys_not_in_both_hashes(network_host_hashbox, schema_host_hashbox, "network_hosts", "schema_hosts")); Map<String, String> h_hosts_in_network_not_in_schema = hr.get_names_from_id_list(network_host_hashbox, al_hosts_in_network_not_in_schema, "host_name"); rprtCnst.addKV("REPORT_N_HOSTS_IN_NETWORK_NOT_IN_SCHEMA", Integer.toString(al_hosts_in_network_not_in_schema.size())); rprtCnst.set_h_hosts_in_network_not_in_schema(h_hosts_in_network_not_in_schema); MYSQLReportHostsInNetworkNotInSchemaDAO rhinnis = new MYSQLReportHostsInNetworkNotInSchemaDAO(); rhinnis.create(); rhinnis.update(h_hosts_in_network_not_in_schema); logger.info("========== Compare Hosts BEGIN ============================"); Comparison comp_host = new Comparison(schema_host_hashbox, "Schema_Host", network_host_hashbox, "Network_Host", XpathUtility.getXpathToDbColumnMap(), XpathUtility.getXpathToCompOpMap()); comp_host.init(); MYSQLAuditResultsHostDAO daoarh = new MYSQLAuditResultsHostDAO(); daoarh.create(); String sql_vals_host_schema = comp_host.iterate_hbs_host(daoarh, "audit_results_host", "host", h_hosts_in_network_not_in_schema); CachedRowSet rs_RH = daoarh.query_q1_RH(); String n_hosts_not_meeting_storage = DBUtil.get_single_count_from_rs(rs_RH); rprtCnst.addKV("REPORT_N_HOSTS_NOT_MEETING_STORAGE", n_hosts_not_meeting_storage); logger.info("Calling result.get_result_hash( \"host\" ) from main()"); Map host_comp_hash = result.get_result_hash("host"); Map au_comp_hash2 = result.get_result_hash("au"); logger.info("========== Compare Hosts END =============================="); Map<String, String> map_host_ip_to_host_name = hr.make_id_hash(schema_host_hashbox, "/SSP/hosts/host/hostIdentity/name"); rprtCnst.addKV("REPORT_N_HOSTS_IN_SCHEMA", Integer.toString(map_host_ip_to_host_name.size())); String[] host_ip_list = hr.hash_keys_to_array(schema_host_hashbox); String[][] col2 = Utility.add_column_to_array1(map_host_ip_to_host_name.values().toArray(new String[0]), host_ip_list, null); Map<String, String> map_au_key_string_to_au_name = hr.make_id_hash(schema_au_hashbox, "/SSP/archivalUnits/au/auIdentity/name"); logger.info("Length map_au_key_string_to_au_name.values().toArray(new String[0]: " + map_au_key_string_to_au_name.values().toArray(new String[0]).length); rprtCnst.addKV("REPORT_N_AUS_IN_SCHEMA", Integer.toString(map_au_key_string_to_au_name.size())); MySQLLockssBoxArchivalUnitStatusDAO daolbaus = new MySQLLockssBoxArchivalUnitStatusDAO(); int[] rc = daolbaus.getResultSetDimensions(); int n_rs_rows = rc[0]; int n_rs_cols = rc[1]; logger.info("\n" + n_rs_rows + " rows (Host-AU's). " + n_rs_cols + " columns."); rprtCnst.addKV("REPORT_N_HOST_AUS_IN_NETWORK", Integer.toString(n_rs_rows)); logger.info("================== Query 'audit_results_host' Table =========="); CachedRowSet NNonCompliantAUsCRS = daoara.getNNonCompliantAUs(); String NNonCompliantAUs = DBUtil.get_single_count_from_rs(NNonCompliantAUsCRS); rprtCnst.addKV("REPORT_N_AUS_NONCOMPLIANT", NNonCompliantAUs); logger.info("================== Query 'audit_results_host' Table END ======"); logger.info("========== Output Report =================================="); MYSQLReportConstantsDAO daorc = new MYSQLReportConstantsDAO(); daorc.create(); daorc.update(rprtCnst.getBox()); MYSQLReportHostSummaryDAO daorhs = new MYSQLReportHostSummaryDAO(); daorhs.create(); CachedRowSet crsarh = daoarh.queryAll(); daorhs.update(crsarh); daorhs.update_new_column("space_offered", schema_host_hb_sel_size); daorhs.update_new_column("space_used", network_host_hb_sel_used_space); Map<String, String> computation_cols_in_net_host_summary = new HashMap<String, String>(); computation_cols_in_net_host_summary.put("space_total", "1"); computation_cols_in_net_host_summary.put("space_used", "2"); daorhs.update_compute_column("space_free", computation_cols_in_net_host_summary); logger.info("========== Audit Report Writer ======================================"); AuditReportXMLWriter arxw = new AuditReportXMLWriter(rprtCnst, configFile.getAuditReportFile()); Set<String> tableSet = tracAuditChecklistDataFacade.findAllTables(); String tracResultTable = "trac_audit_checklist_data"; List<TracAuditChecklistData> evidenceList = null; if (tableSet.contains(tracResultTable)) { evidenceList = tracAuditChecklistDataFacade.findAll(); logger.info("TRAC evidence list is size:" + evidenceList.size()); } else { logger.info("Database does not contain table 'trac_audit_checklist_data'"); } Map<String, String> tracDataMap = new LinkedHashMap<String, String>(); for (TracAuditChecklistData tracdata : evidenceList) { tracDataMap.put(tracdata.getAspectId(), tracdata.getEvidence()); } String writeTimestamp = arxw.write(daoarh, daoara, daorc, tracDataMap); File target = new File(configFile.getAuditReportFileDir() + File.separator + configFile.getAuditSchemaFileName() + "." + writeTimestamp); FileChannel sourceChannel = null; FileChannel targetChannel = null; try { sourceChannel = new FileInputStream(auditSchemaFile).getChannel(); targetChannel = new FileOutputStream(target).getChannel(); targetChannel.transferFrom(sourceChannel, 0, sourceChannel.size()); } catch (IOException e) { logger.log(Level.SEVERE, "IO exception occurred while copying file", e); } finally { try { if (sourceChannel != null) { sourceChannel.close(); } if (targetChannel != null) { targetChannel.close(); } } catch (IOException e) { logger.info("closing channels failed"); } } logger.info("\n========== EXIT drive() ==========================================="); return writeTimestamp; } | protected BufferedImage handleRaremapsException() { if (params.uri.startsWith("http://www.raremaps.com/cgi-bin/gallery.pl/detail/")) try { params.uri = params.uri.replace("cgi-bin/gallery.pl/detail", "maps/medium"); URL url = new URL(params.uri); URLConnection connection = url.openConnection(); return processNewUri(connection); } catch (Exception e) { } return null; } | 885,246 |
1 | public void copy(File aSource, File aDestDir) throws IOException { FileInputStream myInFile = new FileInputStream(aSource); FileOutputStream myOutFile = new FileOutputStream(new File(aDestDir, aSource.getName())); FileChannel myIn = myInFile.getChannel(); FileChannel myOut = myOutFile.getChannel(); boolean end = false; while (true) { int myBytes = myIn.read(theBuffer); if (myBytes != -1) { theBuffer.flip(); myOut.write(theBuffer); theBuffer.clear(); } else break; } myIn.close(); myOut.close(); myInFile.close(); myOutFile.close(); long myEnd = System.currentTimeMillis(); } | @Test public void testOther() throws Exception { filter.init(this.mockConfig); ByteArrayOutputStream jpg = new ByteArrayOutputStream(); IOUtils.copy(this.getClass().getResourceAsStream("Buffalo-Theory.jpg"), jpg); MockFilterChain mockChain = new MockFilterChain(); mockChain.setContentType("image/jpg"); mockChain.setOutputData(jpg.toByteArray()); MockResponse mockResponse = new MockResponse(); filter.doFilter(this.mockRequest, mockResponse, mockChain); Assert.assertTrue("Time stamp content type", "image/jpg".equals(mockResponse.getContentType())); Assert.assertTrue("OutputStream as original", ArrayUtils.isEquals(jpg.toByteArray(), mockResponse.getMockServletOutputStream().getBytes())); } | 885,247 |
0 | public void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException { PrintWriter out = response.getWriter(); response.setContentType("text/html"); HttpSession session = request.getSession(); String session_id = session.getId(); File session_fileDir = new File(destinationDir + java.io.File.separator + session_id); session_fileDir.mkdir(); DiskFileItemFactory fileItemFactory = new DiskFileItemFactory(); fileItemFactory.setSizeThreshold(1 * 1024 * 1024); fileItemFactory.setRepository(tmpDir); ServletFileUpload uploadHandler = new ServletFileUpload(fileItemFactory); String pathToFile = new String(); try { List items = uploadHandler.parseRequest(request); Iterator itr = items.iterator(); while (itr.hasNext()) { FileItem item = (FileItem) itr.next(); if (item.isFormField()) { ; } else { pathToFile = getServletContext().getRealPath("/") + "files" + java.io.File.separator + session_id; File file = new File(pathToFile + java.io.File.separator + item.getName()); item.write(file); getContents(file, pathToFile); ComtorStandAlone.setMode(Mode.CLOUD); Comtor.start(pathToFile); } } try { File reportFile = new File(pathToFile + java.io.File.separator + "comtorReport.txt"); String reportURLString = AWSServices.storeReportS3(reportFile, session_id).toString(); if (reportURLString.startsWith("https")) reportURLString = reportURLString.replaceFirst("https", "http"); String requestURL = request.getRequestURL().toString(); String url = requestURL.substring(0, requestURL.lastIndexOf("/")); out.println("<html><head/><body>"); out.println("<a href=\"" + url + "\">Return to home</a> "); out.println("<a href=\"" + reportURLString + "\">Report URL</a><br/><hr/>"); Scanner scan = new Scanner(reportFile); out.println("<pre>"); while (scan.hasNextLine()) out.println(scan.nextLine()); out.println("</pre><hr/>"); out.println("<a href=\"" + url + "\">Return to home</a> "); out.println("<a href=\"" + reportURLString + "\">Report URL</a><br/>"); out.println("</body></html>"); } catch (Exception ex) { System.err.println(ex); } } catch (FileUploadException ex) { System.err.println("Error encountered while parsing the request" + ex); } catch (Exception ex) { System.err.println("Error encountered while uploading file" + ex); } } | private void addConfigurationResource(final String fileName, NotFoundPolicy notFoundPolicy) { try { final ClassLoader cl = this.getClass().getClassLoader(); final Properties p = new Properties(); final URL url = cl.getResource(fileName); if (url == null) { throw new NakedObjectException("Failed to load configuration resource: " + fileName); } p.load(url.openStream()); LOG.info("configuration resource " + fileName + " loaded"); configuration.add(p); } catch (final Exception e) { if (notFoundPolicy == NotFoundPolicy.FAIL_FAST) { throw new NakedObjectException(e); } LOG.info("configuration resource " + fileName + " not found, but not needed"); } } | 885,248 |
1 | public void write(HttpServletRequest req, HttpServletResponse res, Object bean) throws IntrospectionException, IllegalAccessException, NoSuchMethodException, InvocationTargetException, IOException { res.setContentType(contentType); final Object r; if (HttpRpcServer.HttpRpcOutput.class.isAssignableFrom(bean.getClass())) { HttpRpcServer.HttpRpcOutput output = (HttpRpcServer.HttpRpcOutput) bean; r = output.getResult(); } else r = bean; if (r != null) { final ServletOutputStream outputStream = res.getOutputStream(); if (File.class.isAssignableFrom(r.getClass())) { File file = (File) r; InputStream in = null; try { in = new FileInputStream(file); IOUtils.copy(in, outputStream); } finally { if (in != null) in.close(); } } else if (InputStream.class.isAssignableFrom(r.getClass())) { InputStream in = null; try { in = (InputStream) r; if (ByteArrayInputStream.class.isAssignableFrom(r.getClass())) res.addHeader("Content-Length", Integer.toString(in.available())); IOUtils.copy(in, outputStream); } finally { if (in != null) in.close(); } } outputStream.flush(); } } | void copyFile(File src, File dst) throws IOException { InputStream in = new FileInputStream(src); OutputStream out = new FileOutputStream(dst); byte[] buf = new byte[1024]; int len; while ((len = in.read(buf)) > 0) out.write(buf, 0, len); in.close(); out.close(); } | 885,249 |
0 | private static void copyFile(File sourceFile, File destFile) throws IOException { System.out.println(sourceFile.getAbsolutePath()); System.out.println(destFile.getAbsolutePath()); FileChannel source = new FileInputStream(sourceFile).getChannel(); try { FileChannel destination = new FileOutputStream(destFile).getChannel(); try { destination.transferFrom(source, 0, source.size()); } finally { if (destination != null) { destination.close(); } } } finally { source.close(); } } | private boolean adjust(String stationUrl) throws LastFMError { try { URL url = new URL("http://" + mBaseURL + "/adjust.php?session=" + mSession + "&url=" + URLEncoder.encode(stationUrl, "UTF-8")); HttpURLConnection conn = (HttpURLConnection) url.openConnection(); conn.connect(); InputStream is = conn.getInputStream(); InputStreamReader reader = new InputStreamReader(is); BufferedReader stringReader = new BufferedReader(reader); Utils.OptionsParser options = new Utils.OptionsParser(stringReader); if (!options.parse()) options = null; stringReader.close(); if ("OK".equals(options.get("response"))) { return true; } else { Log.e(TAG, "Adjust failed: \"" + options.get("response") + "\""); return false; } } catch (MalformedURLException e) { Log.e(TAG, "in adjust", e); throw new LastFMError("Adjust failed:" + e.toString()); } catch (UnsupportedEncodingException e) { Log.e(TAG, "in adjust", e); throw new LastFMError("Adjust failed:" + e.toString()); } catch (IOException e) { Log.e(TAG, "in adjust", e); throw new LastFMError("Station not found:" + stationUrl); } } | 885,250 |
1 | protected static String fileName2md5(String input) { try { MessageDigest md = MessageDigest.getInstance("MD5"); md.reset(); md.update(input.getBytes("iso-8859-1")); byte[] byteHash = md.digest(); md.reset(); StringBuffer resultString = new StringBuffer(); for (int i = 0; i < byteHash.length; i++) { resultString.append(Integer.toHexString(0xFF & byteHash[i])); } return (resultString.toString()); } catch (Exception ex) { Logger.error(ex.getClass() + " " + ex.getMessage()); for (int i = 0; i < ex.getStackTrace().length; i++) Logger.error(" " + ex.getStackTrace()[i].toString()); ex.printStackTrace(); } return String.valueOf(Math.random() * Long.MAX_VALUE); } | static String getMD5Hash(String str) throws NoSuchAlgorithmException { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(str.getBytes()); byte[] b = md.digest(); StringBuffer sb = new StringBuffer(); for (int i = 0; i < b.length; i++) { int v = (int) b[i]; v = v < 0 ? 0x100 + v : v; String cc = Integer.toHexString(v); if (cc.length() == 1) sb.append('0'); sb.append(cc); } return sb.toString(); } | 885,251 |
0 | public void delete(String user) throws FidoDatabaseException { try { Connection conn = null; Statement stmt = null; try { conn = fido.util.FidoDataSource.getConnection(); conn.setAutoCommit(false); stmt = conn.createStatement(); stmt.executeUpdate("delete from Principals where PrincipalId = '" + user + "'"); stmt.executeUpdate("delete from Roles where PrincipalId = '" + user + "'"); conn.commit(); } catch (SQLException e) { if (conn != null) conn.rollback(); throw e; } finally { if (stmt != null) stmt.close(); if (conn != null) conn.close(); } } catch (SQLException e) { throw new FidoDatabaseException(e); } } | public void read(Model model, String url) { try { URLConnection conn = new URL(url).openConnection(); String encoding = conn.getContentEncoding(); if (encoding == null) { read(model, conn.getInputStream(), url); } else { read(model, new InputStreamReader(conn.getInputStream(), encoding), url); } } catch (IOException e) { throw new JenaException(e); } } | 885,252 |
0 | public static void parse(URL url, ContentHandler handler) { InputStream input = null; try { input = url.openStream(); SAXParser parser = createSaxParser(); XMLReader reader = parser.getXMLReader(); reader.setContentHandler(handler); reader.parse(new InputSource(input)); } catch (SAXException e) { throw new XmlException("Could not parse xml", e); } catch (IOException e) { throw new XmlException("Could not parse xml", e); } finally { if (input != null) { try { input.close(); } catch (IOException e) { } } } } | public static String encryptePassword(String md5key, String passwordAccount, String encryptedPassword, int passwdenc) throws UnsupportedEncodingException, NoSuchAlgorithmException { MessageDigest md = MessageDigest.getInstance(Constants.ALGORITHM); switch(passwdenc) { case 1: md.update((md5key + encryptedPassword).getBytes("8859_1")); break; case 2: md.update((encryptedPassword + md5key).getBytes("8859_1")); break; default: return null; } return new String(md.digest()); } | 885,253 |
0 | protected Object doExecute() throws Exception { if (args.size() == 1 && "-".equals(args.get(0))) { log.info("Printing STDIN"); cat(new BufferedReader(io.in), io); } else { for (String filename : args) { BufferedReader reader; try { URL url = new URL(filename); log.info("Printing URL: " + url); reader = new BufferedReader(new InputStreamReader(url.openStream())); } catch (MalformedURLException ignore) { File file = new File(filename); log.info("Printing file: " + file); reader = new BufferedReader(new FileReader(file)); } try { cat(reader, io); } finally { IOUtil.close(reader); } } } return SUCCESS; } | static void cleanFile(File file) { final Counter cnt = new Counter(); final File out = new File(FileUtils.appendToFileName(file.getAbsolutePath(), ".cleaned")); final SAMFileReader reader = new SAMFileReader(file); final SAMRecordIterator it = reader.iterator(); final SAMFileWriter writer = new SAMFileWriterFactory().makeSAMOrBAMWriter(reader.getFileHeader(), true, out); if (!it.hasNext()) return; log.info("Cleaning file " + file + " to " + out.getName()); SAMRecord last = it.next(); writer.addAlignment(last); while (it.hasNext()) { final SAMRecord now = it.next(); final int start1 = last.getAlignmentStart(); final int start2 = now.getAlignmentStart(); final int end1 = last.getAlignmentEnd(); final int end2 = now.getAlignmentEnd(); if (start1 == start2 && end1 == end2) { log.debug("Discarding record " + now.toString()); cnt.count(); continue; } writer.addAlignment(now); last = now; } writer.close(); reader.close(); log.info(file + " done, discarded " + cnt.getCount() + " reads"); exe.shutdown(); } | 885,254 |
1 | private void _PostParser(Document document, AnnotationManager annoMan, Document htmldoc, String baseurl) { xformer = annoMan.getTransformer(); builder = annoMan.getBuilder(); String annohash = ""; if (document == null) return; NodeList ndlist = document.getElementsByTagNameNS(annoNS, "body"); if (ndlist.getLength() != 1) { System.out.println("Sorry Annotation Body was found " + ndlist.getLength() + " times"); return; } Element bodynode = (Element) ndlist.item(0); Node htmlNode = bodynode.getElementsByTagName("html").item(0); if (htmlNode == null) htmlNode = bodynode.getElementsByTagName("HTML").item(0); Document newdoc = builder.newDocument(); Element rootelem = newdoc.createElementNS(rdfNS, "r:RDF"); rootelem.setAttribute("xmlns:r", rdfNS); rootelem.setAttribute("xmlns:a", annoNS); rootelem.setAttribute("xmlns:d", dubNS); rootelem.setAttribute("xmlns:t", threadNS); newdoc.appendChild(rootelem); Element tmpelem; NodeList tmpndlist; Element annoElem = newdoc.createElementNS(annoNS, "a:Annotation"); rootelem.appendChild(annoElem); tmpelem = (Element) document.getElementsByTagNameNS(annoNS, "context").item(0); String context = tmpelem.getChildNodes().item(0).getNodeValue(); annoElem.setAttributeNS(annoNS, "a:context", context); NodeList elemcontl = tmpelem.getElementsByTagNameNS(alNS, "context-element"); Node ncontext_element = null; if (elemcontl.getLength() > 0) { Node old_context_element = elemcontl.item(0); ncontext_element = newdoc.importNode(old_context_element, true); } tmpndlist = document.getElementsByTagNameNS(dubNS, "title"); annoElem.setAttributeNS(dubNS, "d:title", tmpndlist.getLength() > 0 ? tmpndlist.item(0).getChildNodes().item(0).getNodeValue() : "Default"); tmpelem = (Element) document.getElementsByTagNameNS(dubNS, "creator").item(0); annoElem.setAttributeNS(dubNS, "d:creator", tmpelem.getChildNodes().item(0).getNodeValue()); tmpelem = (Element) document.getElementsByTagNameNS(annoNS, "created").item(0); annoElem.setAttributeNS(annoNS, "a:created", tmpelem.getChildNodes().item(0).getNodeValue()); tmpelem = (Element) document.getElementsByTagNameNS(dubNS, "date").item(0); annoElem.setAttributeNS(dubNS, "d:date", tmpelem.getChildNodes().item(0).getNodeValue()); tmpndlist = document.getElementsByTagNameNS(dubNS, "language"); String language = (tmpndlist.getLength() > 0 ? tmpndlist.item(0).getChildNodes().item(0).getNodeValue() : "en"); annoElem.setAttributeNS(dubNS, "d:language", language); Node typen = newdoc.importNode(document.getElementsByTagNameNS(rdfNS, "type").item(0), true); annoElem.appendChild(typen); Element contextn = newdoc.createElementNS(annoNS, "a:context"); contextn.setAttributeNS(rdfNS, "r:resource", context); annoElem.appendChild(contextn); Node annotatesn = newdoc.importNode(document.getElementsByTagNameNS(annoNS, "annotates").item(0), true); annoElem.appendChild(annotatesn); Element newbodynode = newdoc.createElementNS(annoNS, "a:body"); annoElem.appendChild(newbodynode); if (ncontext_element != null) { contextn.appendChild(ncontext_element); } else { System.out.println("No context element found, we create one..."); try { XPointer xptr = new XPointer(htmldoc); NodeRange xprange = xptr.getRange(context, htmldoc); Element context_elem = newdoc.createElementNS(alNS, "al:context-element"); context_elem.setAttributeNS(alNS, "al:text", xprange.getContentString()); context_elem.appendChild(newdoc.createTextNode(annoMan.generateContextString(xprange))); contextn.appendChild(context_elem); } catch (XPointerRangeException e2) { e2.printStackTrace(); } } WordFreq wf = new WordFreq(annoMan.extractTextFromNode(htmldoc)); Element docident = newdoc.createElementNS(alNS, "al:document-identifier"); annotatesn.appendChild(docident); docident.setAttributeNS(alNS, "al:orig-url", ((Element) annotatesn).getAttributeNS(rdfNS, "resource")); docident.setAttributeNS(alNS, "al:version", "1"); Iterator it = null; it = wf.getSortedWordlist(); Map.Entry ent; String word; int count; int i = 0; while (it.hasNext()) { ent = (Map.Entry) it.next(); word = ((String) ent.getKey()); count = ((Counter) ent.getValue()).count; if ((word.length() > 4) && (i < 10)) { Element wordelem = newdoc.createElementNS(alNS, "al:word"); wordelem.setAttributeNS(alNS, "al:freq", Integer.toString(count)); wordelem.appendChild(newdoc.createTextNode(word)); docident.appendChild(wordelem); i++; } } try { StringWriter strw = new StringWriter(); MessageDigest messagedigest = MessageDigest.getInstance("MD5"); xformer.transform(new DOMSource(newdoc), new StreamResult(strw)); messagedigest.update(strw.toString().getBytes()); byte[] md5bytes = messagedigest.digest(); annohash = ""; for (int b = 0; b < md5bytes.length; b++) { String s = Integer.toHexString(md5bytes[b] & 0xFF); annohash = annohash + ((s.length() == 1) ? "0" + s : s); } this.annohash = annohash; annoElem.setAttribute("xmlns:al", alNS); annoElem.setAttributeNS(alNS, "al:id", getAnnohash()); Location = (baseurl + "/annotation/" + getAnnohash()); annoElem.setAttributeNS(rdfNS, "r:about", Location); newbodynode.setAttributeNS(rdfNS, "r:resource", baseurl + "/annotation/body/" + getAnnohash()); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } catch (TransformerException e) { e.printStackTrace(); } annoMan.store(newdoc.getDocumentElement()); annoMan.createAnnoResource(newdoc.getDocumentElement(), getAnnohash()); if (htmlNode != null) annoMan.createAnnoBody(htmlNode, getAnnohash()); Location = (this.baseurl + "/annotation/" + getAnnohash()); annoElem.setAttributeNS(rdfNS, "r:about", Location); this.responseDoc = newdoc; } | public String md5Encode(String pass) { MessageDigest md = null; try { md = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } md.update(pass.getBytes()); byte[] result = md.digest(); return new String(result); } | 885,255 |
0 | public void init() { this.setFormulaCalculationMode(WorkBookHandle.CALCULATE_ALWAYS); try { if (memeId < 0) { } else { conurl = new URL(ServerURL + "?meme_id=" + memeId); java.io.InputStream xmlstr = conurl.openStream(); this.removeAllWorkSheets(); this.setFormulaCalculationMode(WorkBookHandle.CALCULATE_EXPLICIT); this.setStringEncodingMode(WorkBookHandle.STRING_ENCODING_UNICODE); this.setDupeStringMode(WorkBookHandle.SHAREDUPES); ExtenXLS.parseNBind(this, xmlstr); this.setFormulaCalculationMode(WorkBookHandle.CALCULATE_ALWAYS); } } catch (Exception ex) { throw new WorkBookException("Error while connecting to: " + ServerURL + ":" + ex.toString(), WorkBookException.RUNTIME_ERROR); } } | public static boolean start(RootDoc root) { Logger log = Logger.getLogger("DocletGenerator"); if (destination == null) { try { ruleListenerDef = IOUtils.toString(GeneratorOfXmlSchemaForConvertersDoclet.class.getResourceAsStream("/RuleListenersFragment.xsd"), "UTF-8"); String fn = System.getenv("annocultor.xconverter.destination.file.name"); fn = (fn == null) ? "./../../../src/site/resources/schema/XConverterInclude.xsd" : fn; destination = new File(fn); if (destination.exists()) { destination.delete(); } FileOutputStream os; os = new FileOutputStream(new File(destination.getParentFile(), "XConverter.xsd")); IOUtils.copy(new AutoCloseInputStream(GeneratorOfXmlSchemaForConvertersDoclet.class.getResourceAsStream("/XConverterTemplate.xsd")), os); os.close(); os = new FileOutputStream(destination); IOUtils.copy(new AutoCloseInputStream(GeneratorOfXmlSchemaForConvertersDoclet.class.getResourceAsStream("/XConverterInclude.xsd")), os); os.close(); } catch (Exception e) { try { throw new RuntimeException("On destination " + destination.getCanonicalPath(), e); } catch (IOException e1) { throw new RuntimeException(e1); } } } try { String s = Utils.loadFileToString(destination.getCanonicalPath(), "\n"); int breakPoint = s.indexOf(XSD_TEXT_TO_REPLACED_WITH_GENERATED_XML_SIGNATURES); if (breakPoint < 0) { throw new Exception("Signature not found in XSD: " + XSD_TEXT_TO_REPLACED_WITH_GENERATED_XML_SIGNATURES); } String preambula = s.substring(0, breakPoint); String appendix = s.substring(breakPoint); destination.delete(); PrintWriter schemaWriter = new PrintWriter(destination); schemaWriter.print(preambula); ClassDoc[] classes = root.classes(); for (int i = 0; i < classes.length; ++i) { ClassDoc cd = classes[i]; PrintWriter documentationWriter = null; if (getSuperClasses(cd).contains(Rule.class.getName())) { for (ConstructorDoc constructorDoc : cd.constructors()) { if (constructorDoc.isPublic()) { if (isMeantForXMLAccess(constructorDoc)) { if (documentationWriter == null) { File file = new File("./../../../src/site/xdoc/rules." + cd.name() + ".xml"); documentationWriter = new PrintWriter(file); log.info("Generating doc for rule " + file.getCanonicalPath()); printRuleDocStart(cd, documentationWriter); } boolean initFound = false; for (MethodDoc methodDoc : cd.methods()) { if ("init".equals(methodDoc.name())) { if (methodDoc.parameters().length == 0) { initFound = true; break; } } } if (!initFound) { } printConstructorSchema(constructorDoc, schemaWriter); if (documentationWriter != null) { printConstructorDoc(constructorDoc, documentationWriter); } } } } } if (documentationWriter != null) { printRuleDocEnd(documentationWriter); } } schemaWriter.print(appendix); schemaWriter.close(); log.info("Saved to " + destination.getCanonicalPath()); } catch (Exception e) { throw new RuntimeException(e); } return true; } | 885,256 |
1 | public static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { if (System.getProperty("os.name").toUpperCase().indexOf("WIN") != -1) { int maxCount = (64 * 1024 * 1024) - (32 * 1024); long size = inChannel.size(); long position = 0; while (position < size) { position += inChannel.transferTo(position, maxCount, outChannel); } } else { inChannel.transferTo(0, inChannel.size(), outChannel); } } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | public static void uncompress(File srcFile, File destFile) throws IOException { InputStream input = null; OutputStream output = null; try { input = new GZIPInputStream(new FileInputStream(srcFile)); output = new BufferedOutputStream(new FileOutputStream(destFile)); IOUtils.copyLarge(input, output); } finally { IOUtils.closeQuietly(output); IOUtils.closeQuietly(input); } } | 885,257 |
1 | public static void copy(String a, String b) throws IOException { File inputFile = new File(a); File outputFile = new File(b); FileReader in = new FileReader(inputFile); FileWriter out = new FileWriter(outputFile); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); } | private void executeScript(SQLiteDatabase sqlDatabase, InputStream input) { StringWriter writer = new StringWriter(); try { IOUtils.copy(input, writer); } catch (IOException e) { throw new ComixException("Could not read the database script", e); } String multipleSql = writer.toString(); String[] split = multipleSql.split("-- SCRIPT_SPLIT --"); for (String sql : split) { if (!sql.trim().equals("")) { sqlDatabase.execSQL(sql); } } } | 885,258 |
0 | public void createZipCopy(IUIContext ui, final String zipFileName, final File[] filesToZip, final FilenameFilter fileFilter, Timestamp timestamp) { TestCase.assertNotNull(ui); TestCase.assertNotNull(zipFileName); TestCase.assertFalse(zipFileName.trim().length() == 0); TestCase.assertNotNull(filesToZip); TestCase.assertNotNull(timestamp); String nameCopy = zipFileName; if (nameCopy.endsWith(".zip")) { nameCopy = nameCopy.substring(0, zipFileName.length() - 4); } nameCopy = nameCopy + "_" + timestamp.toString() + ".zip"; final String finalZip = nameCopy; IWorkspaceRunnable noResourceChangedEventsRunner = new IWorkspaceRunnable() { public void run(IProgressMonitor runnerMonitor) throws CoreException { try { Map<String, File> projectFiles = new HashMap<String, File>(); IPath basePath = new Path("/"); for (File nextLocation : filesToZip) { projectFiles.putAll(getFilesToZip(nextLocation, basePath, fileFilter)); } if (projectFiles.isEmpty()) { PlatformActivator.logDebug("Zip file (" + zipFileName + ") not created because there were no files to zip"); return; } IPath resultsPath = PlatformActivator.getDefault().getResultsPath(); File copyRoot = resultsPath.toFile(); copyRoot.mkdirs(); IPath zipFilePath = resultsPath.append(new Path(finalZip)); String zipFileName = zipFilePath.toPortableString(); ZipOutputStream out = new ZipOutputStream(new FileOutputStream(zipFileName)); try { out.setLevel(Deflater.DEFAULT_COMPRESSION); for (String filePath : projectFiles.keySet()) { File nextFile = projectFiles.get(filePath); FileInputStream fin = new FileInputStream(nextFile); try { out.putNextEntry(new ZipEntry(filePath)); try { byte[] bin = new byte[4096]; int bread = fin.read(bin, 0, 4096); while (bread != -1) { out.write(bin, 0, bread); bread = fin.read(bin, 0, 4096); } } finally { out.closeEntry(); } } finally { fin.close(); } } } finally { out.close(); } } catch (FileNotFoundException e) { Status error = new Status(Status.ERROR, PlatformActivator.PLUGIN_ID, Status.ERROR, e.getLocalizedMessage(), e); throw new CoreException(error); } catch (IOException e) { Status error = new Status(Status.ERROR, PlatformActivator.PLUGIN_ID, Status.ERROR, e.getLocalizedMessage(), e); throw new CoreException(error); } } }; try { IWorkspace workspace = ResourcesPlugin.getWorkspace(); workspace.run(noResourceChangedEventsRunner, workspace.getRoot(), IWorkspace.AVOID_UPDATE, new NullProgressMonitor()); } catch (CoreException ce) { PlatformActivator.logException(ce); } } | static String hash(String text) { try { StringBuffer plugins = new StringBuffer(); for (PlayPlugin plugin : Play.plugins) { plugins.append(plugin.getClass().getName()); } MessageDigest messageDigest = MessageDigest.getInstance("MD5"); messageDigest.reset(); messageDigest.update((Play.version + plugins.toString() + text).getBytes("utf-8")); byte[] digest = messageDigest.digest(); StringBuilder builder = new StringBuilder(); for (int i = 0; i < digest.length; ++i) { int value = digest[i]; if (value < 0) { value += 256; } builder.append(Integer.toHexString(value)); } return builder.toString(); } catch (Exception e) { throw new RuntimeException(e); } } | 885,259 |
1 | public String getMessageofTheDay(String id) { StringBuffer mod = new StringBuffer(); int serverModId = 0; int clientModId = 0; BufferedReader input = null; try { URL url = new URL(FlyShareApp.BASE_WEBSITE_URL + "/mod.txt"); input = new BufferedReader(new InputStreamReader(url.openStream())); String inputLine; inputLine = input.readLine(); try { clientModId = Integer.parseInt(id); serverModId = Integer.parseInt(inputLine); } catch (NumberFormatException e) { } if (clientModId < serverModId || clientModId == 0) { mod.append(serverModId); mod.append('|'); while ((inputLine = input.readLine()) != null) mod.append(inputLine); } } catch (MalformedURLException e) { } catch (IOException e) { } finally { try { input.close(); } catch (Exception e) { } } return mod.toString(); } | public boolean initFile(String filename) { showStatus("Loading the file, please wait..."); x_units = "?"; y_units = "ARBITRARY"; Datatype = "UNKNOWN"; if (filename.toLowerCase().endsWith(".spc")) { try { URL url = new URL(getDocumentBase(), filename); InputStream stream = url.openStream(); DataInputStream fichier = new DataInputStream(stream); byte ftflgs = fichier.readByte(); byte fversn = fichier.readByte(); if (((ftflgs != 0) && (ftflgs != 0x20)) || (fversn != 0x4B)) { Current_Error = ", support only Evenly Spaced new version 4B"; return false; } byte fexp = fichier.readByte(); if (fexp != 0x80) YFactor = Math.pow(2, fexp) / Math.pow(2, 32); Nbpoints = NumericDataUtils.convToIntelInt(fichier.readInt()); if (Firstx == shitty_starting_constant) { Firstx = NumericDataUtils.convToIntelDouble(fichier.readLong()); Lastx = NumericDataUtils.convToIntelDouble(fichier.readLong()); } byte fxtype = fichier.readByte(); switch(fxtype) { case 0: x_units = "Arbitrary"; break; case 1: x_units = "Wavenumber (cm -1)"; break; case 2: x_units = "Micrometers"; break; case 3: x_units = "Nanometers"; break; case 4: x_units = "Seconds"; break; case 5: x_units = "Minuts"; break; case 6: x_units = "Hertz"; break; case 7: x_units = "Kilohertz"; break; case 8: x_units = "Megahertz"; break; case 9: x_units = "Mass (M/z)"; break; case 10: x_units = "Parts per million"; break; case 11: x_units = "Days"; break; case 12: x_units = "Years"; break; case 13: x_units = "Raman Shift (cm -1)"; break; case 14: x_units = "Electron Volt (eV)"; break; case 16: x_units = "Diode Number"; break; case 17: x_units = "Channel"; break; case 18: x_units = "Degrees"; break; case 19: x_units = "Temperature (F)"; break; case 20: x_units = "Temperature (C)"; break; case 21: x_units = "Temperature (K)"; break; case 22: x_units = "Data Points"; break; case 23: x_units = "Milliseconds (mSec)"; break; case 24: x_units = "Microseconds (uSec)"; break; case 25: x_units = "Nanoseconds (nSec)"; break; case 26: x_units = "Gigahertz (GHz)"; break; case 27: x_units = "Centimeters (cm)"; break; case 28: x_units = "Meters (m)"; break; case 29: x_units = "Millimeters (mm)"; break; case 30: x_units = "Hours"; break; case -1: x_units = "(double interferogram)"; break; } byte fytype = fichier.readByte(); switch(fytype) { case 0: y_units = "Arbitrary Intensity"; break; case 1: y_units = "Interfeogram"; break; case 2: y_units = "Absorbance"; break; case 3: y_units = "Kubelka-Munk"; break; case 4: y_units = "Counts"; break; case 5: y_units = "Volts"; break; case 6: y_units = "Degrees"; break; case 7: y_units = "Milliamps"; break; case 8: y_units = "Millimeters"; break; case 9: y_units = "Millivolts"; break; case 10: y_units = "Log (1/R)"; break; case 11: y_units = "Percent"; break; case 12: y_units = "Intensity"; break; case 13: y_units = "Relative Intensity"; break; case 14: y_units = "Energy"; break; case 16: y_units = "Decibel"; break; case 19: y_units = "Temperature (F)"; break; case 20: y_units = "Temperature (C)"; break; case 21: y_units = "Temperature (K)"; break; case 22: y_units = "Index of Refraction [N]"; break; case 23: y_units = "Extinction Coeff. [K]"; break; case 24: y_units = "Real"; break; case 25: y_units = "Imaginary"; break; case 26: y_units = "Complex"; break; case -128: y_units = "Transmission"; break; case -127: y_units = "Reflectance"; break; case -126: y_units = "Arbitrary or Single Beam with Valley Peaks"; break; case -125: y_units = "Emission"; break; } if (ftflgs == 0) { fichier.skipBytes(512 - 30); } else { fichier.skipBytes(188); byte b; int i = 0; x_units = ""; do { b = fichier.readByte(); x_units += (char) b; i++; } while (b != 0); int j = 0; y_units = ""; do { b = fichier.readByte(); y_units += (char) b; j++; } while (b != 0); fichier.skipBytes(512 - 30 - 188 - i - j); } fichier.skipBytes(32); My_ZoneVisu.tableau_points = new double[Nbpoints]; if (fexp == 0x80) { for (int i = 0; i < Nbpoints; i++) { My_ZoneVisu.tableau_points[i] = NumericDataUtils.convToIntelFloat(fichier.readInt()); } } else { for (int i = 0; i < Nbpoints; i++) { My_ZoneVisu.tableau_points[i] = NumericDataUtils.convToIntelInt(fichier.readInt()); } } } catch (Exception e) { Current_Error = "SPC file corrupted"; return false; } Datatype = "XYDATA"; return true; } try { URL url = new URL(getDocumentBase(), filename); InputStream stream = url.openStream(); BufferedReader fichier = new BufferedReader(new InputStreamReader(stream)); texte = new Vector(); String s; while ((s = fichier.readLine()) != null) { texte.addElement(s); } nbLignes = texte.size(); } catch (Exception e) { return false; } int My_Counter = 0; String uneligne = ""; while (My_Counter < nbLignes) { try { StringTokenizer mon_token; do { uneligne = (String) texte.elementAt(My_Counter); My_Counter++; mon_token = new StringTokenizer(uneligne, " "); } while (My_Counter < nbLignes && mon_token.hasMoreTokens() == false); if (mon_token.hasMoreTokens() == true) { String keyword = mon_token.nextToken(); if (StringDataUtils.compareStrings(keyword, "##TITLE=") == 0) TexteTitre = uneligne.substring(9); if (StringDataUtils.compareStrings(keyword, "##FIRSTX=") == 0) Firstx = Double.valueOf(mon_token.nextToken()).doubleValue(); if (StringDataUtils.compareStrings(keyword, "##LASTX=") == 0) Lastx = Double.valueOf(mon_token.nextToken()).doubleValue(); if (StringDataUtils.compareStrings(keyword, "##YFACTOR=") == 0) YFactor = Double.valueOf(mon_token.nextToken()).doubleValue(); if (StringDataUtils.compareStrings(keyword, "##NPOINTS=") == 0) Nbpoints = Integer.valueOf(mon_token.nextToken()).intValue(); if (StringDataUtils.compareStrings(keyword, "##XUNITS=") == 0) x_units = uneligne.substring(10); if (StringDataUtils.compareStrings(keyword, "##YUNITS=") == 0) y_units = uneligne.substring(10); if (StringDataUtils.compareStrings(keyword, "##.OBSERVE") == 0 && StringDataUtils.compareStrings(mon_token.nextToken(), "FREQUENCY=") == 0) nmr_observe_frequency = Double.valueOf(mon_token.nextToken()).doubleValue(); if (StringDataUtils.compareStrings(keyword, "##XYDATA=") == 0 && StringDataUtils.compareStrings(mon_token.nextToken(), "(X++(Y..Y))") == 0) Datatype = "XYDATA"; if (StringDataUtils.compareStrings(keyword, "##XYDATA=(X++(Y..Y))") == 0) Datatype = "XYDATA"; if (StringDataUtils.compareStrings(keyword, "##PEAK") == 0 && StringDataUtils.compareStrings(mon_token.nextToken(), "TABLE=") == 0 && StringDataUtils.compareStrings(mon_token.nextToken(), "(XY..XY)") == 0) Datatype = "PEAK TABLE"; if (StringDataUtils.compareStrings(keyword, "##PEAK") == 0 && StringDataUtils.compareStrings(mon_token.nextToken(), "TABLE=(XY..XY)") == 0) Datatype = "PEAK TABLE"; } } catch (Exception e) { } } if (Datatype.compareTo("UNKNOWN") == 0) return false; if (Datatype.compareTo("PEAK TABLE") == 0 && x_units.compareTo("?") == 0) x_units = "M/Z"; if (StringDataUtils.truncateEndBlanks(x_units).compareTo("HZ") == 0 && nmr_observe_frequency != shitty_starting_constant) { Firstx /= nmr_observe_frequency; Lastx /= nmr_observe_frequency; x_units = "PPM."; } String resultat_move_points = Move_Points_To_Tableau(); if (resultat_move_points.compareTo("OK") != 0) { Current_Error = resultat_move_points; return false; } return true; } | 885,260 |
1 | public static boolean copyFile(final File fileFrom, final File fileTo) { assert fileFrom != null : "fileFrom is null"; assert fileTo != null : "fileTo is null"; LOGGER.info(buildLogString(COPY_FILE_INFO, new Object[] { fileFrom, fileTo })); boolean error = true; FileInputStream inputStream = null; FileOutputStream outputStream = null; try { inputStream = new FileInputStream(fileFrom); outputStream = new FileOutputStream(fileTo); final FileChannel inChannel = inputStream.getChannel(); final FileChannel outChannel = outputStream.getChannel(); inChannel.transferTo(0, inChannel.size(), outChannel); error = false; } catch (final IOException e) { LOGGER.log(SEVERE, buildLogString(COPY_FILE_ERROR, new Object[] { fileFrom, fileTo }), e); } finally { closeCloseable(inputStream, fileFrom); closeCloseable(outputStream, fileTo); } return error; } | public static boolean writeFileByChars(Reader pReader, File pFile, boolean pAppend) { boolean flag = false; try { FileWriter fw = new FileWriter(pFile, pAppend); IOUtils.copy(pReader, fw); fw.flush(); fw.close(); pReader.close(); flag = true; } catch (Exception e) { LOG.error("将字符流写入�?" + pFile.getName() + "出现异常�?", e); } return flag; } | 885,261 |
0 | public void registerSchema(String newSchemaName, String objectControlller, long boui, String expression, String schema) throws SQLException { Connection cndef = null; PreparedStatement pstm = null; try { cndef = this.getRepositoryConnection(p_ctx.getApplication(), "default", 2); String friendlyName = "Schema created by object [" + objectControlller + "] with boui [" + boui + "]"; pstm = cndef.prepareStatement("DELETE FROM NGTDIC WHERE TABLENAME=? and objecttype='S'"); pstm.setString(1, newSchemaName); pstm.executeUpdate(); pstm.close(); pstm = cndef.prepareStatement("INSERT INTO NGTDIC (\"SCHEMA\",OBJECTNAME,OBJECTTYPE,TABLENAME, " + "FRIENDLYNAME, EXPRESSION) VALUES (" + "?,?,?,?,?,?)"); pstm.setString(1, schema); pstm.setString(2, newSchemaName); pstm.setString(3, "S"); pstm.setString(4, newSchemaName); pstm.setString(5, friendlyName); pstm.setString(6, expression); pstm.executeUpdate(); pstm.close(); cndef.commit(); } catch (Exception e) { cndef.rollback(); e.printStackTrace(); throw new SQLException(e.getMessage()); } finally { if (pstm != null) { try { pstm.close(); } catch (Exception e) { } } } } | public void saveUserUpFile(UserInfo userInfo, String distFileName, InputStream instream) throws IOException { String fullPicFile = BBSCSUtil.getUserWebFilePath(userInfo.getId()) + distFileName; String fullPicFileSmall = BBSCSUtil.getUserWebFilePath(userInfo.getId()) + distFileName + Constant.IMG_SMALL_FILEPREFIX; OutputStream bos = new FileOutputStream(fullPicFile); IOUtils.copy(instream, bos); ImgUtil.reduceImg(fullPicFile, fullPicFileSmall, this.getSysConfig().getFaceWidth(), this.getSysConfig().getFaceHigh(), 0); } | 885,262 |
0 | public static int deleteExecution(String likePatten) { Connection conn = null; PreparedStatement psmt = null; StringBuffer SQL = new StringBuffer(200); int deleted = 0; SQL.append(" DELETE FROM JHF_EXCEPTION ").append(" WHERE ORDER_ID LIKE ? "); try { conn = JdbcConnectionPool.mainConnection(); conn.setAutoCommit(false); conn.setReadOnly(false); psmt = conn.prepareStatement(SQL.toString()); psmt.setString(1, "%" + likePatten + "%"); deleted = psmt.executeUpdate(); conn.commit(); } catch (SQLException e) { if (null != conn) { try { conn.rollback(); } catch (SQLException e1) { System.out.println(" error when roll back !"); } } } finally { try { if (null != psmt) { psmt.close(); psmt = null; } if (null != conn) { conn.close(); conn = null; } } catch (SQLException e) { System.out.println(" error when psmt close or conn close ."); } } return deleted; } | public static void copy(String sourceFile, String targetFile) throws IOException { FileChannel sourceChannel = new FileInputStream(sourceFile).getChannel(); FileChannel targetChannel = new FileOutputStream(targetFile).getChannel(); targetChannel.transferFrom(sourceChannel, 0, sourceChannel.size()); sourceChannel.close(); targetChannel.close(); } | 885,263 |
1 | public static Document validateXml(File messageFile, URL inputUrl, String[] catalogs) throws IOException, ParserConfigurationException, Exception, SAXException, FileNotFoundException { InputSource source = new InputSource(inputUrl.openStream()); Document logDoc = DomUtil.getNewDom(); XMLReader reader = SaxUtil.getXMLFormatLoggingXMLReader(log, logDoc, true, catalogs); reader.parse(source); InputStream logStream = DomUtil.serializeToInputStream(logDoc, "utf-8"); System.out.println("Creating message file \"" + messageFile.getAbsolutePath() + "\"..."); OutputStream fos = new FileOutputStream(messageFile); IOUtils.copy(logStream, fos); return logDoc; } | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 885,264 |
0 | @Override protected Metadata doGet(final String url) throws WebServiceException, MbXMLException { final HttpGet method = new HttpGet(url); this.log.debug(url); Metadata metadata = null; try { final HttpResponse response = this.httpClient.execute(method); final int statusCode = response.getStatusLine().getStatusCode(); if (HttpStatus.SC_OK == statusCode) { final InputStream responseStream = response.getEntity().getContent(); metadata = this.getParser().parse(responseStream); } else { final String responseString = response.getEntity() != null ? EntityUtils.toString(response.getEntity()) : ""; switch(statusCode) { case HttpStatus.SC_NOT_FOUND: throw new ResourceNotFoundException(responseString); case HttpStatus.SC_BAD_REQUEST: throw new RequestException(responseString); case HttpStatus.SC_FORBIDDEN: throw new AuthorizationException(responseString); case HttpStatus.SC_UNAUTHORIZED: throw new AuthorizationException(responseString); default: String em = "web service returned unknown status '" + statusCode + "', response was: " + responseString; this.log.error(em); throw new WebServiceException(em); } } } catch (IOException e) { this.log.error("Fatal transport error: " + e.getMessage()); throw new WebServiceException(e.getMessage(), e); } return metadata; } | public static Test suite() throws Exception { java.net.URL url = ClassLoader.getSystemResource("host0.jndi.properties"); java.util.Properties host0JndiProps = new java.util.Properties(); host0JndiProps.load(url.openStream()); java.util.Properties systemProps = System.getProperties(); systemProps.putAll(host0JndiProps); System.setProperties(systemProps); TestSuite suite = new TestSuite(); suite.addTest(new TestSuite(T06OTSInterpositionUnitTestCase.class)); TestSetup wrapper = new JBossTestSetup(suite) { protected void setUp() throws Exception { super.setUp(); deploy("dtmpassthrough2ots.jar"); } protected void tearDown() throws Exception { undeploy("dtmpassthrough2ots.jar"); super.tearDown(); } }; return wrapper; } | 885,265 |
0 | @Test public void testWriteModel() { Model model = new Model(); model.setName("MY_MODEL1"); Stereotype st1 = new Stereotype(); st1.setName("Pirulito1"); PackageObject p1 = new PackageObject("p1"); ClassType type1 = new ClassType("Class1"); type1.setStereotype(st1); type1.addMethod(new Method("doSomething")); p1.add(type1); ClassType type2 = new ClassType("Class2"); Method m2 = new Method("doSomethingElse"); m2.setType(type1); type2.addMethod(m2); p1.add(type2); Generalization g = new Generalization(); g.setSource(type1); g.setTarget(type1); p1.add(g); model.add(p1); ModelWriter writer = new ModelWriter(); try { File modelFile = new File("target", "test.model"); writer.write(model, modelFile); File xmlFile = new File("target", "test.xml"); xmlFile.createNewFile(); IOUtils.copy(new GZIPInputStream(new FileInputStream(modelFile)), new FileOutputStream(xmlFile)); } catch (IOException e) { log.error(e.getMessage(), e); Assert.fail(e.getMessage()); } } | public static String SHA1(String text) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md; md = MessageDigest.getInstance("SHA-1"); byte[] sha1hash = new byte[40]; md.update(text.getBytes("iso-8859-1"), 0, text.length()); sha1hash = md.digest(); return convertToHex(sha1hash); } | 885,266 |
0 | protected URLConnection openURLConnection() throws IOException { final String locator = getMediaLocator(); if (locator == null) { return null; } final URL url; try { url = new URL(locator); } catch (MalformedURLException ex) { throw new IllegalArgumentException(ex); } final URLConnection connection = url.openConnection(); connection.connect(); return connection; } | public static long copyFile(File source, File target) throws IOException { FileInputStream fileInputStream = null; FileOutputStream fileOutputStream = null; try { fileInputStream = new FileInputStream(source); fileOutputStream = new FileOutputStream(target); FileChannel in = fileInputStream.getChannel(); FileChannel out = fileOutputStream.getChannel(); return out.transferFrom(in, 0, source.length()); } finally { if (fileInputStream != null) fileInputStream.close(); if (fileOutputStream != null) fileOutputStream.close(); } } | 885,267 |
1 | public static void decompressGZIP(File gzip, File to, long skip) throws IOException { GZIPInputStream gis = null; BufferedOutputStream bos = null; try { bos = new BufferedOutputStream(new FileOutputStream(to)); FileInputStream fis = new FileInputStream(gzip); fis.skip(skip); gis = new GZIPInputStream(fis); final byte[] buffer = new byte[IO_BUFFER]; int read = -1; while ((read = gis.read(buffer)) != -1) { bos.write(buffer, 0, read); } } finally { try { gis.close(); } catch (Exception nope) { } try { bos.flush(); } catch (Exception nope) { } try { bos.close(); } catch (Exception nope) { } } } | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 885,268 |
1 | @Override protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { String pathInfo = req.getPathInfo(); String pluginPathInfo = pathInfo.substring(prefix.length()); String gwtPathInfo = pluginPathInfo.substring(pluginKey.length() + 1); String clPath = CLASSPATH_PREFIX + gwtPathInfo; InputStream input = cl.getResourceAsStream(clPath); if (input != null) { try { OutputStream output = resp.getOutputStream(); IOUtils.copy(input, output); } finally { input.close(); } } else { resp.sendError(HttpServletResponse.SC_NOT_FOUND); } } | private void displayDiffResults() throws IOException { File outFile = File.createTempFile("diff", ".htm"); outFile.deleteOnExit(); FileOutputStream outStream = new FileOutputStream(outFile); BufferedWriter out = new BufferedWriter(new OutputStreamWriter(outStream)); out.write("<html><head><title>LOC Differences</title>\n" + SCRIPT + "</head>\n" + "<body bgcolor='#ffffff'>\n" + "<div onMouseOver=\"window.defaultStatus='Metrics'\">\n"); if (addedTable.length() > 0) { out.write("<table border><tr><th>Files Added:</th>" + "<th>Add</th><th>Type</th></tr>"); out.write(addedTable.toString()); out.write("</table><br><br>"); } if (modifiedTable.length() > 0) { out.write("<table border><tr><th>Files Modified:</th>" + "<th>Base</th><th>Del</th><th>Mod</th><th>Add</th>" + "<th>Total</th><th>Type</th></tr>"); out.write(modifiedTable.toString()); out.write("</table><br><br>"); } if (deletedTable.length() > 0) { out.write("<table border><tr><th>Files Deleted:</th>" + "<th>Del</th><th>Type</th></tr>"); out.write(deletedTable.toString()); out.write("</table><br><br>"); } out.write("<table name=METRICS BORDER>\n"); if (modifiedTable.length() > 0 || deletedTable.length() > 0) { out.write("<tr><td>Base: </td><td>"); out.write(Long.toString(base)); out.write("</td></tr>\n<tr><td>Deleted: </td><td>"); out.write(Long.toString(deleted)); out.write("</td></tr>\n<tr><td>Modified: </td><td>"); out.write(Long.toString(modified)); out.write("</td></tr>\n<tr><td>Added: </td><td>"); out.write(Long.toString(added)); out.write("</td></tr>\n<tr><td>New & Changed: </td><td>"); out.write(Long.toString(added + modified)); out.write("</td></tr>\n"); } out.write("<tr><td>Total: </td><td>"); out.write(Long.toString(total)); out.write("</td></tr>\n</table></div>"); redlinesOut.close(); out.flush(); InputStream redlines = new FileInputStream(redlinesTempFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = redlines.read(buffer)) != -1) outStream.write(buffer, 0, bytesRead); outStream.write("</BODY></HTML>".getBytes()); outStream.close(); Browser.launch(outFile.toURL().toString()); } | 885,269 |
0 | public static void copyFile(File fromFile, File toFile) throws OWFileCopyException { try { FileChannel src = new FileInputStream(fromFile).getChannel(); FileChannel dest = new FileOutputStream(toFile).getChannel(); dest.transferFrom(src, 0, src.size()); src.close(); dest.close(); } catch (IOException e) { throw (new OWFileCopyException("An error occurred while copying a file", e)); } } | public String hasheMotDePasse(String mdp) { MessageDigest sha = null; try { sha = MessageDigest.getInstance("SHA-1"); } catch (NoSuchAlgorithmException ex) { } sha.reset(); sha.update(mdp.getBytes()); byte[] digest = sha.digest(); String pass = new String(Base64.encode(digest)); pass = "{SHA}" + pass; return pass; } | 885,270 |
1 | public boolean crear() { int result = 0; String sql = "insert into torneo" + "(nombreTorneo, ciudad, fechaInicio, fechaFinal, organizador, numeroDivisiones, terminado)" + "values (?, ?, ?, ?, ?, ?, ?)"; try { connection = conexionBD.getConnection(); connection.setAutoCommit(false); ps = connection.prepareStatement(sql); populatePreparedStatement(eltorneo); result = ps.executeUpdate(); connection.commit(); } catch (SQLException ex) { ex.printStackTrace(); try { connection.rollback(); } catch (SQLException exe) { exe.printStackTrace(); } } finally { conexionBD.close(ps); conexionBD.close(connection); } return (result > 0); } | public void registerSchema(String newSchemaName, String objectControlller, long boui, String expression, String schema) throws SQLException { Connection cndef = null; PreparedStatement pstm = null; try { cndef = this.getRepositoryConnection(p_ctx.getApplication(), "default", 2); String friendlyName = MessageLocalizer.getMessage("SCHEMA_CREATED_BY_OBJECT") + " [" + objectControlller + "] " + MessageLocalizer.getMessage("WITH_BOUI") + " [" + boui + "]"; pstm = cndef.prepareStatement("DELETE FROM NGTDIC WHERE TABLENAME=? and objecttype='S'"); pstm.setString(1, newSchemaName); pstm.executeUpdate(); pstm.close(); pstm = cndef.prepareStatement("INSERT INTO NGTDIC (SCHEMA,OBJECTNAME,OBJECTTYPE,TABLENAME, " + "FRIENDLYNAME, EXPRESSION) VALUES (" + "?,?,?,?,?,?)"); pstm.setString(1, schema); pstm.setString(2, newSchemaName); pstm.setString(3, "S"); pstm.setString(4, newSchemaName); pstm.setString(5, friendlyName); pstm.setString(6, expression); pstm.executeUpdate(); pstm.close(); cndef.commit(); } catch (Exception e) { cndef.rollback(); e.printStackTrace(); throw new SQLException(e.getMessage()); } finally { if (pstm != null) { try { pstm.close(); } catch (Exception e) { } } } } | 885,271 |
0 | protected TaobaoResponse _fetch(HttpPost post, Map<String, CharSequence> payload, File file) throws IOException { Set<Entry<String, CharSequence>> entries = payload.entrySet(); List<NameValuePair> nvps = new ArrayList<NameValuePair>(); for (Entry<String, CharSequence> entry : entries) { NameValuePair nvp = new BasicNameValuePair(entry.getKey(), (String) entry.getValue()); nvps.add(nvp); } if (file != null) { } else { post.setEntity(new UrlEncodedFormEntity(nvps, HTTP.UTF_8)); } if (this.keepAlive) { post.setHeader("Connection", "Keep-Alive"); } Header responseHeader = null; HttpResponse response = httpClient.execute(post); responseHeader = post.getLastHeader("sip_status"); String body = EntityUtils.toString(response.getEntity()); TaobaoResponse urlRsp = new TaobaoResponse(); if (responseHeader != null) { String status = responseHeader.getValue(); if (!SIP_STATUS_OK.equals(status)) { urlRsp.setErrorCode(status); urlRsp.setMsg(post.getLastHeader("sip_error_message").getValue()); if (status.equals("1004")) { urlRsp.setRedirectUrl(post.getLastHeader("sip_isp_loginurl").getValue()); } } } urlRsp.setBody(body); return urlRsp; } | FileCacheInputStreamFountain(FileCacheInputStreamFountainFactory factory, InputStream in) throws IOException { file = factory.createFile(); OutputStream out = new FileOutputStream(file); IOUtils.copy(in, out); in.close(); out.close(); } | 885,272 |
1 | public List<SuspectFileProcessingStatus> retrieve() throws Exception { BufferedOutputStream bos = null; try { String listFilePath = GeneralUtils.generateAbsolutePath(getDownloadDirectoryPath(), getListName(), "/"); listFilePath = listFilePath.concat(".xml"); if (!new File(getDownloadDirectoryPath()).exists()) { FileUtils.forceMkdir(new File(getDownloadDirectoryPath())); } FileOutputStream listFileOutputStream = new FileOutputStream(listFilePath); bos = new BufferedOutputStream(listFileOutputStream); InputStream is = null; if (getUseProxy()) { is = URLUtils.getResponse(getUrl(), getUserName(), getPassword(), URLUtils.HTTP_GET_METHOD, getProxyHost(), getProxyPort()); IOUtils.copyLarge(is, bos); } else { URLUtils.getResponse(getUrl(), getUserName(), getPassword(), bos, null); } bos.flush(); bos.close(); File listFile = new File(listFilePath); if (!listFile.exists()) { throw new IllegalStateException("The list file did not get created"); } if (isLoggingInfo()) { logInfo("Downloaded list file : " + listFile); } List<SuspectFileProcessingStatus> sfpsList = new ArrayList<SuspectFileProcessingStatus>(); String loadType = GeneralConstants.LOAD_TYPE_FULL; String feedType = GeneralConstants.EMPTY_TOKEN; String listName = getListName(); String errorCode = ""; String description = ""; SuspectFileProcessingStatus sfps = getSuspectsLoaderService().storeFileIntoListIncomingDir(listFile, loadType, feedType, listName, errorCode, description); sfpsList.add(sfps); if (isLoggingInfo()) { logInfo("Retrieved list file with SuspectFileProcessingStatus: " + sfps); } return sfpsList; } finally { if (null != bos) { bos.close(); } } } | public static long removePropertyInOpenXMLDocument(String ext, InputStream in, OutputStreamProvider outProvider, String propriete) { in = new BufferedInputStream(in); try { File tempPptx = null; POIXMLDocument doc; if (ext.toLowerCase().equals("docx")) { doc = new XWPFDocument(in); } else if (ext.toLowerCase().equals("xlsx")) { doc = new XSSFWorkbook(in); } else if (ext.toLowerCase().equals("pptx")) { tempPptx = File.createTempFile("temp", "pptx"); OutputStream tempPptxOut = new FileOutputStream(tempPptx); tempPptxOut = new BufferedOutputStream(tempPptxOut); IOUtils.copy(in, tempPptxOut); tempPptxOut.close(); doc = new XSLFSlideShow(tempPptx.getAbsolutePath()); } else { throw new IllegalArgumentException("Writing properties for a " + ext + " file is not supported"); } CoreProperties coreProperties = doc.getProperties().getCoreProperties(); if (propriete.equals(Metadata.TITLE)) { coreProperties.setTitle(""); } else if (propriete.equals(Metadata.AUTHOR)) { coreProperties.setCreator(""); } else if (propriete.equals(Metadata.KEYWORDS)) { coreProperties.getUnderlyingProperties().setKeywordsProperty(""); } else if (propriete.equals(Metadata.COMMENTS)) { coreProperties.setDescription(""); } else if (propriete.equals(Metadata.SUBJECT)) { coreProperties.setSubjectProperty(""); } else if (propriete.equals(Metadata.COMPANY)) { doc.getProperties().getExtendedProperties().getUnderlyingProperties().setCompany(""); } else { org.apache.poi.POIXMLProperties.CustomProperties customProperties = doc.getProperties().getCustomProperties(); if (customProperties.contains(propriete)) { int index = 0; for (CTProperty prop : customProperties.getUnderlyingProperties().getPropertyArray()) { if (prop.getName().equals(propriete)) { customProperties.getUnderlyingProperties().removeProperty(index); break; } index++; } } } in.close(); File tempOpenXMLDocumentFile = File.createTempFile("temp", "tmp"); OutputStream tempOpenXMLDocumentOut = new FileOutputStream(tempOpenXMLDocumentFile); tempOpenXMLDocumentOut = new BufferedOutputStream(tempOpenXMLDocumentOut); doc.write(tempOpenXMLDocumentOut); tempOpenXMLDocumentOut.close(); long length = tempOpenXMLDocumentFile.length(); InputStream tempOpenXMLDocumentIn = new FileInputStream(tempOpenXMLDocumentFile); tempOpenXMLDocumentIn = new BufferedInputStream(tempOpenXMLDocumentIn); OutputStream out = null; try { out = outProvider.getOutputStream(); out = new BufferedOutputStream(out); IOUtils.copy(tempOpenXMLDocumentIn, out); out.flush(); } finally { IOUtils.closeQuietly(out); } if (!FileUtils.deleteQuietly(tempOpenXMLDocumentFile)) { tempOpenXMLDocumentFile.deleteOnExit(); } if (tempPptx != null && !FileUtils.deleteQuietly(tempPptx)) { tempPptx.deleteOnExit(); } return length; } catch (IOException e) { throw new RuntimeException(e); } catch (InvalidFormatException e) { throw new RuntimeException(e); } catch (OpenXML4JException e) { throw new RuntimeException(e); } catch (XmlException e) { throw new RuntimeException(e); } } | 885,273 |
1 | public void criarTopicoQuestao(Questao q, Integer idTopico) throws SQLException { PreparedStatement stmt = null; String sql = "INSERT INTO questao_topico (id_questao, id_disciplina, id_topico) VALUES (?,?,?)"; try { stmt = conexao.prepareStatement(sql); stmt.setInt(1, q.getIdQuestao()); stmt.setInt(2, q.getDisciplina().getIdDisciplina()); stmt.setInt(3, idTopico); stmt.executeUpdate(); conexao.commit(); } catch (SQLException e) { conexao.rollback(); throw e; } } | public boolean crear() { int result = 0; String sql = "insert into ronda" + "(divisionxTorneo_idDivisionxTorneo, fechaRonda, nRonda, estado ) " + "values (?, ?, ?, ?)"; try { connection = conexionBD.getConnection(); connection.setAutoCommit(false); ps = connection.prepareStatement(sql); populatePreparedStatement(unaRonda); result = ps.executeUpdate(); connection.commit(); } catch (SQLException ex) { ex.printStackTrace(); try { connection.rollback(); } catch (SQLException exe) { exe.printStackTrace(); } } finally { conexionBD.close(ps); conexionBD.close(connection); } return (result > 0); } | 885,274 |
1 | public JSONObject getTargetGraph(HttpSession session, JSONObject json) throws JSONException { StringBuffer out = new StringBuffer(); Graph tgt = null; MappingManager manager = (MappingManager) session.getAttribute(RuncibleConstants.MAPPING_MANAGER.key()); try { tgt = manager.getTargetGraph(); if (tgt != null) { FlexGraphViewFactory factory = new FlexGraphViewFactory(); factory.setColorScheme(ColorSchemes.ORANGES); factory.visit(tgt); GraphView view = factory.getGraphView(); GraphViewRenderer renderer = new FlexGraphViewRenderer(); renderer.setGraphView(view); InputStream xmlStream = renderer.renderGraphView(); StringWriter writer = new StringWriter(); IOUtils.copy(xmlStream, writer); writer.close(); System.out.println(writer.toString()); out.append(writer.toString()); } else { out.append("No target graph loaded."); } } catch (Exception e) { return JSONUtils.SimpleJSONError("Cannot load target graph: " + e.getMessage()); } return JSONUtils.SimpleJSONResponse(out.toString()); } | public String doAdd(ActionMapping mapping, ActionForm form, HttpServletRequest request, HttpServletResponse response) throws Exception { if (logger.isDebugEnabled()) { logger.debug("doAdd(ActionMapping, ActionForm, HttpServletRequest, HttpServletResponse) - start"); } t_information_EditMap editMap = new t_information_EditMap(); try { t_information_Form vo = null; vo = (t_information_Form) form; vo.setCompany(vo.getCounty()); if ("����".equals(vo.getInfo_type())) { vo.setInfo_level(null); vo.setAlert_level(null); } String str_postFIX = ""; int i_p = 0; editMap.add(vo); try { logger.info("����˾�鱨��"); String[] mobiles = request.getParameterValues("mobiles"); vo.setMobiles(mobiles); SMSService.inforAlert(vo); } catch (Exception e) { logger.error("doAdd(ActionMapping, ActionForm, HttpServletRequest, HttpServletResponse)", e); } String filename = vo.getFile().getFileName(); if (null != filename && !"".equals(filename)) { FormFile file = vo.getFile(); String realpath = getServlet().getServletContext().getRealPath("/"); realpath = realpath.replaceAll("\\\\", "/"); String inforId = vo.getId(); String rootFilePath = getServlet().getServletContext().getRealPath(request.getContextPath()); rootFilePath = (new StringBuilder(String.valueOf(rootFilePath))).append(UploadFileOne.strPath).toString(); String strAppend = (new StringBuilder(String.valueOf(UUIDGenerator.nextHex()))).append(UploadFileOne.getFileType(file)).toString(); if (file.getFileSize() != 0) { file.getInputStream(); String name = file.getFileName(); i_p = file.getFileName().lastIndexOf("."); str_postFIX = file.getFileName().substring(i_p, file.getFileName().length()); String fullPath = realpath + "attach/" + strAppend + str_postFIX; t_attach attach = new t_attach(); attach.setAttach_fullname(fullPath); attach.setAttach_name(name); attach.setInfor_id(Integer.parseInt(inforId)); attach.setInsert_day(new Date()); attach.setUpdate_day(new Date()); t_attach_EditMap attachEdit = new t_attach_EditMap(); attachEdit.add(attach); File sysfile = new File(fullPath); if (!sysfile.exists()) { sysfile.createNewFile(); } java.io.OutputStream out = new FileOutputStream(sysfile); org.apache.commons.io.IOUtils.copy(file.getInputStream(), out); out.close(); } } } catch (HibernateException e) { logger.error("doAdd(ActionMapping, ActionForm, HttpServletRequest, HttpServletResponse)", e); ActionErrors errors = new ActionErrors(); errors.add("org.apache.struts.action.GLOBAL_ERROR", new ActionError("error.database.save", e.toString())); saveErrors(request, errors); e.printStackTrace(); request.setAttribute("t_information_Form", form); if (logger.isDebugEnabled()) { logger.debug("doAdd(ActionMapping, ActionForm, HttpServletRequest, HttpServletResponse) - end"); } return "addpage"; } if (logger.isDebugEnabled()) { logger.debug("doAdd(ActionMapping, ActionForm, HttpServletRequest, HttpServletResponse) - end"); } return "aftersave"; } | 885,275 |
1 | public void run() { try { IOUtils.copy(is, os); os.flush(); } catch (IOException ioe) { logger.error("Unable to copy", ioe); } finally { IOUtils.closeQuietly(is); IOUtils.closeQuietly(os); } } | public boolean backupFile(File oldFile, File newFile) { boolean isBkupFileOK = false; FileChannel sourceChannel = null; FileChannel targetChannel = null; try { sourceChannel = new FileInputStream(oldFile).getChannel(); targetChannel = new FileOutputStream(newFile).getChannel(); targetChannel.transferFrom(sourceChannel, 0, sourceChannel.size()); } catch (IOException e) { logger.log(Level.SEVERE, "IO exception occurred while copying file", e); } finally { if ((newFile != null) && (newFile.exists()) && (newFile.length() > 0)) { isBkupFileOK = true; } try { if (sourceChannel != null) { sourceChannel.close(); } if (targetChannel != null) { targetChannel.close(); } } catch (IOException e) { logger.info("closing channels failed"); } } return isBkupFileOK; } | 885,276 |
1 | public static void copia(File nombreFuente, File nombreDestino) throws IOException { FileInputStream fis = new FileInputStream(nombreFuente); FileOutputStream fos = new FileOutputStream(nombreDestino); FileChannel canalFuente = fis.getChannel(); FileChannel canalDestino = fos.getChannel(); canalFuente.transferTo(0, canalFuente.size(), canalDestino); fis.close(); fos.close(); } | public static void copy(File src, File dest) throws IOException { if (!src.exists()) { throw new IOException(StaticUtils.format(OStrings.getString("LFC_ERROR_FILE_DOESNT_EXIST"), new Object[] { src.getAbsolutePath() })); } FileInputStream fis = new FileInputStream(src); dest.getParentFile().mkdirs(); FileOutputStream fos = new FileOutputStream(dest); byte[] b = new byte[BUFSIZE]; int readBytes; while ((readBytes = fis.read(b)) > 0) fos.write(b, 0, readBytes); fis.close(); fos.close(); } | 885,277 |
1 | @Test public void testWriteAndRead() throws Exception { JCFSFileServer server = new JCFSFileServer(defaultTcpPort, defaultTcpAddress, defaultUdpPort, defaultUdpAddress, dir, 0, 0); JCFS.configureDiscovery(defaultUdpAddress, defaultUdpPort); try { server.start(); RFile file = new RFile("testreadwrite.txt"); RFileOutputStream out = new RFileOutputStream(file); out.write("test".getBytes("utf-8")); out.close(); RFileInputStream in = new RFileInputStream(file); byte[] buffer = new byte[4]; int readCount = in.read(buffer); in.close(); assertEquals(4, readCount); String resultRead = new String(buffer, "utf-8"); assertEquals("test", resultRead); } finally { server.stop(); } } | private static void cut() { File inputFile = new File(inputFileName); BufferedReader in = null; try { in = new BufferedReader(new InputStreamReader(new FileInputStream(inputFile), inputCharSet)); } catch (FileNotFoundException e) { System.err.print("Invalid File Name!"); System.err.flush(); System.exit(1); } catch (UnsupportedEncodingException e) { System.err.print("Invalid Char Set Name!"); System.err.flush(); System.exit(1); } switch(cutMode) { case charMode: { int outputFileIndex = 1; char[] readBuf = new char[charPerFile]; while (true) { int readCount = 0; try { readCount = in.read(readBuf); } catch (IOException e) { System.err.println("Read IO Error!"); System.err.flush(); System.exit(1); } if (-1 == readCount) break; else { try { int ppos = inputFileName.lastIndexOf("."); String prefixInputFileName = inputFileName.substring(0, ppos); String postfixInputFileName = "html"; DecimalFormat outputFileIndexFormat = new DecimalFormat("0000"); File outputFile = new File(prefixInputFileName + "-" + outputFileIndexFormat.format(outputFileIndex) + "." + postfixInputFileName); BufferedWriter out = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(outputFile), outputCharSet)); out.write(readBuf, 0, readCount); out.flush(); out.close(); outputFileIndex++; } catch (IOException e) { System.err.println("Write IO Error!"); System.err.flush(); System.exit(1); } } } break; } case lineMode: { boolean isFileEnd = false; int outputFileIndex = 1; while (!isFileEnd) { try { int ppos = inputFileName.lastIndexOf("."); String prefixInputFileName = inputFileName.substring(0, ppos); String postfixInputFileName = inputFileName.substring(ppos + 1); DecimalFormat outputFileIndexFormat = new DecimalFormat("0000"); File outputFile = new File(prefixInputFileName + outputFileIndexFormat.format(outputFileIndex) + "." + postfixInputFileName); PrintStream out = new PrintStream(new FileOutputStream(outputFile), false, outputCharSet); int p = 0; while (p < linePerFile) { String line = in.readLine(); if (null == line) { isFileEnd = true; break; } out.println(line); ++p; } out.flush(); out.close(); } catch (IOException e) { System.err.println("Write IO Error!"); System.err.flush(); System.exit(1); } ++outputFileIndex; } break; } case htmlMode: { boolean isFileEnd = false; int outputFileIndex = 1; int ppos = inputFileName.lastIndexOf("."); String prefixInputFileName = inputFileName.substring(0, ppos); String postfixInputFileName = "html"; DecimalFormat df = new DecimalFormat("0000"); while (!isFileEnd) { try { File outputFile = new File(prefixInputFileName + "-" + df.format(outputFileIndex) + "." + postfixInputFileName); PrintStream out = new PrintStream(new FileOutputStream(outputFile), false, outputCharSet); out.println("<html><head><title>" + prefixInputFileName + "-" + df.format(outputFileIndex) + "</title>" + "<meta http-equiv=\"Content-Type\"" + " content=\"text/html; " + "charset=" + outputCharSet + "\" />" + "<link rel =\"stylesheet\" " + "type=\"text/css\" " + "href=\"stylesheet.css\" />" + "</head><body><div id=\"content\">"); int p = 0; while (p < pPerFile) { String line = in.readLine(); if (null == line) { isFileEnd = true; break; } if (line.length() > 0) out.println("<p>" + line + "</p>"); ++p; } out.println("</div><a href=\"" + prefixInputFileName + "-" + df.format(outputFileIndex + 1) + "." + postfixInputFileName + "\">NEXT</a></body></html>"); out.flush(); out.close(); } catch (IOException e) { System.err.println("Write IO Error!"); System.err.flush(); System.exit(1); } ++outputFileIndex; } try { File indexFile = new File("index.html"); PrintStream out = new PrintStream(new FileOutputStream(indexFile), false, outputCharSet); out.println("<html><head><title>" + "Index" + "</title>" + "<meta http-equiv=\"Content-Type\"" + " content=\"text/html; " + "charset=" + outputCharSet + "\" />" + "<link rel =\"stylesheet\" " + "type=\"text/css\" " + "href=\"stylesheet.css\" />" + "</head><body><h2>" + htmlTitle + "</h2><div id=\"content\"><ul>"); for (int i = 1; i < outputFileIndex; i++) { out.println("<li><a href=\"" + prefixInputFileName + "-" + df.format(i) + "." + postfixInputFileName + "\">" + df.format(i) + "</a></li>"); } out.println("</ul></body></html>"); out.flush(); out.close(); } catch (IOException e) { System.err.println("Write IO Error!"); System.err.flush(); System.exit(1); } break; } } } | 885,278 |
0 | public static String calcHA1(String algorithm, String username, String realm, String password, String nonce, String cnonce) throws FatalException, MD5DigestException { MD5Encoder encoder = new MD5Encoder(); MessageDigest md5 = null; try { md5 = MessageDigest.getInstance("MD5"); } catch (Exception e) { throw new FatalException(e); } if (username == null || realm == null) { throw new MD5DigestException(WebdavStatus.SC_BAD_REQUEST, "username or realm"); } if (password == null) { System.err.println("No password has been provided"); throw new IllegalStateException(); } if (algorithm != null && algorithm.equals("MD5-sess") && (nonce == null || cnonce == null)) { throw new MD5DigestException(WebdavStatus.SC_BAD_REQUEST, "nonce or cnonce"); } md5.update((username + ":" + realm + ":" + password).getBytes()); if (algorithm != null && algorithm.equals("MD5-sess")) { md5.update((":" + nonce + ":" + cnonce).getBytes()); } return encoder.encode(md5.digest()); } | @Override public void execute(String[] args) throws Exception { Options cmdLineOptions = getCommandOptions(); try { GnuParser parser = new GnuParser(); CommandLine commandLine = parser.parse(cmdLineOptions, TolvenPlugin.getInitArgs()); String srcRepositoryURLString = commandLine.getOptionValue(CMD_LINE_SRC_REPOSITORYURL_OPTION); Plugins libraryPlugins = RepositoryMetadata.getRepositoryPlugins(new URL(srcRepositoryURLString)); String srcPluginId = commandLine.getOptionValue(CMD_LINE_SRC_PLUGIN_ID_OPTION); PluginDetail plugin = RepositoryMetadata.getPluginDetail(srcPluginId, libraryPlugins); if (plugin == null) { throw new RuntimeException("Could not locate plugin: " + srcPluginId + " in repository: " + srcRepositoryURLString); } String srcPluginVersionString = commandLine.getOptionValue(CMD_LINE_SRC_PLUGIN_VERSION_OPTION); PluginVersionDetail srcPluginVersion = null; if (srcPluginVersion == null) { srcPluginVersion = RepositoryMetadata.getLatestVersion(plugin); } else { srcPluginVersion = RepositoryMetadata.getPluginVersionDetail(srcPluginVersionString, plugin); } if (plugin == null) { throw new RuntimeException("Could not find a plugin version for: " + srcPluginId + " in repository: " + srcRepositoryURLString); } String destPluginId = commandLine.getOptionValue(CMD_LINE_DEST_PLUGIN_ID_OPTION); FileUtils.deleteDirectory(getPluginTmpDir()); URL srcURL = new URL(srcPluginVersion.getUri()); File newPluginDir = new File(getPluginTmpDir(), destPluginId); try { InputStream in = null; FileOutputStream out = null; File tmpZip = new File(getPluginTmpDir(), new File(srcURL.getFile()).getName()); try { in = srcURL.openStream(); out = new FileOutputStream(tmpZip); IOUtils.copy(in, out); TolvenZip.unzip(tmpZip, newPluginDir); } finally { if (in != null) { in.close(); } if (out != null) { out.close(); } if (tmpZip != null) { tmpZip.delete(); } } File pluginManifestFile = new File(newPluginDir, "tolven-plugin.xml"); if (!pluginManifestFile.exists()) { throw new RuntimeException(srcURL.toExternalForm() + "has no plugin manifest"); } Plugin pluginManifest = RepositoryMetadata.getPlugin(pluginManifestFile.toURI().toURL()); pluginManifest.setId(destPluginId); String destPluginVersion = commandLine.getOptionValue(CMD_LINE_DEST_PLUGIN_VERSION_OPTION); if (destPluginVersion == null) { destPluginVersion = DEFAULT_DEST_VERSION; } pluginManifest.setVersion(destPluginVersion); String pluginManifestXML = RepositoryMetadata.getPluginManifest(pluginManifest); FileUtils.writeStringToFile(pluginManifestFile, pluginManifestXML); File pluginFragmentManifestFile = new File(newPluginDir, "tolven-plugin-fragment.xml"); if (pluginFragmentManifestFile.exists()) { PluginFragment pluginManifestFragment = RepositoryMetadata.getPluginFragment(pluginFragmentManifestFile.toURI().toURL()); Requires requires = pluginManifestFragment.getRequires(); if (requires == null) { throw new RuntimeException("No <requires> detected for plugin fragment in: " + srcURL.toExternalForm()); } if (requires.getImport().size() != 1) { throw new RuntimeException("There should be only one import for plugin fragment in: " + srcURL.toExternalForm()); } requires.getImport().get(0).setPluginId(destPluginId); requires.getImport().get(0).setPluginVersion(destPluginVersion); String pluginFragmentManifestXML = RepositoryMetadata.getPluginFragmentManifest(pluginManifestFragment); FileUtils.writeStringToFile(pluginFragmentManifestFile, pluginFragmentManifestXML); } String destDirname = commandLine.getOptionValue(CMD_LINE_DEST_DIR_OPTION); File destDir = new File(destDirname); File destZip = new File(destDir, destPluginId + "-" + destPluginVersion + ".zip"); destDir.mkdirs(); TolvenZip.zip(newPluginDir, destZip); } finally { if (newPluginDir != null) { FileUtils.deleteDirectory(newPluginDir); } } } catch (ParseException ex) { HelpFormatter formatter = new HelpFormatter(); formatter.printHelp(getClass().getName(), cmdLineOptions); throw new RuntimeException("Could not parse command line for: " + getClass().getName(), ex); } } | 885,279 |
0 | private void getRdfResponse(StringBuilder sb, String url) { try { String inputLine = null; BufferedReader reader = new BufferedReader(new InputStreamReader(new URL(url).openStream())); while ((inputLine = reader.readLine()) != null) { sb.append(inputLine); } reader.close(); } catch (MalformedURLException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } } | private void saveScore(int score) { String name = JOptionPane.showInputDialog(this, "Skriv navn for å komme på highscorelisten!", "Lagre score!", JOptionPane.INFORMATION_MESSAGE); URL url; try { url = new URL("http://129.177.17.51:8080/GuestBook/TheOnlyServlet?name=" + name + "&score=" + score); URLConnection urlConnection = url.openConnection(); urlConnection.connect(); urlConnection.getInputStream(); BrowserControl.openUrl("http://129.177.17.51:8080/GuestBook/TheOnlyServlet"); } catch (MalformedURLException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } } | 885,280 |
1 | public static String MD5Encode(String password) { MessageDigest messageDigest; try { messageDigest = MessageDigest.getInstance("MD5"); messageDigest.update(password.getBytes()); final byte[] digest = messageDigest.digest(); final StringBuilder buf = new StringBuilder(digest.length * 2); final char[] HEX_DIGITS = { '0', '1', '2', '3', '4', '5', '6', '7', '8', '9', 'a', 'b', 'c', 'd', 'e', 'f' }; for (int j = 0; j < digest.length; j++) { buf.append(HEX_DIGITS[(digest[j] >> 4) & 0x0f]); buf.append(HEX_DIGITS[digest[j] & 0x0f]); } return buf.toString(); } catch (NoSuchAlgorithmException e) { return password; } } | private RemoteObject createRemoteObject(final VideoEntry videoEntry, final RemoteContainer container) throws RemoteException { MessageDigest instance; try { instance = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { throw new RemoteException(StatusCreator.newStatus("Error creating MD5", e)); } StringWriter sw = new StringWriter(); YouTubeMediaGroup mediaGroup = videoEntry.getMediaGroup(); if (mediaGroup != null) { if (mediaGroup.getDescription() != null) { sw.append(mediaGroup.getDescription().getPlainTextContent()); } List<MediaCategory> keywordsGroup = mediaGroup.getCategories(); StringBuilder sb = new StringBuilder(); if (keywordsGroup != null) { for (MediaCategory mediaCategory : keywordsGroup) { sb.append(mediaCategory.getContent()); } } } instance.update(sw.toString().getBytes()); RemoteObject remoteVideo = InfomngmntFactory.eINSTANCE.createRemoteObject(); remoteVideo.setHash(asHex(instance.digest())); remoteVideo.setId(SiteInspector.getId(videoEntry.getHtmlLink().getHref())); remoteVideo.setName(videoEntry.getTitle().getPlainText()); remoteVideo.setRepositoryTypeObjectId(KEY_VIDEO); remoteVideo.setWrappedObject(videoEntry); setInternalUrl(remoteVideo, container); return remoteVideo; } | 885,281 |
0 | public void elimina(Pedido pe) throws errorSQL, errorConexionBD { System.out.println("GestorPedido.elimina()"); int id = pe.getId(); String sql; Statement stmt = null; try { gd.begin(); sql = "DELETE FROM pedido WHERE id=" + id; System.out.println("Ejecutando: " + sql); stmt = gd.getConexion().createStatement(); stmt.executeUpdate(sql); System.out.println("executeUpdate"); gd.commit(); System.out.println("commit"); stmt.close(); } catch (SQLException e) { gd.rollback(); throw new errorSQL(e.toString()); } catch (errorConexionBD e) { System.err.println("Error en GestorPedido.elimina(): " + e); } catch (errorSQL e) { System.err.println("Error en GestorPedido.elimina(): " + e); } } | public static String harvestForUser(Node userNode, String alias, Boolean all) { FTPClient client = new FTPClient(); OutputStream outStream = null; Calendar filterCal = Calendar.getInstance(); filterCal.set(Calendar.DAY_OF_MONTH, filterCal.get(Calendar.DAY_OF_MONTH) - 1); Date aDayAgo = filterCal.getTime(); String outputRecord = ""; try { Session session = CustomSystemSession.create(r); client.connect(ftpHostname); client.login(ftpUsername, ftpPassword); FTPFile[] users = client.listFiles(); if (users != null) { for (FTPFile user : users) { String userName = user.getName(); if (alias.equals(userName)) { outputRecord += "Found account " + userName + ".\n"; client.changeWorkingDirectory("/" + userName + "/"); FTPFile[] experiments = client.listFiles(); if (experiments != null && userNode != null) { for (FTPFile experiment : experiments) { String experimentName = experiment.getName(); outputRecord += "Exploring " + userName + "/" + experimentName + ".\n"; client.changeWorkingDirectory("/" + userName + "/" + experimentName + "/"); FTPFile[] datasets = client.listFiles(); if (datasets != null) { for (FTPFile dataset : datasets) { String datasetName = dataset.getName(); outputRecord += "Exploring " + userName + "/" + experimentName + "/" + datasetName + ".\n"; client.changeWorkingDirectory("/" + userName + "/" + experimentName + "/" + datasetName + "/"); Date collectionDate = dataset.getTimestamp().getTime(); if (collectionDate.after(aDayAgo) || all) { FTPFile[] images = client.listFiles(); if (images != null) { for (FTPFile image : images) { outputRecord += processImage(userName, experimentName, datasetName, collectionDate, image, client, userNode, session); } } } } } } } } } } client.logout(); } catch (IOException ioe) { log.info("Error communicating with FTP server."); log.error("Error communicating with FTP server.", ioe); ioe.printStackTrace(); } catch (RepositoryException ioe) { log.info("Error communicating with repository."); log.error("Error communicating with repository.", ioe); ioe.printStackTrace(); } finally { IOUtils.closeQuietly(outStream); try { client.disconnect(); } catch (IOException e) { log.error("Problem disconnecting from FTP server", e); } } return outputRecord; } | 885,282 |
0 | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | public void run() { try { URL url = new URL("http://www.sourceforge.net/projects/beobachter/files/beobachter_version.html"); InputStreamReader reader = new InputStreamReader(url.openStream()); BufferedReader buffer = new BufferedReader(reader); String version = buffer.readLine(); buffer.close(); reader.close(); int serverVersion = Integer.valueOf(version.replaceAll("\\.", "")).intValue(); int currentVersion = Integer.valueOf(Constants.APP_VERSION.replaceAll("\\.", "")).intValue(); if (serverVersion > currentVersion) { StringBuilder sb = new StringBuilder(); sb.append(MessageFormat.format(Translator.t("New_version_0_available"), new Object[] { version })).append(Constants.LINE_SEP).append(Constants.LINE_SEP); sb.append(Translator.t("Please_visit_us_on_sourceforge")).append(Constants.LINE_SEP); DialogFactory.showInformationMessage(MainGUI.instance, sb.toString()); } else if (serverVersion <= currentVersion) { DialogFactory.showInformationMessage(MainGUI.instance, Translator.t("There_are_not_updates_available")); } } catch (Exception e) { DialogFactory.showErrorMessage(MainGUI.instance, Translator.t("Unable_to_fetch_server_information")); } } | 885,283 |
1 | public static void copyFileByNIO(File in, File out) throws IOException { FileChannel sourceChannel = new FileInputStream(in).getChannel(); FileChannel destinationChannel = new FileOutputStream(out).getChannel(); sourceChannel.transferTo(0, sourceChannel.size(), destinationChannel); sourceChannel.close(); destinationChannel.close(); } | @Override public int onPut(Operation operation) { synchronized (MuleObexRequestHandler.connections) { MuleObexRequestHandler.connections++; if (logger.isDebugEnabled()) { logger.debug("Connection accepted, total number of connections: " + MuleObexRequestHandler.connections); } } int result = ResponseCodes.OBEX_HTTP_OK; try { headers = operation.getReceivedHeaders(); if (!this.maxFileSize.equals(ObexServer.UNLIMMITED_FILE_SIZE)) { Long fileSize = (Long) headers.getHeader(HeaderSet.LENGTH); if (fileSize == null) { result = ResponseCodes.OBEX_HTTP_LENGTH_REQUIRED; } if (fileSize > this.maxFileSize) { result = ResponseCodes.OBEX_HTTP_REQ_TOO_LARGE; } } if (result != ResponseCodes.OBEX_HTTP_OK) { InputStream in = operation.openInputStream(); ByteArrayOutputStream out = new ByteArrayOutputStream(); IOUtils.copy(in, out); in.close(); out.close(); data = out.toByteArray(); if (interrupted) { data = null; result = ResponseCodes.OBEX_HTTP_GONE; } } return result; } catch (IOException e) { return ResponseCodes.OBEX_HTTP_UNAVAILABLE; } finally { synchronized (this) { this.notify(); } synchronized (MuleObexRequestHandler.connections) { MuleObexRequestHandler.connections--; if (logger.isDebugEnabled()) { logger.debug("Connection closed, total number of connections: " + MuleObexRequestHandler.connections); } } } } | 885,284 |
0 | public static String hash(String password) { try { MessageDigest digest = MessageDigest.getInstance(digestAlgorithm); digest.update(password.getBytes(charset)); byte[] rawHash = digest.digest(); return new String(Hex.encodeHex(rawHash)); } catch (Exception e) { throw new RuntimeException(e); } } | public static IProject CreateJavaProject(String name, IPath classpath) throws CoreException { // Create and Open New Project in Workspace IWorkspace workspace = ResourcesPlugin.getWorkspace(); IWorkspaceRoot root = workspace.getRoot(); IProject project = root.getProject(name); project.create(null); project.open(null); // Add Java Nature to new Project IProjectDescription desc = project.getDescription(); desc.setNatureIds(new String[] { JavaCore.NATURE_ID}); project.setDescription(desc, null); // Get Java Project Object IJavaProject javaProj = JavaCore.create(project); // Set Output Folder IFolder binDir = project.getFolder("bin"); IPath binPath = binDir.getFullPath(); javaProj.setOutputLocation(binPath, null); // Set Project's Classpath IClasspathEntry cpe = JavaCore.newLibraryEntry(classpath, null, null); javaProj.setRawClasspath(new IClasspathEntry[] {cpe}, null); return project; } | 885,285 |
1 | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | @Override protected void copyContent(String filename) throws IOException { InputStream in = null; try { in = LOADER.getResourceAsStream(RES_PKG + filename); ByteArrayOutputStream out = new ByteArrayOutputStream(); IOUtils.copy(in, out); setResponseData(out.toByteArray()); } finally { if (in != null) { in.close(); } } } | 885,286 |
0 | private void refresh(String val) { HttpHost targetHost = new HttpHost("localhost", 8080, "http"); DefaultHttpClient httpclient = new DefaultHttpClient(); BasicHttpContext localcontext = new BasicHttpContext(); String searchString = val.trim().replaceAll("\\s+", "+"); HttpGet httpget = new HttpGet("/geoserver/rest/gazetteer-search/result.json?q=" + searchString); try { HttpResponse response = httpclient.execute(targetHost, httpget, localcontext); HttpEntity entity = response.getEntity(); String responseText = ""; if (entity != null) { responseText = new String(EntityUtils.toByteArray(entity)); } else { responseText = "Fail"; } JSONObject responseJson = JSONObject.fromObject(responseText); JSONObject search = responseJson.getJSONObject("org.ala.rest.GazetteerSearch"); JSONArray results = search.getJSONObject("results").getJSONArray("org.ala.rest.SearchResultItem"); Iterator it = getItems().iterator(); for (int i = 0; i < results.size(); i++) { String itemString = (String) results.getJSONObject(i).get("name"); if (it != null && it.hasNext()) { ((Comboitem) it.next()).setLabel(itemString); } else { it = null; new Comboitem(itemString).setParent(this); } } while (it != null && it.hasNext()) { it.next(); it.remove(); } } catch (Exception e) { } } | public static ResultSet execute(String commands) { ResultSet rs = null; BufferedReader reader = new BufferedReader(new StringReader(commands)); String sqlCommand = null; Connection conn = ConnPool.getConnection(); try { Statement stmt = conn.createStatement(); while ((sqlCommand = reader.readLine()) != null) { sqlCommand = sqlCommand.toLowerCase().trim(); if (sqlCommand.equals("") || sqlCommand.startsWith("#")) { continue; } if (dmaLogger.isInfoEnabled(SqlExecutor.class)) { dmaLogger.logInfo("Executing SQL: " + sqlCommand, SqlExecutor.class); } long currentTimeMillis = System.currentTimeMillis(); if (sqlCommand.startsWith("select")) { rs = stmt.executeQuery(sqlCommand); } else { stmt.executeUpdate(sqlCommand); } dmaLogger.logInfo(DateUtil.getElapsedTime("SQL execution of " + sqlCommand + " took: ", (System.currentTimeMillis() - currentTimeMillis)), SqlExecutor.class); } if (rs == null) { stmt.close(); } return rs; } catch (SQLException e) { try { conn.rollback(); } catch (SQLException se) { } throw new RuntimeException("Execution of " + sqlCommand + " failed:" + e.getMessage(), e); } catch (IOException e) { try { conn.rollback(); } catch (SQLException se) { } throw new RuntimeException("Execution of " + sqlCommand + " failed:", e); } finally { ConnPool.releaseConnection(conn); } } | 885,287 |
0 | public Configuration(URL url) { InputStream in = null; try { load(in = url.openStream()); } catch (Exception e) { throw new RuntimeException("Could not load configuration from " + url, e); } finally { if (in != null) { try { in.close(); } catch (IOException ignore) { } } } } | public void removeBodyPart(int iPart) throws MessagingException, ArrayIndexOutOfBoundsException { if (DebugFile.trace) { DebugFile.writeln("Begin DBMimeMultipart.removeBodyPart(" + String.valueOf(iPart) + ")"); DebugFile.incIdent(); } DBMimeMessage oMsg = (DBMimeMessage) getParent(); DBFolder oFldr = ((DBFolder) oMsg.getFolder()); Statement oStmt = null; ResultSet oRSet = null; String sDisposition = null, sFileName = null; boolean bFound; try { oStmt = oFldr.getConnection().createStatement(ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY); if (DebugFile.trace) DebugFile.writeln("Statement.executeQuery(SELECT " + DB.id_disposition + "," + DB.file_name + " FROM " + DB.k_mime_parts + " WHERE " + DB.gu_mimemsg + "='" + oMsg.getMessageGuid() + "' AND " + DB.id_part + "=" + String.valueOf(iPart) + ")"); oRSet = oStmt.executeQuery("SELECT " + DB.id_disposition + "," + DB.file_name + " FROM " + DB.k_mime_parts + " WHERE " + DB.gu_mimemsg + "='" + oMsg.getMessageGuid() + "' AND " + DB.id_part + "=" + String.valueOf(iPart)); bFound = oRSet.next(); if (bFound) { sDisposition = oRSet.getString(1); if (oRSet.wasNull()) sDisposition = "inline"; sFileName = oRSet.getString(2); } oRSet.close(); oRSet = null; oStmt.close(); oStmt = null; if (!bFound) { if (DebugFile.trace) DebugFile.decIdent(); throw new MessagingException("Part not found"); } if (!sDisposition.equals("reference") && !sDisposition.equals("pointer")) { if (DebugFile.trace) DebugFile.decIdent(); throw new MessagingException("Only parts with reference or pointer disposition can be removed from a message"); } else { if (sDisposition.equals("reference")) { try { File oRef = new File(sFileName); if (oRef.exists()) oRef.delete(); } catch (SecurityException se) { if (DebugFile.trace) DebugFile.writeln("SecurityException " + sFileName + " " + se.getMessage()); if (DebugFile.trace) DebugFile.decIdent(); throw new MessagingException("SecurityException " + sFileName + " " + se.getMessage(), se); } } oStmt = oFldr.getConnection().createStatement(); if (DebugFile.trace) DebugFile.writeln("Statement.executeUpdate(DELETE FROM " + DB.k_mime_parts + " WHERE " + DB.gu_mimemsg + "='" + oMsg.getMessageGuid() + "' AND " + DB.id_part + "=" + String.valueOf(iPart) + ")"); oStmt.executeUpdate("DELETE FROM " + DB.k_mime_parts + " WHERE " + DB.gu_mimemsg + "='" + oMsg.getMessageGuid() + "' AND " + DB.id_part + "=" + String.valueOf(iPart)); oStmt.close(); oStmt = null; oFldr.getConnection().commit(); } } catch (SQLException sqle) { if (oRSet != null) { try { oRSet.close(); } catch (Exception ignore) { } } if (oStmt != null) { try { oStmt.close(); } catch (Exception ignore) { } } try { oFldr.getConnection().rollback(); } catch (Exception ignore) { } if (DebugFile.trace) DebugFile.decIdent(); throw new MessagingException(sqle.getMessage(), sqle); } if (DebugFile.trace) { DebugFile.decIdent(); DebugFile.writeln("End DBMimeMultipart.removeBodyPart()"); } } | 885,288 |
0 | private void updateService(int nodeID, String interfaceIP, int serviceID, String notifyFlag) throws ServletException { Connection connection = null; final DBUtils d = new DBUtils(getClass()); try { connection = Vault.getDbConnection(); d.watch(connection); PreparedStatement stmt = connection.prepareStatement(UPDATE_SERVICE); d.watch(stmt); stmt.setString(1, notifyFlag); stmt.setInt(2, nodeID); stmt.setString(3, interfaceIP); stmt.setInt(4, serviceID); stmt.executeUpdate(); } catch (SQLException e) { try { connection.rollback(); } catch (SQLException sqlEx) { throw new ServletException("Couldn't roll back update to service " + serviceID + " on interface " + interfaceIP + " notify as " + notifyFlag + " in the database.", sqlEx); } throw new ServletException("Error when updating to service " + serviceID + " on interface " + interfaceIP + " notify as " + notifyFlag + " in the database.", e); } finally { d.cleanUp(); } } | public ASDGrammarReader(String fileName, boolean includeCoords) throws IOException, MalformedURLException { includePixelCoords = includeCoords; fileName = fileName.trim(); urlConnection = null; urlStream = null; if (fileName.substring(0, 5).equalsIgnoreCase("http:")) { URL fileURL = new URL(fileName); urlConnection = (HttpURLConnection) fileURL.openConnection(); urlStream = urlConnection.getInputStream(); reader = new ASDTokenReader(new BufferedReader(new InputStreamReader(urlStream))); } else reader = new ASDTokenReader(new FileReader(fileName)); } | 885,289 |
0 | private static ISimpleChemObjectReader createReader(URL url, String urlString, String type) throws CDKException { if (type == null) { type = "mol"; } ISimpleChemObjectReader cor = null; cor = new MDLV2000Reader(getReader(url), Mode.RELAXED); try { ReaderFactory factory = new ReaderFactory(); cor = factory.createReader(getReader(url)); if (cor instanceof CMLReader) { cor = new CMLReader(urlString); } } catch (IOException ioExc) { } catch (Exception exc) { } if (cor == null) { if (type.equals(JCPFileFilter.cml) || type.equals(JCPFileFilter.xml)) { cor = new CMLReader(urlString); } else if (type.equals(JCPFileFilter.sdf)) { cor = new MDLV2000Reader(getReader(url)); } else if (type.equals(JCPFileFilter.mol)) { cor = new MDLV2000Reader(getReader(url)); } else if (type.equals(JCPFileFilter.inchi)) { try { cor = new INChIReader(new URL(urlString).openStream()); } catch (MalformedURLException e) { } catch (IOException e) { } } else if (type.equals(JCPFileFilter.rxn)) { cor = new MDLRXNV2000Reader(getReader(url)); } else if (type.equals(JCPFileFilter.smi)) { cor = new SMILESReader(getReader(url)); } } if (cor == null) { throw new CDKException(GT._("Could not determine file format")); } if (cor instanceof MDLV2000Reader) { try { BufferedReader in = new BufferedReader(getReader(url)); String line; while ((line = in.readLine()) != null) { if (line.equals("$$$$")) { String message = GT._("It seems you opened a mol or sdf" + " file containing several molecules. " + "Only the first one will be shown"); JOptionPane.showMessageDialog(null, message, GT._("sdf-like file"), JOptionPane.INFORMATION_MESSAGE); break; } } } catch (IOException ex) { } } return cor; } | private String getRenderedBody(String spec) throws Exception { log.entering(Rss2MailTask.class.getName(), "getRenderedBody"); final URL url = new URL(spec); final HttpURLConnection connection = (HttpURLConnection) url.openConnection(); connection.connect(); final InputStream inputStream = connection.getInputStream(); final BufferedReader reader = new BufferedReader(new InputStreamReader(inputStream)); String line = ""; final StringBuffer bf = new StringBuffer(); while (line != null) { line = reader.readLine(); if (line != null) { bf.append(line); } } log.exiting(Rss2MailTask.class.getName(), "getRenderedBody"); return bf.toString(); } | 885,290 |
0 | private void copyIntoFile(String resource, File output) throws IOException { FileOutputStream out = null; InputStream in = null; try { out = FileUtils.openOutputStream(output); in = GroovyInstanceTest.class.getResourceAsStream(resource); IOUtils.copy(in, out); } finally { IOUtils.closeQuietly(out); IOUtils.closeQuietly(in); } } | public void readURL() throws Exception { URL url = new URL("http://www.google.com"); URLConnection c = url.openConnection(); Map<String, List<String>> headers = c.getHeaderFields(); for (String s : headers.keySet()) { System.out.println(s + ": " + headers.get(s)); } BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); String line = reader.readLine(); while (line != null) { System.out.println(line); line = reader.readLine(); } reader.close(); } | 885,291 |
0 | protected N save(String sql, Object[] args) { Connection conn = null; PreparedStatement pstmt = null; ResultSet rs = null; try { conn = JdbcUtils.getConnection(); conn.setAutoCommit(false); pstmt = conn.prepareStatement(sql, Statement.RETURN_GENERATED_KEYS); this.setParameters(pstmt, args); pstmt.executeUpdate(); conn.commit(); conn.setAutoCommit(true); rs = pstmt.getGeneratedKeys(); return (N) rs.getObject(1); } catch (SQLException e) { try { if (conn != null) { conn.rollback(); conn.setAutoCommit(true); } } catch (SQLException ex) { ex.printStackTrace(); } throw new JdbcDaoException(e.getMessage(), e); } finally { JdbcUtils.free(rs, pstmt, conn); } } | public void run() { runCounter++; try { LOGGER.info("Fetching feed [" + runCounter + "] " + _feedInfo); DefaultHttpClient httpClient = new DefaultHttpClient(); HttpContext localContext = new BasicHttpContext(); disableSSLCertificateChecking(httpClient); if (_proxy != null && _feedInfo.getUseProxy()) { LOGGER.info("Configuring proxy " + _proxy); httpClient.getParams().setParameter(ConnRoutePNames.DEFAULT_PROXY, _proxy); } if (_feedInfo.getUsername() != null) { Credentials credentials; if (_feedInfo.getUsername().contains("/")) { String username = _feedInfo.getUsername().substring(_feedInfo.getUsername().indexOf("/") + 1); String domain = _feedInfo.getUsername().substring(0, _feedInfo.getUsername().indexOf("/")); String workstation = InetAddress.getLocalHost().getHostName(); LOGGER.info("Configuring NT credentials : username=[" + username + "] domain=[" + domain + "] workstation=[" + workstation + "]"); credentials = new NTCredentials(username, _feedInfo.getPassword(), workstation, domain); httpClient.getAuthSchemes().register("ntlm", new NTLMSchemeFactory()); httpClient.getCredentialsProvider().setCredentials(AuthScope.ANY, credentials); } else { credentials = new UsernamePasswordCredentials(_feedInfo.getUsername(), _feedInfo.getPassword()); LOGGER.info("Configuring Basic credentials " + credentials); httpClient.getCredentialsProvider().setCredentials(AuthScope.ANY, credentials); } } if (_feedInfo.getCookie() != null) { BasicClientCookie cookie = new BasicClientCookie(_feedInfo.getCookie().getName(), _feedInfo.getCookie().getValue()); cookie.setVersion(0); if (_feedInfo.getCookie().getDomain() != null) cookie.setDomain(_feedInfo.getCookie().getDomain()); if (_feedInfo.getCookie().getPath() != null) cookie.setPath(_feedInfo.getCookie().getPath()); LOGGER.info("Adding cookie " + cookie); CookieStore cookieStore = new BasicCookieStore(); cookieStore.addCookie(cookie); localContext.setAttribute(ClientContext.COOKIE_STORE, cookieStore); } HttpGet httpget = new HttpGet(_feedInfo.getUrl()); HttpResponse response = httpClient.execute(httpget, localContext); LOGGER.info("Response Status : " + response.getStatusLine()); LOGGER.debug("Headers : " + Arrays.toString(response.getAllHeaders())); if (response.getStatusLine().getStatusCode() != HttpStatus.SC_OK) { LOGGER.error("Request was unsuccessful for " + _feedInfo + " : " + response.getStatusLine()); } else { SyndFeedInput input = new SyndFeedInput(); XmlReader reader = new XmlReader(response.getEntity().getContent()); SyndFeed feed = input.build(reader); if (feed.getTitle() != null) _feedInfo.setTitle(feed.getTitle()); LOGGER.debug("Feed : " + new SyndFeedOutput().outputString(feed)); LOGGER.info("Feed [" + feed.getTitle() + "] contains " + feed.getEntries().size() + " entries"); @SuppressWarnings("unchecked") List<SyndEntry> entriesList = feed.getEntries(); Collections.sort(entriesList, new SyndEntryPublishedDateComparator()); for (SyndEntry entry : entriesList) { if (VisitedEntries.getInstance().isAlreadyVisited(entry.getUri())) { LOGGER.debug("Already received " + entry.getUri()); } else { _feedInfo.addEntry(entry); LOGGER.debug("New entry " + entry.toString()); _entryDisplay.displayEntry(feed, entry, firstRun); } } LOGGER.info("Completing entries for feed " + feed.getTitle()); if (firstRun) firstRun = false; } } catch (IllegalArgumentException e) { LOGGER.error(e.getMessage(), e); } catch (FeedException e) { LOGGER.error(e.getMessage(), e); } catch (IOException e) { LOGGER.error(e.getMessage(), e); } catch (KeyManagementException e) { LOGGER.error(e.getMessage(), e); } catch (NoSuchAlgorithmException e) { LOGGER.error(e.getMessage(), e); } } | 885,292 |
0 | public static void retrieveAttachments(RemoteAttachment[] attachments, String id, String projectName, String key, SimpleDateFormat formatter, java.sql.Connection connect) { if (attachments.length != 0) { for (RemoteAttachment attachment : attachments) { attachmentAuthor = attachment.getAuthor(); if (attachment.getCreated() != null) { attachmentCreated = formatter.format(attachment.getCreated().getTime()); } attachmentFileName = attachment.getFilename(); attachmentFileSize = attachment.getFilesize(); attachmentId = attachment.getId(); attachmentMimeType = attachment.getMimetype(); if (attachmentMimeType.startsWith("text")) { URL attachmentUrl; try { attachmentUrl = new URL("https://issues.apache.org/jira/secure/attachment/" + attachmentId + "/" + attachmentFileName); urlConnection = (HttpURLConnection) attachmentUrl.openConnection(); urlConnection.connect(); serverCode = urlConnection.getResponseCode(); } catch (MalformedURLException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } if (serverCode == 200) { actual = new File("../attachments/" + projectName + "/" + key); if (!actual.exists()) { actual.mkdirs(); } attachmentPath = "../attachments/" + projectName + "/" + key + "/" + attachmentFileName; BufferedInputStream bis; try { bis = new BufferedInputStream(urlConnection.getInputStream()); BufferedOutputStream bos = new BufferedOutputStream(new FileOutputStream(attachmentPath)); byte[] b = new byte[1024]; int len = -1; while ((len = bis.read(b)) != -1) { if (len == 1024) { bos.write(b); } else { bos.write(b, 0, len); } } bos.close(); bis.close(); insertAttachment(connect, id); } catch (IOException e) { e.printStackTrace(); } catch (SQLException e) { e.printStackTrace(); } } } } } } | private void bubbleSort(int values[]) { int len = values.length - 1; for (int i = 0; i < len; i++) { for (int j = 0; j < len - i; j++) { if (values[j] > values[j + 1]) { int tmp = values[j]; values[j] = values[j + 1]; values[j + 1] = tmp; } } } } | 885,293 |
0 | public static void saveNetFile(String destUrl, String fileName) throws IOException { FileOutputStream fos = null; BufferedInputStream bis = null; HttpURLConnection httpUrl = null; int BUFFER_SIZE = 2048; URL url = null; byte[] buf = new byte[BUFFER_SIZE]; int size = 0; url = new URL(destUrl); httpUrl = (HttpURLConnection) url.openConnection(); httpUrl.connect(); bis = new BufferedInputStream(httpUrl.getInputStream()); java.io.File dest = new java.io.File(fileName).getParentFile(); if (!dest.exists()) dest.mkdirs(); fos = new FileOutputStream(fileName); while ((size = bis.read(buf)) != -1) fos.write(buf, 0, size); fos.close(); bis.close(); httpUrl.disconnect(); } | public static void readConfigFromResource(String resname) throws Exception { URL url = ConfigXMLReader.class.getClassLoader().getResource(resname); if (url == null) throw new FileNotFoundException("Couldn't find the config resource:" + resname); System.out.println("Reading config from resource: " + url.toString()); readConfig(url.openStream()); } | 885,294 |
1 | public static void transfer(FileInputStream fileInStream, FileOutputStream fileOutStream) throws IOException { FileChannel fileInChannel = fileInStream.getChannel(); FileChannel fileOutChannel = fileOutStream.getChannel(); long fileInSize = fileInChannel.size(); try { long transferred = fileInChannel.transferTo(0, fileInSize, fileOutChannel); if (transferred != fileInSize) { throw new IOException("transfer() did not complete"); } } finally { ensureClose(fileInChannel, fileOutChannel); } } | @Override public void fileUpload(UploadEvent uploadEvent) { FileOutputStream tmpOutStream = null; try { tmpUpload = File.createTempFile("projectImport", ".xml"); tmpOutStream = new FileOutputStream(tmpUpload); IOUtils.copy(uploadEvent.getInputStream(), tmpOutStream); panel.setGeneralMessage("Project file " + uploadEvent.getFileName() + " uploaded and ready for import."); } catch (Exception e) { panel.setGeneralMessage("Could not upload file: " + e); } finally { if (tmpOutStream != null) { IOUtils.closeQuietly(tmpOutStream); } } } | 885,295 |
0 | public HttpResponse execute(HttpUriRequest request, HttpContext context) throws IOException { URI uri = request.getURI(); String original = uri.toString(); UrlRules rules = UrlRules.getRules(mResolver); UrlRules.Rule rule = rules.matchRule(original); String rewritten = rule.apply(original); if (rewritten == null) { Log.w(TAG, "Blocked by " + rule.mName + ": " + original); throw new BlockedRequestException(rule); } else if (rewritten == original) { return executeWithoutRewriting(request, context); } try { uri = new URI(rewritten); } catch (URISyntaxException e) { throw new RuntimeException("Bad URL from rule: " + rule.mName, e); } RequestWrapper wrapper = wrapRequest(request); wrapper.setURI(uri); request = wrapper; if (LOCAL_LOGV) Log.v(TAG, "Rule " + rule.mName + ": " + original + " -> " + rewritten); return executeWithoutRewriting(request, context); } | public InputStream getFtpInputStream() throws IOException { try { URL url = getURL(); URLConnection urlc = url.openConnection(); return urlc.getInputStream(); } catch (MalformedURLException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } return null; } | 885,296 |
0 | public GEItem lookup(final int itemID) { try { URL url = new URL(GrandExchange.HOST + GrandExchange.GET + itemID); BufferedReader br = new BufferedReader(new InputStreamReader(url.openStream())); String input; boolean exists = false; int i = 0; double[] values = new double[4]; String name = "", examine = ""; while ((input = br.readLine()) != null) { if (input.contains("<div class=\"brown_box main_ge_page") && !exists) { if (!input.contains("vertically_spaced")) { return null; } exists = true; br.readLine(); br.readLine(); name = br.readLine(); } else if (input.contains("<img id=\"item_image\" src=\"")) { examine = br.readLine(); } else if (input.matches("(?i).+ (price|days):</b> .+")) { values[i] = parse(input); i++; } else if (input.matches("<div id=\"legend\">")) break; } return new GEItem(name, examine, itemID, values); } catch (IOException ignore) { } return null; } | @Override public void run() { log.debug("Now running...."); log.debug("Current env. variables:"); try { this.infoNotifiers("Environment parameters after modifications:"); this.logEnvironment(); this.infoNotifiers("Dump thread will now run..."); this.endNotifiers(); this.process = this.pb.start(); this.process.waitFor(); if (this.process.exitValue() != 0) { this.startNotifiers(); this.infoNotifiers("Dump Failed. Return status: " + this.process.exitValue()); this.endNotifiers(); return; } List<String> cmd = new LinkedList<String>(); cmd.add("gzip"); cmd.add(info.getDumpFileName()); File basePath = this.pb.directory(); this.pb = new ProcessBuilder(cmd); this.pb.directory(basePath); log.debug("Executing: " + StringUtils.join(cmd.iterator(), ' ')); this.process = this.pb.start(); this.process.waitFor(); if (this.process.exitValue() != 0) { this.startNotifiers(); this.infoNotifiers("Dump GZip Failed. Return status: " + this.process.exitValue()); this.endNotifiers(); return; } info.setDumpFileName(info.getDumpFileName() + ".gz"); info.setMD5SumFileName(info.getDumpFileName() + ".md5sum"); cmd = new LinkedList<String>(); cmd.add("md5sum"); cmd.add("-b"); cmd.add(info.getDumpFileName()); log.debug("Executing: " + StringUtils.join(cmd.iterator(), ' ')); this.pb = new ProcessBuilder(cmd); this.pb.directory(basePath); this.process = this.pb.start(); BufferedOutputStream md5sumFileOut = new BufferedOutputStream(new FileOutputStream(basePath.getAbsolutePath() + File.separatorChar + info.getMD5SumFileName())); IOUtils.copy(this.process.getInputStream(), md5sumFileOut); this.process.waitFor(); md5sumFileOut.flush(); md5sumFileOut.close(); if (this.process.exitValue() != 0) { this.startNotifiers(); this.infoNotifiers("Dump GZip MD5Sum Failed. Return status: " + this.process.exitValue()); this.endNotifiers(); return; } else { this.startNotifiers(); this.infoNotifiers("Dump, gzip and md5sum sucessfuly completed."); this.endNotifiers(); } } catch (IOException e) { String message = "IOException launching command: " + e.getMessage(); log.error(message, e); throw new IllegalStateException(message, e); } catch (InterruptedException e) { String message = "InterruptedException launching command: " + e.getMessage(); log.error(message, e); throw new IllegalStateException(message, e); } catch (IntegrationException e) { String message = "IntegrationException launching command: " + e.getMessage(); log.error(message, e); throw new IllegalStateException(message, e); } } | 885,297 |
0 | protected N save(String sql, Object[] args) { Connection conn = null; PreparedStatement pstmt = null; ResultSet rs = null; try { conn = JdbcUtils.getConnection(); conn.setAutoCommit(false); pstmt = conn.prepareStatement(sql, Statement.RETURN_GENERATED_KEYS); this.setParameters(pstmt, args); pstmt.executeUpdate(); conn.commit(); conn.setAutoCommit(true); rs = pstmt.getGeneratedKeys(); return (N) rs.getObject(1); } catch (SQLException e) { try { if (conn != null) { conn.rollback(); conn.setAutoCommit(true); } } catch (SQLException ex) { ex.printStackTrace(); } throw new JdbcDaoException(e.getMessage(), e); } finally { JdbcUtils.free(rs, pstmt, conn); } } | public void compressImage(InputStream input, OutputStream output, DjatokaEncodeParam params) throws DjatokaException { if (params == null) params = new DjatokaEncodeParam(); File inputFile = null; try { inputFile = File.createTempFile("tmp", ".tif"); IOUtils.copyStream(input, new FileOutputStream(inputFile)); if (params.getLevels() == 0) { ImageRecord dim = ImageRecordUtils.getImageDimensions(inputFile.getAbsolutePath()); params.setLevels(ImageProcessingUtils.getLevelCount(dim.getWidth(), dim.getHeight())); dim = null; } } catch (IOException e1) { logger.error("Unexpected file format; expecting uncompressed TIFF", e1); throw new DjatokaException("Unexpected file format; expecting uncompressed TIFF"); } String out = STDOUT; File winOut = null; if (isWindows) { try { winOut = File.createTempFile("pipe_", ".jp2"); } catch (IOException e) { logger.error(e, e); throw new DjatokaException(e); } out = winOut.getAbsolutePath(); } String command = getKduCompressCommand(inputFile.getAbsolutePath(), out, params); logger.debug("compressCommand: " + command); Runtime rt = Runtime.getRuntime(); try { final Process process = rt.exec(command, envParams, new File(env)); if (out.equals(STDOUT)) { IOUtils.copyStream(process.getInputStream(), output); } else if (isWindows) { FileInputStream fis = new FileInputStream(out); IOUtils.copyStream(fis, output); fis.close(); } process.waitFor(); if (process != null) { String errorCheck = null; try { errorCheck = new String(IOUtils.getByteArray(process.getErrorStream())); } catch (Exception e1) { logger.error(e1, e1); } process.getInputStream().close(); process.getOutputStream().close(); process.getErrorStream().close(); process.destroy(); if (errorCheck != null) throw new DjatokaException(errorCheck); } } catch (IOException e) { logger.error(e, e); throw new DjatokaException(e); } catch (InterruptedException e) { logger.error(e, e); throw new DjatokaException(e); } if (inputFile != null) inputFile.delete(); if (winOut != null) winOut.delete(); } | 885,298 |
0 | private String MD5Sum(String input) { String hashtext = null; try { MessageDigest md = MessageDigest.getInstance("MD5"); md.reset(); md.update(input.getBytes()); byte[] digest = md.digest(); BigInteger bigInt = new BigInteger(1, digest); hashtext = bigInt.toString(16); while (hashtext.length() < 32) { hashtext = "0" + hashtext; } } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } return hashtext; } | private static void checkClients() { try { sendMultiListEntry('l'); } catch (Exception e) { if (Util.getDebugLevel() > 90) e.printStackTrace(); } try { if (CANT_CHECK_CLIENTS != null) KeyboardHero.removeStatus(CANT_CHECK_CLIENTS); URL url = new URL(URL_STR + "?req=clients" + (server != null ? "&port=" + server.getLocalPort() : "")); URLConnection connection = url.openConnection(getProxy()); connection.setRequestProperty("User-Agent", USER_AGENT); BufferedReader bufferedRdr = new BufferedReader(new InputStreamReader(connection.getInputStream())); String ln; if (Util.getDebugLevel() > 30) Util.debug("URL: " + url); while ((ln = bufferedRdr.readLine()) != null) { String[] parts = ln.split(":", 2); if (parts.length < 2) { Util.debug(12, "Line read in checkClients: " + ln); continue; } try { InetSocketAddress address = new InetSocketAddress(parts[0], Integer.parseInt(parts[1])); boolean notFound = true; if (Util.getDebugLevel() > 25) Util.debug("NEW Address: " + address.toString()); synchronized (clients) { Iterator<Client> iterator = clients.iterator(); while (iterator.hasNext()) { final Client client = iterator.next(); if (client.socket.isClosed()) { iterator.remove(); continue; } if (Util.getDebugLevel() > 26 && client.address != null) Util.debug("Address: " + client.address.toString()); if (address.equals(client.address)) { notFound = false; break; } } } if (notFound) { connectClient(address); } } catch (NumberFormatException e) { } } bufferedRdr.close(); } catch (MalformedURLException e) { Util.conditionalError(PORT_IN_USE, "Err_PortInUse"); Util.error(Util.getMsg("Err_CantCheckClients")); } catch (FileNotFoundException e) { Util.error(Util.getMsg("Err_CantCheckClients_Proxy"), Util.getMsg("Err_FileNotFound")); } catch (SocketException e) { Util.error(Util.getMsg("Err_CantCheckClients_Proxy"), e.getLocalizedMessage()); } catch (Exception e) { CANT_CHECK_CLIENTS.setException(e.toString()); KeyboardHero.addStatus(CANT_CHECK_CLIENTS); } } | 885,299 |
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