label int64 0 1 | func1 stringlengths 173 53.1k | func2 stringlengths 173 53.1k | id int64 0 901k |
|---|---|---|---|
0 | private boolean copyFile(File inFile, File outFile) { BufferedReader reader = null; BufferedWriter writer = null; try { reader = new BufferedReader(new FileReader(inFile)); writer = new BufferedWriter(new FileWriter(outFile)); while (reader.ready()) { writer.write(reader.read()); } writer.flush(); } catch (IOException ex) { ex.printStackTrace(); } finally { if (reader != null) { try { reader.close(); } catch (IOException ex) { ex.printStackTrace(); return false; } } if (writer != null) { try { writer.close(); } catch (IOException ex) { return false; } } } return true; } | InputStream createInputStream(FileInfo fi) throws IOException, MalformedURLException { if (fi.inputStream != null) return fi.inputStream; else if (fi.url != null && !fi.url.equals("")) return new URL(fi.url + fi.fileName).openStream(); else { File f = new File(fi.directory + fi.fileName); if (f == null || f.isDirectory()) return null; else { InputStream is = new FileInputStream(f); if (fi.compression >= FileInfo.LZW) is = new RandomAccessStream(is); return is; } } } | 885,400 |
1 | @SuppressWarnings("finally") @Override public String read(EnumSensorType sensorType, Map<String, String> stateMap) { BufferedReader in = null; StringBuffer result = new StringBuffer(); try { URL url = new URL(getUrl()); in = new BufferedReader(new InputStreamReader(url.openStream())); String str; while ((str = in.readLine()) != null) { result.append(str); } } catch (ConnectException ce) { logger.error("MockupStatusCommand excute fail: " + ce.getMessage()); } catch (Exception e) { logger.error("MockupStatusCommand excute fail: " + e.getMessage()); } finally { if (in != null) { try { in.close(); } catch (IOException e) { logger.error("BufferedReader could not be closed", e); } } return result.toString(); } } | private boolean loadSource(URL url) { if (url == null) { if (sourceURL != null) { sourceCodeLinesList.clear(); } return false; } else { if (url.equals(sourceURL)) { return true; } else { sourceCodeLinesList.clear(); try { BufferedReader br = new BufferedReader(new InputStreamReader(url.openStream())); String line; while ((line = br.readLine()) != null) { sourceCodeLinesList.addElement(line.replaceAll("\t", " ")); } br.close(); return true; } catch (IOException e) { System.err.println("Could not load source at " + url); return false; } } } } | 885,401 |
0 | protected static boolean copyFile(File src, File dest) { try { if (!dest.exists()) { dest.createNewFile(); } FileInputStream fis = new FileInputStream(src); FileOutputStream fos = new FileOutputStream(dest); byte[] temp = new byte[1024 * 8]; int readSize = 0; do { readSize = fis.read(temp); fos.write(temp, 0, readSize); } while (readSize == temp.length); temp = null; fis.close(); fos.flush(); fos.close(); } catch (Exception e) { return false; } return true; } | public static byte[] findHead(String url) { byte[] result = new byte[0]; InputStream in = null; try { in = new URL(appendSlash(url)).openStream(); byte[] buffer = new byte[1024]; int len = -1; while ((len = in.read(buffer)) != -1) { byte[] temp = new byte[result.length + len]; System.arraycopy(result, 0, temp, 0, result.length); System.arraycopy(buffer, 0, temp, result.length, len); result = temp; if (DEBUG) { log.debug(String.format("len=%d, result.length=%d", len, result.length)); } if (result.length > 4096) { break; } if (result.length > 1024) { String s = new String(result).replaceAll("\\s+", " "); Matcher m = P_HEAD.matcher(s); if (m.find()) { break; } } } } catch (Exception e) { log.error(e.getMessage(), e); } finally { try { if (null != in) in.close(); } catch (IOException e) { } } return result; } | 885,402 |
1 | static void copyFile(File file, File destDir) { File destFile = new File(destDir, file.getName()); if (destFile.exists() && (!destFile.canWrite())) { throw new SyncException("Cannot overwrite " + destFile + " because " + "it is read-only"); } try { FileInputStream in = new FileInputStream(file); try { FileOutputStream out = new FileOutputStream(destFile); try { byte[] buffer = new byte[BUFFER_SIZE]; int read; while ((read = in.read(buffer)) != -1) { out.write(buffer, 0, read); } } finally { out.close(); } } finally { in.close(); } } catch (IOException e) { throw new SyncException("I/O error copying " + file + " to " + destDir + " (message: " + e.getMessage() + ")", e); } if (!destFile.setLastModified(file.lastModified())) { throw new SyncException("Could not set last modified timestamp " + "of " + destFile); } } | public static void copyFile(File src, File dst) throws IOException { InputStream in = new FileInputStream(src); OutputStream out = new FileOutputStream(dst); byte[] buf = new byte[1024]; int len; while ((len = in.read(buf)) > 0) out.write(buf, 0, len); in.close(); out.close(); } | 885,403 |
0 | private String getMD5Str(String str) { MessageDigest messageDigest = null; try { messageDigest = MessageDigest.getInstance("MD5"); messageDigest.reset(); messageDigest.update(str.getBytes("UTF-8")); } catch (NoSuchAlgorithmException e) { System.out.println("NoSuchAlgorithmException caught!"); System.exit(-1); } catch (UnsupportedEncodingException e) { e.printStackTrace(); } byte[] byteArray = messageDigest.digest(); StringBuffer md5StrBuff = new StringBuffer(); for (int i = 0; i < byteArray.length; i++) { if (Integer.toHexString(0xFF & byteArray[i]).length() == 1) md5StrBuff.append("0").append(Integer.toHexString(0xFF & byteArray[i])); else md5StrBuff.append(Integer.toHexString(0xFF & byteArray[i])); } return md5StrBuff.toString(); } | public void logout(String cookieString) throws NetworkException { HttpClient client = HttpConfig.newInstance(); HttpGet get = new HttpGet(HttpConfig.bbsURL() + HttpConfig.BBS_LOGOUT); if (cookieString != null && cookieString.length() != 0) get.setHeader("Cookie", cookieString); try { HttpResponse response = client.execute(get); if (response != null && response.getEntity() != null) { HTTPUtil.consume(response.getEntity()); } } catch (Exception e) { e.printStackTrace(); throw new NetworkException(e); } } | 885,404 |
0 | static void test() throws SQLException { Connection conn = null; Statement st = null; ResultSet rs = null; try { conn = JdbcUtils.getConnection(); conn.setAutoCommit(false); st = conn.createStatement(); String sql = "update user set money=money-10 where id=15"; st.executeUpdate(sql); sql = "select money from user where id=13"; rs = st.executeQuery(sql); float money = 0.0f; while (rs.next()) { money = rs.getFloat("money"); } if (money > 1000) throw new RuntimeException("�Ѿ��������ֵ��"); sql = "update user set money=money+10 where id=13"; st.executeUpdate(sql); conn.commit(); } catch (SQLException e) { if (conn != null) conn.rollback(); throw e; } finally { JdbcUtils.free(rs, st, conn); } } | public static void bubbleSort(int[] array) { for (int i = 0; i < array.length - 1; i++) { for (int j = 0; j < array.length - i - 1; j++) { if (array[j] > array[j + 1]) { int temp = array[j]; array[j] = array[j + 1]; array[j + 1] = temp; } } System.out.println("��" + (i + 1) + "������"); for (int k = 0; k < array.length; k++) { System.out.print(array[k] + " "); } System.out.println(); } } | 885,405 |
0 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public boolean GetExternalLanguage() { String thisURL, newURL, TheLine; boolean ReadOK = true; int SlashPos = -1; thisURL = getDocumentBase().toString(); SlashPos = thisURL.lastIndexOf("/"); newURL = thisURL.substring(0, (SlashPos + 1)) + "language.txt"; try { URL url = new URL(newURL); try { InputStream TheFile = url.openStream(); try { DataInputStream MyData = new DataInputStream(TheFile); try { while ((TheLine = MyData.readLine()) != null) { if (TheLine.substring(0, 1).compareTo("*") == 0) { if (!ExternalLanguageVariable(TheLine)) { ReadOK = false; break; } } } } catch (Exception e) { System.out.println("Error " + e.toString()); ReadOK = false; } } catch (Exception e) { System.out.println("Error " + e.toString()); ReadOK = false; } } catch (Exception f) { System.out.println("Error " + f.toString()); ReadOK = false; } } catch (Exception g) { System.out.println("Error " + g.toString()); ReadOK = false; } return ReadOK; } | 885,406 |
1 | private static void copy(File source, File dest) throws FileNotFoundException, IOException { FileInputStream input = new FileInputStream(source); FileOutputStream output = new FileOutputStream(dest); System.out.println("Copying " + source + " to " + dest); IOUtils.copy(input, output); output.close(); input.close(); dest.setLastModified(source.lastModified()); } | public byte process(ProcessorContext<PublishRequest> context) throws InterruptedException, ProcessorException { logger.info("MapTileChacheTask:process"); PublishRequest req = context.getItem().getEntity(); if (StringUtils.isEmpty(req.getBackMap())) return TaskState.STATE_TILE_CACHED; final PublicMapPost post; final GenericDAO<PublicMapPost> postDao = DAOFactory.createDAO(PublicMapPost.class); try { ReadOnlyTransaction.beginTransaction(); } catch (DatabaseException e) { logger.error("error", e); throw new ProcessorException(e); } int numCachedTiles = 0; try { List<MapTile> backTiles = new ArrayList<MapTile>(); post = postDao.findUniqueByCriteria(Expression.eq("guid", req.getPostGuid())); final LatLngRectangle bounds = new LatLngRectangle(new LatLngPoint(post.getSWLat(), post.getSWLon()), new LatLngPoint(post.getNELat(), post.getNELon())); final String backMapGuid = "gst"; final XFile dstDir = new XFile(new XFile(Configuration.getInstance().getPublicMapStorage().toString()), backMapGuid); dstDir.mkdir(); for (int z = Math.min(Tile.getOptimalZoom(bounds, 768), 9); z <= 17; z++) { final Tile tileStart = new Tile(bounds.getSouthWest().getLat(), bounds.getSouthWest().getLng(), z); final Tile tileEnd = new Tile(bounds.getNorthEast().getLat(), bounds.getNorthEast().getLng(), z); for (double y = tileEnd.getTileCoord().getY(); y <= tileStart.getTileCoord().getY(); y++) for (double x = tileStart.getTileCoord().getX(); x <= tileEnd.getTileCoord().getX(); x++) { NASAMapTile tile = new NASAMapTile((int) x, (int) y, z); XFile file = new XFile(dstDir, tile.toKeyString()); if (file.exists() && file.isFile()) continue; backTiles.add(tile); } } try { for (MapTile tile : backTiles) { InputStream in = null; OutputStream out = null; final URL url = new URL(tile.getPath()); try { final XFile outFile = new XFile(dstDir, tile.toKeyString()); final URLConnection conn = url.openConnection(); if (conn == null || !conn.getContentType().startsWith("image")) throw new IllegalAccessException("onearth.jpl.nasa.gov service returns non-image file, " + "content-type='" + conn.getContentType() + "'"); in = conn.getInputStream(); if (in != null) { out = new XFileOutputStream(outFile); IOUtils.copy(in, out); } else throw new IllegalStateException("opened stream is null"); } finally { if (out != null) { out.flush(); out.close(); } if (in != null) in.close(); } if (++numCachedTiles % 100 == 0) { logger.info(numCachedTiles + " tiles cached"); } } } catch (Throwable e) { logger.error("map tile caching has failed: ", e); throw new ProcessorException(e); } } catch (ProcessorException e) { logger.error("map tile caching has failed: ", e); throw e; } catch (Throwable e) { logger.error("map tile caching has failed: ", e); throw new ProcessorException(e); } finally { ReadOnlyTransaction.closeTransaction(); logger.info(numCachedTiles + " tiles cached"); } return TaskState.STATE_TILE_CACHED; } | 885,407 |
0 | public static void readConfigFromResource(String resname) throws Exception { URL url = ConfigXMLReader.class.getClassLoader().getResource(resname); if (url == null) throw new FileNotFoundException("Couldn't find the config resource:" + resname); System.out.println("Reading config from resource: " + url.toString()); readConfig(url.openStream()); } | static void test() throws SQLException { Connection conn = null; Statement st = null; ResultSet rs = null; Savepoint sp = null; try { conn = JdbcUtils.getConnection(); conn.setAutoCommit(false); st = conn.createStatement(); String sql = "update user set money=money-10 where id=1"; st.executeUpdate(sql); sp = conn.setSavepoint(); sql = "update user set money=money-10 where id=3"; st.executeUpdate(sql); sql = "select money from user where id=2"; rs = st.executeQuery(sql); float money = 0.0f; if (rs.next()) { money = rs.getFloat("money"); } if (money > 300) throw new RuntimeException("�Ѿ��������ֵ��"); sql = "update user set money=money+10 where id=2"; st.executeUpdate(sql); conn.commit(); } catch (RuntimeException e) { if (conn != null && sp != null) { conn.rollback(sp); conn.commit(); } throw e; } catch (SQLException e) { if (conn != null) conn.rollback(); throw e; } finally { JdbcUtils.free(rs, st, conn); } } | 885,408 |
1 | private void copy(File from, File to) { if (from.isDirectory()) { File[] files = from.listFiles(); for (int i = 0; i < files.length; i++) { if (files[i].isDirectory()) { File newTo = new File(to.getPath() + File.separator + files[i].getName()); newTo.mkdirs(); copy(files[i], newTo); } else { copy(files[i], to); } } } else { try { to = new File(to.getPath() + File.separator + from.getName()); to.createNewFile(); FileChannel src = new FileInputStream(from).getChannel(); FileChannel dest = new FileOutputStream(to).getChannel(); dest.transferFrom(src, 0, src.size()); dest.close(); src.close(); } catch (FileNotFoundException e) { errorLog(e.toString()); e.printStackTrace(); } catch (IOException e) { errorLog(e.toString()); e.printStackTrace(); } } } | @Override protected void copy(InputStream inputs, OutputStream outputs) throws IOException { if (outputs == null) { throw new NullPointerException(); } if (inputs == null) { throw new NullPointerException(); } ZipOutputStream zipoutputs = null; try { zipoutputs = new ZipOutputStream(outputs); zipoutputs.putNextEntry(new ZipEntry("default")); IOUtils.copy(inputs, zipoutputs); } catch (IOException e) { e.printStackTrace(); throw e; } finally { if (zipoutputs != null) { zipoutputs.close(); } if (inputs != null) { inputs.close(); } } } | 885,409 |
1 | private void tar(FileHolder fileHolder, boolean gzipIt) { byte[] buffer = new byte[BUFFER_SIZE]; int bytes_read; if (fileHolder.selectedFileList.size() == 0) { return; } File tarDestFile = new File(fileHolder.destFiles[0]); try { OutputStream outStream = new FileOutputStream(tarDestFile); if (gzipIt) { outStream = new GZIPOutputStream(outStream); } TarOutputStream tarOutStream = new TarOutputStream(outStream); for (int i = 0; i < fileHolder.selectedFileList.size(); i++) { File selectedFile = fileHolder.selectedFileList.get(i); super.currentObjBeingProcessed = selectedFile; this.inStream = new FileInputStream(selectedFile); TarEntry tarEntry = null; try { tarEntry = new TarEntry(selectedFile, selectedFile.getName()); } catch (InvalidHeaderException e) { errEntry.setThrowable(e); errEntry.setAppContext("tar()"); errEntry.setAppMessage("Error tar'ing: " + selectedFile); logger.logError(errEntry); } tarOutStream.putNextEntry(tarEntry); while ((bytes_read = inStream.read(buffer)) != -1) { tarOutStream.write(buffer, 0, bytes_read); } tarOutStream.closeEntry(); inStream.close(); super.processorSyncFlag.restartWaitUntilFalse(); } tarOutStream.close(); } catch (Exception e) { errEntry.setThrowable(e); errEntry.setAppContext("tar()"); errEntry.setAppMessage("Error tar'ing: " + tarDestFile); logger.logError(errEntry); } } | private void nioBuild() { try { final ByteBuffer buffer = ByteBuffer.allocateDirect(1024 * 4); final FileChannel out = new FileOutputStream(dest).getChannel(); for (File part : parts) { setState(part.getName(), BUILDING); FileChannel in = new FileInputStream(part).getChannel(); while (in.read(buffer) > 0) { buffer.flip(); written += out.write(buffer); buffer.clear(); } in.close(); } out.close(); } catch (Exception e) { e.printStackTrace(); } } | 885,410 |
1 | public static void main(String[] args) throws IOException { ReadableByteChannel in = Channels.newChannel((new FileInputStream("/home/sannies/suckerpunch-distantplanet_h1080p/suckerpunch-distantplanet_h1080p.mov"))); Movie movie = MovieCreator.build(in); in.close(); List<Track> tracks = movie.getTracks(); movie.setTracks(new LinkedList<Track>()); double startTime = 35.000; double endTime = 145.000; boolean timeCorrected = false; for (Track track : tracks) { if (track.getSyncSamples() != null && track.getSyncSamples().length > 0) { if (timeCorrected) { throw new RuntimeException("The startTime has already been corrected by another track with SyncSample. Not Supported."); } startTime = correctTimeToNextSyncSample(track, startTime); endTime = correctTimeToNextSyncSample(track, endTime); timeCorrected = true; } } for (Track track : tracks) { long currentSample = 0; double currentTime = 0; long startSample = -1; long endSample = -1; for (int i = 0; i < track.getDecodingTimeEntries().size(); i++) { TimeToSampleBox.Entry entry = track.getDecodingTimeEntries().get(i); for (int j = 0; j < entry.getCount(); j++) { if (currentTime <= startTime) { startSample = currentSample; } if (currentTime <= endTime) { endSample = currentSample; } else { break; } currentTime += (double) entry.getDelta() / (double) track.getTrackMetaData().getTimescale(); currentSample++; } } movie.addTrack(new CroppedTrack(track, startSample, endSample)); } long start1 = System.currentTimeMillis(); IsoFile out = new DefaultMp4Builder().build(movie); long start2 = System.currentTimeMillis(); FileOutputStream fos = new FileOutputStream(String.format("output-%f-%f.mp4", startTime, endTime)); FileChannel fc = fos.getChannel(); out.getBox(fc); fc.close(); fos.close(); long start3 = System.currentTimeMillis(); System.err.println("Building IsoFile took : " + (start2 - start1) + "ms"); System.err.println("Writing IsoFile took : " + (start3 - start2) + "ms"); System.err.println("Writing IsoFile speed : " + (new File(String.format("output-%f-%f.mp4", startTime, endTime)).length() / (start3 - start2) / 1000) + "MB/s"); } | public static void copyFile(File sourceFile, File destFile) throws IOException { if (!destFile.exists()) { destFile.createNewFile(); } FileChannel source = null; FileChannel destination = null; try { source = new FileInputStream(sourceFile).getChannel(); destination = new FileOutputStream(destFile).getChannel(); destination.transferFrom(source, 0, source.size()); } finally { if (source != null) { source.close(); } if (destination != null) { destination.close(); } } } | 885,411 |
0 | private static ISimpleChemObjectReader createReader(URL url, String urlString, String type) throws CDKException { if (type == null) { type = "mol"; } ISimpleChemObjectReader cor = null; cor = new MDLV2000Reader(getReader(url), Mode.RELAXED); try { ReaderFactory factory = new ReaderFactory(); cor = factory.createReader(getReader(url)); if (cor instanceof CMLReader) { cor = new CMLReader(urlString); } } catch (IOException ioExc) { } catch (Exception exc) { } if (cor == null) { if (type.equals(JCPFileFilter.cml) || type.equals(JCPFileFilter.xml)) { cor = new CMLReader(urlString); } else if (type.equals(JCPFileFilter.sdf)) { cor = new MDLV2000Reader(getReader(url)); } else if (type.equals(JCPFileFilter.mol)) { cor = new MDLV2000Reader(getReader(url)); } else if (type.equals(JCPFileFilter.inchi)) { try { cor = new INChIReader(new URL(urlString).openStream()); } catch (MalformedURLException e) { } catch (IOException e) { } } else if (type.equals(JCPFileFilter.rxn)) { cor = new MDLRXNV2000Reader(getReader(url)); } else if (type.equals(JCPFileFilter.smi)) { cor = new SMILESReader(getReader(url)); } } if (cor == null) { throw new CDKException(GT._("Could not determine file format")); } if (cor instanceof MDLV2000Reader) { try { BufferedReader in = new BufferedReader(getReader(url)); String line; while ((line = in.readLine()) != null) { if (line.equals("$$$$")) { String message = GT._("It seems you opened a mol or sdf" + " file containing several molecules. " + "Only the first one will be shown"); JOptionPane.showMessageDialog(null, message, GT._("sdf-like file"), JOptionPane.INFORMATION_MESSAGE); break; } } } catch (IOException ex) { } } return cor; } | @Override void execute(Connection conn, Component parent, String context, ProgressMonitor progressBar, ProgressWrapper progressWrapper) throws Exception { Statement statement = null; try { conn.setAutoCommit(false); statement = conn.createStatement(); String deleteSql = getDeleteSql(m_compositionId); statement.executeUpdate(deleteSql); conn.commit(); s_compostionCache.delete(new Integer(m_compositionId)); } catch (SQLException ex) { try { conn.rollback(); } catch (SQLException e) { e.printStackTrace(); } throw ex; } finally { if (statement != null) { statement.close(); } } } | 885,412 |
1 | public static Boolean decompress(File source, File destination) { FileOutputStream outputStream; ZipInputStream inputStream; try { outputStream = null; inputStream = new ZipInputStream(new FileInputStream(source)); int read; byte buffer[] = new byte[BUFFER_SIZE]; ZipEntry zipEntry; while ((zipEntry = inputStream.getNextEntry()) != null) { if (zipEntry.isDirectory()) new File(destination, zipEntry.getName()).mkdirs(); else { File fileEntry = new File(destination, zipEntry.getName()); fileEntry.getParentFile().mkdirs(); outputStream = new FileOutputStream(fileEntry); while ((read = inputStream.read(buffer, 0, BUFFER_SIZE)) != -1) { outputStream.write(buffer, 0, read); } outputStream.flush(); outputStream.close(); } } inputStream.close(); } catch (Exception oException) { return false; } return true; } | public void update() { if (!updatable) { Main.fenetre().erreur(Fenetre.OLD_VERSION); return; } try { Main.fenetre().update(); Element remoteRoot = new SAXBuilder().build(xml).getRootElement(); addPackages = new HashMap<Integer, PackageVersion>(); Iterator<?> iterElem = remoteRoot.getChildren().iterator(); while (iterElem.hasNext()) { PackageVersion pack = new PackageVersion((Element) iterElem.next()); addPackages.put(pack.id(), pack); } removePackages = new HashMap<Integer, PackageVersion>(); iterElem = root.getChildren("package").iterator(); while (iterElem.hasNext()) { PackageVersion pack = new PackageVersion((Element) iterElem.next()); int id = pack.id(); if (!addPackages.containsKey(id)) { removePackages.put(id, pack); } else if (addPackages.get(id).version().equals(pack.version())) { addPackages.remove(id); } else { addPackages.get(id).ecrase(); } } Iterator<PackageVersion> iterPack = addPackages.values().iterator(); while (iterPack.hasNext()) { install(iterPack.next()); } iterPack = removePackages.values().iterator(); while (iterPack.hasNext()) { remove(iterPack.next()); } if (offline) { Runtime.getRuntime().addShutdownHook(new AddPackage(xml, "versions.xml")); Main.fenetre().erreur(Fenetre.UPDATE_TERMINE_RESTART); } else { File oldXML = new File("versions.xml"); oldXML.delete(); oldXML.createNewFile(); FileChannel out = new FileOutputStream(oldXML).getChannel(); FileChannel in = new FileInputStream(xml).getChannel(); in.transferTo(0, in.size(), out); in.close(); out.close(); xml.delete(); if (restart) { Main.fenetre().erreur(Fenetre.UPDATE_TERMINE_RESTART); } else { Main.updateVersion(); } } } catch (Exception e) { Main.fenetre().erreur(Fenetre.ERREUR_UPDATE, e); } } | 885,413 |
0 | private void displayDiffResults() throws IOException { File outFile = File.createTempFile("diff", ".htm"); outFile.deleteOnExit(); FileOutputStream outStream = new FileOutputStream(outFile); BufferedWriter out = new BufferedWriter(new OutputStreamWriter(outStream)); out.write("<html><head><title>LOC Differences</title>\n" + SCRIPT + "</head>\n" + "<body bgcolor='#ffffff'>\n" + "<div onMouseOver=\"window.defaultStatus='Metrics'\">\n"); if (addedTable.length() > 0) { out.write("<table border><tr><th>Files Added:</th>" + "<th>Add</th><th>Type</th></tr>"); out.write(addedTable.toString()); out.write("</table><br><br>"); } if (modifiedTable.length() > 0) { out.write("<table border><tr><th>Files Modified:</th>" + "<th>Base</th><th>Del</th><th>Mod</th><th>Add</th>" + "<th>Total</th><th>Type</th></tr>"); out.write(modifiedTable.toString()); out.write("</table><br><br>"); } if (deletedTable.length() > 0) { out.write("<table border><tr><th>Files Deleted:</th>" + "<th>Del</th><th>Type</th></tr>"); out.write(deletedTable.toString()); out.write("</table><br><br>"); } out.write("<table name=METRICS BORDER>\n"); if (modifiedTable.length() > 0 || deletedTable.length() > 0) { out.write("<tr><td>Base: </td><td>"); out.write(Long.toString(base)); out.write("</td></tr>\n<tr><td>Deleted: </td><td>"); out.write(Long.toString(deleted)); out.write("</td></tr>\n<tr><td>Modified: </td><td>"); out.write(Long.toString(modified)); out.write("</td></tr>\n<tr><td>Added: </td><td>"); out.write(Long.toString(added)); out.write("</td></tr>\n<tr><td>New & Changed: </td><td>"); out.write(Long.toString(added + modified)); out.write("</td></tr>\n"); } out.write("<tr><td>Total: </td><td>"); out.write(Long.toString(total)); out.write("</td></tr>\n</table></div>"); redlinesOut.close(); out.flush(); InputStream redlines = new FileInputStream(redlinesTempFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = redlines.read(buffer)) != -1) outStream.write(buffer, 0, bytesRead); outStream.write("</BODY></HTML>".getBytes()); outStream.close(); Browser.launch(outFile.toURL().toString()); } | public Document transform(URL url) throws IOException { Document doc = null; try { InputStream in = url.openStream(); ByteArrayOutputStream baos = new ByteArrayOutputStream(); Tidy tidy = new Tidy(); tidy.setShowWarnings(false); tidy.setXmlOut(true); tidy.setXmlPi(false); tidy.setDocType("auto"); tidy.setXHTML(false); tidy.setRawOut(true); tidy.setNumEntities(true); tidy.setQuiet(true); tidy.setFixComments(true); tidy.setIndentContent(true); tidy.setCharEncoding(org.w3c.tidy.Configuration.ASCII); DOMBuilder docBuilder = new DOMBuilder(); doc = docBuilder.build(tidy.parseDOM(in, baos)); String result = "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n" + baos.toString(); in.close(); baos.close(); doc = XMLHelper.parseXMLFromString(result); } catch (IOException ioEx) { throw ioEx; } catch (XMLHelperException xmlEx) { xmlEx.printStackTrace(); } return doc; } | 885,414 |
1 | void extractEnsemblCoords(String geneviewLink) { try { URL connectURL = new URL(geneviewLink); InputStream urlStream = connectURL.openStream(); BufferedReader reader = new BufferedReader(new InputStreamReader(urlStream)); String line; while ((line = reader.readLine()) != null) { if (line.indexOf("View gene in genomic location") != -1) { line = line.substring(line.indexOf("contigview?")); String chr, start, stop; chr = line.substring(line.indexOf("chr=") + 4); chr = chr.substring(0, chr.indexOf("&")); start = line.substring(line.indexOf("vc_start=") + 9); start = start.substring(0, start.indexOf("&")); stop = line.substring(line.indexOf("vc_end=") + 7); stop = stop.substring(0, stop.indexOf("\"")); String selString; for (int s = 0; s < selPanel.chrField.getModel().getSize(); s++) { if (chr.equals(selPanel.chrField.getModel().getElementAt(s))) { selPanel.chrField.setSelectedIndex(s); break; } } selPanel.setStart(Integer.parseInt(start)); selPanel.setStop(Integer.parseInt(stop)); selPanel.refreshButton.doClick(); break; } } } catch (Exception e) { System.out.println("Problems retrieving Geneview from Ensembl"); e.printStackTrace(); } } | private Object[] retrieveSecondURL(URL url, RSLink link) { link.setStatus(RSLink.STATUS_WAITING); Object[] result = new Object[2]; HttpURLConnection httpConn = null; BufferedReader inr = null; DataOutputStream outs = null; Pattern mirrorLinePattern = Pattern.compile("'<input.+checked.+type=\"radio\".+name=\"mirror\".+\\\\'.+\\\\'"); Pattern mirrorUrlPattern = Pattern.compile("\\\\'.+\\\\'"); Pattern counterPattern = Pattern.compile("var c=[0-9]+;"); Pattern counterIntPattern = Pattern.compile("[0-9]+"); try { String line = null; String urlLine = null; Integer counter = null; String postData = URLEncoder.encode("dl.start", "UTF-8") + "=" + URLEncoder.encode("Free", "UTF-8"); httpConn = (HttpURLConnection) url.openConnection(); httpConn.setRequestMethod("POST"); httpConn.setRequestProperty("Content-Type", "application/x-www-form-urlencoded"); httpConn.setRequestProperty("Content-Length", "" + Integer.toString(postData.getBytes().length)); httpConn.setRequestProperty("Content-Language", "en-US"); httpConn.setDoOutput(true); httpConn.setDoInput(true); outs = new DataOutputStream(httpConn.getOutputStream()); outs.writeBytes(postData); outs.flush(); inr = new BufferedReader(new InputStreamReader(httpConn.getInputStream())); Matcher matcher = null; while ((line = inr.readLine()) != null) { matcher = mirrorLinePattern.matcher(line); if (matcher.find()) { matcher = mirrorUrlPattern.matcher(line); if (matcher.find()) { urlLine = matcher.group().substring(2, matcher.group().length() - 2); result[0] = new URL(urlLine); } } matcher = counterPattern.matcher(line); if (matcher.find()) { matcher = counterIntPattern.matcher(line); if (matcher.find()) { counter = new Integer(matcher.group()); result[1] = counter; } } } } catch (IOException ex) { log("I/O Exception!"); } finally { try { if (outs != null) outs.close(); if (inr != null) inr.close(); } catch (IOException ex) { JOptionPane.showMessageDialog(null, "Can not close some connections:\n" + ex.getMessage(), "ERROR", JOptionPane.ERROR_MESSAGE); } if (httpConn != null) httpConn.disconnect(); link.setStatus(RSLink.STATUS_NOTHING); return result; } } | 885,415 |
0 | public UserAgentContext getUserAgentContext() { return new UserAgentContext() { public HttpRequest createHttpRequest() { return new HttpRequest() { private byte[] bytes; private Vector<ReadyStateChangeListener> readyStateChangeListeners = new Vector<ReadyStateChangeListener>(); public void abort() { } public void addReadyStateChangeListener(ReadyStateChangeListener readyStateChangeListener) { readyStateChangeListeners.add(readyStateChangeListener); } public String getAllResponseHeaders() { return null; } public int getReadyState() { return bytes != null ? STATE_COMPLETE : STATE_UNINITIALIZED; } public byte[] getResponseBytes() { return bytes; } public String getResponseHeader(String arg0) { return null; } public Image getResponseImage() { return bytes != null ? Toolkit.getDefaultToolkit().createImage(bytes) : null; } public String getResponseText() { return new String(bytes); } public Document getResponseXML() { return null; } public int getStatus() { return 200; } public String getStatusText() { return "OK"; } public void open(String method, String url) { open(method, url, false); } public void open(String method, URL url) { open(method, url, false); } public void open(String mehod, URL url, boolean async) { try { URLConnection connection = url.openConnection(); bytes = new byte[connection.getContentLength()]; InputStream inputStream = connection.getInputStream(); inputStream.read(bytes); inputStream.close(); for (ReadyStateChangeListener readyStateChangeListener : readyStateChangeListeners) { readyStateChangeListener.readyStateChanged(); } } catch (IOException e) { } } public void open(String method, String url, boolean async) { open(method, URLHelper.createURL(url), async); } public void open(String method, String url, boolean async, String arg3) { open(method, URLHelper.createURL(url), async); } public void open(String method, String url, boolean async, String arg3, String arg4) { open(method, URLHelper.createURL(url), async); } }; } public String getAppCodeName() { return null; } public String getAppMinorVersion() { return null; } public String getAppName() { return null; } public String getAppVersion() { return null; } public String getBrowserLanguage() { return null; } public String getCookie(URL arg0) { return null; } public String getPlatform() { return null; } public int getScriptingOptimizationLevel() { return 0; } public Policy getSecurityPolicy() { return null; } public String getUserAgent() { return null; } public boolean isCookieEnabled() { return false; } public boolean isMedia(String arg0) { return false; } public boolean isScriptingEnabled() { return false; } public void setCookie(URL arg0, String arg1) { } }; } | public static void writeInputStreamToFile(final InputStream stream, final File target) { long size = 0; FileOutputStream fileOut; try { fileOut = new FileOutputStream(target); size = IOUtils.copyLarge(stream, fileOut); } catch (FileNotFoundException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } if (log.isInfoEnabled()) { log.info("Wrote " + size + " bytes to " + target.getAbsolutePath()); } else { System.out.println("Wrote " + size + " bytes to " + target.getAbsolutePath()); } } | 885,416 |
1 | @Override public String toString() { if (byteArrayOutputStream == null) return "<Unparsed binary data: Content-Type=" + getHeader("Content-Type") + " >"; String charsetName = getCharsetName(); if (charsetName == null) charsetName = "ISO-8859-1"; try { if (unzip) { GZIPInputStream gzipInputStream = new GZIPInputStream(new ByteArrayInputStream(byteArrayOutputStream.toByteArray())); ByteArrayOutputStream unzippedResult = new ByteArrayOutputStream(); IOUtils.copy(gzipInputStream, unzippedResult); return unzippedResult.toString(charsetName); } else { return byteArrayOutputStream.toString(charsetName); } } catch (UnsupportedEncodingException e) { throw new OutputException(e); } catch (IOException e) { throw new OutputException(e); } } | public static void copyFromFileToFileUsingNIO(File inputFile, File outputFile) throws FileNotFoundException, IOException { FileChannel inputChannel = new FileInputStream(inputFile).getChannel(); FileChannel outputChannel = new FileOutputStream(outputFile).getChannel(); try { inputChannel.transferTo(0, inputChannel.size(), outputChannel); } catch (IOException e) { throw e; } finally { if (inputChannel != null) inputChannel.close(); if (outputChannel != null) outputChannel.close(); } } | 885,417 |
0 | public void xtestURL2() throws Exception { URL url = new URL(IOTest.URL); InputStream inputStream = url.openStream(); OutputStream outputStream = new FileOutputStream("C:/Temp/testURL2.mp4"); IOUtils.copy(inputStream, outputStream); inputStream.close(); outputStream.close(); } | public void delUser(User user) throws SQLException, IOException, ClassNotFoundException { String dbUserID; String stockSymbol; Statement stmt = con.createStatement(); try { con.setAutoCommit(false); dbUserID = user.getUserID(); if (getUser(dbUserID) != null) { ResultSet rs1 = stmt.executeQuery("SELECT userID, symbol " + "FROM UserStocks WHERE userID = '" + dbUserID + "'"); while (rs1.next()) { try { stockSymbol = rs1.getString("symbol"); delUserStocks(dbUserID, stockSymbol); } catch (SQLException ex) { throw new SQLException("Deletion of user stock holding failed: " + ex.getMessage()); } } try { stmt.executeUpdate("DELETE FROM Users WHERE " + "userID = '" + dbUserID + "'"); } catch (SQLException ex) { throw new SQLException("User deletion failed: " + ex.getMessage()); } } else throw new IOException("User not found in database - cannot delete."); try { con.commit(); } catch (SQLException ex) { throw new SQLException("Transaction commit failed: " + ex.getMessage()); } } catch (SQLException ex) { try { con.rollback(); } catch (SQLException sqx) { throw new SQLException("Transaction failed then rollback failed: " + sqx.getMessage()); } throw new SQLException("Transaction failed; was rolled back: " + ex.getMessage()); } stmt.close(); } | 885,418 |
0 | public static LicenseKey parseKey(String key) throws InvalidLicenseKeyException { final String f_key = key.trim(); StringTokenizer st = new StringTokenizer(f_key, FIELD_SEPERATOR); int tc = st.countTokens(); int tc_name = tc - 9; try { final String product = st.nextToken(); final String type = st.nextToken(); final String loadStr = st.nextToken(); final int load = Integer.parseInt(loadStr); final String lowMajorVersionStr = st.nextToken(); final int lowMajorVersion = Integer.parseInt(lowMajorVersionStr); final String lowMinorVersionStr = st.nextToken(); final double lowMinorVersion = Double.parseDouble("0." + lowMinorVersionStr); final String highMajorVersionStr = st.nextToken(); final int highMajorVersion = Integer.parseInt(highMajorVersionStr); final String highMinorVersionStr = st.nextToken(); final double highMinorVersion = Double.parseDouble("0." + highMinorVersionStr); String regName = ""; for (int i = 0; i < tc_name; i++) regName += (i == 0 ? st.nextToken() : FIELD_SEPERATOR + st.nextToken()); final String randomHexStr = st.nextToken(); final String md5Str = st.nextToken(); String subKey = f_key.substring(0, f_key.indexOf(md5Str) - 1); byte[] md5; MessageDigest md = null; md = MessageDigest.getInstance("MD5"); md.update(subKey.getBytes()); md.update(FIELD_SEPERATOR.getBytes()); md.update(zuonicsPassword.getBytes()); md5 = md.digest(); String testKey = subKey + FIELD_SEPERATOR; for (int i = 0; i < md5.length; i++) testKey += Integer.toHexString(md5[i]).toUpperCase(); if (!testKey.equals(f_key)) throw new InvalidLicenseKeyException("doesn't hash"); final String f_regName = regName; return new LicenseKey() { public String getProduct() { return product; } public String getType() { return type; } public int getLoad() { return load; } public String getRegName() { return f_regName; } public double getlowVersion() { return lowMajorVersion + lowMinorVersion; } public double getHighVersion() { return highMajorVersion + highMinorVersion; } public String getRandomHexStr() { return randomHexStr; } public String getMD5HexStr() { return md5Str; } public String toString() { return f_key; } public boolean equals(Object obj) { if (obj.toString().equals(toString())) return true; return false; } }; } catch (Exception e) { throw new InvalidLicenseKeyException(e.getMessage()); } } | @Override public LispObject execute(LispObject first, LispObject second) throws ConditionThrowable { Pathname zipfilePathname = coerceToPathname(first); byte[] buffer = new byte[4096]; try { String zipfileNamestring = zipfilePathname.getNamestring(); if (zipfileNamestring == null) return error(new SimpleError("Pathname has no namestring: " + zipfilePathname.writeToString())); ZipOutputStream out = new ZipOutputStream(new FileOutputStream(zipfileNamestring)); LispObject list = second; while (list != NIL) { Pathname pathname = coerceToPathname(list.CAR()); String namestring = pathname.getNamestring(); if (namestring == null) { out.close(); File zipfile = new File(zipfileNamestring); zipfile.delete(); return error(new SimpleError("Pathname has no namestring: " + pathname.writeToString())); } File file = new File(namestring); FileInputStream in = new FileInputStream(file); ZipEntry entry = new ZipEntry(file.getName()); out.putNextEntry(entry); int n; while ((n = in.read(buffer)) > 0) out.write(buffer, 0, n); out.closeEntry(); in.close(); list = list.CDR(); } out.close(); } catch (IOException e) { return error(new LispError(e.getMessage())); } return zipfilePathname; } | 885,419 |
0 | public static void copyFile(File fileIn, File fileOut) throws IOException { FileChannel chIn = new FileInputStream(fileIn).getChannel(); FileChannel chOut = new FileOutputStream(fileOut).getChannel(); try { chIn.transferTo(0, chIn.size(), chOut); } catch (IOException e) { throw e; } finally { if (chIn != null) chIn.close(); if (chOut != null) chOut.close(); } } | public static SearchItem loadRecord(String id, boolean isContact) { String line = null; try { DefaultHttpClient httpClient = new DefaultHttpClient(); HttpPost httpPost = new HttpPost(isContact ? URL_RECORD_CONTACT : URL_RECORD_COMPANY); List<NameValuePair> nameValuePairs = new ArrayList<NameValuePair>(6); nameValuePairs.add(new BasicNameValuePair("format", "xml")); nameValuePairs.add(new BasicNameValuePair("token", Common.token)); nameValuePairs.add(new BasicNameValuePair("id", id)); httpPost.setEntity(new UrlEncodedFormEntity(nameValuePairs)); httpPost.setEntity(new UrlEncodedFormEntity(nameValuePairs)); HttpResponse response = httpClient.execute(httpPost); line = EntityUtils.toString(response.getEntity()); Document document = XMLfunctions.XMLfromString(line); NodeList nodes = document.getElementsByTagName("response"); Element e = (Element) nodes.item(0); String Name__Last__First_ = XMLfunctions.getValue(e, isContact ? "Name__Last__First_" : "Name"); String phone = ""; if (!isContact) phone = XMLfunctions.getValue(e, "Phone"); String Email1 = XMLfunctions.getValue(e, isContact ? "Personal_Email" : "Email"); String Home_Fax = XMLfunctions.getValue(e, isContact ? "Home_Fax" : "Fax1"); String Address1 = XMLfunctions.getValue(e, "Address1"); String Address2 = XMLfunctions.getValue(e, "Address2"); String City = XMLfunctions.getValue(e, "City"); String State = XMLfunctions.getValue(e, "State"); String Zip = XMLfunctions.getValue(e, "Zip"); String Country = XMLfunctions.getValue(e, "Country"); String Profile = XMLfunctions.getValue(e, "Profile"); String success = XMLfunctions.getValue(e, "success"); String error = XMLfunctions.getValue(e, "error"); SearchItem item = new SearchItem(); item.set(1, Name__Last__First_); item.set(2, phone); item.set(3, phone); item.set(4, Email1); item.set(5, Home_Fax); item.set(6, Address1); item.set(7, Address2); item.set(8, City); item.set(9, State); item.set(10, Zip); item.set(11, Profile); item.set(12, Country); item.set(13, success); item.set(14, error); return item; } catch (Exception e) { line = "<results status=\"error\"><msg>Can't connect to server</msg></results>"; line = null; } return null; } | 885,420 |
1 | public static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | 885,421 |
0 | public Item doGiveCommentsOnFeedback(String itemId, String comments, boolean approved) throws UnsupportedEncodingException, IOException { log(INFO, "Give comments on feedback: Item id=" + itemId); String sessionId = (String) RuntimeAccess.getInstance().getSession().getAttribute("SESSION_ID"); DefaultHttpClient httpclient = new DefaultHttpClient(); GiveCommentsOnFeedbackRequest request = new GiveCommentsOnFeedbackRequest(); request.setItemID(itemId); request.setSessionId(sessionId); request.setComments(comments); request.setApproved(approved); XStream writer = new XStream(); writer.setMode(XStream.XPATH_ABSOLUTE_REFERENCES); writer.alias("GiveCommentsOnFeedbackRequest", GiveCommentsOnFeedbackRequest.class); XStream reader = new XStream(); reader.setMode(XStream.XPATH_ABSOLUTE_REFERENCES); reader.alias("GiveCommentsOnFeedbackResponse", GiveCommentsOnFeedbackResponse.class); String strRequest = URLEncoder.encode(reader.toXML(request), "UTF-8"); HttpPost httppost = new HttpPost(MewitProperties.getMewitUrl() + "/resources/giveCommentsOnFeedback?REQUEST=" + strRequest); HttpResponse response = httpclient.execute(httppost); HttpEntity entity = response.getEntity(); if (entity != null) { String result = URLDecoder.decode(EntityUtils.toString(entity), "UTF-8"); GiveCommentsOnFeedbackResponse oResponse = (GiveCommentsOnFeedbackResponse) reader.fromXML(result); return oResponse.getItem(); } return null; } | private boolean dependencyOutOfDate(ScriptCacheEntry entry) { if (entry != null) { for (Iterator i = entry.dependencies.keySet().iterator(); i.hasNext(); ) { URLConnection urlc = null; URL url = (URL) i.next(); try { urlc = url.openConnection(); urlc.setDoInput(false); urlc.setDoOutput(false); long dependentLastModified = urlc.getLastModified(); if (dependentLastModified > ((Long) entry.dependencies.get(url)).longValue()) { return true; } } catch (IOException ioe) { return true; } } } return false; } | 885,422 |
0 | @Override public AC3DModel loadModel(URL url, String skin) throws IOException, IncorrectFormatException, ParsingErrorException { boolean baseURLWasNull = setBaseURLFromModelURL(url); AC3DModel model = loadModel(url.openStream(), skin); if (baseURLWasNull) { popBaseURL(); } return (model); } | public static void copyFile(final File sourceFile, final File destFile) throws IOException { if (!destFile.exists()) { destFile.createNewFile(); } FileInputStream inStream = null; FileOutputStream outStream = null; FileChannel source = null; FileChannel destination = null; try { source = (inStream = new FileInputStream(sourceFile)).getChannel(); destination = (outStream = new FileOutputStream(destFile)).getChannel(); destination.transferFrom(source, 0, source.size()); } finally { closeIO(source); closeIO(inStream); closeIO(destination); closeIO(outStream); } } | 885,423 |
0 | public void readHTMLFromURL(URL url) throws IOException { InputStream in = url.openStream(); try { readHTMLFromStream(new InputStreamReader(in)); } finally { try { in.close(); } catch (IOException ex) { Logger.getLogger(HTMLTextAreaModel.class.getName()).log(Level.SEVERE, "Exception while closing InputStream", ex); } } } | private void channelCopy(File source, File dest) throws IOException { FileChannel srcChannel = new FileInputStream(source).getChannel(); FileChannel dstChannel = new FileOutputStream(dest).getChannel(); try { dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); } finally { srcChannel.close(); dstChannel.close(); } } | 885,424 |
1 | @Override @Transactional public FileData store(FileData data, InputStream stream) { try { FileData file = save(data); file.setPath(file.getGroup() + File.separator + file.getId()); file = save(file); File folder = new File(PATH, file.getGroup()); if (!folder.exists()) folder.mkdirs(); File filename = new File(folder, file.getId() + ""); IOUtils.copyLarge(stream, new FileOutputStream(filename)); return file; } catch (IOException e) { throw new ServiceException("storage", e); } } | public static void copyFile(File src, File dst) throws IOException { InputStream in = new FileInputStream(src); OutputStream out = new FileOutputStream(dst); byte[] buf = new byte[1024]; int len; while ((len = in.read(buf)) > 0) out.write(buf, 0, len); in.close(); out.close(); } | 885,425 |
0 | public static String gerarDigest(String mensagem) { String mensagemCriptografada = null; try { MessageDigest md = MessageDigest.getInstance("SHA"); System.out.println("Mensagem original: " + mensagem); md.update(mensagem.getBytes()); byte[] digest = md.digest(); mensagemCriptografada = converterBytesEmHexa(digest); } catch (Exception e) { e.printStackTrace(); } return mensagemCriptografada; } | public void createZip(String baseDir, String objFileName) throws Exception { logger.info("createZip: [ " + baseDir + "] [" + objFileName + "]"); baseDir = baseDir + "/" + timesmpt; File folderObject = new File(baseDir); if (folderObject.exists()) { List<?> fileList = getSubFiles(new File(baseDir)); ZipOutputStream zos = new ZipOutputStream(new FileOutputStream(objFileName)); ZipEntry ze = null; byte[] buf = new byte[1024]; int readLen = 0; for (int i = 0; i < fileList.size(); i++) { File f = (File) fileList.get(i); ze = new ZipEntry(getAbsFileName(baseDir, f)); ze.setSize(f.length()); ze.setTime(f.lastModified()); zos.putNextEntry(ze); InputStream is = new BufferedInputStream(new FileInputStream(f)); while ((readLen = is.read(buf, 0, 1024)) != -1) { zos.write(buf, 0, readLen); } is.close(); } zos.close(); } else { throw new Exception("this folder isnot exist!"); } } | 885,426 |
0 | public static synchronized String encrypt(String plaintext) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md = null; md = MessageDigest.getInstance("SHA"); md.update(plaintext.getBytes("UTF-8")); byte raw[] = md.digest(); String hash = (new BASE64Encoder()).encode(raw); return hash; } | public int addDecisionInstruction(int condition, String frameSlot, String linkName, int objectId, String attribute, int positive, int negative) throws FidoDatabaseException, ObjectNotFoundException, InstructionNotFoundException { try { Connection conn = null; Statement stmt = null; try { if ((condition == ConditionalOperatorTable.CONTAINS_LINK) || (condition == ConditionalOperatorTable.NOT_CONTAINS_LINK)) { ObjectTable ot = new ObjectTable(); if (ot.contains(objectId) == false) throw new ObjectNotFoundException(objectId); } conn = fido.util.FidoDataSource.getConnection(); conn.setAutoCommit(false); stmt = conn.createStatement(); if (contains(stmt, positive) == false) throw new InstructionNotFoundException(positive); if (contains(stmt, negative) == false) throw new InstructionNotFoundException(negative); String sql = "insert into Instructions (Type, Operator, FrameSlot, LinkName, ObjectId, AttributeName) " + "values (2, " + condition + ", '" + frameSlot + "', '" + linkName + "', " + objectId + ", '" + attribute + "')"; stmt.executeUpdate(sql); int id = getCurrentId(stmt); InstructionGroupTable groupTable = new InstructionGroupTable(); groupTable.deleteInstruction(stmt, id); if (positive != -1) groupTable.addInstructionAt(stmt, id, 1, positive); if (negative != -1) groupTable.addInstructionAt(stmt, id, 2, negative); conn.commit(); return id; } catch (SQLException e) { if (conn != null) conn.rollback(); throw e; } finally { if (stmt != null) stmt.close(); if (conn != null) conn.close(); } } catch (SQLException e) { throw new FidoDatabaseException(e); } } | 885,427 |
0 | private BibtexDatabase parseBibtexDatabase(List<String> id, boolean abs) throws IOException { if (id.isEmpty()) { return null; } URL url; URLConnection conn; try { url = new URL(importUrl); conn = url.openConnection(); } catch (MalformedURLException e) { e.printStackTrace(); return null; } conn.setDoInput(true); conn.setDoOutput(true); conn.setRequestProperty("Content-Type", "application/x-www-form-urlencoded"); conn.setRequestProperty("Referer", searchUrl); PrintWriter out = new PrintWriter(conn.getOutputStream()); String recordIds = ""; Iterator<String> iter = id.iterator(); while (iter.hasNext()) { recordIds += iter.next() + " "; } recordIds = recordIds.trim(); String citation = abs ? "citation-abstract" : "citation-only"; String content = "recordIds=" + recordIds.replaceAll(" ", "%20") + "&fromPageName=&citations-format=" + citation + "&download-format=download-bibtex"; System.out.println(content); out.write(content); out.flush(); out.close(); BufferedReader bufr = new BufferedReader(new InputStreamReader(conn.getInputStream())); StringBuffer sb = new StringBuffer(); char[] buffer = new char[256]; while (true) { int bytesRead = bufr.read(buffer); if (bytesRead == -1) { break; } for (int i = 0; i < bytesRead; i++) { sb.append((char) buffer[i]); } } System.out.println(sb.toString()); ParserResult results = new BibtexParser(bufr).parse(); bufr.close(); return results.getDatabase(); } | protected int doExecuteUpdate(PreparedStatement statement) throws SQLException { connection.setAutoCommit(isAutoCommit()); int rs = -1; try { lastError = null; rs = statement.executeUpdate(); if (!isAutoCommit()) connection.commit(); } catch (Exception ex) { if (!isAutoCommit()) { lastError = ex; connection.rollback(); LogUtils.log(Level.SEVERE, "Transaction is being rollback. Error: " + ex.toString()); } } finally { if (statement != null) statement.close(); } return rs; } | 885,428 |
1 | private static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | public void run() { try { textUpdater.start(); int cnt; byte[] buf = new byte[4096]; File file = null; ZipInputStream zis = new ZipInputStream(new FileInputStream(new File(filename))); ZipEntry ze = zis.getNextEntry(); FileOutputStream fos; while (ze != null) { if (ze.isDirectory()) { file = new File(ze.getName()); if (!file.exists()) { textUpdater.appendText("Creating directory: " + ze.getName() + "\n"); file.mkdirs(); } } else { textUpdater.appendText("Extracting file: " + ze.getName() + "\n"); fos = new FileOutputStream(dstdir + File.separator + ze.getName()); while ((cnt = zis.read(buf, 0, buf.length)) != -1) fos.write(buf, 0, cnt); fos.close(); } zis.closeEntry(); ze = zis.getNextEntry(); } zis.close(); if (complete != null) textUpdater.appendText(complete + "\n"); } catch (Exception e) { e.printStackTrace(); } textUpdater.setFinished(true); } | 885,429 |
1 | public static void copyFile(File src, File dst) throws IOException { FileChannel inChannel = new FileInputStream(src).getChannel(); FileChannel outChannel = new FileOutputStream(dst).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | @Override public void sendContent(OutputStream out, Range range, Map<String, String> params, String contentType) throws IOException, NotAuthorizedException, BadRequestException, NotFoundException { try { resolveFileAttachment(); } catch (NoFileByTheIdException e) { throw new NotFoundException(e.getLocalizedMessage()); } DefinableEntity owningEntity = fa.getOwner().getEntity(); InputStream in = getFileModule().readFile(owningEntity.getParentBinder(), owningEntity, fa); try { if (range != null) { if (logger.isDebugEnabled()) logger.debug("sendContent: ranged content: " + toString(fa)); PartialGetHelper.writeRange(in, range, out); } else { if (logger.isDebugEnabled()) logger.debug("sendContent: send whole file " + toString(fa)); IOUtils.copy(in, out); } out.flush(); } catch (ReadingException e) { throw new IOException(e); } catch (WritingException e) { throw new IOException(e); } finally { IOUtils.closeQuietly(in); } } | 885,430 |
0 | public byte[] uniqueID(String name, String topic) { String key; byte[] id; synchronized (cache_) { key = name + "|" + topic; id = (byte[]) cache_.get(key); if (id == null) { MessageDigest md; try { md = MessageDigest.getInstance("SHA"); md.update(name.getBytes()); md.update(topic.getBytes()); id = md.digest(); cache_.put(key, id); if (debug_) { System.out.println("Cached " + key + " [" + id[0] + "," + id[1] + ",...]"); } } catch (NoSuchAlgorithmException e) { throw new Error("SHA not available!"); } } } return id; } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 885,431 |
0 | private void trainSRLParser(byte flag, JarArchiveOutputStream zout) throws Exception { AbstractSRLParser labeler = null; AbstractDecoder[] decoder = null; if (flag == SRLParser.FLAG_TRAIN_LEXICON) { System.out.println("\n* Save lexica"); labeler = new SRLParser(flag, s_featureXml); } else if (flag == SRLParser.FLAG_TRAIN_INSTANCE) { System.out.println("\n* Print training instances"); System.out.println("- loading lexica"); labeler = new SRLParser(flag, t_xml, s_lexiconFiles); } else if (flag == SRLParser.FLAG_TRAIN_BOOST) { System.out.println("\n* Train boost"); decoder = new AbstractDecoder[m_model.length]; for (int i = 0; i < decoder.length; i++) decoder[i] = new OneVsAllDecoder((OneVsAllModel) m_model[i]); labeler = new SRLParser(flag, t_xml, t_map, decoder); } AbstractReader<DepNode, DepTree> reader = new SRLReader(s_trainFile, true); DepTree tree; int n; labeler.setLanguage(s_language); reader.setLanguage(s_language); for (n = 0; (tree = reader.nextTree()) != null; n++) { labeler.parse(tree); if (n % 1000 == 0) System.out.printf("\r- parsing: %dK", n / 1000); } System.out.println("\r- labeling: " + n); if (flag == SRLParser.FLAG_TRAIN_LEXICON) { System.out.println("- labeling"); labeler.saveTags(s_lexiconFiles); t_xml = labeler.getSRLFtrXml(); } else if (flag == SRLParser.FLAG_TRAIN_INSTANCE || flag == SRLParser.FLAG_TRAIN_BOOST) { a_yx = labeler.a_trans; zout.putArchiveEntry(new JarArchiveEntry(ENTRY_FEATURE)); IOUtils.copy(new FileInputStream(s_featureXml), zout); zout.closeArchiveEntry(); for (String lexicaFile : s_lexiconFiles) { zout.putArchiveEntry(new JarArchiveEntry(lexicaFile)); IOUtils.copy(new FileInputStream(lexicaFile), zout); zout.closeArchiveEntry(); } if (flag == SRLParser.FLAG_TRAIN_INSTANCE) t_map = labeler.getSRLFtrMap(); } } | @Override public Directory directory() { HttpURLConnection urlConnection = null; InputStream in = null; try { URL url = new URL(DIRECTORY_URL); urlConnection = (HttpURLConnection) url.openConnection(); urlConnection.setRequestProperty("Accept-Encoding", "gzip, deflate"); String encoding = urlConnection.getContentEncoding(); if ("gzip".equalsIgnoreCase(encoding)) { in = new GZIPInputStream(urlConnection.getInputStream()); } else if ("deflate".equalsIgnoreCase(encoding)) { in = new InflaterInputStream(urlConnection.getInputStream(), new Inflater(true)); } else { in = urlConnection.getInputStream(); } return persister.read(IcecastDirectory.class, in); } catch (Exception e) { throw new RuntimeException("Failed to get directory", e); } finally { if (in != null) { try { in.close(); } catch (IOException e) { } } if (urlConnection != null) { urlConnection.disconnect(); } } } | 885,432 |
1 | public static void notify(String msg) throws Exception { String url = "http://api.clickatell.com/http/sendmsg?"; url = add(url, "user", user); url = add(url, "password", password); url = add(url, "api_id", apiId); url = add(url, "to", to); url = add(url, "text", msg); URL u = new URL(url); URLConnection c = u.openConnection(); InputStream is = c.getInputStream(); IOUtils.copy(is, System.out); IOUtils.closeQuietly(is); System.out.println(); } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 885,433 |
0 | private void inject(int x, int y) throws IOException { Tag source = data.getTag(); Log.event(Log.DEBUG_INFO, "source: " + source.getString()); if (source == Tag.ORGANISM) { String seed = data.readString(); data.readTag(Tag.STREAM); injectCodeTape(data.getIn(), seed, x, y); } else if (source == Tag.URL) { String url = data.readString(); String seed = url.substring(url.lastIndexOf('.') + 1); BufferedReader urlIn = null; try { urlIn = new BufferedReader(new InputStreamReader(new URL(url).openStream())); injectCodeTape(urlIn, seed, x, y); } finally { if (urlIn != null) urlIn.close(); } } else data.writeString("unknown organism source: " + source.getString()); } | public static final String computeHash(String stringToCompile) { String retVal = null; try { MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.reset(); md5.update(stringToCompile.getBytes()); byte[] result = md5.digest(); StringBuffer hexString = new StringBuffer(); for (int i = 0; i < result.length; i++) { hexString.append(Integer.toHexString(0xFF & result[i])); } retVal = hexString.toString(); if (log.isDebugEnabled()) log.debug("MD5 hash for \"" + stringToCompile + "\" is: " + retVal); } catch (Exception exe) { log.error(exe.getMessage(), exe); } return retVal; } | 885,434 |
1 | private void getRandomGUID(boolean secure) { MessageDigest md5 = null; StringBuffer sbValueBeforeMD5 = new StringBuffer(); try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { logger.debug("Random GUID error: " + e.getMessage()); } try { long time = System.currentTimeMillis(); long rand = 0; if (secure) { rand = mySecureRand.nextLong(); } else { rand = myRand.nextLong(); } sbValueBeforeMD5.append(s_id); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(time)); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(rand)); valueBeforeMD5 = sbValueBeforeMD5.toString(); md5.update(valueBeforeMD5.getBytes()); byte[] array = md5.digest(); StringBuffer sb = new StringBuffer(); for (int j = 0; j < array.length; ++j) { int b = array[j] & 0xFF; if (b < 0x10) sb.append('0'); sb.append(Integer.toHexString(b)); } valueAfterMD5 = sb.toString(); } catch (Exception e) { System.out.println("Error:" + e); } } | public String md5(String string) throws GeneralSecurityException { MessageDigest algorithm = MessageDigest.getInstance("MD5"); algorithm.reset(); algorithm.update(string.getBytes()); byte messageDigest[] = algorithm.digest(); StringBuffer hexString = new StringBuffer(); for (int i = 0; i < messageDigest.length; i++) { hexString.append(Integer.toHexString(0xFF & messageDigest[i])); } return hexString.toString(); } | 885,435 |
1 | public static void main(String[] args) throws Exception { String linesep = System.getProperty("line.separator"); FileOutputStream fos = new FileOutputStream(new File("lib-licenses.txt")); fos.write(new String("JCP contains the following libraries. Please read this for comments on copyright etc." + linesep + linesep).getBytes()); fos.write(new String("Chemistry Development Kit, master version as of " + new Date().toString() + " (http://cdk.sf.net)" + linesep).getBytes()); fos.write(new String("Copyright 1997-2009 The CDK Development Team" + linesep).getBytes()); fos.write(new String("License: LGPL v2 (http://www.gnu.org/licenses/old-licenses/gpl-2.0.html)" + linesep).getBytes()); fos.write(new String("Download: https://sourceforge.net/projects/cdk/files/" + linesep).getBytes()); fos.write(new String("Source available at: http://sourceforge.net/scm/?type=git&group_id=20024" + linesep + linesep).getBytes()); File[] files = new File(args[0]).listFiles(new JarFileFilter()); for (int i = 0; i < files.length; i++) { if (new File(files[i].getPath() + ".meta").exists()) { Map<String, Map<String, String>> metaprops = readProperties(new File(files[i].getPath() + ".meta")); Iterator<String> itsect = metaprops.keySet().iterator(); while (itsect.hasNext()) { String section = itsect.next(); fos.write(new String(metaprops.get(section).get("Library") + " " + metaprops.get(section).get("Version") + " (" + metaprops.get(section).get("Homepage") + ")" + linesep).getBytes()); fos.write(new String("Copyright " + metaprops.get(section).get("Copyright") + linesep).getBytes()); fos.write(new String("License: " + metaprops.get(section).get("License") + " (" + metaprops.get(section).get("LicenseURL") + ")" + linesep).getBytes()); fos.write(new String("Download: " + metaprops.get(section).get("Download") + linesep).getBytes()); fos.write(new String("Source available at: " + metaprops.get(section).get("SourceCode") + linesep + linesep).getBytes()); } } if (new File(files[i].getPath() + ".extra").exists()) { fos.write(new String("The author says:" + linesep).getBytes()); FileInputStream in = new FileInputStream(new File(files[i].getPath() + ".extra")); int len; byte[] buf = new byte[1024]; while ((len = in.read(buf)) > 0) { fos.write(buf, 0, len); } } fos.write(linesep.getBytes()); } fos.close(); } | @Override public LispObject execute(LispObject first, LispObject second) throws ConditionThrowable { Pathname zipfilePathname = coerceToPathname(first); byte[] buffer = new byte[4096]; try { String zipfileNamestring = zipfilePathname.getNamestring(); if (zipfileNamestring == null) return error(new SimpleError("Pathname has no namestring: " + zipfilePathname.writeToString())); ZipOutputStream out = new ZipOutputStream(new FileOutputStream(zipfileNamestring)); LispObject list = second; while (list != NIL) { Pathname pathname = coerceToPathname(list.CAR()); String namestring = pathname.getNamestring(); if (namestring == null) { out.close(); File zipfile = new File(zipfileNamestring); zipfile.delete(); return error(new SimpleError("Pathname has no namestring: " + pathname.writeToString())); } File file = new File(namestring); FileInputStream in = new FileInputStream(file); ZipEntry entry = new ZipEntry(file.getName()); out.putNextEntry(entry); int n; while ((n = in.read(buffer)) > 0) out.write(buffer, 0, n); out.closeEntry(); in.close(); list = list.CDR(); } out.close(); } catch (IOException e) { return error(new LispError(e.getMessage())); } return zipfilePathname; } | 885,436 |
1 | public void copyFile(File sourceFile, File destFile) throws IOException { Log.level3("Copying " + sourceFile.getPath() + " to " + destFile.getPath()); if (!destFile.exists()) { destFile.createNewFile(); } FileChannel source = null; FileChannel destination = null; try { source = new FileInputStream(sourceFile).getChannel(); destination = new FileOutputStream(destFile).getChannel(); destination.transferFrom(source, 0, source.size()); } finally { if (source != null) { source.close(); } } if (destination != null) { destination.close(); } } | private void copyFile(File f) throws IOException { File newFile = new File(destdir + "/" + f.getName()); newFile.createNewFile(); FileInputStream fin = new FileInputStream(f); FileOutputStream fout = new FileOutputStream(newFile); int c; while ((c = fin.read()) != -1) fout.write(c); fin.close(); fout.close(); } | 885,437 |
0 | public static void main(String args[]) { Connection con; if (args.length != 2) { System.out.println("Usage: Shutdown <host> <password>"); System.exit(0); } try { con = new Connection(args[0]); con.tStart(); Message message = new Message(MessageTypes.SHUTDOWN_SERVER); java.security.MessageDigest hash = java.security.MessageDigest.getInstance("SHA-1"); hash.update(args[1].getBytes("UTF-8")); message.put("pwhash", hash.digest()); con.send(message); con.join(); } catch (java.io.UnsupportedEncodingException e) { System.err.println("Password character encoding not supported."); } catch (java.io.IOException e) { System.out.println(e.toString()); } catch (java.security.NoSuchAlgorithmException e) { System.out.println("Password hash algorithm SHA-1 not supported by runtime."); } catch (InterruptedException e) { } System.exit(0); } | private HttpURLConnection getConnection(String url) throws IOException { HttpURLConnection con = null; if (proxyHost != null && !proxyHost.equals("")) { if (proxyAuthUser != null && !proxyAuthUser.equals("")) { log("Proxy AuthUser: " + proxyAuthUser); log("Proxy AuthPassword: " + proxyAuthPassword); Authenticator.setDefault(new Authenticator() { @Override protected PasswordAuthentication getPasswordAuthentication() { if (getRequestorType().equals(RequestorType.PROXY)) { return new PasswordAuthentication(proxyAuthUser, proxyAuthPassword.toCharArray()); } else { return null; } } }); } final Proxy proxy = new Proxy(Type.HTTP, InetSocketAddress.createUnresolved(proxyHost, proxyPort)); if (DEBUG) { log("Opening proxied connection(" + proxyHost + ":" + proxyPort + ")"); } con = (HttpURLConnection) new URL(url).openConnection(proxy); } else { con = (HttpURLConnection) new URL(url).openConnection(); } if (connectionTimeout > 0 && !isJDK14orEarlier) { con.setConnectTimeout(connectionTimeout); } if (readTimeout > 0 && !isJDK14orEarlier) { con.setReadTimeout(readTimeout); } return con; } | 885,438 |
1 | public static final void copyFile(File argSource, File argDestination) throws IOException { FileChannel srcChannel = new FileInputStream(argSource).getChannel(); FileChannel dstChannel = new FileOutputStream(argDestination).getChannel(); try { dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); } finally { srcChannel.close(); dstChannel.close(); } } | public static void copyFile(File from, File to) throws Exception { if (!from.exists()) return; FileInputStream in = new FileInputStream(from); FileOutputStream out = new FileOutputStream(to); byte[] buffer = new byte[BUFFER_SIZE]; int bytes_read; while (true) { bytes_read = in.read(buffer); if (bytes_read == -1) break; out.write(buffer, 0, bytes_read); } out.flush(); out.close(); in.close(); } | 885,439 |
0 | private static LaunchablePlugin[] findLaunchablePlugins(LoggerChannelListener listener) { List res = new ArrayList(); File app_dir = getApplicationFile("plugins"); if (!(app_dir.exists()) && app_dir.isDirectory()) { listener.messageLogged(LoggerChannel.LT_ERROR, "Application dir '" + app_dir + "' not found"); return (new LaunchablePlugin[0]); } File[] plugins = app_dir.listFiles(); if (plugins == null || plugins.length == 0) { listener.messageLogged(LoggerChannel.LT_ERROR, "Application dir '" + app_dir + "' empty"); return (new LaunchablePlugin[0]); } for (int i = 0; i < plugins.length; i++) { File plugin_dir = plugins[i]; if (!plugin_dir.isDirectory()) { continue; } try { ClassLoader classLoader = PluginLauncherImpl.class.getClassLoader(); ClassLoader root_cl = classLoader; File[] contents = plugin_dir.listFiles(); if (contents == null || contents.length == 0) { continue; } String[] plugin_version = { null }; String[] plugin_id = { null }; contents = getHighestJarVersions(contents, plugin_version, plugin_id, true); for (int j = 0; j < contents.length; j++) { classLoader = addFileToClassPath(root_cl, classLoader, contents[j]); } Properties props = new Properties(); File properties_file = new File(plugin_dir, "plugin.properties"); if (properties_file.exists()) { FileInputStream fis = null; try { fis = new FileInputStream(properties_file); props.load(fis); } finally { if (fis != null) { fis.close(); } } } else { if (classLoader instanceof URLClassLoader) { URLClassLoader current = (URLClassLoader) classLoader; URL url = current.findResource("plugin.properties"); if (url != null) { props.load(url.openStream()); } } } String plugin_class = (String) props.get("plugin.class"); if (plugin_class == null || plugin_class.indexOf(';') != -1) { continue; } Class c = classLoader.loadClass(plugin_class); Plugin plugin = (Plugin) c.newInstance(); if (plugin instanceof LaunchablePlugin) { preloaded_plugins.put(plugin_class, plugin); res.add(plugin); } } catch (Throwable e) { listener.messageLogged("Load of plugin in '" + plugin_dir + "' fails", e); } } LaunchablePlugin[] x = new LaunchablePlugin[res.size()]; res.toArray(x); return (x); } | public static Vector<Person> parseFriends(Worker me, SmEngine sme, Person resource) throws IOException { URL url = new URL(resource.getUrl()); long fid; if (sme.getProxy() == null) me.conn = (HttpURLConnection) url.openConnection(); else me.conn = (HttpURLConnection) url.openConnection(sme.getProxy()); me.conn.setReadTimeout(20 * 1000); Vector<Person> result; org.htmlparser.Parser parser; NodeList nl; NodeFilter[] filters1 = new NodeFilter[2]; filters1[0] = new TagNameFilter("a"); filters1[1] = new HasAttributeFilter("class", "signup_btn uiButton uiButtonSpecial uiButtonLarge"); NodeFilter[] filters2 = new NodeFilter[3]; filters2[0] = new TagNameFilter("a"); filters2[1] = new HasAttributeFilter("class", "title"); filters2[2] = new HasParentFilter(new HasAttributeFilter("class", "UIPortrait_Text")); try { parser = new org.htmlparser.Parser(me.conn); } catch (ParserException e) { System.err.println(e.getMessage()); return null; } try { nl = parser.parse(new AndFilter(filters1)); fid = Long.parseLong(((LinkTag) nl.elementAt(0)).getLink().split("(fid=|&)")[2]); } catch (ParserException e) { e.printStackTrace(); return null; } result = new Vector<Person>(); try { nl = parser.parse(new AndFilter(filters2)); } catch (ParserException e) { e.printStackTrace(); return null; } Person p; for (int i = 0; i < nl.size(); i++) { p = sme.getPerson(fid, ((TagNode) nl.elementAt(i)).getAttribute("title"), ((TagNode) nl.elementAt(i)).getAttribute("href")); resource.addFriend(p); p.addFriend(resource); synchronized (p) { if (!p.isInQueue()) { p.setInQueue(true); sme.addResource(p); } } } return result; } | 885,440 |
0 | public Configuration(URL url) { InputStream in = null; try { load(in = url.openStream()); } catch (Exception e) { throw new RuntimeException("Could not load configuration from " + url, e); } finally { if (in != null) { try { in.close(); } catch (IOException ignore) { } } } } | private void storeFieldMap(WorkingContent c, Connection conn) throws SQLException { SQLDialect dialect = getDatabase().getSQLDialect(); if (TRANSACTIONS_ENABLED) { conn.setAutoCommit(false); } try { Object thisKey = c.getPrimaryKey(); deleteFieldContent(thisKey, conn); PreparedStatement ps = null; StructureItem nextItem; Map fieldMap = c.getFieldMap(); String type; Object value, siKey; for (Iterator i = c.getStructure().getStructureItems().iterator(); i.hasNext(); ) { nextItem = (StructureItem) i.next(); type = nextItem.getDataType().toUpperCase(); siKey = nextItem.getPrimaryKey(); value = fieldMap.get(nextItem.getName()); try { if (type.equals(StructureItem.DATE)) { ps = conn.prepareStatement(sqlConstants.get("INSERT_DATE_FIELD")); ps.setObject(1, thisKey); ps.setObject(2, siKey); dialect.setDate(ps, 3, (Date) value); ps.executeUpdate(); } else if (type.equals(StructureItem.INT) || type.equals(StructureItem.FLOAT) || type.equals(StructureItem.VARCHAR)) { ps = conn.prepareStatement(sqlConstants.get("INSERT_" + type + "_FIELD")); ps.setObject(1, thisKey); ps.setObject(2, siKey); if (value != null) { ps.setObject(3, value); } else { int sqlType = Types.INTEGER; if (type.equals(StructureItem.FLOAT)) { sqlType = Types.FLOAT; } else if (type.equals(StructureItem.VARCHAR)) { sqlType = Types.VARCHAR; } ps.setNull(3, sqlType); } ps.executeUpdate(); } else if (type.equals(StructureItem.TEXT)) { setTextField(c, siKey, (String) value, conn); } if (ps != null) { ps.close(); ps = null; } } finally { if (ps != null) ps.close(); } } if (TRANSACTIONS_ENABLED) { conn.commit(); } } catch (SQLException e) { if (TRANSACTIONS_ENABLED) { conn.rollback(); } throw e; } finally { if (TRANSACTIONS_ENABLED) { conn.setAutoCommit(true); } } } | 885,441 |
0 | static void copy(String src, String dest) throws IOException { File ifp = new File(src); File ofp = new File(dest); if (ifp.exists() == false) { throw new IOException("file '" + src + "' does not exist"); } FileInputStream fis = new FileInputStream(ifp); FileOutputStream fos = new FileOutputStream(ofp); byte[] b = new byte[1024]; while (fis.read(b) > 0) fos.write(b); fis.close(); fos.close(); } | public static String post(String strUrl, String strPostString) { try { URL url = new URL(strUrl); HttpURLConnection conn = (HttpURLConnection) url.openConnection(); conn.setRequestMethod("POST"); conn.setDoInput(true); conn.setDoOutput(true); conn.setUseCaches(true); conn.setAllowUserInteraction(true); conn.setFollowRedirects(true); conn.setInstanceFollowRedirects(true); conn.setRequestProperty("Content-Type", "application/x-www-form-urlencoded"); DataOutputStream out = new DataOutputStream(conn.getOutputStream()); out.writeBytes(strPostString); out.flush(); out.close(); BufferedReader in = new BufferedReader(new InputStreamReader(conn.getInputStream())); String s = ""; String sRet = ""; while ((s = in.readLine()) != null) { sRet += s; } in.close(); return sRet; } catch (MalformedURLException e) { System.out.println("Internal Error. Malformed URL."); e.printStackTrace(); } catch (IOException e) { System.out.println("Internal I/O Error."); e.printStackTrace(); } return ""; } | 885,442 |
0 | public void storeArticles(Context ctx, RSSFeed feed) throws RSSHandlerError { try { mFeed = feed; db = new RSSDB(ctx); SAXParserFactory spf = SAXParserFactory.newInstance(); SAXParser sp = spf.newSAXParser(); XMLReader xr = sp.getXMLReader(); xr.setContentHandler(this); InputStream stream = feed.url.openStream(); InputSource source = new InputSource(stream); xr.parse(source); } catch (IOException e) { Log.e("GeneriCast", e.toString()); throw new RSSHandlerError("IOError"); } catch (SAXException e) { Log.e("GeneriCast", e.toString()); throw new RSSHandlerError("ParsingError"); } catch (ParserConfigurationException e) { Log.e("GeneriCast", e.toString()); throw new RSSHandlerError("ParsingError"); } } | public void command() { JFileChooser chooser = new JFileChooser(); chooser.setCurrentDirectory(new File(dir)); int returnVal = chooser.showOpenDialog(null); if (returnVal == JFileChooser.APPROVE_OPTION) { filename = chooser.getSelectedFile().getAbsolutePath(); String f2 = ""; for (int i = 0; i < filename.length(); ++i) { if (filename.charAt(i) != '\\') { f2 = f2 + filename.charAt(i); } else f2 = f2 + '/'; } filename = f2; if (filename.contains(dir)) { filename = filename.substring(dir.length()); } else { try { FileChannel srcFile = new FileInputStream(filename).getChannel(); FileChannel dstFile; filename = "ueditor_files/" + chooser.getSelectedFile().getName(); File newFile; if (!(newFile = new File(dir + filename)).createNewFile()) { dstFile = new FileInputStream(dir + filename).getChannel(); newFile = null; } else { dstFile = new FileOutputStream(newFile).getChannel(); } dstFile.transferFrom(srcFile, 0, srcFile.size()); srcFile.close(); dstFile.close(); System.out.println("file copyed to: " + dir + filename); } catch (Exception e) { e.printStackTrace(); label.setIcon(InputText.iconX); filename = null; for (Group g : groups) { g.updateValidity(true); } return; } } label.setIcon(InputText.iconV); for (Group g : groups) { g.updateValidity(true); } } } | 885,443 |
1 | protected File getFile(NameCategory category) throws IOException { File home = new File(System.getProperty("user.dir")); String fileName = String.format("%s.txt", category); File file = new File(home, fileName); if (file.exists()) { return file; } else { URL url = LocalNameGenerator.class.getResource("/" + fileName); if (url == null) { throw new IllegalStateException(String.format("Cannot find resource at %s", fileName)); } else { InputStream in = url.openStream(); try { BufferedOutputStream out = new BufferedOutputStream(new FileOutputStream(file)); try { IOUtils.copy(in, out); } finally { out.close(); } } finally { in.close(); } return file; } } } | private void copyResources(File oggDecDir, String[] resources, String resPrefix) throws FileNotFoundException, IOException { for (int i = 0; i < resources.length; i++) { String res = resPrefix + resources[i]; InputStream is = this.getClass().getResourceAsStream(res); if (is == null) throw new IllegalArgumentException("cannot find resource '" + res + "'"); File file = new File(oggDecDir, resources[i]); if (!file.exists() || file.length() == 0) { FileOutputStream fos = new FileOutputStream(file); try { IOUtils.copyStreams(is, fos); } finally { fos.close(); } } } } | 885,444 |
0 | public ActionForward dbExecute(ActionMapping pMapping, ActionForm pForm, HttpServletRequest pRequest, HttpServletResponse pResponse) throws DatabaseException { SubmitRegistrationForm newUserData = (SubmitRegistrationForm) pForm; if (!newUserData.getAcceptsEULA()) { pRequest.setAttribute("acceptsEULA", new Boolean(true)); pRequest.setAttribute("noEula", new Boolean(true)); return (pMapping.findForward("noeula")); } if (newUserData.getAction().equals("none")) { newUserData.setAction("submit"); pRequest.setAttribute("UserdataBad", new Boolean(true)); return (pMapping.findForward("success")); } boolean userDataIsOk = true; if (newUserData == null) { return (pMapping.findForward("failure")); } if (newUserData.getLastName().length() < 2) { userDataIsOk = false; pRequest.setAttribute("LastNameBad", new Boolean(true)); } if (newUserData.getFirstName().length() < 2) { userDataIsOk = false; pRequest.setAttribute("FirstNameBad", new Boolean(true)); } EmailValidator emailValidator = EmailValidator.getInstance(); if (!emailValidator.isValid(newUserData.getEmailAddress())) { pRequest.setAttribute("EmailBad", new Boolean(true)); userDataIsOk = false; } else { if (database.acquireUserByEmail(newUserData.getEmailAddress()) != null) { pRequest.setAttribute("EmailDouble", new Boolean(true)); userDataIsOk = false; } } if (newUserData.getFirstPassword().length() < 5) { userDataIsOk = false; pRequest.setAttribute("FirstPasswordBad", new Boolean(true)); } if (newUserData.getSecondPassword().length() < 5) { userDataIsOk = false; pRequest.setAttribute("SecondPasswordBad", new Boolean(true)); } if (!newUserData.getSecondPassword().equals(newUserData.getFirstPassword())) { userDataIsOk = false; pRequest.setAttribute("PasswordsNotEqual", new Boolean(true)); } if (userDataIsOk) { User newUser = new User(); newUser.setFirstName(newUserData.getFirstName()); newUser.setLastName(newUserData.getLastName()); if (!newUserData.getFirstPassword().equals("")) { MessageDigest md; try { md = MessageDigest.getInstance("SHA"); } catch (NoSuchAlgorithmException e) { throw new DatabaseException("Could not hash password for storage: no such algorithm"); } try { md.update(newUserData.getFirstPassword().getBytes("UTF-8")); } catch (UnsupportedEncodingException e) { throw new DatabaseException("Could not hash password for storage: no such encoding"); } newUser.setPassword((new BASE64Encoder()).encode(md.digest())); } newUser.setEmailAddress(newUserData.getEmailAddress()); newUser.setHomepage(newUserData.getHomepage()); newUser.setAddress(newUserData.getAddress()); newUser.setInstitution(newUserData.getInstitution()); newUser.setLanguages(newUserData.getLanguages()); newUser.setDegree(newUserData.getDegree()); newUser.setNationality(newUserData.getNationality()); newUser.setTitle(newUserData.getTitle()); newUser.setActive(true); try { database.updateUser(newUser); } catch (DatabaseException e) { pRequest.setAttribute("UserstoreBad", new Boolean(true)); return (pMapping.findForward("success")); } pRequest.setAttribute("UserdataFine", new Boolean(true)); } else { pRequest.setAttribute("UserdataBad", new Boolean(true)); } return (pMapping.findForward("success")); } | private AccessControlContext getAccessControlContext(final URL codebase) { PermissionCollection perms = (PermissionCollection) AccessController.doPrivileged(new PrivilegedAction() { public Object run() { Policy p = java.security.Policy.getPolicy(); if (p != null) { return p.getPermissions(new CodeSource(null, null)); } else { return null; } } }); if (perms == null) perms = new Permissions(); perms.add(new RuntimePermission("createClassLoader")); Permission p; java.net.URLConnection urlConnection = null; try { urlConnection = codebase.openConnection(); p = urlConnection.getPermission(); } catch (java.io.IOException ioe) { p = null; } if (p != null) perms.add(p); if (p instanceof FilePermission) { String path = p.getName(); int endIndex = path.lastIndexOf(File.separatorChar); if (endIndex != -1) { path = path.substring(0, endIndex + 1); if (path.endsWith(File.separator)) { path += "-"; } perms.add(new FilePermission(path, "read")); } } else { URL locUrl = codebase; if (urlConnection instanceof JarURLConnection) { locUrl = ((JarURLConnection) urlConnection).getJarFileURL(); } String host = locUrl.getHost(); if (host != null && (host.length() > 0)) perms.add(new SocketPermission(host, "connect, accept")); } ProtectionDomain domain = new ProtectionDomain(new CodeSource(codebase, null), perms); AccessControlContext acc = new AccessControlContext(new ProtectionDomain[] { domain }); return acc; } | 885,445 |
1 | @Test public void GetBingSearchResult() throws UnsupportedEncodingException { String query = "Scanner Java example"; String request = "http://api.bing.net/xml.aspx?AppId=731DD1E61BE6DE4601A3008DC7A0EB379149EC29" + "&Version=2.2&Market=en-US&Query=" + URLEncoder.encode(query, "UTF-8") + "&Sources=web+spell&Web.Count=50"; try { URL url = new URL(request); System.out.println("Host : " + url.getHost()); BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); String inputLine; String finalContents = ""; while ((inputLine = reader.readLine()) != null) { finalContents += "\n" + inputLine; } Document doc = Jsoup.parse(finalContents); Elements eles = doc.getElementsByTag("web:Url"); for (Element ele : eles) { System.out.println(ele.text()); } } catch (Exception e) { e.printStackTrace(); } } | public static void checkAndUpdateGameData() { new ErrThread() { @Override public void handledRun() throws Throwable { try { URL url = new URL(ONLINE_CLIENT_DATA + "gamedata.xml"); BufferedReader br = new BufferedReader(new InputStreamReader(url.openStream())); int lastversion = 0; String readHeader1 = br.readLine(); String readHeader2 = br.readLine(); String[] parts = readHeader2.split(" "); lastversion = new Integer(parts[1]); GameDatabase.loadVersion(); if (GameDatabase.version < lastversion) { Logger.log(LogTypes.LOG, "Downloading new gamedata"); BufferedOutputStream bo = null; File destfile = new File(GameDatabase.dataFilePath); if (!destfile.createNewFile()) { destfile.delete(); destfile.createNewFile(); } bo = new BufferedOutputStream(new FileOutputStream(destfile)); bo.write((readHeader1 + "\n").getBytes()); bo.write((readHeader2 + "\n").getBytes()); int readedbyte; while ((readedbyte = br.read()) != -1) { bo.write(readedbyte); } bo.flush(); try { br.close(); bo.close(); } catch (Exception ex) { Logger.log(ex); } } } catch (java.net.UnknownHostException unknownHost) { Logger.log("Sourceforge is down, cannot update gamedata"); } catch (Exception e) { JOptionPane.showMessageDialog(FrameOrganizer.getClientFrame(), "The gamedata is outdated, but Coopnet couldn't update it!", "Gamedata outdated", JOptionPane.INFORMATION_MESSAGE); throw e; } finally { GameDatabase.loadVersion(); GameDatabase.load("", GameDatabase.dataFilePath); GameDatabase.detectGames(); } } }.start(); } | 885,446 |
0 | public void actionPerformed(ActionEvent e) { if (e.getSource() == cancel) { email.setText(""); name.setText(""); category.setSelectedIndex(0); subject.setText(""); message.setText(""); setVisible(false); } else { StringBuffer errors = new StringBuffer(); if (email.getText().trim().equals("")) errors.append("El campo 'Email' es obligatorio<br/>"); if (name.getText().trim().equals("")) errors.append("El campo 'Nombre' es obligatorio<br/>"); if (subject.getText().trim().equals("")) errors.append("El campo 'T�tulo' es obligatorio<br/>"); if (message.getText().trim().equals("")) errors.append("No hay conrtenido en el mensaje<br/>"); if (errors.length() > 0) { JOptionPane.showMessageDialog(this, "<html><b>Error</b><br/>" + errors.toString() + "</html>", "Error", JOptionPane.ERROR_MESSAGE); } else { try { StringBuffer params = new StringBuffer(); params.append("name=").append(URLEncoder.encode(name.getText(), "UTF-8")).append("&category=").append(URLEncoder.encode((String) category.getSelectedItem(), "UTF-8")).append("&title=").append(URLEncoder.encode(subject.getText(), "UTF-8")).append("&email=").append(URLEncoder.encode(email.getText(), "UTF-8")).append("&id=").append(URLEncoder.encode(MainWindow.getUserPreferences().getUniqueId() + "", "UTF-8")).append("&body=").append(URLEncoder.encode(message.getText(), "UTF-8")); URL url = new URL("http://www.cronopista.com/diccionario2/sendMessage.php"); URLConnection connection = url.openConnection(); Utils.setupProxy(connection); connection.setDoOutput(true); OutputStreamWriter out = new OutputStreamWriter(connection.getOutputStream()); out.write(params.toString()); out.close(); BufferedReader in = new BufferedReader(new InputStreamReader(connection.getInputStream())); String decodedString; while ((decodedString = in.readLine()) != null) { System.out.println(decodedString); } in.close(); email.setText(""); name.setText(""); category.setSelectedIndex(0); subject.setText(""); message.setText(""); setVisible(false); } catch (Exception ex) { JOptionPane.showMessageDialog(this, "<html><b>Error</b><br/>Ha ocurrido un error enviando tu mensaje.<br/>" + "Por favor, int�ntalo m�s tarde o ponte en contacto conmigo a trav�s de www.cronopista.com</html>", "Error", JOptionPane.ERROR_MESSAGE); } } } } | private static void doCopyFile(File srcFile, File destFile, boolean preserveFileDate) throws IOException { if (destFile.exists() && destFile.isDirectory()) { throw new IOException("Destination '" + destFile + "' exists but is a directory"); } FileInputStream input = new FileInputStream(srcFile); try { FileOutputStream output = new FileOutputStream(destFile); try { IOUtils.copy(input, output); } finally { IOUtils.closeQuietly(output); } } finally { IOUtils.closeQuietly(input); } if (srcFile.length() != destFile.length()) { throw new IOException("Failed to copy full contents from '" + srcFile + "' to '" + destFile + "'"); } if (preserveFileDate) { destFile.setLastModified(srcFile.lastModified()); } } | 885,447 |
0 | public long add(T t) throws BaseException { Connection conn = null; PreparedStatement pstmt = null; long result = -1L; boolean flag = false; try { conn = getConnection(); if (conn != null) { flag = true; } else { conn = ConnectionManager.getConn(getStrConnection()); conn.setAutoCommit(false); } pstmt = getAdd(conn, t, this.getTableName()); pstmt.executeUpdate(); result = t.getId(); } catch (SQLException e) { try { if (!flag) { conn.rollback(); } } catch (Exception ex) { log.error("add(T " + t.toString() + ")回滚出错，错误信息：" + ex.getMessage()); } log.error("add(T " + t.toString() + ")方法出错:" + e.getMessage()); } catch (BaseException e) { throw e; } finally { try { if (!flag) { conn.setAutoCommit(true); } } catch (Exception e) { log.error("add(T " + t.toString() + ")方法设置自动提交出错，信息为:" + e.getMessage()); } ConnectionManager.closePreparedStatement(pstmt); if (!flag) { ConnectionManager.closeConn(conn); } } return result; } | public URLConnection getConnection() throws IOException { URLConnection con = url.openConnection(); con.setConnectTimeout(30 * 1000); if (username == null || "".equals(username) || password == null || "".equals(password)) return con; if (wsseMode) { con.setRequestProperty("X-WSSE", getWsseHeaderValue()); return con; } Authenticator.setDefault(new Authenticator() { protected PasswordAuthentication getPasswordAuthentication() { PasswordAuthentication auth = null; if (username != null && password != null) { auth = new PasswordAuthentication(username, password.toCharArray()); } return auth; } }); return con; } | 885,448 |
0 | public ActualTask(TEditor editor, TIGDataBase dataBase, String directoryPath, Vector images) { int i; lengthOfTask = images.size(); Element dataBaseXML = new Element("dataBase"); for (i = 0; ((i < images.size()) && !stop && !cancel); i++) { Vector imagen = new Vector(2); imagen = (Vector) images.elementAt(i); String element = (String) imagen.elementAt(0); current = i; String pathSrc = System.getProperty("user.dir") + File.separator + "images" + File.separator + element.substring(0, 1).toUpperCase() + File.separator + element; String name = pathSrc.substring(pathSrc.lastIndexOf(File.separator) + 1, pathSrc.length()); String pathDst = directoryPath + name; try { FileChannel srcChannel = new FileInputStream(pathSrc).getChannel(); FileChannel dstChannel = new FileOutputStream(pathDst).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } catch (IOException exc) { System.out.println(exc.getMessage()); System.out.println(exc.toString()); } Vector<String> keyWords = new Vector<String>(); keyWords = TIGDataBase.asociatedConceptSearch(element); Element image = new Element("image"); image.setAttribute("name", name); if (keyWords.size() != 0) { for (int k = 0; k < keyWords.size(); k++) { Element category = new Element("category"); category.setText(keyWords.get(k).trim()); image.addContent(category); } } dataBaseXML.addContent(image); } Document doc = new Document(dataBaseXML); try { XMLOutputter out = new XMLOutputter(); FileOutputStream f = new FileOutputStream(directoryPath + "images.xml"); out.output(doc, f); f.flush(); f.close(); } catch (Exception e) { e.printStackTrace(); } current = lengthOfTask; } | private static void getFileFtp(String user, String password, String host, int port, String fileName, String location) throws Exception { Log.info("\nretrieve " + fileName + NEW_LINE); FTPClient client = new FTPClient(); client.connect(host, port); int reply = client.getReplyCode(); if (!FTPReply.isPositiveCompletion(reply)) { throw new Exception("FTP fail to connect"); } if (!client.login(user, password)) { throw new Exception("FTP fail to login"); } try { File locationFile = new File(location); File dest = new File(locationFile, fileName); if (dest.exists()) { dest.delete(); } else { locationFile.mkdirs(); } boolean status = client.changeWorkingDirectory("/"); Log.info("chdir-status:" + status + NEW_LINE); client.setFileTransferMode(FTPClient.BINARY_FILE_TYPE); client.setFileType(FTPClient.BINARY_FILE_TYPE); client.enterLocalActiveMode(); InputStream in = client.retrieveFileStream(fileName); if (in == null) { Log.error("Input stream is null\n"); throw new Exception("Fail to retrieve file " + fileName); } Thread.sleep(3000); saveInputStreamToFile(in, new File(location, fileName)); } finally { client.disconnect(); } } | 885,449 |
1 | public List<SuspectFileProcessingStatus> retrieve() throws Exception { BufferedOutputStream bos = null; try { String listFilePath = GeneralUtils.generateAbsolutePath(getDownloadDirectoryPath(), getListName(), "/"); listFilePath = listFilePath.concat(".xml"); if (!new File(getDownloadDirectoryPath()).exists()) { FileUtils.forceMkdir(new File(getDownloadDirectoryPath())); } FileOutputStream listFileOutputStream = new FileOutputStream(listFilePath); bos = new BufferedOutputStream(listFileOutputStream); InputStream is = null; if (getUseProxy()) { is = URLUtils.getResponse(getUrl(), getUserName(), getPassword(), URLUtils.HTTP_GET_METHOD, getProxyHost(), getProxyPort()); IOUtils.copyLarge(is, bos); } else { URLUtils.getResponse(getUrl(), getUserName(), getPassword(), bos, null); } bos.flush(); bos.close(); File listFile = new File(listFilePath); if (!listFile.exists()) { throw new IllegalStateException("The list file did not get created"); } if (isLoggingInfo()) { logInfo("Downloaded list file : " + listFile); } List<SuspectFileProcessingStatus> sfpsList = new ArrayList<SuspectFileProcessingStatus>(); String loadType = GeneralConstants.LOAD_TYPE_FULL; String feedType = GeneralConstants.EMPTY_TOKEN; String listName = getListName(); String errorCode = ""; String description = ""; SuspectFileProcessingStatus sfps = getSuspectsLoaderService().storeFileIntoListIncomingDir(listFile, loadType, feedType, listName, errorCode, description); sfpsList.add(sfps); if (isLoggingInfo()) { logInfo("Retrieved list file with SuspectFileProcessingStatus: " + sfps); } return sfpsList; } finally { if (null != bos) { bos.close(); } } } | public static File copyFileAs(String path, String newName) { File src = new File(path); File dest = new File(newName); try { if (!dest.exists()) { dest.createNewFile(); } FileChannel source = new FileInputStream(src).getChannel(); FileChannel destination = new FileOutputStream(dest).getChannel(); destination.transferFrom(source, 0, source.size()); source.close(); destination.close(); } catch (FileNotFoundException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } return dest; } | 885,450 |
0 | private void updateIngredients(Recipe recipe, int id) throws Exception { PreparedStatement pst1 = null; PreparedStatement pst2 = null; try { conn = getConnection(); pst1 = conn.prepareStatement("DELETE FROM ingredients WHERE recipe_id = ?"); pst1.setInt(1, id); if (pst1.executeUpdate() >= 0) { pst2 = conn.prepareStatement("INSERT INTO ingredients (recipe_id, name, amount, measure_id, shop_flag) VALUES (?,?,?,?,?)"); IngredientContainer ings = recipe.getIngredients(); Ingredient ingBean = null; Iterator it; for (it = ings.getIngredients().iterator(); it.hasNext(); ) { ingBean = (Ingredient) it.next(); pst2.setInt(1, id); pst2.setString(2, ingBean.getName()); pst2.setDouble(3, ingBean.getAmount()); pst2.setInt(4, ingBean.getType()); pst2.setInt(5, ingBean.getShopFlag()); pst2.executeUpdate(); } } conn.commit(); } catch (Exception e) { conn.rollback(); MainFrame.appendStatusText("Can't add ingredient, the exception was " + e.getMessage()); } finally { try { if (pst1 != null) pst1.close(); pst1 = null; if (pst2 != null) pst2.close(); pst2 = null; } catch (Exception ex) { MainFrame.appendStatusText("Can't close database connection."); } } } | private BinaryDocument documentFor(String code, String type, int diagramIndex) { code = code.replaceAll("\n", "").replaceAll("\t", "").trim().replaceAll(" ", "%20"); StringBuilder builder = new StringBuilder("http://yuml.me/diagram/"); builder.append(type).append("/"); builder.append(code); URL url; try { url = new URL(builder.toString()); String name = "uml" + diagramIndex + ".png"; diagramIndex++; BinaryDocument pic = new BinaryDocument(name, "image/png"); IOUtils.copy(url.openStream(), pic.getContent().getOutputStream()); return pic; } catch (MalformedURLException e) { throw ManagedIOException.manage(e); } catch (IOException e) { throw ManagedIOException.manage(e); } } | 885,451 |
0 | public GridDirectoryList(URL url) throws McIDASException { try { urlc = (AddeURLConnection) url.openConnection(); inputStream = new DataInputStream(new BufferedInputStream(urlc.getInputStream())); } catch (IOException e) { throw new McIDASException("Error opening URL for grids:" + e); } readDirectory(); } | public void testStopPoll() throws Exception { for (int i = 0; i < 500; i++) index(masterClient, "id", i, "name", "name = " + i); masterClient.commit(); NamedList masterQueryRsp = query("*:*", masterClient); SolrDocumentList masterQueryResult = (SolrDocumentList) masterQueryRsp.get("response"); assertEquals(500, masterQueryResult.getNumFound()); Thread.sleep(3000); NamedList slaveQueryRsp = query("*:*", slaveClient); SolrDocumentList slaveQueryResult = (SolrDocumentList) slaveQueryRsp.get("response"); assertEquals(500, slaveQueryResult.getNumFound()); String cmp = TestDistributedSearch.compare(masterQueryResult, slaveQueryResult, 0, null); assertEquals(null, cmp); String masterUrl = "http://localhost:" + slaveJetty.getLocalPort() + "/solr/replication?command=disablepoll"; URL url = new URL(masterUrl); InputStream stream = url.openStream(); try { stream.close(); } catch (IOException e) { } index(masterClient, "id", 501, "name", "name = " + 501); masterClient.commit(); Thread.sleep(3000); slaveQueryRsp = query("*:*", slaveClient); slaveQueryResult = (SolrDocumentList) slaveQueryRsp.get("response"); assertEquals(500, slaveQueryResult.getNumFound()); slaveQueryRsp = query("*:*", masterClient); slaveQueryResult = (SolrDocumentList) slaveQueryRsp.get("response"); assertEquals(501, slaveQueryResult.getNumFound()); } | 885,452 |
0 | public void run() { try { if (sync == SyncType.SyncSpaced || sync == SyncType.Spaced) { Thread.sleep(spaceMillis); } URL url = new URL(surl + "&requestId=" + runnumber); long t0 = System.currentTimeMillis(); InputStream in = url.openStream(); transfer(in, new FileOutputStream(new File(outputFolder, "" + runnumber + ".png"))); BufferedImage image = ImageIO.read(new File(outputFolder, "" + runnumber + ".png")); status.score(runnumber, System.currentTimeMillis() - t0); ImageIO.write(image, "png", new FileOutputStream(new File(outputFolder, "" + runnumber + ".png"))); if (false) { int whiteCount = 0; for (int i = 0; i < image.getWidth(); i++) { for (int j = 0; j < image.getHeight(); j++) { whiteCount += image.getRGB(i, j) == -1 ? 1 : 0; } } System.err.println("##" + runnumber + "#: " + whiteCount); if (whiteCount < 227564) { System.err.println("whiteCount fails!!!!"); System.err.println("whiteCount fails!!!!"); System.exit(0); } } } catch (Exception ex) { System.err.println("##" + runnumber + "#: Exception!!! ###"); ex.printStackTrace(); status.score(runnumber, -999); } } | private void copyValidFile(File file, int cviceni) { try { String filename = String.format("%s%s%02d%s%s", validovane, File.separator, cviceni, File.separator, file.getName()); boolean copy = false; File newFile = new File(filename); if (newFile.exists()) { if (file.lastModified() > newFile.lastModified()) copy = true; else copy = false; } else { newFile.createNewFile(); copy = true; } if (copy) { String EOL = "" + (char) 0x0D + (char) 0x0A; FileReader fr = new FileReader(file); BufferedReader br = new BufferedReader(fr); FileWriter fw = new FileWriter(newFile); String line; while ((line = br.readLine()) != null) fw.write(line + EOL); br.close(); fw.close(); newFile.setLastModified(file.lastModified()); } } catch (FileNotFoundException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } } | 885,453 |
1 | @SuppressWarnings("static-access") @RequestMapping(value = "/upload/upload.html", method = RequestMethod.POST) protected void save(HttpServletRequest request, HttpServletResponse response) throws ServletException { UPLOAD_DIRECTORY = uploadDiretory(); File diretorioUsuario = new File(UPLOAD_DIRECTORY); boolean diretorioCriado = false; if (!diretorioUsuario.exists()) { diretorioCriado = diretorioUsuario.mkdir(); if (!diretorioCriado) throw new RuntimeException("Não foi possível criar o diretório do usuário"); } PrintWriter writer = null; InputStream is = null; FileOutputStream fos = null; try { writer = response.getWriter(); } catch (IOException ex) { System.err.println(FileUploadController.class.getName() + "has thrown an exception: " + ex.getMessage()); } String filename = request.getHeader("X-File-Name"); try { is = request.getInputStream(); fos = new FileOutputStream(new File(UPLOAD_DIRECTORY + filename)); IOUtils.copy(is, fos); response.setStatus(response.SC_OK); writer.print("{success: true}"); } catch (FileNotFoundException ex) { response.setStatus(response.SC_INTERNAL_SERVER_ERROR); writer.print("{success: false}"); System.err.println(FileUploadController.class.getName() + "has thrown an exception: " + ex.getMessage()); } catch (IOException ex) { response.setStatus(response.SC_INTERNAL_SERVER_ERROR); writer.print("{success: false}"); System.err.println(FileUploadController.class.getName() + "has thrown an exception: " + ex.getMessage()); } finally { try { fos.close(); is.close(); } catch (IOException ignored) { } } writer.flush(); writer.close(); } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 885,454 |
0 | @Override protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { final Map<String, String> fileAttr = new HashMap<String, String>(); boolean download = false; String dw = req.getParameter("d"); if (StringUtils.isNotEmpty(dw) && StringUtils.equals(dw, "true")) { download = true; } final ByteArrayOutputStream imageOutputStream = new ByteArrayOutputStream(DEFAULT_CONTENT_LENGTH_SIZE); InputStream imageInputStream = null; try { imageInputStream = getImageAsStream(req, fileAttr); IOUtils.copy(imageInputStream, imageOutputStream); resp.setHeader("Cache-Control", "no-store"); resp.setHeader("Pragma", "no-cache"); resp.setDateHeader("Expires", 0); resp.setContentType(fileAttr.get("mimetype")); if (download) { resp.setHeader("Content-Disposition", "attachment; filename=\"" + fileAttr.get("filename") + "\""); } final ServletOutputStream responseOutputStream = resp.getOutputStream(); responseOutputStream.write(imageOutputStream.toByteArray()); responseOutputStream.flush(); responseOutputStream.close(); } catch (Exception e) { e.printStackTrace(); resp.setContentType("text/html"); resp.getWriter().println("<h1>Sorry... cannot find document</h1>"); } finally { IOUtils.closeQuietly(imageInputStream); IOUtils.closeQuietly(imageOutputStream); } } | @Override public void onCreate(Bundle savedInstanceState) { super.onCreate(savedInstanceState); setContentView(R.layout.main); mTextView = (TextView) findViewById(R.id.textView001); mButton = (Button) findViewById(R.id.Button001); tm = (TelephonyManager) this.getSystemService(Context.TELEPHONY_SERVICE); mButton.setOnClickListener(new Button.OnClickListener() { @Override public void onClick(View v) { GsmCellLocation gcl = (GsmCellLocation) tm.getCellLocation(); int cid = gcl.getCid(); int lac = gcl.getLac(); int mcc = Integer.valueOf(tm.getNetworkOperator().substring(0, 3)); int mnc = Integer.valueOf(tm.getNetworkOperator().substring(3, 5)); try { JSONObject holder = new JSONObject(); holder.put("version", "1.1.0"); holder.put("host", "maps.google.com"); holder.put("request_address", true); JSONArray array = new JSONArray(); JSONObject data = new JSONObject(); data.put("cell_id", cid); data.put("location_area_code", lac); data.put("mobile_country_code", mcc); data.put("mobile_network_code", mnc); array.put(data); holder.put("cell_towers", array); DefaultHttpClient client = new DefaultHttpClient(); HttpPost post = new HttpPost("http://www.google.com/loc/json"); StringEntity se = new StringEntity(holder.toString()); post.setEntity(se); HttpResponse resp = client.execute(post); HttpEntity entity = resp.getEntity(); BufferedReader br = new BufferedReader(new InputStreamReader(entity.getContent())); StringBuffer sb = new StringBuffer(); String result = br.readLine(); while (result != null) { sb.append(result); result = br.readLine(); } JSONObject jsonObject = new JSONObject(sb.toString()); JSONObject jsonObject1 = new JSONObject(jsonObject.getString("location")); getAddress(jsonObject1.getString("latitude"), jsonObject1.getString("longitude")); } catch (Exception e) { } } }); } | 885,455 |
1 | public void rename(String virtualWiki, String oldTopicName, String newTopicName) throws Exception { Connection conn = DatabaseConnection.getConnection(); try { boolean commit = false; conn.setAutoCommit(false); try { PreparedStatement pstm = conn.prepareStatement(STATEMENT_RENAME); try { pstm.setString(1, newTopicName); pstm.setString(2, oldTopicName); pstm.setString(3, virtualWiki); if (pstm.executeUpdate() == 0) throw new SQLException("Unable to rename topic " + oldTopicName + " on wiki " + virtualWiki); } finally { pstm.close(); } doUnlockTopic(conn, virtualWiki, oldTopicName); doRenameAllVersions(conn, virtualWiki, oldTopicName, newTopicName); commit = true; } finally { if (commit) conn.commit(); else conn.rollback(); } } finally { conn.close(); } } | public void updateSuccessStatus(ArrayList<THLEventStatus> succeededEvents, ArrayList<THLEventStatus> skippedEvents) throws THLException { Statement stmt = null; PreparedStatement pstmt = null; try { conn.setAutoCommit(false); if (succeededEvents != null && succeededEvents.size() > 0) { stmt = conn.createStatement(); String seqnoList = buildCommaSeparatedList(succeededEvents); stmt.executeUpdate("UPDATE " + history + " SET status = " + THLEvent.COMPLETED + ", processed_tstamp = " + conn.getNowFunction() + " WHERE seqno in " + seqnoList); } if (skippedEvents != null && skippedEvents.size() > 0) { pstmt = conn.prepareStatement("UPDATE " + history + " SET status = ?, comments = ?," + " processed_tstamp = ? WHERE seqno = ?"); Timestamp now = new Timestamp(System.currentTimeMillis()); for (THLEventStatus event : skippedEvents) { pstmt.setShort(1, THLEvent.SKIPPED); pstmt.setString(2, truncate(event.getException() != null ? event.getException().getMessage() : "Unknown event failure", commentLength)); pstmt.setTimestamp(3, now); pstmt.setLong(4, event.getSeqno()); pstmt.addBatch(); } pstmt.executeBatch(); pstmt.close(); } conn.commit(); } catch (SQLException e) { THLException exception = new THLException("Failed to update events status"); exception.initCause(e); try { conn.rollback(); } catch (SQLException e1) { THLException exception2 = new THLException("Failed to rollback after failure while updating events status"); e1.initCause(exception); exception2.initCause(e1); exception = exception2; } throw exception; } finally { if (stmt != null) { try { stmt.close(); } catch (SQLException ignore) { } } if (pstmt != null) { try { pstmt.close(); } catch (SQLException ignore) { } } try { conn.setAutoCommit(true); } catch (SQLException ignore) { } } } | 885,456 |
0 | @Override public int updateStatement(String sql) { Statement statement = null; try { statement = getConnection().createStatement(); return statement.executeUpdate(sql); } catch (SQLException e) { try { getConnection().rollback(); } catch (SQLException e1) { log.error(e1.getMessage(), e1); } log.error(e.getMessage(), e); return 0; } finally { try { statement.close(); getConnection().close(); } catch (SQLException e) { log.error(e.getMessage(), e); } } } | public Vector<Question> reload() throws IOException { Vector<Question> questions = new Vector<Question>(); InputStream is = url.openStream(); BufferedReader br = new BufferedReader(new InputStreamReader(is)); shortName = br.readLine(); if (shortName != null && shortName.equals("SHORTNAME")) { shortName = br.readLine(); author = br.readLine(); if (author != null && author.equals("AUTHOR")) { author = br.readLine(); description = br.readLine(); if (description != null && description.equals("DESCRIPTION")) { description = br.readLine(); try { questions = QuestionLoader.getQuestions(br); } catch (IOException ioe) { ioe.printStackTrace(); throw ioe; } finally { br.close(); is.close(); } } else { throw new IllegalArgumentException(); } } else { throw new IllegalArgumentException(); } } else { throw new IllegalArgumentException(); } return questions; } | 885,457 |
1 | public static boolean unzip_and_merge(String infile, String outfile) { try { BufferedOutputStream dest = null; FileInputStream fis = new FileInputStream(infile); ZipInputStream zis = new ZipInputStream(new BufferedInputStream(fis)); FileOutputStream fos = new FileOutputStream(outfile); dest = new BufferedOutputStream(fos, BUFFER); while (zis.getNextEntry() != null) { int count; byte data[] = new byte[BUFFER]; while ((count = zis.read(data, 0, BUFFER)) != -1) dest.write(data, 0, count); dest.flush(); } dest.close(); zis.close(); } catch (Exception e) { e.printStackTrace(); return false; } return true; } | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 885,458 |
0 | public void convert(File file, String fromEncoding, String toEncoding) throws IOException { InputStream in = new FileInputStream(file); StringWriter cache = new StringWriter(); Reader reader = new InputStreamReader(in, fromEncoding); char[] buffer = new char[128]; int read; while ((read = reader.read(buffer)) > -1) { cache.write(buffer, 0, read); } reader.close(); in.close(); Log.warn(this, "read from file " + file + " (" + fromEncoding + "):" + cache); OutputStream out = new FileOutputStream(file); OutputStreamWriter writer = new OutputStreamWriter(out, toEncoding); writer.write(cache.toString()); cache.close(); writer.close(); out.close(); } | @Override public void parse() throws IOException { URL url = new URL(getDataUrl()); URLConnection con = url.openConnection(); BufferedReader bStream = new BufferedReader(new InputStreamReader(con.getInputStream())); String str; while ((str = bStream.readLine()) != null) { String[] tokens = str.split(","); CurrencyUnit unit = new CurrencyUnit(tokens[1], Float.valueOf(tokens[3]), Integer.valueOf(tokens[2])); this.set.add(unit); } } | 885,459 |
0 | public Object sendObjectRequestToSpecifiedServer(java.lang.String serverName, java.lang.String servletName, java.lang.Object request) { Object reqxml = null; org.jdom.Document retdoc = null; String myurl = java.util.prefs.Preferences.systemRoot().get("serverurl", ""); String myport = java.util.prefs.Preferences.systemRoot().get("portno", "8080"); if (myport == null || myport.trim().equals("")) { myport = "80"; } if (this.serverURL == null) { try { java.net.URL codebase = newgen.presentation.NewGenMain.getAppletInstance().getCodeBase(); if (codebase != null) serverURL = codebase.getHost(); else serverURL = "localhost"; } catch (Exception exp) { exp.printStackTrace(); serverURL = "localhost"; } newgen.presentation.component.IPAddressPortNoDialog ipdig = new newgen.presentation.component.IPAddressPortNoDialog(myurl, myport); ipdig.show(); serverURL = myurl = ipdig.getIPAddress(); myport = ipdig.getPortNo(); java.util.prefs.Preferences.systemRoot().put("serverurl", serverURL); java.util.prefs.Preferences.systemRoot().put("portno", myport); System.out.println(serverURL); } try { java.net.URL url = new java.net.URL("http://" + serverName + ":" + myport + "/newgenlibctxt/" + servletName); java.net.URLConnection urlconn = (java.net.URLConnection) url.openConnection(); urlconn.setDoOutput(true); java.io.OutputStream os = urlconn.getOutputStream(); java.util.zip.CheckedOutputStream cos = new java.util.zip.CheckedOutputStream(os, new java.util.zip.Adler32()); java.util.zip.GZIPOutputStream gop = new java.util.zip.GZIPOutputStream(cos); java.io.ObjectOutputStream dos = new java.io.ObjectOutputStream(gop); dos.writeObject(request); dos.flush(); dos.close(); java.io.InputStream ios = urlconn.getInputStream(); java.util.zip.CheckedInputStream cis = new java.util.zip.CheckedInputStream(ios, new java.util.zip.Adler32()); java.util.zip.GZIPInputStream gip = new java.util.zip.GZIPInputStream(cis); java.io.ObjectInputStream br = new java.io.ObjectInputStream(gip); reqxml = br.readObject(); } catch (Exception exp) { exp.printStackTrace(System.out); System.out.println("Exception in Servlet Connector: " + exp); } return reqxml; } | private void addPlugin(URL url) throws IOException { logger.debug("Adding plugin with URL {}", url); InputStream in = url.openStream(); try { Properties properties = new Properties(); properties.load(in); plugins.add(new WtfPlugin(properties)); } finally { in.close(); } } | 885,460 |
0 | public int procesar() { int mas = 0; String uriOntologia = "", source = "", uri = ""; String fichOrigenHTML = "", fichOrigenLN = ""; String ficheroOutOWL = ""; md5 firma = null; StringTokenV2 entra = null, entra2 = null, entra3 = null; FileInputStream lengNat = null; BufferedInputStream lengNat2 = null; DataInputStream entradaLenguajeNatural = null; FileWriter salOWL = null; BufferedWriter salOWL2 = null; PrintWriter salidaOWL = null; String sujeto = "", verbo = "", CD = "", CI = "", fraseOrigen = ""; StringTokenV2 token2; boolean bandera = false; OntClass c = null; OntClass cBak = null; String claseTrabajo = ""; String nombreClase = "", nombrePropiedad = "", variasPalabras = ""; int incre = 0, emergencia = 0; String lineaSalida = ""; String[] ontologia = new String[5]; ontologia[0] = "http://www.criado.info/owl/vertebrados_es.owl#"; ontologia[1] = "http://www.w3.org/2001/sw/WebOnt/guide-src/wine#"; ontologia[2] = "http://www.co-ode.org/ontologies/pizza/2005/10/18/pizza.owl#"; ontologia[3] = "http://www.w3.org/2001/sw/WebOnt/guide-src/food#"; ontologia[4] = "http://www.daml.org/2001/01/gedcom/gedcom#"; String[] ontologiaSource = new String[5]; ontologiaSource[0] = this.directorioMapeo + "\\" + "mapeo_vertebrados_es.xml"; ontologiaSource[1] = this.directorioMapeo + "\\" + "mapeo_wine_es.xml"; ontologiaSource[2] = this.directorioMapeo + "\\" + "mapeo_pizza_es.xml"; ontologiaSource[3] = this.directorioMapeo + "\\" + "mapeo_food_es.xml"; ontologiaSource[4] = this.directorioMapeo + "\\" + "mapeo_parentesco_es.xml"; mapeoIdiomas clasesOntologias; try { if ((entrada = entradaFichero.readLine()) != null) { if (entrada.trim().length() > 10) { entrada2 = new StringTokenV2(entrada.trim(), "\""); if (entrada2.isIncluidaSubcadena("<fichero ontologia=")) { ontologiaOrigen = entrada2.getToken(2); fichOrigenHTML = entrada2.getToken(4); fichOrigenLN = entrada2.getToken(6); if (ontologiaOrigen.equals("VERTEBRADOS")) { source = ontologiaSource[0]; uriOntologia = ontologia[0]; } if (ontologiaOrigen.equals("WINE")) { source = ontologiaSource[1]; uriOntologia = ontologia[1]; } if (ontologiaOrigen.equals("PIZZA")) { source = ontologiaSource[2]; uriOntologia = ontologia[2]; } if (ontologiaOrigen.equals("FOOD")) { source = ontologiaSource[3]; uriOntologia = ontologia[3]; } if (ontologiaOrigen.equals("PARENTESCOS")) { source = ontologiaSource[4]; uriOntologia = ontologia[4]; } firma = new md5(uriOntologia, false); clasesOntologias = new mapeoIdiomas(source); uri = ""; ficheroOutOWL = ""; entra2 = new StringTokenV2(fichOrigenHTML, "\\"); int numToken = entra2.getNumeroTokenTotales(); entra = new StringTokenV2(fichOrigenHTML, " "); if (entra.isIncluidaSubcadena(directorioLocal)) { entra = new StringTokenV2(entra.getQuitar(directorioLocal) + "", " "); uri = entra.getCambiar("\\", "/"); uri = entra.getQuitar(entra2.getToken(numToken)) + ""; entra3 = new StringTokenV2(entra2.getToken(numToken), "."); ficheroOutOWL = entra3.getToken(1) + "_" + firma.toString() + ".owl"; uri = urlPatron + uri + ficheroOutOWL; } entra3 = new StringTokenV2(fichOrigenHTML, "."); ficheroOutOWL = entra3.getToken(1) + "_" + firma.toString() + ".owl"; lineaSalida = "<vistasemantica origen=\"" + fichOrigenLN + "\" destino=\"" + uri + "\" />"; lengNat = new FileInputStream(fichOrigenLN); lengNat2 = new BufferedInputStream(lengNat); entradaLenguajeNatural = new DataInputStream(lengNat2); salOWL = new FileWriter(ficheroOutOWL); salOWL2 = new BufferedWriter(salOWL); salidaOWL = new PrintWriter(salOWL2); while ((entradaInstancias = entradaLenguajeNatural.readLine()) != null) { sujeto = ""; verbo = ""; CD = ""; CI = ""; fraseOrigen = ""; if (entradaInstancias.trim().length() > 10) { entrada2 = new StringTokenV2(entradaInstancias.trim(), "\""); if (entrada2.isIncluidaSubcadena("<oracion sujeto=")) { sujeto = entrada2.getToken(2).trim(); verbo = entrada2.getToken(4).trim(); CD = entrada2.getToken(6).trim(); CI = entrada2.getToken(8).trim(); fraseOrigen = entrada2.getToken(10).trim(); if (sujeto.length() > 0 & verbo.length() > 0 & CD.length() > 0) { bandera = false; c = null; cBak = null; nombreClase = clasesOntologias.getClaseInstancia(CD); if (nombreClase.length() > 0) { bandera = true; } if (bandera) { if (incre == 0) { salidaOWL.write(" <rdf:RDF " + "\n"); salidaOWL.write(" xmlns:j.0=\"" + uriOntologia + "\"" + "\n"); salidaOWL.write(" xmlns:protege=\"http://protege.stanford.edu/plugins/owl/protege#\"" + "\n"); salidaOWL.write(" xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\"" + "\n"); salidaOWL.write(" xmlns:xsd=\"http://www.w3.org/2001/XMLSchema#\"" + "\n"); salidaOWL.write(" xmlns:rdfs=\"http://www.w3.org/2000/01/rdf-schema#\"" + "\n"); salidaOWL.write(" xmlns:owl=\"http://www.w3.org/2002/07/owl#\" " + "\n"); salidaOWL.write(" xmlns=\"" + uri + "#\"" + "\n"); salidaOWL.write(" xml:base=\"" + uri + "\">" + "\n"); salidaOWL.write(" <owl:Ontology rdf:about=\"\">" + "\n"); salidaOWL.write(" <owl:imports rdf:resource=\"" + uriOntologia + "\"/>" + "\n"); salidaOWL.write(" </owl:Ontology>" + "\n"); salidaOWL.flush(); salida.write(lineaSalida + "\n"); salida.flush(); incre = 1; } salidaOWL.write(" <j.0:" + nombreClase + " rdf:ID=\"" + sujeto.toUpperCase() + "\"/>" + "\n"); salidaOWL.write(" <owl:AllDifferent>" + "\n"); salidaOWL.write(" <owl:distinctMembers rdf:parseType=\"Collection\">" + "\n"); salidaOWL.write(" <" + nombreClase + " rdf:about=\"#" + sujeto.toUpperCase() + "\"/>" + "\n"); salidaOWL.write(" </owl:distinctMembers>" + "\n"); salidaOWL.write(" </owl:AllDifferent>" + "\n"); salidaOWL.flush(); bandera = false; } } } } } salidaOWL.write(" </rdf:RDF>" + "\n" + "\n"); salidaOWL.write("<!-- Creado por [html2ws] http://www.luis.criado.org -->" + "\n"); salidaOWL.flush(); } } mas = 1; } else { salida.write("</listaVistasSemanticas>\n"); salida.flush(); salida.close(); bw2.close(); fw2.close(); salidaOWL.close(); entradaFichero.close(); ent2.close(); ent1.close(); mas = -1; } } catch (Exception e) { mas = -2; salida.write("No se encuentra: " + fichOrigen + "\n"); salida.flush(); } return mas; } | public void run() { if (software == null) return; Jvm.hashtable(HKEY).put(software, this); try { software.setException(null); software.setDownloaded(false); software.setDownloadStartTime(System.currentTimeMillis()); try { software.downloadStarted(); } catch (Exception dsx) { } if (software.getDownloadDir() == null) { software.setException(new Exception("The DownloadDir is null.")); software.setDownloadStartTime(0); software.setDownloaded(false); throw software.getException(); } URL url = new URL(software.getURL()); URLConnection con = url.openConnection(); software.setDownloadLength(con.getContentLength()); inputStream = con.getInputStream(); File file = new File(software.getDownloadDir(), software.getURLFilename()); outputStream = new FileOutputStream(file); int totalBytes = 0; byte[] buffer = new byte[8192]; while (!cancelled) { int bytesRead = Jvm.copyPartialStream(inputStream, outputStream, buffer); if (bytesRead == -1) break; totalBytes += bytesRead; try { software.downloadProgress(totalBytes); } catch (Exception dx) { } } if (!cancelled) software.setDownloaded(true); } catch (Exception x) { software.setException(x); software.setDownloadStartTime(0); software.setDownloaded(false); } try { software.downloadComplete(); } catch (Exception dcx) { } Jvm.hashtable(HKEY).remove(software); closeStreams(); } | 885,461 |
0 | static Collection<InetSocketAddress> getAddresses(Context ctx, long userId) throws Exception { AGLog.d(TAG, "Connecting to HTTP service to obtain IP addresses"); String host = (String) ctx.getResources().getText(R.string.gg_webservice_addr); String ver = App.getInstance().getGGClientVersion(); String url = host + "?fmnumber=" + Long.toString(userId) + "&lastmsg=0&version=" + ver; HttpClient httpClient = new DefaultHttpClient(); AGLog.d(TAG, "connecting to http service at " + url); HttpGet request = new HttpGet(url); HttpResponse response = httpClient.execute(request); AGLog.d(TAG, "response status:" + response.getStatusLine().getReasonPhrase()); HttpEntity ent = response.getEntity(); if (ent == null) { AGLog.e(TAG, "No response entity"); throw new ClientProtocolException("No response entity"); } InputStream content = ent.getContent(); BufferedReader reader = new BufferedReader(new InputStreamReader(content)); String line = reader.readLine(); AGLog.d(TAG, "response: " + line); StringTokenizer tokenizer = new StringTokenizer(line, " "); @SuppressWarnings("unused") String status = tokenizer.nextToken(); @SuppressWarnings("unused") String unknown = tokenizer.nextToken(); ArrayList<InetSocketAddress> result = new ArrayList<InetSocketAddress>(); while (tokenizer.hasMoreTokens()) { StringTokenizer addrport = new StringTokenizer(tokenizer.nextToken(), ":"); String addrStr = addrport.nextToken(); if (InetAddressUtils.isIPv4Address(addrStr)) { AGLog.d(TAG, "Address decoded successfully: " + addrStr); } else { AGLog.w(TAG, "Failed to decode address: " + addrStr); continue; } String portStr; if (addrport.hasMoreTokens()) { portStr = addrport.nextToken(); } else { portStr = (String) ctx.getResources().getText(R.string.gg_default_port); } AGLog.d(TAG, "Port decoded successfully: " + portStr); short port = Short.decode(portStr); result.add(new InetSocketAddress(addrStr, port)); } return result; } | private void invokeTest(String queryfile, String target) { try { String query = IOUtils.toString(XPathMarkBenchmarkTest.class.getResourceAsStream(queryfile)).trim(); String args = EXEC_CMD + " \"" + query + "\" \"" + target + '"'; System.out.println("Invoke command: \n " + args); Process proc = Runtime.getRuntime().exec(args, null, benchmarkDir); InputStream is = proc.getInputStream(); File outFile = new File(outDir, queryfile + ".result"); IOUtils.copy(is, new FileOutputStream(outFile)); is.close(); int ret = proc.waitFor(); if (ret != 0) { System.out.println("process exited with value : " + ret); } } catch (IOException ioe) { throw new IllegalStateException(ioe); } catch (InterruptedException irre) { throw new IllegalStateException(irre); } } | 885,462 |
1 | boolean copyFileStructure(File oldFile, File newFile) { if (oldFile == null || newFile == null) return false; File searchFile = newFile; do { if (oldFile.equals(searchFile)) return false; searchFile = searchFile.getParentFile(); } while (searchFile != null); if (oldFile.isDirectory()) { if (progressDialog != null) { progressDialog.setDetailFile(oldFile, ProgressDialog.COPY); } if (simulateOnly) { } else { if (!newFile.mkdirs()) return false; } File[] subFiles = oldFile.listFiles(); if (subFiles != null) { if (progressDialog != null) { progressDialog.addWorkUnits(subFiles.length); } for (int i = 0; i < subFiles.length; i++) { File oldSubFile = subFiles[i]; File newSubFile = new File(newFile, oldSubFile.getName()); if (!copyFileStructure(oldSubFile, newSubFile)) return false; if (progressDialog != null) { progressDialog.addProgress(1); if (progressDialog.isCancelled()) return false; } } } } else { if (simulateOnly) { } else { FileReader in = null; FileWriter out = null; try { in = new FileReader(oldFile); out = new FileWriter(newFile); int count; while ((count = in.read()) != -1) out.write(count); } catch (FileNotFoundException e) { return false; } catch (IOException e) { return false; } finally { try { if (in != null) in.close(); if (out != null) out.close(); } catch (IOException e) { return false; } } } } return true; } | public static void unzipModel(String filename, String tempdir) throws Exception { try { BufferedOutputStream dest = null; FileInputStream fis = new FileInputStream(filename); int BUFFER = 2048; ZipInputStream zis = new ZipInputStream(new BufferedInputStream(fis)); ZipEntry entry; while ((entry = zis.getNextEntry()) != null) { int count; byte data[] = new byte[BUFFER]; FileOutputStream fos = new FileOutputStream(tempdir + entry.getName()); dest = new BufferedOutputStream(fos, BUFFER); while ((count = zis.read(data, 0, BUFFER)) != -1) dest.write(data, 0, count); dest.flush(); dest.close(); } zis.close(); } catch (Exception e) { e.printStackTrace(); throw new Exception("Can not expand model in \"" + tempdir + "\" because:\n" + e.getMessage()); } } | 885,463 |
1 | private String save(UploadedFile imageFile) { try { File saveFld = new File(imageFolder + File.separator + userDisplay.getUser().getUsername()); if (!saveFld.exists()) { if (!saveFld.mkdir()) { logger.info("Unable to create folder: " + saveFld.getAbsolutePath()); return null; } } File tmp = File.createTempFile("img", "img"); IOUtils.copy(imageFile.getInputstream(), new FileOutputStream(tmp)); File thumbnailImage = new File(saveFld + File.separator + UUID.randomUUID().toString() + ".png"); File fullResolution = new File(saveFld + File.separator + UUID.randomUUID().toString() + ".png"); BufferedImage image = ImageIO.read(tmp); Image thumbnailIm = image.getScaledInstance(310, 210, Image.SCALE_SMOOTH); BufferedImage thumbnailBi = new BufferedImage(thumbnailIm.getWidth(null), thumbnailIm.getHeight(null), BufferedImage.TYPE_INT_RGB); Graphics bg = thumbnailBi.getGraphics(); bg.drawImage(thumbnailIm, 0, 0, null); bg.dispose(); ImageIO.write(thumbnailBi, "png", thumbnailImage); ImageIO.write(image, "png", fullResolution); if (!tmp.delete()) { logger.info("Unable to delete: " + tmp.getAbsolutePath()); } String imageId = UUID.randomUUID().toString(); imageBean.addImage(imageId, new ImageRecord(imageFile.getFileName(), fullResolution.getAbsolutePath(), thumbnailImage.getAbsolutePath(), userDisplay.getUser().getUsername())); return imageId; } catch (Throwable t) { logger.log(Level.SEVERE, "Unable to save the image.", t); return null; } } | @Override protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { String arg = req.getParameter("file"); if (arg == null) { resp.sendError(404, "Missing 'file' Arg"); return; } int mfid = NumberUtils.toInt(arg); Object sageFile = MediaFileAPI.GetMediaFileForID(mfid); if (sageFile == null) { resp.sendError(404, "Sage File not found " + mfid); return; } int seconds = NumberUtils.toInt(req.getParameter("ss"), -1); long offset = NumberUtils.toLong(req.getParameter("sb"), -1); if (seconds < 0 && offset < 0) { resp.sendError(501, "Missing 'ss' or 'sb' args"); return; } int width = NumberUtils.toInt(req.getParameter("w"), 320); int height = NumberUtils.toInt(req.getParameter("h"), 320); File dir = new File(Phoenix.getInstance().getUserCacheDir(), "videothumb/" + mfid); if (!dir.exists()) { dir.mkdirs(); } String prefix = ""; if (offset > 0) { prefix = "O" + offset; } else { prefix = "S" + seconds; } File f = new File(dir, prefix + "_" + width + "_" + height + ".jpg").getCanonicalFile(); if (!f.exists()) { try { generateThumbnailNew(sageFile, f, seconds, offset, width, height); } catch (Exception e) { e.printStackTrace(); resp.sendError(503, "Failed to generate thumbnail\n " + e.getMessage()); return; } } if (!f.exists()) { resp.sendError(404, "Missing File: " + f); return; } resp.setContentType("image/jpeg"); resp.setContentLength((int) f.length()); FileInputStream fis = null; try { fis = new FileInputStream(f); OutputStream os = resp.getOutputStream(); IOUtils.copyLarge(fis, os); os.flush(); fis.close(); } catch (Throwable e) { log.error("Failed to send file: " + f); resp.sendError(500, "Failed to get file " + f); } finally { IOUtils.closeQuietly(fis); } } | 885,464 |
0 | @Override public final boolean save() throws RecordException, RecordValidationException, RecordValidationSyntax { if (frozen) { throw new RecordException("The object is frozen."); } boolean toReturn = false; Class<? extends Record> actualClass = this.getClass(); HashMap<String, Integer> columns = getColumns(TableNameResolver.getTableName(actualClass)); Connection conn = ConnectionManager.getConnection(); LoggableStatement pStat = null; try { if (exists()) { doValidations(true); StatementBuilder builder = new StatementBuilder("update " + TableNameResolver.getTableName(actualClass) + " set"); String updates = ""; for (String key : columns.keySet()) { if (!key.equals("id")) { Field f = null; try { f = FieldHandler.findField(actualClass, key); } catch (FieldOrMethodNotFoundException e) { throw new RecordException("Database column name >" + key + "< not found in class " + actualClass.getCanonicalName()); } updates += key + " = :" + key + ", "; builder.set(key, FieldHandler.getValue(f, this)); } } builder.append(updates.substring(0, updates.length() - 2)); builder.append("where id = :id"); builder.set(":id", FieldHandler.getValue(FieldHandler.findField(actualClass, "id"), this)); pStat = builder.getPreparedStatement(conn); log.log(pStat.getQueryString()); int i = pStat.executeUpdate(); toReturn = i == 1; } else { doValidations(false); StatementBuilder builder = new StatementBuilder("insert into " + TableNameResolver.getTableName(actualClass) + " "); String names = ""; String values = ""; for (String key : columns.keySet()) { Field f = null; try { f = FieldHandler.findField(actualClass, key); } catch (FieldOrMethodNotFoundException e) { throw new RecordException("Database column name >" + key + "< not found in class " + actualClass.getCanonicalName()); } if (key.equals("id") && (Integer) FieldHandler.getValue(f, this) == 0) { continue; } names += key + ", "; values += ":" + key + ", "; builder.set(key, f.get(this)); } names = names.substring(0, names.length() - 2); values = values.substring(0, values.length() - 2); builder.append("(" + names + ")"); builder.append("values"); builder.append("(" + values + ")"); pStat = builder.getPreparedStatement(conn); log.log(pStat.getQueryString()); int i = pStat.executeUpdate(); toReturn = i == 1; } if (childList != null) { if (childObjects == null) { childObjects = new HashMap<Class<? extends Record>, Record>(); } for (Class<? extends Record> c : childList.keySet()) { if (childObjects.get(c) != null) { childObjects.get(c).save(); } } } if (childrenList != null) { if (childrenObjects == null) { childrenObjects = new HashMap<Class<? extends Record>, List<? extends Record>>(); } for (Class<? extends Record> c : childrenList.keySet()) { if (childrenObjects.get(c) != null) { for (Record r : childrenObjects.get(c)) { r.save(); } } } } if (relatedList != null) { if (childrenObjects == null) { childrenObjects = new HashMap<Class<? extends Record>, List<? extends Record>>(); } for (Class<? extends Record> c : relatedList.keySet()) { if (childrenObjects.get(c) != null) { for (Record r : childrenObjects.get(c)) { r.save(); } } } } return toReturn; } catch (Exception e) { if (e instanceof RecordValidationException) { throw (RecordValidationException) e; } if (e instanceof RecordValidationSyntax) { throw (RecordValidationSyntax) e; } try { conn.rollback(); } catch (SQLException e1) { throw new RecordException("Error executing rollback"); } throw new RecordException(e); } finally { try { if (pStat != null) { pStat.close(); } conn.commit(); conn.close(); } catch (SQLException e) { throw new RecordException("Error closing connection"); } } } | private static void main(String mp3Path) throws IOException { String convPath = "http://android.adinterest.biz/wav2mp3.php?k="; String uri = convPath + mp3Path; URL rssurl = new URL(uri); InputStream is = rssurl.openStream(); BufferedReader br = new BufferedReader(new InputStreamReader(is, "UTF-8")); String buf = ""; while ((buf = br.readLine()) != null) { } is.close(); br.close(); } | 885,465 |
1 | public static String getURL(String urlString, String getData, String postData) { try { if (getData != null) if (!getData.equals("")) urlString += "?" + getData; URL url = new URL(urlString); URLConnection connection = url.openConnection(); if (!postData.equals("")) { connection.setDoOutput(true); PrintWriter out = new PrintWriter(connection.getOutputStream()); out.print(postData); out.close(); } BufferedReader in = new BufferedReader(new InputStreamReader(connection.getInputStream())); int inputLine; String output = ""; while ((inputLine = in.read()) != -1) output += (char) inputLine; in.close(); return output; } catch (Exception e) { return null; } } | public static Set<Municipality> getMunicipios(String pURL) { Set<Municipality> result = new HashSet<Municipality>(); String iniCuerr = "<cuerr>"; String finCuerr = "</cuerr>"; String iniDesErr = "<des>"; String finDesErr = "</des>"; String iniMun = "<muni>"; String finMun = "</muni>"; String iniNomMun = "<nm>"; String finNomMun = "</nm>"; String iniCarto = "<carto>"; String iniCodDelMEH = "<cd>"; String finCodDelMEH = "</cd>"; String iniCodMunMEH = "<cmc>"; String finCodMunMEH = "</cmc>"; String iniCodProvINE = "<cp>"; String finCodProvINE = "</cp>"; String iniCodMunINE = "<cm>"; String finCodMunINE = "</cm>"; boolean error = false; int ini, fin; try { URL url = new URL(pURL); BufferedReader br = new BufferedReader(new InputStreamReader(url.openStream())); String str; Municipality municipio; while ((str = br.readLine()) != null) { if (str.contains(iniCuerr)) { ini = str.indexOf(iniCuerr) + iniCuerr.length(); fin = str.indexOf(finCuerr); if (Integer.parseInt(str.substring(ini, fin)) > 0) error = true; } if (error) { if (str.contains(iniDesErr)) { ini = str.indexOf(iniDesErr) + iniDesErr.length(); fin = str.indexOf(finDesErr); throw (new Exception(str.substring(ini, fin))); } } else { if (str.contains(iniMun)) { municipio = new Municipality(); municipio.setCodemunicipalityine(0); municipio.setCodemunicipalitydgc(0); while ((str = br.readLine()) != null && !str.contains(finMun)) { if (str.contains(iniNomMun)) { ini = str.indexOf(iniNomMun) + iniNomMun.length(); fin = str.indexOf(finNomMun); municipio.setMuniName(str.substring(ini, fin).trim()); } if (str.contains(iniCarto)) { if (str.contains("URBANA")) municipio.setIsurban(true); if (str.contains("RUSTICA")) municipio.setIsrustic(true); } if (str.contains(iniCodDelMEH)) { ini = str.indexOf(iniCodDelMEH) + iniCodDelMEH.length(); fin = str.indexOf(finCodDelMEH); municipio.setCodemunicipalitydgc(municipio.getCodemunicipalitydgc() + Integer.parseInt(str.substring(ini, fin)) * 1000); } if (str.contains(iniCodMunMEH)) { ini = str.indexOf(iniCodMunMEH) + iniCodMunMEH.length(); fin = str.indexOf(finCodMunMEH); municipio.setCodemunicipalitydgc(municipio.getCodemunicipalitydgc() + Integer.parseInt(str.substring(ini, fin))); } if (str.contains(iniCodProvINE)) { ini = str.indexOf(iniCodProvINE) + iniCodProvINE.length(); fin = str.indexOf(finCodProvINE); municipio.setCodemunicipalityine(municipio.getCodemunicipalityine() + Integer.parseInt(str.substring(ini, fin)) * 1000); } if (str.contains(iniCodMunINE)) { ini = str.indexOf(iniCodMunINE) + iniCodMunINE.length(); fin = str.indexOf(finCodMunINE); municipio.setCodemunicipalityine(municipio.getCodemunicipalityine() + Integer.parseInt(str.substring(ini, fin))); } municipio.setDescription(); } result.add(municipio); } } } br.close(); } catch (Exception e) { System.err.println(e); } return result; } | 885,466 |
1 | public static void main(String[] args) { if (args.length == 0) { System.out.println("Specify name of the file, just one entry per line"); System.exit(0); } File inFile = new File(args[0]); BufferedReader myBR = null; File outFile = new File(args[0] + ".xml"); BufferedWriter myBW = null; try { myBR = new BufferedReader(new FileReader(inFile)); myBW = new BufferedWriter(new FileWriter(outFile)); } catch (Exception ex) { System.out.println("IN: " + inFile.getAbsolutePath()); System.out.println("OUT: " + outFile.getAbsolutePath()); ex.printStackTrace(); System.exit(0); } try { String readLine; while ((readLine = myBR.readLine()) != null) { myBW.write("<dbColumn name=\"" + readLine + "\" display=\"" + readLine + "\" panel=\"CENTER\" >"); myBW.write("\n"); myBW.write("<dbType name=\"text\" maxVal=\"10\" defaultVal=\"\" sizeX=\"5\"/>"); myBW.write("\n"); myBW.write("</dbColumn>"); myBW.write("\n"); } myBW.close(); myBR.close(); } catch (Exception ex) { ex.printStackTrace(); System.exit(0); } System.out.println("OUT: " + outFile.getAbsolutePath()); System.out.println("erzeugt"); } | protected static void writeFileToStream(FileWrapper file, String filename, ZipOutputStream zipStream) throws CausedIOException, IOException { InputStream in; try { in = file.getInputStream(); } catch (Exception e) { throw new CausedIOException("Could not obtain InputStream for " + filename, e); } try { IOUtils.copy(in, zipStream); } finally { IOUtils.closeQuietly(in); } } | 885,467 |
0 | public static ObjectID[] sortDecending(ObjectID[] oids) { for (int i = 1; i < oids.length; i++) { ObjectID iId = oids[i]; for (int j = 0; j < oids.length - i; j++) { if (oids[j].getTypePrefix() > oids[j + 1].getTypePrefix()) { ObjectID temp = oids[j]; oids[j] = oids[j + 1]; oids[j + 1] = temp; } } } return oids; } | private void importSources() { InputOutput io = IOProvider.getDefault().getIO("Import Sources", false); io.select(); PrintWriter pw = new PrintWriter(io.getOut()); pw.println("Beginning transaction...."); pw.println("Processing selected files:"); String[][] selectedFiles = getSelectedFiles(pw); if (selectedFiles.length == 0) { pw.println("There are no files to process."); } else { pw.println(new StringBuilder("Importing ").append(selectedFiles.length).append(" files to ").append(group.getDisplayName()).append(" within project ").append(ProjectUtils.getInformation(project).getDisplayName()).toString()); FileObject destFO = group.getRootFolder(); try { String destRootDir = new File(destFO.getURL().toURI()).getAbsolutePath(); if (destFO.canWrite()) { for (String[] s : selectedFiles) { try { File parentDir = new File(new StringBuilder(destRootDir).append(File.separator).append(s[0]).toString()); if (!parentDir.exists()) { parentDir.mkdirs(); } File f = new File(new StringBuilder(destRootDir).append(s[0]).append(File.separator).append(s[1]).toString()); if (!f.exists()) { f.createNewFile(); } FileInputStream fin = null; FileOutputStream fout = null; byte[] b = new byte[1024]; int read = -1; try { File inputFile = new File(new StringBuilder(rootDir).append(s[0]).append(File.separator).append(s[1]).toString()); pw.print(new StringBuilder("\tImporting file:").append(inputFile.getAbsolutePath()).toString()); fin = new FileInputStream(inputFile); fout = new FileOutputStream(f); while ((read = fin.read(b)) != -1) { fout.write(b, 0, read); } pw.println(" ... done"); fin.close(); fout.close(); } catch (FileNotFoundException ex) { DialogDisplayer.getDefault().notify(new NotifyDescriptor.Exception(ex, "Error while importing sources!")); } catch (IOException ex) { DialogDisplayer.getDefault().notify(new NotifyDescriptor.Exception(ex, "Error while importing sources!")); } finally { if (fin != null) { try { fin.close(); } catch (IOException ex) { DialogDisplayer.getDefault().notify(new NotifyDescriptor.Exception(ex, "Error while importing sources!")); } } if (fout != null) { try { fout.close(); } catch (IOException ex) { } } } } catch (IOException ex) { DialogDisplayer.getDefault().notify(new NotifyDescriptor.Exception(ex, "Error while importing sources!")); } } pw.println("Import sources completed successfully."); } else { pw.println("Cannot write to the destination directory." + " Please check the priviledges and try again."); return; } } catch (FileStateInvalidException ex) { DialogDisplayer.getDefault().notify(new NotifyDescriptor.Exception(ex, "Error while importing sources!")); pw.println("Import failed!!"); } catch (URISyntaxException ex) { DialogDisplayer.getDefault().notify(new NotifyDescriptor.Exception(ex, "Error while importing sources!")); pw.println("Import failed!!"); } } } | 885,468 |
0 | void run(String[] args) { InputStream istream = System.in; System.out.println("TradeMaximizer " + version); String filename = parseArgs(args, false); if (filename != null) { System.out.println("Input from: " + filename); try { if (filename.startsWith("http:") || filename.startsWith("ftp:")) { URL url = new URL(filename); istream = url.openStream(); } else istream = new FileInputStream(filename); } catch (IOException ex) { fatalError(ex.toString()); } } List<String[]> wantLists = readWantLists(istream); if (wantLists == null) return; if (options.size() > 0) { System.out.print("Options:"); for (String option : options) System.out.print(" " + option); System.out.println(); } System.out.println(); try { MessageDigest digest = MessageDigest.getInstance("MD5"); for (String[] wset : wantLists) { for (String w : wset) { digest.update((byte) ' '); digest.update(w.getBytes()); } digest.update((byte) '\n'); } System.out.println("Input Checksum: " + toHexString(digest.digest())); } catch (NoSuchAlgorithmException ex) { } parseArgs(args, true); if (iterations > 1 && seed == -1) { seed = System.currentTimeMillis(); System.out.println("No explicit SEED, using " + seed); } if (!(metric instanceof MetricSumSquares) && priorityScheme != NO_PRIORITIES) System.out.println("Warning: using priorities with the non-default metric is normally worthless"); buildGraph(wantLists); if (showMissing && officialNames != null && officialNames.size() > 0) { for (String name : usedNames) officialNames.remove(name); List<String> missing = new ArrayList<String>(officialNames); Collections.sort(missing); for (String name : missing) { System.out.println("**** Missing want list for official name " + name); } System.out.println(); } if (showErrors && errors.size() > 0) { Collections.sort(errors); System.out.println("ERRORS:"); for (String error : errors) System.out.println(error); System.out.println(); } long startTime = System.currentTimeMillis(); graph.removeImpossibleEdges(); List<List<Graph.Vertex>> bestCycles = graph.findCycles(); int bestMetric = metric.calculate(bestCycles); if (iterations > 1) { System.out.println(metric); graph.saveMatches(); for (int i = 0; i < iterations - 1; i++) { graph.shuffle(); List<List<Graph.Vertex>> cycles = graph.findCycles(); int newMetric = metric.calculate(cycles); if (newMetric < bestMetric) { bestMetric = newMetric; bestCycles = cycles; graph.saveMatches(); System.out.println(metric); } else if (verbose) System.out.println("# " + metric); } System.out.println(); graph.restoreMatches(); } long stopTime = System.currentTimeMillis(); displayMatches(bestCycles); if (showElapsedTime) System.out.println("Elapsed time = " + (stopTime - startTime) + "ms"); } | public void run() { try { if (FileDenAccount.loginsuccessful) { host = FileDenAccount.username + " | FileDen.com"; } else { host = "FileDen.com"; uploadFailed(); return; } if (file.length() > 1073741824) { JOptionPane.showMessageDialog(neembuuuploader.NeembuuUploader.getInstance(), "<html><b>" + getClass().getSimpleName() + "</b> " + TranslationProvider.get("neembuuuploader.uploaders.maxfilesize") + ": <b>1GB</b></html>", getClass().getSimpleName(), JOptionPane.ERROR_MESSAGE); uploadFailed(); return; } file_ext = file.getName().substring(file.getName().lastIndexOf(".") + 1); String[] unsupported = new String[] { "html", "htm", "php", "php3", "phtml", "htaccess", "htpasswd", "cgi", "pl", "asp", "aspx", "cfm", "exe", "ade", "adp", "bas", "bat", "chm", "cmd", "com", "cpl", "crt", "hlp", "hta", "inf", "ins", "isp", "jse", "lnk", "mdb", "mde", "msc", "msi", "msp", "mst", "pcd", "pif", "reg", "scr", "sct", "shs", "url", "vbe", "vbs", "wsc", "wsf", "wsh", "shb", "js", "vb", "ws", "mdt", "mdw", "mdz", "shb", "scf", "pl", "pm", "dll" }; for (int i = 0; i < unsupported.length; i++) { if (file_ext.equalsIgnoreCase(unsupported[i])) { file_extension_not_supported = true; break; } } if (file_extension_not_supported) { JOptionPane.showMessageDialog(neembuuuploader.NeembuuUploader.getInstance(), "<html><b>" + getClass().getSimpleName() + "</b> " + TranslationProvider.get("neembuuuploader.uploaders.filetypenotsupported") + ": <b>" + file_ext + "</b></html>", getClass().getSimpleName(), JOptionPane.ERROR_MESSAGE); uploadFailed(); return; } status = UploadStatus.INITIALISING; DefaultHttpClient httpclient = new DefaultHttpClient(); HttpPost httppost = new HttpPost("http://www.fileden.com/upload_old.php"); httppost.setHeader("Cookie", FileDenAccount.getCookies().toString()); MultipartEntity mpEntity = new MultipartEntity(HttpMultipartMode.BROWSER_COMPATIBLE); mpEntity.addPart("Filename", new StringBody(file.getName())); mpEntity.addPart("action", new StringBody("upload")); mpEntity.addPart("upload_to", new StringBody("")); mpEntity.addPart("overwrite_option", new StringBody("overwrite")); mpEntity.addPart("thumbnail_size", new StringBody("small")); mpEntity.addPart("create_img_tags", new StringBody("1")); mpEntity.addPart("file0", new MonitoredFileBody(file, uploadProgress)); httppost.setEntity(mpEntity); NULogger.getLogger().log(Level.INFO, "executing request {0}", httppost.getRequestLine()); NULogger.getLogger().info("Now uploading your file into fileden"); status = UploadStatus.UPLOADING; HttpResponse response = httpclient.execute(httppost); HttpEntity resEntity = response.getEntity(); NULogger.getLogger().info(response.getStatusLine().toString()); status = UploadStatus.GETTINGLINK; if (resEntity != null) { uploadresponse = EntityUtils.toString(resEntity); } NULogger.getLogger().info(uploadresponse); downloadlink = CommonUploaderTasks.parseResponse(uploadresponse, "'link':'", "'"); NULogger.getLogger().log(Level.INFO, "Download link : {0}", downloadlink); downURL = downloadlink; httpclient.getConnectionManager().shutdown(); uploadFinished(); } catch (Exception e) { Logger.getLogger(RapidShare.class.getName()).log(Level.SEVERE, null, e); uploadFailed(); } } | 885,469 |
0 | public void elimina(Cliente cli) throws errorSQL, errorConexionBD { System.out.println("GestorCliente.elimina()"); int id = cli.getId(); String sql; Statement stmt = null; try { gd.begin(); sql = "DELETE FROM cliente WHERE cod_cliente =" + id; System.out.println("Ejecutando: " + sql); stmt = gd.getConexion().createStatement(); stmt.executeUpdate(sql); sql = "DELETE FROM usuario WHERE cod_usuario =" + id; System.out.println("Ejecutando: " + sql); stmt = gd.getConexion().createStatement(); stmt.executeUpdate(sql); System.out.println("executeUpdate"); sql = "DELETE FROM persona WHERE id =" + id; System.out.println("Ejecutando: " + sql); stmt = gd.getConexion().createStatement(); stmt.executeUpdate(sql); gd.commit(); System.out.println("commit"); stmt.close(); } catch (SQLException e) { gd.rollback(); throw new errorSQL(e.toString()); } catch (errorConexionBD e) { System.err.println("Error en GestorCliente.elimina(): " + e); } catch (errorSQL e) { System.err.println("Error en GestorCliente.elimina(): " + e); } } | public synchronized String decrypt(String plaintext) throws Exception { MessageDigest md = null; String strhash = new String((new BASE64Decoder()).decodeBuffer(plaintext)); System.out.println("strhash1122 " + strhash); try { md = MessageDigest.getInstance("MD5"); } catch (Exception e) { e.printStackTrace(); } byte raw[] = md.digest(); try { md.update(new String(raw).getBytes("UTF-8")); } catch (Exception e) { e.printStackTrace(); } System.out.println("plain text " + strhash); String strcode = new String(raw); System.out.println("strcode.." + strcode); return strcode; } | 885,470 |
0 | public static void copyFile(String original, String destination) throws Exception { File original_file = new File(original); File destination_file = new File(destination); if (!original_file.exists()) throw new Exception("File with path " + original + " does not exist."); if (destination_file.exists()) throw new Exception("File with path " + destination + " already exists."); FileReader in = new FileReader(original_file); FileWriter out = new FileWriter(destination_file); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); } | public ResourceBundle newBundle(String baseName, Locale locale, String format, ClassLoader loader, boolean reload) throws IllegalAccessException, InstantiationException, IOException { System.out.println("newBundle"); if (baseName == null || locale == null || format == null || loader == null) throw new NullPointerException(); ResourceBundle bundle = null; if (format.equals("xml")) { String bundleName = toBundleName(baseName, locale); String resourceName = toResourceName(bundleName, format); System.out.println(resourceName); InputStream stream = null; if (reload) { URL url = loader.getResource(resourceName); System.out.println(url.toExternalForm()); if (url != null) { URLConnection connection = url.openConnection(); if (connection != null) { connection.setUseCaches(false); stream = connection.getInputStream(); } } } else { stream = loader.getResourceAsStream(resourceName); } if (stream != null) { InputSource source = new InputSource(stream); try { bundle = new XMLResourceBundle(source); } catch (SAXException saxe) { throw new IOException(saxe); } } } return bundle; } | 885,471 |
1 | public static void doVersionCheck(View view) { view.showWaitCursor(); try { URL url = new URL(jEdit.getProperty("version-check.url")); InputStream in = url.openStream(); BufferedReader bin = new BufferedReader(new InputStreamReader(in)); String line; String develBuild = null; String stableBuild = null; while ((line = bin.readLine()) != null) { if (line.startsWith(".build")) develBuild = line.substring(6).trim(); else if (line.startsWith(".stablebuild")) stableBuild = line.substring(12).trim(); } bin.close(); if (develBuild != null && stableBuild != null) { doVersionCheck(view, stableBuild, develBuild); } } catch (IOException e) { String[] args = { jEdit.getProperty("version-check.url"), e.toString() }; GUIUtilities.error(view, "read-error", args); } view.hideWaitCursor(); } | public List<String> query(String query) throws IOException { List<String> list = new LinkedList<String>(); query = URLEncoder.encode(query, "UTF-8"); String queryurl = baseurl + "?type=tuples&lang=itql&format=csv&query=" + query; URL url = new URL(queryurl); BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); String line = reader.readLine(); while (line != null) { list.add(line); line = reader.readLine(); } reader.close(); return list; } | 885,472 |
0 | private static InputStream download(String url) { try { HttpClient httpclient = new DefaultHttpClient(); HttpGet httpget = new HttpGet(url); HttpResponse httpresponse = httpclient.execute(httpget); HttpEntity httpentity = httpresponse.getEntity(); if (httpentity != null) { return httpentity.getContent(); } } catch (Exception e) { Log.e("Android", e.getMessage()); } return null; } | public void unpack(File destDirectory, boolean delete) { if (delete) delete(destDirectory); if (destDirectory.exists()) throw new ContentPackageException("Destination directory already exists."); this.destDirectory = destDirectory; this.manifestFile = new File(destDirectory, MANIFEST_FILE_NAME); try { if (zipInputStream == null) zipInputStream = new ZipInputStream(new FileInputStream(zipFile)); ZipEntry zipEntry; while ((zipEntry = zipInputStream.getNextEntry()) != null) { File destFile = new File(destDirectory, zipEntry.getName()); destFile.getParentFile().mkdirs(); if (!zipEntry.isDirectory()) { BufferedOutputStream output = new BufferedOutputStream(new FileOutputStream(destFile), BUFFER_SIZE); byte[] buffer = new byte[BUFFER_SIZE]; int length; while ((length = zipInputStream.read(buffer, 0, BUFFER_SIZE)) != -1) output.write(buffer, 0, length); output.close(); zipInputStream.closeEntry(); } } zipInputStream.close(); } catch (IOException ex) { throw new ContentPackageException(ex); } } | 885,473 |
0 | public TapdocContextImpl(Registry registry, FileObject javaDom, List<String> javadocLinks, List<String> libraryLocations, FileObject outputDirectory, List<String> tapdocLinks, DocumentGenerator documentGenerator) { this.registry = registry; this.documentGenerator = documentGenerator; try { if (javaDom == null) { javaDom = outputDirectory.resolveFile("tapdoc-javadom.xml"); } if (!javaDom.exists()) { javaDom.createFile(); javaDom.close(); IOUtils.copy(new StringReader("<?xml version=\"1.0\" encoding=\"UTF-8\"?><tapdoc-javadom></tapdoc-javadom>"), javaDom.getContent().getOutputStream()); } this.javaDom = javaDom; this.javadocLinks = javadocLinks; this.tapdocLinks = tapdocLinks; this.libraryLocations = libraryLocations; this.outputDirectory = outputDirectory; } catch (Exception e) { throw new RuntimeException(e); } } | private String calculateCredential(Account account) { MessageDigest md5 = null; try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { return null; } try { md5.update(account.getUsername().getBytes("UTF-8")); md5.update(account.getCryptPassword().getBytes("UTF-8")); md5.update(String.valueOf(account.getObjectId()).getBytes("UTF-8")); md5.update(account.getUid().getBytes("UTF-8")); byte[] digest = md5.digest(); return TextUtils.calculateMD5(digest); } catch (UnsupportedEncodingException e) { return null; } } | 885,474 |
0 | public static void copy(File src, File dest) { try { FileChannel srcChannel = new FileInputStream(src).getChannel(); FileChannel dstChannel = new FileOutputStream(dest).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } catch (IOException e) { } } | public String md5Encode(String pass) { MessageDigest md = null; try { md = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } md.update(pass.getBytes()); byte[] result = md.digest(); return new String(result); } | 885,475 |
1 | public File copyLocalFileAsTempFileInExternallyAccessableDir(String localFileRef) throws IOException { log.debug("copyLocalFileAsTempFileInExternallyAccessableDir"); File f = this.createTempFileInExternallyAccessableDir(); FileChannel srcChannel = new FileInputStream(localFileRef).getChannel(); FileChannel dstChannel = new FileOutputStream(f).getChannel(); log.debug("before transferring via FileChannel from src-inputStream: " + localFileRef + " to dest-outputStream: " + f.getAbsolutePath()); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); log.debug("copyLocalFileAsTempFileInExternallyAccessableDir returning: " + f.getAbsolutePath()); return f; } | @Test public void testWriteAndReadBigger() throws Exception { JCFSFileServer server = new JCFSFileServer(defaultTcpPort, defaultTcpAddress, defaultUdpPort, defaultUdpAddress, dir, 0, 0); JCFS.configureDiscovery(defaultUdpAddress, defaultUdpPort); try { server.start(); RFile file = new RFile("testreadwrite.txt"); RFileOutputStream out = new RFileOutputStream(file); String body = ""; int size = 50 * 1024; for (int i = 0; i < size; i++) { body = body + "a"; } out.write(body.getBytes("utf-8")); out.close(); File expected = new File(dir, "testreadwrite.txt"); assertTrue(expected.isFile()); assertEquals(body.length(), expected.length()); RFileInputStream in = new RFileInputStream(file); byte[] buffer = new byte[body.length()]; int readCount = in.read(buffer); in.close(); assertEquals(body.length(), readCount); String resultRead = new String(buffer, "utf-8"); assertEquals(body, resultRead); } finally { server.stop(); } } | 885,476 |
0 | public static String Md5By32(String plainText) { try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(plainText.getBytes()); byte b[] = md.digest(); int i; StringBuffer buf = new StringBuffer(""); for (int offset = 0; offset < b.length; offset++) { i = b[offset]; if (i < 0) i += 256; if (i < 16) buf.append("0"); buf.append(Integer.toHexString(i)); } return buf.toString(); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); return null; } } | private static void main(String[] args) { try { File f = new File("test.txt"); if (f.exists()) { throw new IOException(f + " already exists. I don't want to overwrite it."); } StraightStreamReader in; char[] cbuf = new char[0x1000]; int read; int totRead; FileOutputStream out = new FileOutputStream(f); for (int i = 0x00; i < 0x100; i++) { out.write(i); } out.close(); in = new StraightStreamReader(new FileInputStream(f)); for (int i = 0x00; i < 0x100; i++) { read = in.read(); if (read != i) { System.err.println("Error: " + i + " read as " + read); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = in.read(cbuf); if (totRead != 0x100) { System.err.println("Simple buffered read did not read the full amount: 0x" + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 7)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); f.delete(); } catch (IOException x) { System.err.println(x.getMessage()); } } | 885,477 |
0 | public SearchHandler(String criteria, int langId) { try { URL url = new URL("http://eiffel.itba.edu.ar/hci/service/Catalog.groovy?method=GetProductListByName&criteria=" + criteria + "&language_id=" + langId); URLConnection urlc = url.openConnection(); urlc.setDoOutput(false); urlc.setAllowUserInteraction(false); BufferedReader br = new BufferedReader(new InputStreamReader(urlc.getInputStream())); String str; StringBuffer sb = new StringBuffer(); while ((str = br.readLine()) != null) { sb.append(str); sb.append("\n"); } br.close(); String response = sb.toString(); if (response == null) { return; } DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance(); DocumentBuilder db = dbf.newDocumentBuilder(); InputSource is = new InputSource(); is.setCharacterStream(new StringReader(response)); Document dom = db.parse(is); NodeList nl = dom.getElementsByTagName("product"); for (int i = 0; i < nl.getLength(); i++) { Element nodes = (Element) nl.item(i); String id = nodes.getAttribute("id").toString(); NodeList name = nodes.getElementsByTagName("name"); NodeList rank2 = nodes.getElementsByTagName("sales_rank"); NodeList price = nodes.getElementsByTagName("price"); NodeList url2 = nodes.getElementsByTagName("image_url"); String nameS = getCharacterDataFromElement((Element) name.item(0)); String rank2S = getCharacterDataFromElement((Element) rank2.item(0)); String priceS = getCharacterDataFromElement((Element) price.item(0)); String url2S = getCharacterDataFromElement((Element) url2.item(0)); list.add(new ProductShort(id, nameS, rank2S, priceS, url2S)); } } catch (Exception e) { e.printStackTrace(); } } | public void generateReport(AllTestsResult atr, AllConvsResult acr, File nwbConvGraph) { ConvResult[] convs = acr.getConvResults(); BufferedReader reader = null; BufferedWriter writer = null; try { reader = new BufferedReader(new FileReader(nwbConvGraph)); writer = new BufferedWriter(new FileWriter(this.annotatedNWBGraph)); String line = null; while ((line = reader.readLine()) != null) { line = line.trim(); if (line.startsWith("id*int")) { writer.write(line + " isTrusted*int chanceCorrect*float isConverter*int \r\n"); } else if (line.matches(NODE_LINE)) { String[] parts = line.split(" "); String rawConvName = parts[1]; String convName = rawConvName.replaceAll("\"", ""); boolean wroteAttributes = false; for (int ii = 0; ii < convs.length; ii++) { ConvResult cr = convs[ii]; if (cr.getShortName().equals(convName)) { int trusted; if (cr.isTrusted()) { trusted = 1; } else { trusted = 0; } writer.write(line + " " + trusted + " " + FormatUtil.formatToPercent(cr.getChanceCorrect()) + " 1 " + "\r\n"); wroteAttributes = true; break; } } if (!wroteAttributes) { writer.write(line + " 1 100.0 0" + "\r\n"); } } else { writer.write(line + "\r\n"); } } } catch (IOException e) { this.log.log(LogService.LOG_ERROR, "Unable to generate Graph Report.", e); try { if (reader != null) reader.close(); } catch (IOException e2) { this.log.log(LogService.LOG_ERROR, "Unable to close graph report stream", e); } } finally { try { if (reader != null) { reader.close(); } if (writer != null) { writer.close(); } } catch (IOException e) { this.log.log(LogService.LOG_ERROR, "Unable to close either graph report reader or " + "writer.", e); e.printStackTrace(); } } } | 885,478 |
1 | public static String encrypt(String message) { try { MessageDigest digest = MessageDigest.getInstance("MD5"); digest.update(message.getBytes()); BASE64Encoder encoder = new BASE64Encoder(); return encoder.encode(digest.digest()); } catch (NoSuchAlgorithmException ex) { ex.printStackTrace(); return null; } } | public String md5(String password) { MessageDigest m = null; try { m = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException ex) { } m.update(password.getBytes(), 0, password.length()); return new BigInteger(1, m.digest()).toString(16); } | 885,479 |
0 | public static String md5(String word) { MessageDigest alg = null; try { alg = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException ex) { Logger.getLogger(ServletUtils.class.getName()).log(Level.SEVERE, null, ex); } alg.reset(); alg.update(word.getBytes()); byte[] digest = alg.digest(); StringBuilder hashedWord = new StringBuilder(); String hx; for (int i = 0; i < digest.length; i++) { hx = Integer.toHexString(0xFF & digest[i]); if (hx.length() == 1) { hx = "0" + hx; } hashedWord.append(hx); } return hashedWord.toString(); } | public static void copyFile(File source, File destination) throws IOException { if (source == null) { String message = Logging.getMessage("nullValue.SourceIsNull"); Logging.logger().severe(message); throw new IllegalArgumentException(message); } if (destination == null) { String message = Logging.getMessage("nullValue.DestinationIsNull"); Logging.logger().severe(message); throw new IllegalArgumentException(message); } FileInputStream fis = null; FileOutputStream fos = null; FileChannel fic, foc; try { fis = new FileInputStream(source); fic = fis.getChannel(); fos = new FileOutputStream(destination); foc = fos.getChannel(); foc.transferFrom(fic, 0, fic.size()); fos.flush(); fis.close(); fos.close(); } finally { WWIO.closeStream(fis, source.getPath()); WWIO.closeStream(fos, destination.getPath()); } } | 885,480 |
0 | public String tranportRemoteUnitToLocalTempFile(String urlStr) throws UnitTransportException { InputStream input = null; BufferedOutputStream bos = null; File tempUnit = null; try { URL url = null; int total = 0; try { url = new URL(urlStr); input = url.openStream(); URLConnection urlConnection; urlConnection = url.openConnection(); total = urlConnection.getContentLength(); } catch (IOException e) { throw new UnitTransportException(String.format("Can't get remote file [%s].", urlStr), e); } String unitName = urlStr.substring(urlStr.lastIndexOf('/') + 1); tempUnit = null; try { if (StringUtils.isNotEmpty(unitName)) tempUnit = new File(CommonUtil.getTempDir(), unitName); else tempUnit = File.createTempFile(CommonUtil.getTempDir(), "tempUnit"); File parent = tempUnit.getParentFile(); FileUtils.forceMkdir(parent); if (!tempUnit.exists()) FileUtils.touch(tempUnit); bos = new BufferedOutputStream(new FileOutputStream(tempUnit)); } catch (FileNotFoundException e) { throw new UnitTransportException(String.format("Can't find temp file [%s].", tempUnit.getAbsolutePath()), e); } catch (IOException e) { throw new UnitTransportException(String.format("Can't create temp file [%s].", tempUnit.getAbsolutePath()), e); } catch (DeployToolException e) { throw new UnitTransportException(String.format("Error when create temp file [%s].", tempUnit), e); } logger.info(String.format("Use [%s] for http unit [%s].", tempUnit.getAbsoluteFile(), urlStr)); int size = -1; try { size = IOUtils.copy(input, bos); bos.flush(); } catch (IOException e) { logger.info(String.format("Error when download [%s] to [%s].", urlStr, tempUnit)); } if (size != total) throw new UnitTransportException(String.format("The file size is not right when download http unit [%s]", urlStr)); } finally { if (input != null) IOUtils.closeQuietly(input); if (bos != null) IOUtils.closeQuietly(bos); } logger.info(String.format("Download unit to [%s].", tempUnit.getAbsolutePath())); return tempUnit.getAbsolutePath(); } | private void Download(String uri) throws MalformedURLException { URL url = new URL(uri); try { bm = BitmapFactory.decodeStream(url.openConnection().getInputStream()); } catch (IOException ex) { bm = getError(); } } | 885,481 |
1 | public void write(File file) throws Exception { if (isInMemory()) { FileOutputStream fout = null; try { fout = new FileOutputStream(file); fout.write(get()); } finally { if (fout != null) { fout.close(); } } } else { File outputFile = getStoreLocation(); if (outputFile != null) { size = outputFile.length(); if (!outputFile.renameTo(file)) { BufferedInputStream in = null; BufferedOutputStream out = null; try { in = new BufferedInputStream(new FileInputStream(outputFile)); out = new BufferedOutputStream(new FileOutputStream(file)); IOUtils.copy(in, out); } finally { if (in != null) { try { in.close(); } catch (IOException e) { } } if (out != null) { try { out.close(); } catch (IOException e) { } } } } } else { throw new FileUploadException("Cannot write uploaded file to disk!"); } } } | public static boolean copyFile(File from, File to, byte[] buf) { if (buf == null) buf = new byte[BUFFER_SIZE]; FileInputStream from_s = null; FileOutputStream to_s = null; try { from_s = new FileInputStream(from); to_s = new FileOutputStream(to); for (int bytesRead = from_s.read(buf); bytesRead != -1; bytesRead = from_s.read(buf)) to_s.write(buf, 0, bytesRead); from_s.close(); from_s = null; to_s.getFD().sync(); to_s.close(); to_s = null; } catch (IOException ioe) { return false; } finally { if (from_s != null) { try { from_s.close(); } catch (IOException ioe) { } } if (to_s != null) { try { to_s.close(); } catch (IOException ioe) { } } } return true; } | 885,482 |
1 | @Override protected RequestLogHandler createRequestLogHandler() { try { File logbackConf = File.createTempFile("logback-access", ".xml"); IOUtils.copy(Thread.currentThread().getContextClassLoader().getResourceAsStream("logback-access.xml"), new FileOutputStream(logbackConf)); RequestLogHandler requestLogHandler = new RequestLogHandler(); RequestLogImpl requestLog = new RequestLogImpl(); requestLog.setFileName(logbackConf.getPath()); requestLogHandler.setRequestLog(requestLog); } catch (FileNotFoundException e) { log.error("Could not create request log handler", e); } catch (IOException e) { log.error("Could not create request log handler", e); } return null; } | private void foundNewVersion() { updater = new UpdaterView(); updater.setLabelText("Initiating Updater..."); updater.setProgress(0); updater.setLocationRelativeTo(null); updater.setVisible(true); URL pathUrl = ClassLoader.getSystemResource("img/icon.png"); String path = pathUrl.toString(); path = path.substring(4, path.length() - 14); try { file = new File(new URI(path)); updaterFile = new File(new URI(path.substring(0, path.length() - 4) + "Updater.jar")); if (updaterFile.exists()) { updaterFile.delete(); } updater.setProgress(25); SwingUtilities.invokeLater(new Runnable() { public void run() { try { FileChannel in = (new FileInputStream(file)).getChannel(); FileChannel out = (new FileOutputStream(updaterFile)).getChannel(); in.transferTo(0, file.length(), out); updater.setProgress(50); in.close(); out.close(); } catch (IOException e) { e.printStackTrace(); } startUpdater(); } }); } catch (URISyntaxException e) { e.printStackTrace(); JOptionPane.showMessageDialog(null, "Update error! Could not create Updater. Check folder permission.", "Error", JOptionPane.ERROR_MESSAGE); } } | 885,483 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public void format(File source, File target) { if (!source.exists()) { throw new IllegalArgumentException("Source '" + source + " doesn't exist"); } if (!source.isFile()) { throw new IllegalArgumentException("Source '" + source + " is not a file"); } target.mkdirs(); String fileExtension = source.getName().substring(source.getName().lastIndexOf(".") + 1); String _target = source.getName().replace(fileExtension, "html"); target = new File(target.getPath() + "/" + _target); try { Reader reader = new FileReader(source); Writer writer = new FileWriter(target); this.format(reader, writer); } catch (Exception e) { e.printStackTrace(); } } | 885,484 |
1 | public Image storeImage(String title, String pathToImage, Map<String, Object> additionalProperties) { File collectionFolder = ProjectManager.getInstance().getFolder(PropertyHandler.getInstance().getProperty("_default_collection_name")); File imageFile = new File(pathToImage); String filename = ""; String format = ""; File copiedImageFile; while (true) { filename = "image" + UUID.randomUUID().hashCode(); if (!DbEntryProvider.INSTANCE.idExists(filename)) { Path path = new Path(pathToImage); format = path.getFileExtension(); copiedImageFile = new File(collectionFolder.getAbsolutePath() + File.separator + filename + "." + format); if (!copiedImageFile.exists()) break; } } try { copiedImageFile.createNewFile(); } catch (IOException e1) { ExceptionHandlingService.INSTANCE.handleException(e1); return null; } BufferedInputStream in = null; BufferedOutputStream out = null; try { in = new BufferedInputStream(new FileInputStream(imageFile), 4096); out = new BufferedOutputStream(new FileOutputStream(copiedImageFile), 4096); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); } catch (FileNotFoundException e) { ExceptionHandlingService.INSTANCE.handleException(e); return null; } catch (IOException e) { ExceptionHandlingService.INSTANCE.handleException(e); return null; } Image image = new ImageImpl(); image.setId(filename); image.setFormat(format); image.setEntryDate(new Date()); image.setTitle(title); image.setAdditionalProperties(additionalProperties); boolean success = DbEntryProvider.INSTANCE.storeNewImage(image); if (success) return image; return null; } | public static void copyFile(File oldFile, File newFile) throws Exception { newFile.getParentFile().mkdirs(); newFile.createNewFile(); FileChannel srcChannel = new FileInputStream(oldFile).getChannel(); FileChannel dstChannel = new FileOutputStream(newFile).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } | 885,485 |
1 | public void testReadNormal() throws Exception { archiveFileManager.executeWith(new TemporaryFileExecutor() { public void execute(File temporaryFile) throws Exception { ZipArchive archive = new ZipArchive(temporaryFile.getPath()); InputStream input = archive.getInputFrom(ARCHIVE_FILE_1); if (input != null) { ByteArrayOutputStream output = new ByteArrayOutputStream(); IOUtils.copyAndClose(input, output); assertEquals(ARCHIVE_FILE_1 + " contents not correct", ARCHIVE_FILE_1_CONTENT, output.toString()); } else { fail("cannot open " + ARCHIVE_FILE_1); } } }); } | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 885,486 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public void createZip(File zipFileName, Vector<File> selected) { try { byte[] buffer = new byte[4096]; ZipOutputStream out = new ZipOutputStream(new BufferedOutputStream(new FileOutputStream(zipFileName), 8096)); out.setLevel(Deflater.BEST_COMPRESSION); out.setMethod(ZipOutputStream.DEFLATED); for (int i = 0; i < selected.size(); i++) { FileInputStream in = new FileInputStream(selected.get(i)); String file = selected.get(i).getPath(); if (file.indexOf("\\") != -1) file = file.substring(file.lastIndexOf(fs) + 1, file.length()); ZipEntry ze = new ZipEntry(file); out.putNextEntry(ze); int len; while ((len = in.read(buffer)) > 0) out.write(buffer, 0, len); out.closeEntry(); in.close(); selected.get(i).delete(); } out.close(); } catch (IllegalArgumentException iae) { iae.printStackTrace(); } catch (FileNotFoundException fnfe) { fnfe.printStackTrace(); } catch (IOException ioe) { ioe.printStackTrace(); } } | 885,487 |
1 | public String genPass() { String salto = "Z1mX502qLt2JTcW9MTDTGBBw8VBQQmY2"; String clave = (int) (Math.random() * 10) + "" + (int) (Math.random() * 10) + "" + (int) (Math.random() * 10) + "" + (int) (Math.random() * 10) + "" + (int) (Math.random() * 10) + "" + (int) (Math.random() * 10) + "" + (int) (Math.random() * 10); password = clave; String claveConSalto = clave + salto; MessageDigest m = null; try { m = MessageDigest.getInstance("MD5"); m.update(claveConSalto.getBytes("utf-8"), 0, claveConSalto.length()); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } catch (UnsupportedEncodingException e) { e.printStackTrace(); } String claveCifrada = new BigInteger(1, m.digest()).toString(16); return claveCifrada + ":" + salto; } | public static boolean validPassword(String password, String passwordInDb) throws NoSuchAlgorithmException, UnsupportedEncodingException { byte[] pwdInDb = hexStringToByte(passwordInDb); byte[] salt = new byte[SALT_LENGTH]; System.arraycopy(pwdInDb, 0, salt, 0, SALT_LENGTH); MessageDigest md = MessageDigest.getInstance("MD5"); md.update(salt); md.update(password.getBytes("UTF-8")); byte[] digest = md.digest(); byte[] digestInDb = new byte[pwdInDb.length - SALT_LENGTH]; System.arraycopy(pwdInDb, SALT_LENGTH, digestInDb, 0, digestInDb.length); if (Arrays.equals(digest, digestInDb)) { return true; } else { return false; } } | 885,488 |
0 | public static int validate(String url) { HttpURLConnection con = null; try { con = (HttpURLConnection) (new URL(url)).openConnection(); } catch (MalformedURLException ex) { return -1; } catch (IOException ex) { return -2; } try { if (con != null && con.getResponseCode() != 200) { return con.getResponseCode(); } else if (con == null) { return -3; } } catch (IOException ex) { return -4; } return 1; } | @Override public int updateStatus(UserInfo userInfo, String status) throws Exception { OAuthConsumer consumer = SnsConstant.getOAuthConsumer(SnsConstant.SOHU); consumer.setTokenWithSecret(userInfo.getAccessToken(), userInfo.getAccessSecret()); try { URL url = new URL(SnsConstant.SOHU_UPDATE_STATUS_URL); HttpURLConnection request = (HttpURLConnection) url.openConnection(); request.setDoOutput(true); request.setRequestMethod("POST"); HttpParameters para = new HttpParameters(); para.put("status", StringUtils.utf8Encode(status).replaceAll("\\+", "%20")); consumer.setAdditionalParameters(para); consumer.sign(request); OutputStream ot = request.getOutputStream(); ot.write(("status=" + URLEncoder.encode(status, "utf-8")).replaceAll("\\+", "%20").getBytes()); ot.flush(); ot.close(); System.out.println("Sending request..."); request.connect(); System.out.println("Response: " + request.getResponseCode() + " " + request.getResponseMessage()); BufferedReader reader = new BufferedReader(new InputStreamReader(request.getInputStream())); String b = null; while ((b = reader.readLine()) != null) { System.out.println(b); } return SnsConstant.SOHU_UPDATE_STATUS_SUCC_WHAT; } catch (Exception e) { SnsConstant.SOHU_OPERATOR_FAIL_REASON = processException(e.getMessage()); return SnsConstant.SOHU_UPDATE_STATUS_FAIL_WHAT; } } | 885,489 |
1 | public static void main(String[] args) throws Exception { PatternLayout pl = new PatternLayout("%d{ISO8601} %-5p %c: %m\n"); ConsoleAppender ca = new ConsoleAppender(pl); Logger.getRoot().addAppender(ca); Logger.getRoot().setLevel(Level.INFO); Options options = new Options(); options.addOption("p", "put", false, "put a file in the DHT overlay"); options.addOption("g", "get", false, "get a file from the DHT"); options.addOption("r", "remove", false, "remove a file from the DHT"); options.addOption("u", "update", false, "updates the lease"); options.addOption("j", "join", false, "join the DHT overlay"); options.addOption("c", "config", true, "the configuration file"); options.addOption("k", "key", true, "the key to read a file from"); options.addOption("f", "file", true, "the file to read or write"); options.addOption("a", "app", true, "the application ID"); options.addOption("s", "secret", true, "the secret used to hide data"); options.addOption("t", "ttl", true, "how long in seconds data should persist"); CommandLineParser parser = new PosixParser(); CommandLine cmd = parser.parse(options, args); String configFile = null; String mode = null; String secretStr = null; int ttl = 9999; String keyStr = null; String file = null; int appId = 0; if (cmd.hasOption("j")) { mode = "join"; } if (cmd.hasOption("p")) { mode = "put"; } if (cmd.hasOption("g")) { mode = "get"; } if (cmd.hasOption("r")) { mode = "remove"; } if (cmd.hasOption("u")) { mode = "update"; } if (cmd.hasOption("c")) { configFile = cmd.getOptionValue("c"); } if (cmd.hasOption("k")) { keyStr = cmd.getOptionValue("k"); } if (cmd.hasOption("f")) { file = cmd.getOptionValue("f"); } if (cmd.hasOption("s")) { secretStr = cmd.getOptionValue("s"); } if (cmd.hasOption("t")) { ttl = Integer.parseInt(cmd.getOptionValue("t")); } if (cmd.hasOption("a")) { appId = Integer.parseInt(cmd.getOptionValue("a")); } if (mode == null) { System.err.println("ERROR: --put or --get or --remove or --join or --update is required"); HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("DHT", options); System.exit(1); } if (configFile == null) { System.err.println("ERROR: --config is required"); HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("DHT", options); System.exit(1); } Properties conf = new Properties(); conf.load(new FileInputStream(configFile)); DHT dht = new DHT(conf); if (mode.equals("join")) { dht.join(); } else if (mode.equals("put")) { if (file == null) { System.err.println("ERROR: --file is required"); HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("DHT", options); System.exit(1); } if (keyStr == null) { System.err.println("ERROR: --key is required"); HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("DHT", options); System.exit(1); } if (secretStr == null) { System.err.println("ERROR: --secret is required"); HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("DHT", options); System.exit(1); } logger.info("putting file " + file); FileInputStream in = new FileInputStream(file); byte[] tmp = new byte[1000000]; int num = in.read(tmp); byte[] value = new byte[num]; System.arraycopy(tmp, 0, value, 0, num); in.close(); if (dht.put((short) appId, keyStr.getBytes(), value, ttl, secretStr.getBytes()) < 0) { logger.info("There was an error while putting a key-value."); System.exit(0); } System.out.println("Ok!"); } else if (mode.equals("get")) { if (file == null) { System.err.println("ERROR: --file is required"); HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("DHT", options); System.exit(1); } if (keyStr == null) { System.err.println("ERROR: --key is required"); HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("DHT", options); System.exit(1); } logger.info("getting file " + file); ArrayList<byte[]> values = new ArrayList<byte[]>(); if (dht.get((short) appId, keyStr.getBytes(), Integer.MAX_VALUE, values) < 0) { logger.info("There was an error while getting a value."); System.exit(0); } if (values.size() == 0 || values == null) { System.out.println("No values returned."); System.exit(0); } FileOutputStream out = new FileOutputStream(file); System.out.println("Found " + values.size() + " values -- saving the first one only."); out.write(values.get(0)); out.close(); System.out.println("Ok!"); } else if (mode.equals("remove")) { if (keyStr == null) { System.err.println("ERROR: --key is required"); HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("DHT", options); System.exit(1); } if (secretStr == null) { System.err.println("ERROR: --secret is required"); HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("DHT", options); System.exit(1); } logger.info("removing <key,value> for key=" + keyStr); if (dht.remove((short) appId, keyStr.getBytes(), secretStr.getBytes()) < 0) { logger.info("There was an error while removing a key."); System.exit(0); } System.out.println("Ok!"); } else if (mode.equals("update")) { if (keyStr == null) { System.err.println("ERROR: --key is required"); HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("DHT", options); System.exit(1); } logger.info("updating <key,value> for key=" + keyStr); if (dht.updateLease((short) appId, keyStr.getBytes(), ttl) < 0) { logger.info("There was an error while updating data lease."); System.exit(0); } System.out.println("Ok!"); } DHT.getInstance().stop(); } | public void deploy(final File extension) { log.info("Deploying new extension from {}", extension.getPath()); RequestContextHolder.setRequestContext(new RequestContext(SZoneConfig.getDefaultZoneName(), SZoneConfig.getAdminUserName(SZoneConfig.getDefaultZoneName()), new BaseSessionContext())); RequestContextHolder.getRequestContext().resolve(); JarInputStream warIn; try { warIn = new JarInputStream(new FileInputStream(extension), true); } catch (IOException e) { log.warn("Unable to open extension WAR at " + extension.getPath(), e); return; } SAXReader reader = new SAXReader(false); reader.setIncludeExternalDTDDeclarations(false); String extensionPrefix = extension.getName().substring(0, extension.getName().lastIndexOf(".")); File extensionDir = new File(extensionBaseDir, extensionPrefix); extensionDir.mkdirs(); File extensionWebDir = new File(this.extensionWebDir, extensionPrefix); extensionWebDir.mkdirs(); try { for (JarEntry entry = warIn.getNextJarEntry(); entry != null; entry = warIn.getNextJarEntry()) { File inflated = new File(entry.getName().startsWith(infPrefix) ? extensionDir : extensionWebDir, entry.getName()); if (entry.isDirectory()) { log.debug("Creating directory at {}", inflated.getPath()); inflated.mkdirs(); continue; } inflated.getParentFile().mkdirs(); FileOutputStream entryOut = new FileOutputStream(inflated); if (!entry.getName().endsWith(configurationFileExtension)) { log.debug("Inflating file resource to {}", inflated.getPath()); IOUtils.copy(warIn, entryOut); entryOut.close(); continue; } try { final Document document = reader.read(new TeeInputStream(new CloseShieldInputStream(warIn), entryOut, true)); Attribute schema = document.getRootElement().attribute(schemaAttribute); if (schema == null || StringUtils.isBlank(schema.getText())) { log.debug("Inflating XML with unrecognized schema to {}", inflated.getPath()); continue; } if (schema.getText().contains(definitionsSchemaNamespace)) { log.debug("Inflating and registering definition from {}", inflated.getPath()); document.getRootElement().add(new AbstractAttribute() { private static final long serialVersionUID = -7880537136055718310L; public QName getQName() { return new QName(extensionAttr, document.getRootElement().getNamespace()); } public String getValue() { return extension.getName().substring(0, extension.getName().lastIndexOf(".")); } }); definitionModule.addDefinition(document, true); continue; } if (schema.getText().contains(templateSchemaNamespace)) { log.debug("Inflating and registering template from {}", inflated.getPath()); templateService.addTemplate(document, true, zoneModule.getDefaultZone()); continue; } } catch (DocumentException e) { log.warn("Malformed XML file in extension war at " + extension.getPath(), e); return; } } } catch (IOException e) { log.warn("Malformed extension war at " + extension.getPath(), e); return; } finally { try { warIn.close(); } catch (IOException e) { log.warn("Unable to close extension war at " + extension.getPath(), e); return; } RequestContextHolder.clear(); } log.info("Extension deployed successfully from {}", extension.getPath()); } | 885,490 |
0 | public static String encrypt(String plaintext) { MessageDigest md = null; try { md = MessageDigest.getInstance("SHA-1"); } catch (NoSuchAlgorithmException e) { logger.error("NoSuchAlgorithmException:" + e); } try { md.update(plaintext.getBytes("UTF-8")); } catch (UnsupportedEncodingException e) { logger.error("UnsupportedEncodingException:" + e); } byte raw[] = md.digest(); String hash = (new BASE64Encoder()).encode(raw); return hash; } | @Override public int deleteStatement(String sql) { Statement statement = null; try { statement = getConnection().createStatement(); int result = statement.executeUpdate(sql.toString()); if (result == 0) log.warn(sql + " result row count is 0"); getConnection().commit(); return result; } catch (SQLException e) { try { getConnection().rollback(); } catch (SQLException e1) { log.error(e1.getMessage(), e1); } log.error(e.getMessage(), e); throw new RuntimeException(); } finally { try { statement.close(); getConnection().close(); } catch (SQLException e) { log.error(e.getMessage(), e); } } } | 885,491 |
1 | protected static IFile createTempFile(CodeFile codeFile) { IPath path = Util.getAbsolutePathFromCodeFile(codeFile); File file = new File(path.toOSString()); String[] parts = codeFile.getName().split("\\."); String extension = parts[parts.length - 1]; IPath ext = path.addFileExtension(extension); File tempFile = new File(ext.toOSString()); if (tempFile.exists()) { boolean deleted = tempFile.delete(); System.out.println("deleted: " + deleted); } try { boolean created = tempFile.createNewFile(); if (created) { FileOutputStream fos = new FileOutputStream(tempFile); FileInputStream fis = new FileInputStream(file); while (fis.available() > 0) { fos.write(fis.read()); } fis.close(); fos.close(); IFile iFile = Util.getFileFromPath(ext); return iFile; } } catch (IOException e) { e.printStackTrace(); } return null; } | public List<String> generate(String geronimoVersion, String geronimoHome, String instanceNumber) { geronimoRepository = geronimoHome + "/repository"; Debug.logInfo("The WASCE or Geronimo Repository is " + geronimoRepository, module); Classpath classPath = new Classpath(System.getProperty("java.class.path")); List<File> elements = classPath.getElements(); List<String> jar_version = new ArrayList<String>(); String jarPath = null; String jarName = null; String newJarName = null; String jarNameSimple = null; String jarVersion = "1.0"; int lastDash = -1; for (File f : elements) { if (f.exists()) { if (f.isFile()) { jarPath = f.getAbsolutePath(); jarName = f.getName(); String jarNameWithoutExt = (String) jarName.subSequence(0, jarName.length() - 4); lastDash = jarNameWithoutExt.lastIndexOf("-"); if (lastDash > -1) { jarVersion = jarNameWithoutExt.substring(lastDash + 1, jarNameWithoutExt.length()); jarNameSimple = jarNameWithoutExt.substring(0, lastDash); boolean alreadyVersioned = 0 < StringUtil.removeRegex(jarVersion, "[^.0123456789]").length(); if (!alreadyVersioned) { jarVersion = "1.0"; jarNameSimple = jarNameWithoutExt; newJarName = jarNameWithoutExt + "-" + jarVersion + ".jar"; } else { newJarName = jarName; } } else { jarVersion = "1.0"; jarNameSimple = jarNameWithoutExt; newJarName = jarNameWithoutExt + "-" + jarVersion + ".jar"; } jar_version.add(jarNameSimple + "#" + jarVersion); String targetDirectory = geronimoRepository + "/org/ofbiz/" + jarNameSimple + "/" + jarVersion; File targetDir = new File(targetDirectory); if (!targetDir.exists()) { boolean created = targetDir.mkdirs(); if (!created) { Debug.logFatal("Unable to create target directory - " + targetDirectory, module); return null; } } if (!targetDirectory.endsWith("/")) { targetDirectory = targetDirectory + "/"; } String newCompleteJarName = targetDirectory + newJarName; File newJarFile = new File(newCompleteJarName); try { FileChannel srcChannel = new FileInputStream(jarPath).getChannel(); FileChannel dstChannel = new FileOutputStream(newCompleteJarName).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); Debug.log("Created jar file : " + newJarName + " in WASCE or Geronimo repository", module); srcChannel.close(); dstChannel.close(); } catch (IOException e) { Debug.logFatal("Unable to create jar file - " + newJarName + " in WASCE or Geronimo repository (certainly already exists)", module); return null; } } } } List<ComponentConfig.WebappInfo> webApps = ComponentConfig.getAllWebappResourceInfos(); File geronimoWebXml = new File(System.getProperty("ofbiz.home") + "/framework/appserver/templates/" + geronimoVersion + "/geronimo-web.xml"); for (ComponentConfig.WebappInfo webApp : webApps) { if (null != webApp) { parseTemplate(geronimoWebXml, webApp); } } return jar_version; } | 885,492 |
1 | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | public void run() { try { Socket socket = getSocket(); System.out.println("opening socket to " + address + " on " + port); InputStream in = socket.getInputStream(); for (; ; ) { FileTransferHeader header = FileTransferHeader.readHeader(in); if (header == null) break; System.out.println("header: " + header); String[] parts = header.getFilename().getSegments(); String filename; if (parts.length > 0) filename = "dl-" + parts[parts.length - 1]; else filename = "dl-" + session.getScreenname(); System.out.println("writing to file " + filename); long sum = 0; if (new File(filename).exists()) { FileInputStream fis = new FileInputStream(filename); byte[] block = new byte[10]; for (int i = 0; i < block.length; ) { int count = fis.read(block); if (count == -1) break; i += count; } FileTransferChecksum summer = new FileTransferChecksum(); summer.update(block, 0, 10); sum = summer.getValue(); } FileChannel fileChannel = new FileOutputStream(filename).getChannel(); FileTransferHeader outHeader = new FileTransferHeader(header); outHeader.setHeaderType(FileTransferHeader.HEADERTYPE_ACK); outHeader.setIcbmMessageId(cookie); outHeader.setBytesReceived(0); outHeader.setReceivedChecksum(sum); OutputStream socketOut = socket.getOutputStream(); System.out.println("sending header: " + outHeader); outHeader.write(socketOut); for (int i = 0; i < header.getFileSize(); ) { long transferred = fileChannel.transferFrom(Channels.newChannel(in), 0, header.getFileSize() - i); System.out.println("transferred " + transferred); if (transferred == -1) return; i += transferred; } System.out.println("finished transfer!"); fileChannel.close(); FileTransferHeader doneHeader = new FileTransferHeader(header); doneHeader.setHeaderType(FileTransferHeader.HEADERTYPE_RECEIVED); doneHeader.setFlags(doneHeader.getFlags() | FileTransferHeader.FLAG_DONE); doneHeader.setBytesReceived(doneHeader.getBytesReceived() + 1); doneHeader.setIcbmMessageId(cookie); doneHeader.setFilesLeft(doneHeader.getFilesLeft() - 1); doneHeader.write(socketOut); if (doneHeader.getFilesLeft() - 1 <= 0) { socket.close(); break; } } } catch (IOException e) { e.printStackTrace(); return; } } | 885,493 |
1 | public static String encrypt(String value) { MessageDigest messageDigest; byte[] raw = null; try { messageDigest = MessageDigest.getInstance("SHA"); messageDigest.update(((String) value).getBytes("UTF-8")); raw = messageDigest.digest(); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } catch (UnsupportedEncodingException e) { e.printStackTrace(); } return (new BASE64Encoder()).encode(raw); } | public static String encryptMd5(String plaintext) { String hashtext = ""; try { MessageDigest m; m = MessageDigest.getInstance("MD5"); m.reset(); m.update(plaintext.getBytes()); byte[] digest = m.digest(); BigInteger bigInt = new BigInteger(1, digest); hashtext = bigInt.toString(16); while (hashtext.length() < 32) { hashtext = "0" + hashtext; } } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } return hashtext; } | 885,494 |
0 | private static boolean copyFile(File src, File dest) { FileInputStream fis = null; FileOutputStream fos = null; try { fis = new FileInputStream(src); fos = new FileOutputStream(dest); for (int c = fis.read(); c != -1; c = fis.read()) fos.write(c); return true; } catch (FileNotFoundException e) { e.printStackTrace(); return false; } catch (IOException e) { e.printStackTrace(); return false; } finally { if (fis != null) try { fis.close(); } catch (IOException e) { e.printStackTrace(); } if (fos != null) try { fos.close(); } catch (IOException e) { e.printStackTrace(); } } } | public void setPassword(String password) { MessageDigest md; try { md = MessageDigest.getInstance("SHA-256"); md.update(password.getBytes("UTF-8")); byte[] digest = md.digest(); String encodedPassword = Base64.encode(digest); this.password = encodedPassword; } catch (NoSuchAlgorithmException e) { logger.log(Level.SEVERE, "Password creation failed", e); throw new RuntimeException(e); } catch (UnsupportedEncodingException e) { logger.log(Level.SEVERE, "Password creation failed", e); throw new RuntimeException(e); } } | 885,495 |
0 | public static void BubbleSortLong1(long[] num) { boolean flag = true; // set flag to true to begin first pass long temp; // holding variable while (flag) { flag = false; // set flag to false awaiting a possible swap for (int j = 0; j < num.length - 1; j++) { if (num[j] > num[j + 1]) // change to > for ascending sort { temp = num[j]; // swap elements num[j] = num[j + 1]; num[j + 1] = temp; flag = true; // shows a swap occurred } } } } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 885,496 |
1 | public static void copyFile(File source, File dest) throws IOException { FileChannel in = null, out = null; try { in = new FileInputStream(source).getChannel(); out = new FileOutputStream(dest).getChannel(); long size = in.size(); MappedByteBuffer buf = in.map(FileChannel.MapMode.READ_ONLY, 0, size); out.write(buf); } finally { if (in != null) in.close(); if (out != null) out.close(); } } | public static void main(String[] args) throws IOException { long start = System.currentTimeMillis(); FileResourceManager frm = CommonsTransactionContext.configure(new File("C:/tmp")); try { frm.start(); } catch (ResourceManagerSystemException e) { throw new RuntimeException(e); } FileInputStream is = new FileInputStream("C:/Alfresco/WCM_Eval_Guide2.0.pdf"); CommonsTransactionOutputStream os = new CommonsTransactionOutputStream(new Ownerr()); IOUtils.copy(is, os); IOUtils.closeQuietly(is); IOUtils.closeQuietly(os); try { frm.stop(FileResourceManager.SHUTDOWN_MODE_NORMAL); } catch (ResourceManagerSystemException e) { throw new RuntimeException(e); } System.out.println(System.currentTimeMillis() - start); } | 885,497 |
0 | public void run() { RandomAccessFile file = null; InputStream stream = null; try { HttpURLConnection connection = (HttpURLConnection) url.openConnection(); connection.setRequestProperty("Range", "bytes=" + downloaded + "-"); connection.connect(); if (connection.getResponseCode() / 100 != 2) { error(); } int contentLength = connection.getContentLength(); if (contentLength < 1) { error(); } if (size == -1) { size = contentLength; stateChanged(); } file = new RandomAccessFile(saveas, "rw"); file.seek(downloaded); stream = connection.getInputStream(); while (status == DOWNLOADING) { byte buffer[]; if (size - downloaded > MAX_BUFFER_SIZE) { buffer = new byte[MAX_BUFFER_SIZE]; } else { buffer = new byte[size - downloaded]; } int read = stream.read(buffer); if (read == -1) break; file.write(buffer, 0, read); downloaded += read; stateChanged(); } if (status == DOWNLOADING) { status = COMPLETE; stateChanged(); } } catch (Exception e) { e.printStackTrace(); error(); } finally { if (file != null) { try { file.close(); } catch (Exception e) { } } if (stream != null) { try { stream.close(); } catch (Exception e) { } } } } | public URLConnection makeURLConnection(String server) throws IOException { if (server == null) { connection = null; } else { URL url = new URL("http://" + server + "/Bob/QueryXindice"); connection = url.openConnection(); connection.setDoOutput(true); } return connection; } | 885,498 |
1 | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 885,499 |
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