label int64 0 1 | func1 stringlengths 173 53.1k | func2 stringlengths 173 53.1k | id int64 0 901k |
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0 | public static void invokeMvnArtifact(final IProject project, final IModuleExtension moduleExtension, final String location) throws CoreException, InterruptedException, IOException { final Properties properties = new Properties(); properties.put("archetypeGroupId", "org.nexopenframework.plugins"); properties.put("archetypeArtifactId", "openfrwk-archetype-webmodule"); final String version = org.maven.ide.eclipse.ext.Maven2Plugin.getArchetypeVersion(); properties.put("archetypeVersion", version); properties.put("artifactId", moduleExtension.getArtifact()); properties.put("groupId", moduleExtension.getGroup()); properties.put("version", moduleExtension.getVersion()); final ILaunchManager launchManager = DebugPlugin.getDefault().getLaunchManager(); final ILaunchConfigurationType launchConfigurationType = launchManager.getLaunchConfigurationType(LAUNCH_CONFIGURATION_TYPE_ID); final ILaunchConfigurationWorkingCopy workingCopy = launchConfigurationType.newInstance(null, "Creating WEB module using Apache Maven archetype"); File archetypePomDirectory = getDefaultArchetypePomDirectory(); try { final String dfPom = getPomFile(moduleExtension.getGroup(), moduleExtension.getArtifact()); final ByteArrayInputStream bais = new ByteArrayInputStream(dfPom.getBytes()); final File f = new File(archetypePomDirectory, "pom.xml"); OutputStream fous = null; try { fous = new FileOutputStream(f); IOUtils.copy(bais, fous); } finally { try { if (fous != null) { fous.close(); } if (bais != null) { bais.close(); } } catch (final IOException e) { } } String goalName = "archetype:create"; boolean offline = false; try { final Class clazz = Thread.currentThread().getContextClassLoader().loadClass("org.maven.ide.eclipse.Maven2Plugin"); final Maven2Plugin plugin = (Maven2Plugin) clazz.getMethod("getDefault", new Class[0]).invoke(null, new Object[0]); offline = plugin.getPreferenceStore().getBoolean("eclipse.m2.offline"); } catch (final ClassNotFoundException e) { Logger.logException("No class [org.maven.ide.eclipse.ext.Maven2Plugin] in classpath", e); } catch (final NoSuchMethodException e) { Logger.logException("No method getDefault", e); } catch (final Throwable e) { Logger.logException(e); } if (offline) { goalName = new StringBuffer(goalName).append(" -o").toString(); } if (!offline) { final IPreferenceStore ps = Maven2Plugin.getDefault().getPreferenceStore(); final String repositories = ps.getString(Maven2PreferenceConstants.P_M2_REPOSITORIES); final String[] repos = repositories.split(org.maven.ide.eclipse.ext.Maven2Plugin.REPO_SEPARATOR); final StringBuffer sbRepos = new StringBuffer(); for (int k = 0; k < repos.length; k++) { sbRepos.append(repos[k]); if (k != repos.length - 1) { sbRepos.append(","); } } properties.put("remoteRepositories", sbRepos.toString()); } workingCopy.setAttribute(ATTR_GOALS, goalName); workingCopy.setAttribute(ATTR_POM_DIR, archetypePomDirectory.getAbsolutePath()); workingCopy.setAttribute(ATTR_PROPERTIES, convertPropertiesToList(properties)); final long timeout = org.maven.ide.eclipse.ext.Maven2Plugin.getTimeout(); TimeoutLaunchConfiguration.launchWithTimeout(new NullProgressMonitor(), workingCopy, project, timeout); FileUtils.copyDirectoryStructure(new File(archetypePomDirectory, project.getName()), new File(location)); FileUtils.deleteDirectory(new File(location + "/src")); FileUtils.forceDelete(new File(location, "pom.xml")); project.refreshLocal(IResource.DEPTH_INFINITE, null); } finally { FileUtils.deleteDirectory(archetypePomDirectory); Logger.log(Logger.INFO, "Invoked removing of archetype POM directory"); } } | public static synchronized String encrypt(String plaintext) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md = null; md = MessageDigest.getInstance("SHA"); md.update(plaintext.getBytes("UTF-8")); byte raw[] = md.digest(); String hash = (new BASE64Encoder()).encode(raw); return hash; } | 886,000 |
0 | public static void copy(FileInputStream from, FileOutputStream to) throws IOException { FileChannel fromChannel = from.getChannel(); FileChannel toChannel = to.getChannel(); copy(fromChannel, toChannel); fromChannel.close(); toChannel.close(); } | private String doGet(String identifier) throws IOException, MalformedURLException { URL url = new URL(baseurl.toString() + "/" + identifier); logger.debug("get " + url.toString()); HttpURLConnection huc = (HttpURLConnection) (url.openConnection()); BufferedReader reader = new BufferedReader(new InputStreamReader(huc.getInputStream())); StringWriter writer = new StringWriter(); char[] buffer = new char[BUFFER_SIZE]; int count = 0; while ((count = reader.read(buffer)) != -1) { writer.write(buffer, 0, count); } writer.close(); reader.close(); int code = huc.getResponseCode(); logger.debug(" get result" + code); if (code == 200) { return writer.toString(); } else throw new IOException("cannot get " + url.toString()); } | 886,001 |
1 | @SuppressWarnings("unused") private String getMD5(String value) { MessageDigest md5; try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { return ""; } md5.reset(); md5.update(value.getBytes()); byte[] messageDigest = md5.digest(); StringBuffer hexString = new StringBuffer(); for (int i = 0; i < messageDigest.length; i++) { hexString.append(Integer.toHexString(0xFF & messageDigest[i])); } String hashedPassword = hexString.toString(); return hashedPassword; } | public static String encripty(String toEncripty) { if (toEncripty != null) { try { synchronized (toEncripty) { java.security.MessageDigest md = java.security.MessageDigest.getInstance("MD5"); md.update(toEncripty.getBytes()); byte[] hash = md.digest(); StringBuffer hexString = new StringBuffer(); for (int i = 0; i < hash.length; i++) { if ((0xff & hash[i]) < 0x10) hexString.append("0" + Integer.toHexString((0xFF & hash[i]))); else hexString.append(Integer.toHexString(0xFF & hash[i])); } toEncripty = hexString.toString(); } } catch (Exception e) { e.getMessage(); } } return toEncripty; } | 886,002 |
1 | protected String getHashCode(String value) { if (log.isDebugEnabled()) log.debug("getHashCode(...) -> begin"); String retVal = null; try { MessageDigest mdAlgorithm = MessageDigest.getInstance("MD5"); mdAlgorithm.update(value.getBytes()); byte[] digest = mdAlgorithm.digest(); StringBuffer sb = new StringBuffer(); for (int i = 0; i < digest.length; i++) { sb.append(this.toHexString(digest[i])); } retVal = sb.toString(); if (log.isDebugEnabled()) log.debug("getHashCode(...) -> hashcode = " + retVal); } catch (Exception e) { log.error("getHashCode(...) -> error occured generating hashcode ", e); } if (log.isDebugEnabled()) log.debug("getHashCode(...) -> end"); return retVal; } | public static String plainToMD(LoggerCollection loggerCol, String input) { byte[] byteHash = null; MessageDigest md = null; StringBuilder md4result = new StringBuilder(); try { md = MessageDigest.getInstance("MD4", new BouncyCastleProvider()); md.reset(); md.update(input.getBytes("UnicodeLittleUnmarked")); byteHash = md.digest(); for (int i = 0; i < byteHash.length; i++) { md4result.append(Integer.toHexString(0xFF & byteHash[i])); } } catch (UnsupportedEncodingException ex) { loggerCol.logException(CLASSDEBUG, "de.searchworkorange.lib.misc.hash.MD4Hash", Level.FATAL, ex); } catch (NoSuchAlgorithmException ex) { loggerCol.logException(CLASSDEBUG, "de.searchworkorange.lib.misc.hash.MD4Hash", Level.FATAL, ex); } return (md4result.toString()); } | 886,003 |
1 | @Override public void write(OutputStream output) throws IOException, WebApplicationException { final ByteArrayOutputStream baos = new ByteArrayOutputStream(); final GZIPOutputStream gzipOs = new GZIPOutputStream(baos); IOUtils.copy(is, gzipOs); baos.close(); gzipOs.close(); output.write(baos.toByteArray()); } | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 886,004 |
1 | public static String digest(String algorithm, String text) { MessageDigest mDigest = null; try { mDigest = MessageDigest.getInstance(algorithm); mDigest.update(text.getBytes(ENCODING)); } catch (Exception e) { e.printStackTrace(); mDigest = null; } if (mDigest == null) return null; byte[] raw = mDigest.digest(); BASE64Encoder encoder = new BASE64Encoder(); return encoder.encode(raw); } | protected void processRequest(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException { HttpSession session = request.getSession(); session.setMaxInactiveInterval(300); String member_type; String save_type; String action; String notice; if ((String) session.getAttribute("member_type") != null) { member_type = (String) session.getAttribute("member_type"); } else { notice = "You must login first!"; request.setAttribute("notice", notice); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/index.jsp"); dispatcher.forward(request, response); return; } if (request.getParameter("action") != null) { action = (String) request.getParameter("action"); } else { if (member_type.equals("student")) { if (session.getAttribute("person") != null) { Person person = (Person) session.getAttribute("person"); Student student = person.getStudent(); request.setAttribute("student", student); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/member/student.jsp"); dispatcher.forward(request, response); return; } else { notice = "You are not logged in!"; request.setAttribute("notice", notice); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/index.jsp"); dispatcher.forward(request, response); return; } } else if (member_type.equals("alumni")) { if (session.getAttribute("person") != null) { Person person = (Person) session.getAttribute("person"); Alumni alumni = person.getAlumni(); request.setAttribute("alumni", alumni); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/member/alumni.jsp"); dispatcher.forward(request, response); return; } else { notice = "You are not logged in!"; request.setAttribute("notice", notice); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/index.jsp"); dispatcher.forward(request, response); return; } } else if (member_type.equals("hospital")) { if (session.getAttribute("person") != null) { Person person = (Person) session.getAttribute("person"); Hospital hospital = person.getHospital(); request.setAttribute("hospital", hospital); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/member/hospital.jsp"); dispatcher.forward(request, response); return; } else { notice = "You are not logged in!"; request.setAttribute("notice", notice); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/index.jsp"); dispatcher.forward(request, response); return; } } else { notice = "I don't understand your request. Please try again."; request.setAttribute("notice", notice); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/index.jsp"); dispatcher.forward(request, response); return; } } if (action.equals("save_student")) { Person person = (Person) session.getAttribute("person"); Student cur_student = person.getStudent(); int person_id = Integer.parseInt((String) session.getAttribute("person_id")); String fname = request.getParameter("fname"); String lname = request.getParameter("lname"); String address1 = request.getParameter("address1"); String address2 = request.getParameter("address2"); String city = request.getParameter("city"); String state = request.getParameter("state"); String zip = request.getParameter("zip"); String email = request.getParameter("email"); String start_date = request.getParameter("start_year") + "-" + request.getParameter("start_month") + "-01"; String graduation_date = ""; if (!request.getParameter("grad_year").equals("") && !request.getParameter("grad_month").equals("")) { graduation_date = request.getParameter("grad_year") + "-" + request.getParameter("grad_month") + "-01"; } String password = ""; if (request.getParameter("password") != null && !request.getParameter("password").equals("")) { password = request.getParameter("password"); MessageDigest md = null; try { md = MessageDigest.getInstance("MD5"); md.update(password.getBytes("UTF-8")); } catch (Exception x) { notice = "Could not encrypt your password. Please try again."; request.setAttribute("notice", notice); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/member/student.jsp"); dispatcher.forward(request, response); return; } password = (new BASE64Encoder()).encode(md.digest()); } else { password = cur_student.getPassword(); } int is_admin = 0; if (request.getParameter("is_admin") != null) { is_admin = 1; } Student new_student = new Student(fname, lname, address1, address2, city, state, zip, email, password, is_admin, start_date, graduation_date); if (!new_student.getEmail().equals(cur_student.getEmail())) { if (new_student.checkEmailIsRegistered()) { notice = "That email address is already registered!"; request.setAttribute("notice", notice); request.setAttribute("student", new_student); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/member/student.jsp"); dispatcher.forward(request, response); return; } } if (!new_student.updateStudent(person_id)) { notice = "There was an error saving your information. Please try again."; request.setAttribute("notice", notice); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/member/student.jsp"); dispatcher.forward(request, response); return; } Person updated_person = new_student.getPerson(person_id); session.setAttribute("person", updated_person); notice = "Information successfully updated."; request.setAttribute("notice", notice); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/index.jsp"); dispatcher.forward(request, response); return; } else if (action.equals("save_alumni")) { Person person = (Person) session.getAttribute("person"); Alumni cur_alumni = person.getAlumni(); int person_id = Integer.parseInt((String) session.getAttribute("person_id")); String fname = request.getParameter("fname"); String lname = request.getParameter("lname"); String address1 = request.getParameter("address1"); String address2 = request.getParameter("address2"); String city = request.getParameter("city"); String state = request.getParameter("state"); String zip = request.getParameter("zip"); String email = request.getParameter("email"); String company_name = request.getParameter("company_name"); String position = request.getParameter("position"); int mentor = 0; if (request.getParameter("mentor") != null) { mentor = 1; } String graduation_date = request.getParameter("graduation_year") + "-" + request.getParameter("graduation_month") + "-01"; String password = ""; if (request.getParameter("password") != null) { password = request.getParameter("password"); MessageDigest md = null; try { md = MessageDigest.getInstance("MD5"); md.update(password.getBytes("UTF-8")); } catch (Exception x) { notice = "Could not encrypt your password. Please try again."; request.setAttribute("notice", notice); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/member/alumni.jsp"); dispatcher.forward(request, response); return; } password = (new BASE64Encoder()).encode(md.digest()); } else { password = cur_alumni.getPassword(); } int is_admin = 0; if (request.getParameter("is_admin") != null) { is_admin = 1; } Alumni new_alumni = new Alumni(fname, lname, address1, address2, city, state, zip, email, password, is_admin, company_name, position, graduation_date, mentor); if (!new_alumni.getEmail().equals(cur_alumni.getEmail())) { if (new_alumni.checkEmailIsRegistered()) { notice = "That email address is already registered!"; request.setAttribute("notice", notice); request.setAttribute("alumni", new_alumni); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/member/alumni.jsp"); dispatcher.forward(request, response); return; } } if (!new_alumni.updateAlumni(person_id)) { session.setAttribute("alumni", new_alumni); notice = "There was an error saving your information. Please try again."; request.setAttribute("notice", notice); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/member/alumni.jsp"); dispatcher.forward(request, response); return; } Person updated_person = new_alumni.getPerson(person_id); session.setAttribute("person", updated_person); notice = "Information successfully updated."; request.setAttribute("notice", notice); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/index.jsp"); dispatcher.forward(request, response); return; } else if (action.equals("save_hospital")) { Person person = (Person) session.getAttribute("person"); Hospital cur_hospital = person.getHospital(); int person_id = Integer.parseInt((String) session.getAttribute("person_id")); String fname = request.getParameter("fname"); String lname = request.getParameter("lname"); String address1 = request.getParameter("address1"); String address2 = request.getParameter("address2"); String city = request.getParameter("city"); String state = request.getParameter("state"); String zip = request.getParameter("zip"); String email = request.getParameter("email"); String name = request.getParameter("name"); String phone = request.getParameter("phone"); String url = request.getParameter("url"); String password = ""; if (request.getParameter("password") != null && !request.getParameter("password").equals("")) { password = request.getParameter("password"); MessageDigest md = null; try { md = MessageDigest.getInstance("MD5"); md.update(password.getBytes("UTF-8")); } catch (Exception x) { notice = "Could not encrypt your password. Please try again."; request.setAttribute("notice", notice); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/member/hospital.jsp"); dispatcher.forward(request, response); return; } password = (new BASE64Encoder()).encode(md.digest()); } else { password = cur_hospital.getPassword(); } int is_admin = 0; if (request.getParameter("is_admin") != null) { is_admin = 1; } Hospital new_hospital = new Hospital(fname, lname, address1, address2, city, state, zip, email, password, is_admin, name, phone, url); if (!new_hospital.getEmail().equals(cur_hospital.getEmail())) { if (new_hospital.checkEmailIsRegistered()) { notice = "That email address is already registered!"; request.setAttribute("notice", notice); request.setAttribute("hospital", new_hospital); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/member/hospital.jsp"); dispatcher.forward(request, response); return; } } if (!new_hospital.updateHospital(person_id)) { session.setAttribute("hospital", new_hospital); notice = "There was an error saving your information. Please try again."; request.setAttribute("notice", notice); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/member/hospital.jsp"); dispatcher.forward(request, response); return; } Person updated_person = new_hospital.getPerson(person_id); session.setAttribute("person", updated_person); notice = "Information successfully updated."; request.setAttribute("notice", notice); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/index.jsp"); dispatcher.forward(request, response); return; } else { notice = "There was an error with your request. Please try again."; request.setAttribute("notice", notice); RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/member/hospital.jsp"); dispatcher.forward(request, response); return; } } | 886,005 |
0 | private void verifyAvailability() { for (int i = 0; i < servers.size(); i++) { String hostEntry = (String) servers.get(i); String hostString = hostEntry.substring(0, hostEntry.indexOf(":")); String portString = hostEntry.substring(hostEntry.indexOf(":") + 1); String urlLocation = "http://" + hostString + ":" + portString + "/"; String urlData = null; String urlMatch = null; long startTime = System.currentTimeMillis(); URL url = null; HttpURLConnection conn = null; InputStream istream = null; if (serverRequests.get(hostEntry) != null) { String requestData = (String) serverRequests.get(hostEntry); urlData = requestData.substring(0, requestData.indexOf("\t")); try { urlMatch = requestData.substring(requestData.indexOf("\t") + 1); } catch (Exception e) { urlMatch = null; } urlLocation = "http://" + hostString + ":" + portString + "/" + urlData; } try { url = new URL(urlLocation); conn = (HttpURLConnection) url.openConnection(); } catch (Exception e) { System.err.println("*** Warning: Unable to contact host '" + hostEntry + "': " + e.getMessage()); serverTimes.put(hostEntry, "0"); continue; } try { istream = conn.getInputStream(); } catch (Exception e) { try { if (conn.getResponseCode() != 401) { System.err.println("*** Warning: Unable to contact host '" + hostEntry + "': " + e); serverTimes.put(hostEntry, "0"); continue; } } catch (Exception ee) { System.err.println("*** Warning: Unable to contact host '" + hostEntry + "': " + e); serverTimes.put(hostEntry, "0"); continue; } } int response = 501; try { response = conn.getResponseCode(); if (response != 200 && response != 401) { System.err.println("*** Warning: Connection to host '" + hostEntry + "' returns response: " + response); serverTimes.put(hostEntry, "0"); continue; } } catch (Exception e) { System.err.println("*** Warning: Unable to contact host '" + hostString + "' on port '" + portString + "'"); serverTimes.put(hostEntry, "0"); continue; } if (response != 401) { int contentLength = conn.getContentLength(); if (contentLength == -1) { contentLength = 4096; } byte data[] = new byte[contentLength]; int curPos = 0; try { int dataRead = 0; while ((dataRead = istream.read(data, curPos, contentLength - curPos)) != -1) { if (dataRead == 0) { break; } curPos += dataRead; } } catch (Exception e) { System.err.println("*** Warning: Unable to contact host '" + hostEntry + "': Cannot read response from site."); serverTimes.put(hostEntry, "0"); continue; } if (urlMatch != null) { String urlContents = new String(data); data = null; if (urlContents.indexOf(urlMatch) == -1) { System.err.println("*** Warning: Host '" + hostEntry + "' does not match search string. Reports '" + urlContents + "'"); try { istream.close(); conn.disconnect(); } catch (Exception e) { } serverTimes.put(hostEntry, "0"); continue; } } } try { istream.close(); conn.disconnect(); } catch (Exception e) { } serverStatus.put(hostEntry, "1"); String timeResponse = Long.toString(System.currentTimeMillis() - startTime); Debug.log("Response time for '" + hostEntry + "' is " + timeResponse + " ms."); serverTimes.put(hostEntry, timeResponse); } } | public User createUser(Map userData) throws HamboFatalException { DBConnection con = null; try { con = DBServiceManager.allocateConnection(); con.setAutoCommit(false); String userId = (String) userData.get(HamboUser.USER_ID); String sql = "insert into user_UserAccount " + "(userid,firstname,lastname,street,zipcode,city," + "province,country,email,cellph,gender,password," + "language,timezn,birthday,datecreated,lastlogin," + "disabled,wapsigned,ldapInSync,offerings,firstcb) " + "values (?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?)"; PreparedStatement ps = con.prepareStatement(sql); ps.setString(1, userId); ps.setString(2, (String) userData.get(HamboUser.FIRST_NAME)); ps.setString(3, (String) userData.get(HamboUser.LAST_NAME)); ps.setString(4, (String) userData.get(HamboUser.STREET_ADDRESS)); ps.setString(5, (String) userData.get(HamboUser.ZIP_CODE)); ps.setString(6, (String) userData.get(HamboUser.CITY)); ps.setString(7, (String) userData.get(HamboUser.STATE)); ps.setString(8, (String) userData.get(HamboUser.COUNTRY)); ps.setString(9, (String) userData.get(HamboUser.EXTERNAL_EMAIL_ADDRESS)); ps.setString(10, (String) userData.get(HamboUser.MOBILE_NUMBER)); ps.setString(11, (String) userData.get(HamboUser.GENDER)); ps.setString(12, (String) userData.get(HamboUser.PASSWORD)); ps.setString(13, (String) userData.get(HamboUser.LANGUAGE)); ps.setString(14, (String) userData.get(HamboUser.TIME_ZONE)); java.sql.Date date = (java.sql.Date) userData.get(HamboUser.BIRTHDAY); if (date != null) ps.setDate(15, date); else ps.setNull(15, Types.DATE); date = (java.sql.Date) userData.get(HamboUser.CREATED); if (date != null) ps.setDate(16, date); else ps.setNull(16, Types.DATE); date = (java.sql.Date) userData.get(HamboUser.LAST_LOGIN); if (date != null) ps.setDate(17, date); else ps.setNull(17, Types.DATE); Boolean bool = (Boolean) userData.get(HamboUser.DISABLED); if (bool != null) ps.setBoolean(18, bool.booleanValue()); else ps.setBoolean(18, UserAccountInfo.DEFAULT_DISABLED); bool = (Boolean) userData.get(HamboUser.WAP_ACCOUNT); if (bool != null) ps.setBoolean(19, bool.booleanValue()); else ps.setBoolean(19, UserAccountInfo.DEFAULT_WAP_ACCOUNT); bool = (Boolean) userData.get(HamboUser.LDAP_IN_SYNC); if (bool != null) ps.setBoolean(20, bool.booleanValue()); else ps.setBoolean(20, UserAccountInfo.DEFAULT_LDAP_IN_SYNC); bool = (Boolean) userData.get(HamboUser.OFFERINGS); if (bool != null) ps.setBoolean(21, bool.booleanValue()); else ps.setBoolean(21, UserAccountInfo.DEFAULT_OFFERINGS); ps.setString(22, (String) userData.get(HamboUser.COBRANDING_ID)); con.executeUpdate(ps, null); ps = con.prepareStatement(DBUtil.getQueryCurrentOID(con, "user_UserAccount", "newoid")); ResultSet rs = con.executeQuery(ps, null); if (rs.next()) { OID newOID = new OID(rs.getBigDecimal("newoid").doubleValue()); userData.put(HamboUser.OID, newOID); } con.commit(); } catch (Exception ex) { if (con != null) try { con.rollback(); } catch (SQLException sqlex) { } throw new HamboFatalException(MSG_INSERT_FAILED, ex); } finally { if (con != null) try { con.reset(); } catch (SQLException ex) { } if (con != null) con.release(); } return buildUser(userData); } | 886,006 |
0 | private void backupFile(ZipOutputStream out, String base, String fn) throws IOException { String f = FileUtils.getAbsolutePath(fn); base = FileUtils.getAbsolutePath(base); if (!f.startsWith(base)) { Message.throwInternalError(f + " does not start with " + base); } f = f.substring(base.length()); f = correctFileName(f); out.putNextEntry(new ZipEntry(f)); InputStream in = FileUtils.openFileInputStream(fn); IOUtils.copyAndCloseInput(in, out); out.closeEntry(); } | public static Reader getReader(String rPath) { try { URL url = getResource(rPath); if (url != null) return new InputStreamReader(url.openStream()); File file = new File(rPath); if (file.canRead()) return new FileReader(file); } catch (Exception ex) { System.out.println("could not create reader for " + rPath); } return null; } | 886,007 |
0 | @Override public void run() { HttpGet httpGet = null; try { DefaultHttpClient httpClient = new DefaultHttpClient(); DataModel model = DataModel.getInstance(); for (City city : citiesToBeUpdated) { String preferredUnitType = PreferenceManager.getDefaultSharedPreferences(context).getString(context.getString(R.string.settings_units_key), context.getString(R.string.settings_units_default_value)); String codePrefix = city.getCountryName().startsWith("United States") ? GET_PARAM_ZIP_PREFIX : GET_PARAM_CITY_CODE_PREFIX; String requestUri = new String(GET_URL + "?" + GET_PARAM_ACODE_PREFIX + "=" + GET_PARAM_ACODE + "&" + codePrefix + "=" + city.getId() + "&" + GET_PARAM_UNIT_PREFIX + "=" + preferredUnitType); httpGet = new HttpGet(requestUri); HttpResponse response = httpClient.execute(httpGet); if (response.getStatusLine().getStatusCode() == HttpStatus.SC_OK) { processXML(response.getEntity().getContent()); for (ForecastedDay day : forecast) { int pos = day.getImageURL().lastIndexOf('/'); if (pos < 0 || pos + 1 == day.getImageURL().length()) throw new Exception("Invalid image URL"); final String imageFilename = day.getImageURL().substring(pos + 1); File downloadDir = context.getDir(ForecastedDay.DOWNLOAD_DIR, Context.MODE_PRIVATE); File[] imagesFilteredByName = downloadDir.listFiles(new FilenameFilter() { @Override public boolean accept(File dir, String filename) { if (filename.equals(imageFilename)) return true; else return false; } }); if (imagesFilteredByName.length == 0) { httpGet = new HttpGet(day.getImageURL()); response = httpClient.execute(httpGet); if (response.getStatusLine().getStatusCode() == HttpStatus.SC_OK) { BufferedOutputStream bus = null; try { bus = new BufferedOutputStream(new FileOutputStream(downloadDir.getAbsolutePath() + "/" + imageFilename)); response.getEntity().writeTo(bus); } finally { bus.close(); } } } } city.setDays(forecast); city.setLastUpdated(Calendar.getInstance().getTime()); model.saveCity(city); } } } catch (Exception e) { httpGet.abort(); e.printStackTrace(); } finally { handler.sendEmptyMessage(1); } } | public synchronized AbstractBaseObject insert(AbstractBaseObject obj) throws ApplicationException { PreparedStatement preStat = null; StringBuffer sqlStat = new StringBuffer(); MailSetting tmpMailSetting = (MailSetting) ((MailSetting) obj).clone(); synchronized (dbConn) { try { Integer nextID = getNextPrimaryID(); Timestamp currTime = Utility.getCurrentTimestamp(); sqlStat.append("INSERT "); sqlStat.append("INTO MAIL_SETTING(ID, USER_RECORD_ID, PROFILE_NAME, MAIL_SERVER_TYPE, DISPLAY_NAME, EMAIL_ADDRESS, REMEMBER_PWD_FLAG, SPA_LOGIN_FLAG, INCOMING_SERVER_HOST, INCOMING_SERVER_PORT, INCOMING_SERVER_LOGIN_NAME, INCOMING_SERVER_LOGIN_PWD, OUTGOING_SERVER_HOST, OUTGOING_SERVER_PORT, OUTGOING_SERVER_LOGIN_NAME, OUTGOING_SERVER_LOGIN_PWD, PARAMETER_1, PARAMETER_2, PARAMETER_3, PARAMETER_4, PARAMETER_5, RECORD_STATUS, UPDATE_COUNT, CREATOR_ID, CREATE_DATE, UPDATER_ID, UPDATE_DATE) "); sqlStat.append("VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?) "); preStat = dbConn.prepareStatement(sqlStat.toString(), ResultSet.TYPE_SCROLL_INSENSITIVE, ResultSet.CONCUR_READ_ONLY); setPrepareStatement(preStat, 1, nextID); setPrepareStatement(preStat, 2, tmpMailSetting.getUserRecordID()); setPrepareStatement(preStat, 3, tmpMailSetting.getProfileName()); setPrepareStatement(preStat, 4, tmpMailSetting.getMailServerType()); setPrepareStatement(preStat, 5, tmpMailSetting.getDisplayName()); setPrepareStatement(preStat, 6, tmpMailSetting.getEmailAddress()); setPrepareStatement(preStat, 7, tmpMailSetting.getRememberPwdFlag()); setPrepareStatement(preStat, 8, tmpMailSetting.getSpaLoginFlag()); setPrepareStatement(preStat, 9, tmpMailSetting.getIncomingServerHost()); setPrepareStatement(preStat, 10, tmpMailSetting.getIncomingServerPort()); setPrepareStatement(preStat, 11, tmpMailSetting.getIncomingServerLoginName()); setPrepareStatement(preStat, 12, tmpMailSetting.getIncomingServerLoginPwd()); setPrepareStatement(preStat, 13, tmpMailSetting.getOutgoingServerHost()); setPrepareStatement(preStat, 14, tmpMailSetting.getOutgoingServerPort()); setPrepareStatement(preStat, 15, tmpMailSetting.getOutgoingServerLoginName()); setPrepareStatement(preStat, 16, tmpMailSetting.getOutgoingServerLoginPwd()); setPrepareStatement(preStat, 17, tmpMailSetting.getParameter1()); setPrepareStatement(preStat, 18, tmpMailSetting.getParameter2()); setPrepareStatement(preStat, 19, tmpMailSetting.getParameter3()); setPrepareStatement(preStat, 20, tmpMailSetting.getParameter4()); setPrepareStatement(preStat, 21, tmpMailSetting.getParameter5()); setPrepareStatement(preStat, 22, GlobalConstant.RECORD_STATUS_ACTIVE); setPrepareStatement(preStat, 23, new Integer(0)); setPrepareStatement(preStat, 24, sessionContainer.getUserRecordID()); setPrepareStatement(preStat, 25, currTime); setPrepareStatement(preStat, 26, sessionContainer.getUserRecordID()); setPrepareStatement(preStat, 27, currTime); preStat.executeUpdate(); tmpMailSetting.setID(nextID); tmpMailSetting.setCreatorID(sessionContainer.getUserRecordID()); tmpMailSetting.setCreateDate(currTime); tmpMailSetting.setUpdaterID(sessionContainer.getUserRecordID()); tmpMailSetting.setUpdateDate(currTime); tmpMailSetting.setUpdateCount(new Integer(0)); tmpMailSetting.setCreatorName(UserInfoFactory.getUserFullName(tmpMailSetting.getCreatorID())); tmpMailSetting.setUpdaterName(UserInfoFactory.getUserFullName(tmpMailSetting.getUpdaterID())); dbConn.commit(); return (tmpMailSetting); } catch (SQLException sqle) { log.error(sqle, sqle); } catch (Exception e) { try { dbConn.rollback(); } catch (Exception ex) { } log.error(e, e); } finally { try { preStat.close(); } catch (Exception ignore) { } finally { preStat = null; } } return null; } } | 886,008 |
1 | public void processExplicitSchemaAndWSDL(HttpServletRequest req, HttpServletResponse res) throws IOException, ServletException { HashMap services = configContext.getAxisConfiguration().getServices(); String filePart = req.getRequestURL().toString(); String schema = filePart.substring(filePart.lastIndexOf("/") + 1, filePart.length()); if ((services != null) && !services.isEmpty()) { Iterator i = services.values().iterator(); while (i.hasNext()) { AxisService service = (AxisService) i.next(); InputStream stream = service.getClassLoader().getResourceAsStream("META-INF/" + schema); if (stream != null) { OutputStream out = res.getOutputStream(); res.setContentType("text/xml"); IOUtils.copy(stream, out, true); return; } } } } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 886,009 |
1 | public static void copyFile(FileInputStream source, FileOutputStream target) throws Exception { FileChannel inChannel = source.getChannel(); FileChannel outChannel = target.getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | @Override public void run() { File file = new File(LogHandler.path); FileFilter filter = new FileFilter() { @Override public boolean accept(File file) { GregorianCalendar cal = new GregorianCalendar(); cal.setTime(new Date()); cal.add(GregorianCalendar.DAY_OF_YEAR, -1); String oldTime = LogHandler.dateFormat.format(cal.getTime()); return file.getName().toLowerCase().startsWith(oldTime); } }; File[] list = file.listFiles(filter); if (list.length > 0) { FileInputStream in; int read = 0; byte[] data = new byte[1024]; for (int i = 0; i < list.length; i++) { try { in = new FileInputStream(LogHandler.path + list[i].getName()); GZIPOutputStream out = new GZIPOutputStream(new FileOutputStream(LogHandler.path + list[i].getName() + ".temp")); while ((read = in.read(data, 0, 1024)) != -1) out.write(data, 0, read); in.close(); out.close(); new File(LogHandler.path + list[i].getName() + ".temp").renameTo(new File(LogHandler.path + list[i].getName() + ".gz")); list[i].delete(); } catch (FileNotFoundException e) { TrackingServer.incExceptionCounter(); e.printStackTrace(); } catch (IOException ioe) { } } } } | 886,010 |
0 | private void bokActionPerformed(java.awt.event.ActionEvent evt) { if (this.meetingnamepanel.getEnteredValues().get(0).toString().trim().equals("")) { this.showWarningMessage("Enter Meeting Name"); } else { String[] patlib = newgen.presentation.NewGenMain.getAppletInstance().getPatronLibraryIds(); String xmlreq = newgen.presentation.administration.AdministrationXMLGenerator.getInstance().saveMeetingName("2", meetingnamepanel.getEnteredValues(), patlib); try { java.net.URL url = new java.net.URL(ResourceBundle.getBundle("Administration").getString("ServerURL") + ResourceBundle.getBundle("Administration").getString("ServletSubPath") + "MeetingNameServlet"); java.net.URLConnection urlconn = (java.net.URLConnection) url.openConnection(); urlconn.setDoOutput(true); java.io.OutputStream dos = urlconn.getOutputStream(); dos.write(xmlreq.getBytes()); java.io.InputStream ios = urlconn.getInputStream(); SAXBuilder saxb = new SAXBuilder(); Document retdoc = saxb.build(ios); Element rootelement = retdoc.getRootElement(); if (rootelement.getChild("Error") == null) { this.showInformationMessage(ResourceBundle.getBundle("Administration").getString("DataSavedInDatabase")); } else { this.showErrorMessage(ResourceBundle.getBundle("Administration").getString("ErrorPleaseContactTheVendor")); } } catch (Exception e) { System.out.println(e); } } } | public void doCompress(File[] files, File out, List<String> excludedKeys) { Map<String, File> map = new HashMap<String, File>(); String parent = FilenameUtils.getBaseName(out.getName()); for (File f : files) { CompressionUtil.list(f, parent, map, excludedKeys); } if (!map.isEmpty()) { FileOutputStream fos = null; ArchiveOutputStream aos = null; InputStream is = null; try { fos = new FileOutputStream(out); aos = getArchiveOutputStream(fos); for (Map.Entry<String, File> entry : map.entrySet()) { File file = entry.getValue(); ArchiveEntry ae = getArchiveEntry(file, entry.getKey()); aos.putArchiveEntry(ae); if (file.isFile()) { IOUtils.copy(is = new FileInputStream(file), aos); IOUtils.closeQuietly(is); is = null; } aos.closeArchiveEntry(); } aos.finish(); } catch (IOException ex) { ex.printStackTrace(); } finally { IOUtils.closeQuietly(is); IOUtils.closeQuietly(aos); IOUtils.closeQuietly(fos); } } } | 886,011 |
1 | private static String retrieveVersion(InputStream is) throws RepositoryException { ByteArrayOutputStream buffer = new ByteArrayOutputStream(); try { IOUtils.copy(is, buffer); } catch (IOException e) { throw new RepositoryException(exceptionLocalizer.format("device-repository-file-missing", DeviceRepositoryConstants.VERSION_FILENAME), e); } return buffer.toString().trim(); } | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 886,012 |
0 | public static File unGzip(File infile, boolean deleteGzipfileOnSuccess) throws IOException { GZIPInputStream gin = new GZIPInputStream(new FileInputStream(infile)); File outFile = new File(infile.getParent(), infile.getName().replaceAll("\\.gz$", "")); FileOutputStream fos = new FileOutputStream(outFile); byte[] buf = new byte[100000]; int len; while ((len = gin.read(buf)) > 0) fos.write(buf, 0, len); gin.close(); fos.close(); if (deleteGzipfileOnSuccess) infile.delete(); return outFile; } | @Test public void testTrim() throws Exception { TreeNode ast = TestUtil.readFileInAST("resources/SimpleTestFile.java"); DecoratorSelection ds = new DecoratorSelection(); XmlFileSystemRepository rep = new XmlFileSystemRepository(); XmlToFormatContentConverter converter = new XmlToFormatContentConverter(rep); URI url = new File("resources/javaDefaultFormats.xml").toURI(); InputStream is = url.toURL().openStream(); converter.convert(is); File f = new File("resources/javaDefaultFormats.xml").getAbsoluteFile(); converter.convert(f); String string = new File("resources/query.xml").getAbsolutePath(); Document qDoc = XmlUtil.loadXmlFromFile(string); Query query = new Query(qDoc); Format format = XfsrFormatManager.getInstance().getFormats("java", "signature only"); TokenAutoTrimmer.create("Java", "resources/java.autotrim"); Document doc = rep.getXmlContentTree(ast, query, format, ds).getOwnerDocument(); String expected = "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\"?><sourcecode>main(String[])</sourcecode>"; ByteArrayOutputStream bout = new ByteArrayOutputStream(); XmlUtil.outputXml(doc, bout); String actual = bout.toString(); assertEquals(expected, actual); } | 886,013 |
0 | private void downloadFile(File file, String url) { String state = Environment.getExternalStorageState(); if (Environment.MEDIA_MOUNTED.equals(state)) { InputStream in = null; BufferedOutputStream out = null; try { in = new BufferedInputStream(new URL(url).openStream(), IO_BUFFER_SIZE); final FileOutputStream outStream = new FileOutputStream(file); out = new BufferedOutputStream(outStream, IO_BUFFER_SIZE); byte[] bytes = new byte[IO_BUFFER_SIZE]; while (in.read(bytes) > 0) { out.write(bytes); } } catch (IOException e) { e.printStackTrace(); } finally { if (in != null) { try { in.close(); } catch (IOException e) { e.printStackTrace(); } } if (out != null) { try { out.close(); } catch (IOException e) { e.printStackTrace(); } } } } } | public void importarHistoricoDeCotacoesDosPapeis(File[] pArquivosTXT, boolean pApagarDadosImportadosAnteriormente, Andamento pAndamento) throws FileNotFoundException, SQLException { if (pApagarDadosImportadosAnteriormente) { Statement stmtLimpezaInicialDestino = conDestino.createStatement(); String sql = "TRUNCATE TABLE TMP_TB_COTACAO_AVISTA_LOTE_PDR"; stmtLimpezaInicialDestino.executeUpdate(sql); sql = "TRUNCATE TABLE TMP_TB_COTACAO_OUTROS_MERCADOS"; stmtLimpezaInicialDestino.executeUpdate(sql); } final int TAMANHO_DO_REGISTRO = 245; long TAMANHO_DOS_METADADOS_DO_ARQUIVO = 2 * TAMANHO_DO_REGISTRO; long tamanhoDosArquivos = 0; for (File arquivoTXT : pArquivosTXT) { long tamanhoDoArquivo = arquivoTXT.length(); tamanhoDosArquivos += tamanhoDoArquivo; } int quantidadeEstimadaDeRegistros = (int) ((tamanhoDosArquivos - (pArquivosTXT.length * TAMANHO_DOS_METADADOS_DO_ARQUIVO)) / TAMANHO_DO_REGISTRO); String sqlMercadoAVistaLotePadrao = "INSERT INTO TMP_TB_COTACAO_AVISTA_LOTE_PDR(DATA_PREGAO, CODBDI, CODNEG, TPMERC, NOMRES, ESPECI, PRAZOT, MODREF, PREABE, PREMAX, PREMIN, PREMED, PREULT, PREOFC, PREOFV, TOTNEG, QUATOT, VOLTOT, PREEXE, INDOPC, DATVEN, FATCOT, PTOEXE, CODISI, DISMES) VALUES(:DATA_PREGAO, :CODBDI, :CODNEG, :TPMERC, :NOMRES, :ESPECI, :PRAZOT, :MODREF, :PREABE, :PREMAX, :PREMIN, :PREMED, :PREULT, :PREOFC, :PREOFV, :TOTNEG, :QUATOT, :VOLTOT, :PREEXE, :INDOPC, :DATVEN, :FATCOT, :PTOEXE, :CODISI, :DISMES)"; OraclePreparedStatement stmtDestinoMercadoAVistaLotePadrao = (OraclePreparedStatement) conDestino.prepareStatement(sqlMercadoAVistaLotePadrao); stmtDestinoMercadoAVistaLotePadrao.setExecuteBatch(COMANDOS_POR_LOTE); String sqlOutrosMercados = "INSERT INTO TMP_TB_COTACAO_OUTROS_MERCADOS(DATA_PREGAO, CODBDI, CODNEG, TPMERC, NOMRES, ESPECI, PRAZOT, MODREF, PREABE, PREMAX, PREMIN, PREMED, PREULT, PREOFC, PREOFV, TOTNEG, QUATOT, VOLTOT, PREEXE, INDOPC, DATVEN, FATCOT, PTOEXE, CODISI, DISMES) VALUES(:DATA_PREGAO, :CODBDI, :CODNEG, :TPMERC, :NOMRES, :ESPECI, :PRAZOT, :MODREF, :PREABE, :PREMAX, :PREMIN, :PREMED, :PREULT, :PREOFC, :PREOFV, :TOTNEG, :QUATOT, :VOLTOT, :PREEXE, :INDOPC, :DATVEN, :FATCOT, :PTOEXE, :CODISI, :DISMES)"; OraclePreparedStatement stmtDestinoOutrosMercados = (OraclePreparedStatement) conDestino.prepareStatement(sqlOutrosMercados); stmtDestinoOutrosMercados.setExecuteBatch(COMANDOS_POR_LOTE); int quantidadeDeRegistrosImportadosDosArquivos = 0; Scanner in = null; int numeroDoRegistro = -1; try { for (File arquivoTXT : pArquivosTXT) { int quantidadeDeRegistrosImportadosDoArquivoAtual = 0; int vDATA_PREGAO; try { in = new Scanner(new FileInputStream(arquivoTXT), Constantes.CONJUNTO_DE_CARACTERES_DOS_ARQUIVOS_TEXTO_DA_BOVESPA.name()); String registro; numeroDoRegistro = 0; while (in.hasNextLine()) { ++numeroDoRegistro; registro = in.nextLine(); if (registro.length() != TAMANHO_DO_REGISTRO) throw new ProblemaNaImportacaoDeArquivo(); if (registro.startsWith("01")) { stmtDestinoMercadoAVistaLotePadrao.clearParameters(); stmtDestinoOutrosMercados.clearParameters(); vDATA_PREGAO = Integer.parseInt(registro.substring(2, 10).trim()); int vCODBDI = Integer.parseInt(registro.substring(10, 12).trim()); String vCODNEG = registro.substring(12, 24).trim(); int vTPMERC = Integer.parseInt(registro.substring(24, 27).trim()); String vNOMRES = registro.substring(27, 39).trim(); String vESPECI = registro.substring(39, 49).trim(); String vPRAZOT = registro.substring(49, 52).trim(); String vMODREF = registro.substring(52, 56).trim(); BigDecimal vPREABE = obterBigDecimal(registro.substring(56, 69).trim(), 13, 2); BigDecimal vPREMAX = obterBigDecimal(registro.substring(69, 82).trim(), 13, 2); BigDecimal vPREMIN = obterBigDecimal(registro.substring(82, 95).trim(), 13, 2); BigDecimal vPREMED = obterBigDecimal(registro.substring(95, 108).trim(), 13, 2); BigDecimal vPREULT = obterBigDecimal(registro.substring(108, 121).trim(), 13, 2); BigDecimal vPREOFC = obterBigDecimal(registro.substring(121, 134).trim(), 13, 2); BigDecimal vPREOFV = obterBigDecimal(registro.substring(134, 147).trim(), 13, 2); int vTOTNEG = Integer.parseInt(registro.substring(147, 152).trim()); BigDecimal vQUATOT = new BigDecimal(registro.substring(152, 170).trim()); BigDecimal vVOLTOT = obterBigDecimal(registro.substring(170, 188).trim(), 18, 2); BigDecimal vPREEXE = obterBigDecimal(registro.substring(188, 201).trim(), 13, 2); int vINDOPC = Integer.parseInt(registro.substring(201, 202).trim()); int vDATVEN = Integer.parseInt(registro.substring(202, 210).trim()); int vFATCOT = Integer.parseInt(registro.substring(210, 217).trim()); BigDecimal vPTOEXE = obterBigDecimal(registro.substring(217, 230).trim(), 13, 6); String vCODISI = registro.substring(230, 242).trim(); int vDISMES = Integer.parseInt(registro.substring(242, 245).trim()); boolean mercadoAVistaLotePadrao = (vTPMERC == 10 && vCODBDI == 2); OraclePreparedStatement stmtDestino; if (mercadoAVistaLotePadrao) { stmtDestino = stmtDestinoMercadoAVistaLotePadrao; } else { stmtDestino = stmtDestinoOutrosMercados; } stmtDestino.setIntAtName("DATA_PREGAO", vDATA_PREGAO); stmtDestino.setIntAtName("CODBDI", vCODBDI); stmtDestino.setStringAtName("CODNEG", vCODNEG); stmtDestino.setIntAtName("TPMERC", vTPMERC); stmtDestino.setStringAtName("NOMRES", vNOMRES); stmtDestino.setStringAtName("ESPECI", vESPECI); stmtDestino.setStringAtName("PRAZOT", vPRAZOT); stmtDestino.setStringAtName("MODREF", vMODREF); stmtDestino.setBigDecimalAtName("PREABE", vPREABE); stmtDestino.setBigDecimalAtName("PREMAX", vPREMAX); stmtDestino.setBigDecimalAtName("PREMIN", vPREMIN); stmtDestino.setBigDecimalAtName("PREMED", vPREMED); stmtDestino.setBigDecimalAtName("PREULT", vPREULT); stmtDestino.setBigDecimalAtName("PREOFC", vPREOFC); stmtDestino.setBigDecimalAtName("PREOFV", vPREOFV); stmtDestino.setIntAtName("TOTNEG", vTOTNEG); stmtDestino.setBigDecimalAtName("QUATOT", vQUATOT); stmtDestino.setBigDecimalAtName("VOLTOT", vVOLTOT); stmtDestino.setBigDecimalAtName("PREEXE", vPREEXE); stmtDestino.setIntAtName("INDOPC", vINDOPC); stmtDestino.setIntAtName("DATVEN", vDATVEN); stmtDestino.setIntAtName("FATCOT", vFATCOT); stmtDestino.setBigDecimalAtName("PTOEXE", vPTOEXE); stmtDestino.setStringAtName("CODISI", vCODISI); stmtDestino.setIntAtName("DISMES", vDISMES); int contagemDasInsercoes = stmtDestino.executeUpdate(); quantidadeDeRegistrosImportadosDoArquivoAtual++; quantidadeDeRegistrosImportadosDosArquivos++; } else if (registro.startsWith("99")) { BigDecimal totalDeRegistros = obterBigDecimal(registro.substring(31, 42).trim(), 11, 0); assert (totalDeRegistros.intValue() - 2) == quantidadeDeRegistrosImportadosDoArquivoAtual : "Quantidade de registros divergente"; break; } double percentualCompleto = (double) quantidadeDeRegistrosImportadosDosArquivos / quantidadeEstimadaDeRegistros * 100; pAndamento.setPercentualCompleto((int) percentualCompleto); } conDestino.commit(); } catch (Exception ex) { conDestino.rollback(); ProblemaNaImportacaoDeArquivo problemaDetalhado = new ProblemaNaImportacaoDeArquivo(); problemaDetalhado.nomeDoArquivo = arquivoTXT.getName(); problemaDetalhado.linhaProblematicaDoArquivo = numeroDoRegistro; problemaDetalhado.detalhesSobreOProblema = ex; throw problemaDetalhado; } finally { in.close(); } } } finally { pAndamento.setPercentualCompleto(100); stmtDestinoMercadoAVistaLotePadrao.close(); stmtDestinoOutrosMercados.close(); } } | 886,014 |
1 | @Override protected IStatus runCancelableRunnable(IProgressMonitor monitor) { IStatus returnValue = Status.OK_STATUS; monitor.beginTask(NLS.bind(Messages.SaveFileOnDiskHandler_SavingFiles, open), informationUnitsFromExecutionEvent.size()); for (InformationUnit informationUnit : informationUnitsFromExecutionEvent) { if (!monitor.isCanceled()) { monitor.setTaskName(NLS.bind(Messages.SaveFileOnDiskHandler_Saving, informationUnit.getLabel())); InformationStructureRead read = InformationStructureRead.newSession(informationUnit); read.getValueByNodeId(Activator.FILENAME); IFile binaryReferenceFile = InformationUtil.getBinaryReferenceFile(informationUnit); FileWriter writer = null; try { if (binaryReferenceFile != null) { File file = new File(open, (String) read.getValueByNodeId(Activator.FILENAME)); InputStream contents = binaryReferenceFile.getContents(); writer = new FileWriter(file); IOUtils.copy(contents, writer); monitor.worked(1); } } catch (Exception e) { returnValue = StatusCreator.newStatus(NLS.bind(Messages.SaveFileOnDiskHandler_ErrorSaving, informationUnit.getLabel(), e)); break; } finally { if (writer != null) { try { writer.flush(); writer.close(); } catch (IOException e) { } } } } } return returnValue; } | public void deployDir(File srcDir, String destDir) { File[] dirFiles = srcDir.listFiles(); for (int k = 0; dirFiles != null && k < dirFiles.length; k++) { if (!dirFiles[k].getName().startsWith(".")) { if (dirFiles[k].isFile()) { File deployFile = new File(destDir + File.separator + dirFiles[k].getName()); if (dirFiles[k].lastModified() != deployFile.lastModified() || dirFiles[k].length() != deployFile.length()) { IOUtils.copy(dirFiles[k], deployFile); } } else if (dirFiles[k].isDirectory()) { String newDestDir = destDir + File.separator + dirFiles[k].getName(); deployDir(dirFiles[k], newDestDir); } } } } | 886,015 |
1 | public SequenceIterator call(SequenceIterator[] arguments, XPathContext context) throws XPathException { try { String encodedString = ((StringValue) arguments[0].next()).getStringValue(); byte[] decodedBytes = Base64.decode(encodedString); if (arguments.length > 1 && ((BooleanValue) arguments[1].next()).getBooleanValue()) { ByteArrayInputStream bis = new ByteArrayInputStream(decodedBytes); GZIPInputStream zis = new GZIPInputStream(bis); ByteArrayOutputStream baos = new ByteArrayOutputStream(); IOUtils.copy(zis, baos); decodedBytes = baos.toByteArray(); } Document doc = XmlUtils.stringToDocument(new String(decodedBytes, "UTF-8")); Source source = new DOMSource(doc.getDocumentElement()); XPathEvaluator evaluator = new XPathEvaluator(context.getConfiguration()); NodeInfo[] infos = new NodeInfo[] { evaluator.setSource(source) }; return new ArrayIterator(infos); } catch (Exception e) { throw new XPathException("Could not base64 decode string", e); } } | private void copyFile(File source, File dest) throws IOException { FileChannel sourceChannel = new FileInputStream(source).getChannel(); FileChannel destinationChannel = new FileOutputStream(dest).getChannel(); sourceChannel.transferTo(0, sourceChannel.size(), destinationChannel); sourceChannel.close(); destinationChannel.close(); } | 886,016 |
0 | public TextureData newTextureData(GLProfile glp, URL url, int internalFormat, int pixelFormat, boolean mipmap, String fileSuffix) throws IOException { InputStream stream = new BufferedInputStream(url.openStream()); try { return newTextureData(glp, stream, internalFormat, pixelFormat, mipmap, fileSuffix); } finally { stream.close(); } } | private String digestMd5(final String password) { String base64; try { MessageDigest digest = MessageDigest.getInstance("MD5"); digest.update(password.getBytes()); base64 = fr.cnes.sitools.util.Base64.encodeBytes(digest.digest()); } catch (NoSuchAlgorithmException e) { throw new RuntimeException(e); } return "{MD5}" + base64; } | 886,017 |
1 | private static String getDigest(String srcStr, String alg) { Assert.notNull(srcStr); Assert.notNull(alg); try { MessageDigest alga = MessageDigest.getInstance(alg); alga.update(srcStr.getBytes()); byte[] digesta = alga.digest(); return byte2hex(digesta); } catch (Exception e) { throw new RuntimeException(e); } } | public String generateFilename() { MessageDigest md; byte[] sha1hash = new byte[40]; Random r = new Random(); String fileName = ""; String token = ""; while (true) { token = Long.toString(Math.abs(r.nextLong()), 36) + Long.toString(System.currentTimeMillis()); try { md = MessageDigest.getInstance("SHA-1"); md.update(token.getBytes("iso-8859-1"), 0, token.length()); sha1hash = md.digest(); } catch (Exception e) { log.log(Level.WARNING, e.getMessage(), e); } fileName = convertToHex(sha1hash); if (!new File(Configuration.ImageUploadPath + fileName).exists()) { break; } } return fileName; } | 886,018 |
1 | public void elimina(Cliente cli) throws errorSQL, errorConexionBD { System.out.println("GestorCliente.elimina()"); int id = cli.getId(); String sql; Statement stmt = null; try { gd.begin(); sql = "DELETE FROM cliente WHERE cod_cliente =" + id; System.out.println("Ejecutando: " + sql); stmt = gd.getConexion().createStatement(); stmt.executeUpdate(sql); System.out.println("executeUpdate"); sql = "DELETE FROM persona WHERE id =" + id; System.out.println("Ejecutando: " + sql); stmt.executeUpdate(sql); gd.commit(); System.out.println("commit"); stmt.close(); } catch (SQLException e) { gd.rollback(); throw new errorSQL(e.toString()); } catch (errorConexionBD e) { System.err.println("Error en GestorCliente.elimina(): " + e); } catch (errorSQL e) { System.err.println("Error en GestorCliente.elimina(): " + e); } } | public void moveMessage(DBMimeMessage oSrcMsg) throws MessagingException { if (DebugFile.trace) { DebugFile.writeln("Begin DBFolder.moveMessage()"); DebugFile.incIdent(); } JDCConnection oConn = null; PreparedStatement oStmt = null; ResultSet oRSet = null; BigDecimal oPg = null; BigDecimal oPos = null; int iLen = 0; try { oConn = ((DBStore) getStore()).getConnection(); oStmt = oConn.prepareStatement("SELECT " + DB.pg_message + "," + DB.nu_position + "," + DB.len_mimemsg + " FROM " + DB.k_mime_msgs + " WHERE " + DB.gu_mimemsg + "=?"); oStmt.setString(1, oSrcMsg.getMessageGuid()); oRSet = oStmt.executeQuery(); if (oRSet.next()) { oPg = oRSet.getBigDecimal(1); oPos = oRSet.getBigDecimal(2); iLen = oRSet.getInt(3); } oRSet.close(); oRSet = null; oStmt.close(); oStmt = null; oConn.setAutoCommit(false); oStmt = oConn.prepareStatement("UPDATE " + DB.k_categories + " SET " + DB.len_size + "=" + DB.len_size + "-" + String.valueOf(iLen) + " WHERE " + DB.gu_category + "=?"); oStmt.setString(1, ((DBFolder) (oSrcMsg.getFolder())).getCategory().getString(DB.gu_category)); oStmt.executeUpdate(); oStmt.close(); oStmt = null; oStmt = oConn.prepareStatement("UPDATE " + DB.k_categories + " SET " + DB.len_size + "=" + DB.len_size + "+" + String.valueOf(iLen) + " WHERE " + DB.gu_category + "=?"); oStmt.setString(1, getCategory().getString(DB.gu_category)); oStmt.executeUpdate(); oStmt.close(); oStmt = null; oConn.commit(); } catch (SQLException sqle) { if (null != oRSet) { try { oRSet.close(); } catch (Exception ignore) { } } if (null != oStmt) { try { oStmt.close(); } catch (Exception ignore) { } } if (null != oConn) { try { oConn.rollback(); } catch (Exception ignore) { } } throw new MessagingException(sqle.getMessage(), sqle); } if (null == oPg) throw new MessagingException("Source message not found"); if (null == oPos) throw new MessagingException("Source message position is not valid"); DBFolder oSrcFldr = (DBFolder) oSrcMsg.getFolder(); MboxFile oMboxSrc = null, oMboxThis = null; try { oMboxSrc = new MboxFile(oSrcFldr.getFile(), MboxFile.READ_WRITE); oMboxThis = new MboxFile(oSrcFldr.getFile(), MboxFile.READ_WRITE); oMboxThis.appendMessage(oMboxSrc, oPos.longValue(), iLen); oMboxThis.close(); oMboxThis = null; oMboxSrc.purge(new int[] { oPg.intValue() }); oMboxSrc.close(); oMboxSrc = null; } catch (Exception e) { if (oMboxThis != null) { try { oMboxThis.close(); } catch (Exception ignore) { } } if (oMboxSrc != null) { try { oMboxSrc.close(); } catch (Exception ignore) { } } throw new MessagingException(e.getMessage(), e); } try { oConn = ((DBStore) getStore()).getConnection(); BigDecimal dNext = getNextMessage(); String sCatGuid = getCategory().getString(DB.gu_category); oStmt = oConn.prepareStatement("UPDATE " + DB.k_mime_msgs + " SET " + DB.gu_category + "=?," + DB.pg_message + "=? WHERE " + DB.gu_mimemsg + "=?"); oStmt.setString(1, sCatGuid); oStmt.setBigDecimal(2, dNext); oStmt.setString(3, oSrcMsg.getMessageGuid()); oStmt.executeUpdate(); oStmt.close(); oStmt = null; oConn.commit(); } catch (SQLException sqle) { if (null != oStmt) { try { oStmt.close(); } catch (Exception ignore) { } } if (null != oConn) { try { oConn.rollback(); } catch (Exception ignore) { } } throw new MessagingException(sqle.getMessage(), sqle); } if (DebugFile.trace) { DebugFile.decIdent(); DebugFile.writeln("End DBFolder.moveMessage()"); } } | 886,019 |
1 | public static String encrypt(String algorithm, String[] input) { try { MessageDigest md = MessageDigest.getInstance(algorithm); md.reset(); for (int i = 0; i < input.length; i++) { if (input[i] != null) md.update(input[i].getBytes("UTF-8")); } byte[] messageDigest = md.digest(); StringBuffer hexString = new StringBuffer(); for (int i = 0; i < messageDigest.length; i++) { hexString.append(Integer.toHexString((0xf0 & messageDigest[i]) >> 4)); hexString.append(Integer.toHexString(0x0f & messageDigest[i])); } return hexString.toString(); } catch (NoSuchAlgorithmException e) { throw new RuntimeException(e); } catch (UnsupportedEncodingException e) { throw new RuntimeException(e); } catch (NullPointerException e) { return new StringBuffer().toString(); } } | private String getMD5Password(String plainText) throws NoSuchAlgorithmException { MessageDigest mdAlgorithm; StringBuffer hexString = new StringBuffer(); String md5Password = ""; mdAlgorithm = MessageDigest.getInstance("MD5"); mdAlgorithm.update(plainText.getBytes()); byte[] digest = mdAlgorithm.digest(); for (int i = 0; i < digest.length; i++) { plainText = Integer.toHexString(0xFF & digest[i]); if (plainText.length() < 2) { plainText = "0" + plainText; } hexString.append(plainText); } md5Password = hexString.toString(); return md5Password; } | 886,020 |
0 | public boolean delete(int id) { boolean deletionOk = false; Connection conn = null; try { conn = db.getConnection(); conn.setAutoCommit(false); String sql = "DELETE FROM keyphrases WHERE website_id=?"; PreparedStatement ps = conn.prepareStatement(sql); ps.setInt(1, id); deletionOk = ps.executeUpdate() == 1; ps.close(); sql = "DELETE FROM websites WHERE id=?"; ps = conn.prepareStatement(sql); ps.setInt(1, id); boolean success = ps.executeUpdate() == 1; deletionOk = deletionOk && success; ps.close(); conn.commit(); conn.setAutoCommit(true); } catch (SQLException sqle) { try { conn.rollback(); conn.setAutoCommit(true); } catch (SQLException sex) { throw new OsseoFailure("SQL error: roll back failed. ", sex); } throw new OsseoFailure("SQL error: cannot remove website with id " + id + ".", sqle); } finally { db.putConnection(conn); } return deletionOk; } | public static ArrayList<FriendInfo> downloadFriendsList(String username) { try { URL url; url = new URL(WS_URL + "/user/" + URLEncoder.encode(username, "UTF-8") + "/friends.xml"); HttpURLConnection conn = (HttpURLConnection) url.openConnection(); conn.connect(); InputStream is = conn.getInputStream(); DocumentBuilderFactory dbFac = DocumentBuilderFactory.newInstance(); DocumentBuilder db = dbFac.newDocumentBuilder(); Document doc = db.parse(is); NodeList friends = doc.getElementsByTagName("user"); ArrayList<FriendInfo> result = new ArrayList<FriendInfo>(); for (int i = 0; i < friends.getLength(); i++) try { result.add(new FriendInfo((Element) friends.item(i))); } catch (Utils.ParseException e) { Log.e(TAG, "in downloadFriendsList", e); return null; } return result; } catch (Exception e) { Log.e(TAG, "in downloadFriendsList", e); return null; } } | 886,021 |
0 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public void load() throws IOException { File file = new File(filename); URL url = file.toURI().toURL(); Properties temp = new Properties(); temp.load(url.openStream()); if (temp.getProperty("Width") != null) try { width = Integer.valueOf(temp.getProperty("Width")); } catch (Exception e) { System.out.println("Error loading Calibration Sheet Width - leaving as default: " + e); } if (temp.getProperty("Height") != null) try { height = Integer.valueOf(temp.getProperty("Height")); } catch (Exception e) { System.out.println("Error loading Calibration Sheet Height - leaving as default: " + e); } if (temp.getProperty("CircleRadius") != null) try { circleradius = Double.valueOf(temp.getProperty("CircleRadius")); } catch (Exception e) { System.out.println("Error loading Calibration Sheet Circle Radius - leaving as default: " + e); } ArrayList<Ellipse> calibrationcircleslist = new ArrayList<Ellipse>(); int i = 0; while ((temp.getProperty("Circle" + i + "CenterX") != null) && (temp.getProperty("Circle" + i + "CenterY") != null)) { Point2d circlecenter = new Point2d(0, 0); circlecenter.x = Double.valueOf(temp.getProperty("Circle" + i + "CenterX")); circlecenter.y = Double.valueOf(temp.getProperty("Circle" + i + "CenterY")); Ellipse element = new Ellipse(circlecenter, circleradius, circleradius, 0); calibrationcircleslist.add(element); i++; } calibrationcircles = new Ellipse[0]; calibrationcircles = calibrationcircleslist.toArray(calibrationcircles); } | 886,022 |
1 | public SWORDEntry ingestDepost(final DepositCollection pDeposit, final ServiceDocument pServiceDocument) throws SWORDException { try { ZipFileAccess tZipFile = new ZipFileAccess(super.getTempDir()); LOG.debug("copying file"); String tZipTempFileName = super.getTempDir() + "uploaded-file.tmp"; IOUtils.copy(pDeposit.getFile(), new FileOutputStream(tZipTempFileName)); Datastream tDatastream = new LocalDatastream(super.getGenericFileName(pDeposit), this.getContentType(), tZipTempFileName); _datastreamList.add(tDatastream); _datastreamList.addAll(tZipFile.getFiles(tZipTempFileName)); int i = 0; boolean found = false; for (i = 0; i < _datastreamList.size(); i++) { if (_datastreamList.get(i).getId().equalsIgnoreCase("mets")) { found = true; break; } } if (found) { SAXBuilder tBuilder = new SAXBuilder(); _mets = new METSObject(tBuilder.build(((LocalDatastream) _datastreamList.get(i)).getPath())); LocalDatastream tLocalMETSDS = (LocalDatastream) _datastreamList.remove(i); new File(tLocalMETSDS.getPath()).delete(); _datastreamList.add(_mets.getMETSDs()); _datastreamList.addAll(_mets.getMetadataDatastreams()); } else { throw new SWORDException("Couldn't find a METS document in the zip file, ensure it is named mets.xml or METS.xml"); } SWORDEntry tEntry = super.ingestDepost(pDeposit, pServiceDocument); tZipFile.removeLocalFiles(); return tEntry; } catch (IOException tIOExcpt) { String tMessage = "Couldn't retrieve METS from deposit: " + tIOExcpt.toString(); LOG.error(tMessage); tIOExcpt.printStackTrace(); throw new SWORDException(tMessage, tIOExcpt); } catch (JDOMException tJDOMExcpt) { String tMessage = "Couldn't build METS from deposit: " + tJDOMExcpt.toString(); LOG.error(tMessage); tJDOMExcpt.printStackTrace(); throw new SWORDException(tMessage, tJDOMExcpt); } } | public void command() { JFileChooser chooser = new JFileChooser(); chooser.setCurrentDirectory(new File(dir)); int returnVal = chooser.showOpenDialog(null); if (returnVal == JFileChooser.APPROVE_OPTION) { filename = chooser.getSelectedFile().getAbsolutePath(); String f2 = ""; for (int i = 0; i < filename.length(); ++i) { if (filename.charAt(i) != '\\') { f2 = f2 + filename.charAt(i); } else f2 = f2 + '/'; } filename = f2; if (filename.contains(dir)) { filename = filename.substring(dir.length()); } else { try { FileChannel srcFile = new FileInputStream(filename).getChannel(); FileChannel dstFile; filename = "ueditor_files/" + chooser.getSelectedFile().getName(); File newFile; if (!(newFile = new File(dir + filename)).createNewFile()) { dstFile = new FileInputStream(dir + filename).getChannel(); newFile = null; } else { dstFile = new FileOutputStream(newFile).getChannel(); } dstFile.transferFrom(srcFile, 0, srcFile.size()); srcFile.close(); dstFile.close(); System.out.println("file copyed to: " + dir + filename); } catch (Exception e) { e.printStackTrace(); label.setIcon(InputText.iconX); filename = null; for (Group g : groups) { g.updateValidity(true); } return; } } label.setIcon(InputText.iconV); for (Group g : groups) { g.updateValidity(true); } } } | 886,023 |
0 | @SuppressWarnings("static-access") public void run() { while (true) { try { thisThread.sleep(10000); } catch (InterruptedException e) { System.out.print("no connection"); } ++i; umat.flush(); umat = null; try { base = getDocumentBase(); username = getParameter("username"); } catch (Exception e) { } String userdat = "data/" + username + "_l.cod"; URL url = null; try { url = new URL(base, userdat); } catch (MalformedURLException e1) { } InputStream in = null; try { in = url.openStream(); } catch (IOException e1) { } BufferedReader reader = null; try { reader = new BufferedReader(new InputStreamReader(in)); } catch (Exception r) { } try { String line = reader.readLine(); StringTokenizer tokenizer = new StringTokenizer(line, " "); int dim = Integer.parseInt(tokenizer.nextToken().trim().toLowerCase()); this.topol = tokenizer.nextToken().trim().toLowerCase(); xunit = Integer.parseInt(tokenizer.nextToken().trim().toLowerCase()); yunit = Integer.parseInt(tokenizer.nextToken().trim().toLowerCase()); @SuppressWarnings("unused") String neigh = tokenizer.nextToken().trim().toLowerCase(); String label = null; labels = new String[xunit][yunit]; for (int e = 0; e < yunit; e++) { for (int r = 0; r < xunit; r++) { line = reader.readLine(); StringTokenizer tokenizer2 = new StringTokenizer(line, " "); for (int w = 0; w < dim; w++) { if (tokenizer2.countTokens() > 0) tokenizer2.nextToken(); } while (tokenizer2.countTokens() > 0) { label = tokenizer2.nextToken() + " "; } if (label == null) { labels[r][e] = "none"; } else { labels[r][e] = label; } label = null; } } reader.close(); if (topol.equals("hexa")) { xposit = new int[xunit][yunit]; yposit = new int[xunit][yunit]; double divisor1 = xunit; double divisor2 = yunit; for (int p = 0; p < xunit; p++) { for (int q = 0; q < yunit; q++) { if (q % 2 == 0) { double nenner = (p * width); xposit[p][q] = (int) Math.round(nenner / divisor1); } if (q % 2 != 0) { double nenner = (width * 0.5) + (p * width); xposit[p][q] = (int) Math.round(nenner / divisor1); } yposit[p][q] = (int) Math.round(((height * 0.5) + q * height) / divisor2); } } } if (topol.equals("rect")) { xposit = new int[xunit][yunit]; yposit = new int[xunit][yunit]; double divisor1 = xunit; double divisor2 = yunit; for (int p = 0; p < xunit; p++) { for (int q = 0; q < yunit; q++) { double nenner = (width * 0.5) + (p * width); xposit[p][q] = (int) Math.round((nenner / divisor1)); yposit[p][q] = (int) Math.round(((height * 0.5) + q * height) / divisor2); } } } } catch (IOException o) { } String userpng = "images/" + username + ".png"; mt.removeImage(umat); umat = getImage(base, userpng); mt.addImage(umat, 0); try { mt.waitForID(0); } catch (InterruptedException i) { showStatus("Interrupted"); } repaint(); } } | public static void main(String[] args) { try { URL url = new URL("http://localhost:6557"); HttpURLConnection conn = (HttpURLConnection) url.openConnection(); conn.setRequestMethod("HEAD"); int responseCode = conn.getResponseCode(); BufferedReader in = new BufferedReader(new InputStreamReader(conn.getInputStream())); String decodedString; while ((decodedString = in.readLine()) != null) { System.out.println(decodedString); } in.close(); conn.disconnect(); } catch (Exception ex) { Logger.getLogger(TestSSLConnection.class.getName()).log(Level.SEVERE, null, ex); } } | 886,024 |
0 | public static void copyFile(File sourceFile, File destFile) throws IOException { if (!destFile.exists()) { destFile.createNewFile(); } FileChannel source = null; FileChannel destination = null; try { source = new FileInputStream(sourceFile).getChannel(); destination = new FileOutputStream(destFile).getChannel(); long count = 0; long size = source.size(); while ((count += destination.transferFrom(source, 0, size - count)) < size) ; } finally { if (source != null) { source.close(); } if (destination != null) { destination.close(); } } } | protected Object doExecute() throws Exception { if (args.size() == 1 && "-".equals(args.get(0))) { log.info("Printing STDIN"); cat(new BufferedReader(io.in), io); } else { for (String filename : args) { BufferedReader reader; try { URL url = new URL(filename); log.info("Printing URL: " + url); reader = new BufferedReader(new InputStreamReader(url.openStream())); } catch (MalformedURLException ignore) { File file = new File(filename); log.info("Printing file: " + file); reader = new BufferedReader(new FileReader(file)); } try { cat(reader, io); } finally { IOUtil.close(reader); } } } return SUCCESS; } | 886,025 |
1 | private void trainSRLParser(byte flag, JarArchiveOutputStream zout) throws Exception { AbstractSRLParser labeler = null; AbstractDecoder[] decoder = null; if (flag == SRLParser.FLAG_TRAIN_LEXICON) { System.out.println("\n* Save lexica"); labeler = new SRLParser(flag, s_featureXml); } else if (flag == SRLParser.FLAG_TRAIN_INSTANCE) { System.out.println("\n* Print training instances"); System.out.println("- loading lexica"); labeler = new SRLParser(flag, t_xml, s_lexiconFiles); } else if (flag == SRLParser.FLAG_TRAIN_BOOST) { System.out.println("\n* Train boost"); decoder = new AbstractDecoder[m_model.length]; for (int i = 0; i < decoder.length; i++) decoder[i] = new OneVsAllDecoder((OneVsAllModel) m_model[i]); labeler = new SRLParser(flag, t_xml, t_map, decoder); } AbstractReader<DepNode, DepTree> reader = new SRLReader(s_trainFile, true); DepTree tree; int n; labeler.setLanguage(s_language); reader.setLanguage(s_language); for (n = 0; (tree = reader.nextTree()) != null; n++) { labeler.parse(tree); if (n % 1000 == 0) System.out.printf("\r- parsing: %dK", n / 1000); } System.out.println("\r- labeling: " + n); if (flag == SRLParser.FLAG_TRAIN_LEXICON) { System.out.println("- labeling"); labeler.saveTags(s_lexiconFiles); t_xml = labeler.getSRLFtrXml(); } else if (flag == SRLParser.FLAG_TRAIN_INSTANCE || flag == SRLParser.FLAG_TRAIN_BOOST) { a_yx = labeler.a_trans; zout.putArchiveEntry(new JarArchiveEntry(ENTRY_FEATURE)); IOUtils.copy(new FileInputStream(s_featureXml), zout); zout.closeArchiveEntry(); for (String lexicaFile : s_lexiconFiles) { zout.putArchiveEntry(new JarArchiveEntry(lexicaFile)); IOUtils.copy(new FileInputStream(lexicaFile), zout); zout.closeArchiveEntry(); } if (flag == SRLParser.FLAG_TRAIN_INSTANCE) t_map = labeler.getSRLFtrMap(); } } | public static void downloadFile(HttpServletResponse response, String file) throws IOException { response.setContentType(FileUtils.getContentType(file)); response.setContentLength(FileUtils.getContentLength(file)); response.setHeader("Content-type", ResponseUtils.DOWNLOAD_CONTENT_TYPE); response.setHeader("Content-Disposition", "attachment; filename=\"" + FileUtils.getFileName(file) + "\""); response.setHeader("Content-Length", Integer.toString(FileUtils.getContentLength(file))); InputStream input = new FileInputStream(file); OutputStream output = response.getOutputStream(); IOUtils.copy(input, output, true); } | 886,026 |
0 | public static void copy(String fromFileName, String toFileName) throws IOException { File fromFile = new File(fromFileName); File toFile = new File(toFileName); if (!fromFile.exists()) throw new IOException("FileCopy: " + "no such source file: " + fromFileName); if (!fromFile.isFile()) throw new IOException("FileCopy: " + "can't copy directory: " + fromFileName); if (!fromFile.canRead()) throw new IOException("FileCopy: " + "source file is unreadable: " + fromFileName); if (toFile.isDirectory()) toFile = new File(toFile, fromFile.getName()); if (toFile.exists()) { if (!toFile.canWrite()) throw new IOException("FileCopy: " + "destination file is unwriteable: " + toFileName); } else { String parent = toFile.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) dir.mkdir(); if (dir.isFile()) throw new IOException("FileCopy: " + "destination is not a directory: " + parent); if (!dir.canWrite()) throw new IOException("FileCopy: " + "destination directory is unwriteable: " + parent); } FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(fromFile); to = new FileOutputStream(toFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead); } finally { if (from != null) try { from.close(); } catch (IOException e) { ; } if (to != null) try { to.close(); } catch (IOException e) { ; } } } | private HttpURLConnection getConnection(String url, int connTimeout, int readTimeout) throws IOException { HttpURLConnection con = null; con = (HttpURLConnection) new URL(url).openConnection(); if (connTimeout > 0) { if (!isJDK14orEarlier) { con.setConnectTimeout(connTimeout * 1000); } else { System.setProperty("sun.net.client.defaultConnectTimeout", String.valueOf(connTimeout * 1000)); } } if (readTimeout > 0) { if (!isJDK14orEarlier) { con.setReadTimeout(readTimeout * 1000); } else { System.setProperty("sun.net.client.defaultReadTimeout", String.valueOf(readTimeout * 1000)); } } con.setInstanceFollowRedirects(false); return con; } | 886,027 |
0 | public static void insertTableData(Connection dest, TableMetaData tableMetaData) throws Exception { PreparedStatement ps = null; try { dest.setAutoCommit(false); String sql = "INSERT INTO " + tableMetaData.getSchema() + "." + tableMetaData.getTableName() + " ("; for (String columnName : tableMetaData.getColumnsNames()) { sql += columnName + ","; } sql = sql.substring(0, sql.length() - 1); sql += ") VALUES ("; for (String columnName : tableMetaData.getColumnsNames()) { sql += "?" + ","; } sql = sql.substring(0, sql.length() - 1); sql += ")"; IOHelper.writeInfo(sql); ps = dest.prepareStatement(sql); for (Row r : tableMetaData.getData()) { try { int param = 1; for (String columnName : tableMetaData.getColumnsNames()) { if (dest instanceof OracleConnection) { if (tableMetaData.getColumnsTypes().get(columnName).equalsIgnoreCase("BLOB")) { BLOB blob = new BLOB((OracleConnection) dest, (byte[]) r.getRowData().get(columnName)); ((OraclePreparedStatement) ps).setBLOB(param, blob); } else if (tableMetaData.getColumnsTypes().get(columnName).equalsIgnoreCase("CLOB")) { ((OraclePreparedStatement) ps).setStringForClob(param, (String) r.getRowData().get(columnName)); } else if (tableMetaData.getColumnsTypes().get(columnName).equalsIgnoreCase("LONG")) { ps.setBytes(param, (byte[]) r.getRowData().get(columnName)); } } else { IOHelper.writeInfo(columnName + " = " + r.getRowData().get(columnName)); ps.setObject(param, r.getRowData().get(columnName)); } param++; } if (ps.executeUpdate() != 1) { dest.rollback(); updateTableData(dest, tableMetaData, r); } } catch (Exception ex) { try { dest.rollback(); updateTableData(dest, tableMetaData, r); } catch (Exception ex2) { IOHelper.writeError("Error in update " + sql, ex2); } } ps.clearParameters(); } dest.commit(); dest.setAutoCommit(true); } finally { if (ps != null) ps.close(); } } | public static void main(String[] args) { if (args.length == 0) { System.out.println("Usage: java xyzImpl inputfile"); System.exit(0); } XYZ xyz = null; try { URL url = new URL(Util.makeAbsoluteURL(args[0])); BufferedReader bReader = new BufferedReader(new InputStreamReader(url.openStream())); int idx = args[0].indexOf("."); String id = (idx == -1) ? args[0] : args[0].substring(0, idx); idx = id.lastIndexOf("\\"); if (idx != -1) id = id.substring(idx + 1); xyz = new XYZImpl(bReader, id); CMLMolecule mol = xyz.getMolecule(); StringWriter sw = new StringWriter(); mol.debug(sw); System.out.println(sw.toString()); SpanningTree sTree = new SpanningTreeImpl(mol); System.out.println(sTree.toSMILES()); Writer w = new OutputStreamWriter(new FileOutputStream(id + ".xml")); PMRDelegate.outputEventStream(mol, w, PMRNode.PRETTY, 0); w.close(); w = new OutputStreamWriter(new FileOutputStream(id + "-new.mol")); xyz.setOutputCMLMolecule(mol); xyz.output(w); w.close(); } catch (Exception e) { System.out.println("xyz failed: " + e); e.printStackTrace(); System.exit(0); } } | 886,028 |
1 | public static byte[] readResource(Class owningClass, String resourceName) { final URL url = getResourceUrl(owningClass, resourceName); if (null == url) { throw new MissingResourceException(owningClass.toString() + " key '" + resourceName + "'", owningClass.toString(), resourceName); } LOG.info("Loading resource '" + url.toExternalForm() + "' " + "from " + owningClass); final InputStream inputStream; try { inputStream = url.openStream(); } catch (IOException e) { throw new RuntimeException("Should not happpen", e); } final ByteArrayOutputStream outputStream = new ByteArrayOutputStream(); try { IOUtils.copy(inputStream, outputStream); } catch (IOException e) { throw new RuntimeException("Should not happpen", e); } return outputStream.toByteArray(); } | public static byte[] decrypt(byte[] ciphertext, byte[] key) throws IOException { CryptInputStream in = new CryptInputStream(new ByteArrayInputStream(ciphertext), new SerpentEngine(), key); ByteArrayOutputStream bout = new ByteArrayOutputStream(); IOUtils.copy(in, bout); return bout.toByteArray(); } | 886,029 |
0 | private static InputStream stream(String input) { try { if (input.startsWith("http://")) return URIFactory.url(input).openStream(); else return stream(new File(input)); } catch (IOException e) { throw new RuntimeException(e); } catch (URISyntaxException e) { throw new RuntimeException(e); } } | public static String stringOfUrl(String addr) throws IOException { ByteArrayOutputStream output = new ByteArrayOutputStream(); System.out.println("test"); URL url = new URL(addr); System.out.println("test2"); IOUtils.copy(url.openStream(), output); return output.toString(); } | 886,030 |
1 | public static void copyFile(File file, File destination) throws Exception { BufferedInputStream in = null; BufferedOutputStream out = null; try { in = new BufferedInputStream(new FileInputStream(file)); out = new BufferedOutputStream(new FileOutputStream(destination)); int c; while ((c = in.read()) != -1) out.write(c); } finally { try { if (out != null) out.close(); } catch (Exception e) { } try { if (in != null) in.close(); } catch (Exception e) { } } } | public void writeTo(OutputStream out) throws IOException, MessagingException { InputStream in = getInputStream(); Base64OutputStream base64Out = new Base64OutputStream(out); IOUtils.copy(in, base64Out); base64Out.close(); mFile.delete(); } | 886,031 |
0 | public boolean addTextGroup(String key, URL url) { if (_textGroups.contains(key)) return false; String s; Hashtable tg = new Hashtable(); String sGroupKey = "default"; String sGroup[]; Vector vGroup = new Vector(); int cntr; try { BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream())); while ((s = in.readLine()) != null) { if (s.startsWith("[")) { if (vGroup.size() > 0) { sGroup = new String[vGroup.size()]; for (cntr = 0; cntr < vGroup.size(); ++cntr) sGroup[cntr] = (String) vGroup.elementAt(cntr); tg.put(sGroupKey, sGroup); vGroup.removeAllElements(); } sGroupKey = s.substring(1, s.indexOf(']')); } else { vGroup.addElement(s); } } if (vGroup.size() > 0) { sGroup = new String[vGroup.size()]; for (cntr = 0; cntr < vGroup.size(); ++cntr) sGroup[cntr] = (String) vGroup.elementAt(cntr); tg.put(sGroupKey, sGroup); } in.close(); } catch (IOException ioe) { System.err.println("Error reading file for " + key); System.err.println(ioe.getMessage()); return false; } _textGroups.put(key, tg); return true; } | public static void main(String[] args) throws Exception { for (int n = 0; n < 8; n++) { new Thread() { public void run() { try { URL url = new URL("http://localhost:8080/WebGISTileServer/index.jsp?token_timeout=true"); URLConnection uc = url.openConnection(); uc.addRequestProperty("Referer", "http://localhost:8080/index.jsp"); BufferedReader rd = new BufferedReader(new InputStreamReader(uc.getInputStream())); String line; while ((line = rd.readLine()) != null) System.out.println(line); } catch (Exception e) { e.printStackTrace(); } } }.start(); } } | 886,032 |
1 | public void save(String oid, String key, Serializable obj) throws PersisterException { String lock = getLock(oid); if (lock == null) { throw new PersisterException("Object does not exist: OID = " + oid); } else if (!NULL.equals(lock) && (!lock.equals(key))) { throw new PersisterException("The object is currently locked with another key: OID = " + oid + ", LOCK = " + lock + ", KEY = " + key); } Connection conn = null; PreparedStatement ps = null; try { byte[] data = serialize(obj); conn = _ds.getConnection(); conn.setAutoCommit(true); ps = conn.prepareStatement("update " + _table_name + " set " + _data_col + " = ?, " + _ts_col + " = ? where " + _oid_col + " = ?"); ps.setBinaryStream(1, new ByteArrayInputStream(data), data.length); ps.setLong(2, System.currentTimeMillis()); ps.setString(3, oid); ps.executeUpdate(); } catch (Throwable th) { if (conn != null) { try { conn.rollback(); } catch (Throwable th2) { } } throw new PersisterException("Failed to save object: OID = " + oid, th); } finally { if (ps != null) { try { ps.close(); } catch (Throwable th) { } } if (conn != null) { try { conn.close(); } catch (Throwable th) { } } } } | private Vendor createVendor() throws SQLException, IOException { Connection conn = null; Statement st = null; String query = null; ResultSet rs = null; try { conn = dataSource.getConnection(); st = conn.createStatement(); query = "insert into " + DB.Tbl.vend + "(" + col.title + "," + col.addDate + "," + col.authorId + ") values('" + title + "',now()," + user.getId() + ")"; st.executeUpdate(query, new String[] { col.id }); rs = st.getGeneratedKeys(); if (!rs.next()) { throw new SQLException("Не удается получить generated key 'id' в таблице vendors."); } int genId = rs.getInt(1); rs.close(); saveDescr(genId); conn.commit(); Vendor v = new Vendor(); v.setId(genId); v.setTitle(title); v.setDescr(descr); VendorViewer.getInstance().vendorListChanged(); return v; } catch (SQLException e) { try { conn.rollback(); } catch (Exception e1) { } throw e; } finally { try { rs.close(); } catch (Exception e) { } try { st.close(); } catch (Exception e) { } try { conn.close(); } catch (Exception e) { } } } | 886,033 |
0 | public static String getPageSource(String url) throws ClientProtocolException, IOException { HttpClient client = new DefaultHttpClient(); HttpGet request = new HttpGet(url); HttpResponse response = client.execute(request); InputStream in = response.getEntity().getContent(); BufferedReader reader = new BufferedReader(new InputStreamReader(in)); StringBuilder source = new StringBuilder(); String line = null; while ((line = reader.readLine()) != null) source.append(line); in.close(); return source.toString(); } | public static Object getInputStream(String name, boolean showMsg, URL appletDocumentBase, String appletProxy) { String errorMessage = null; int iurlPrefix; for (iurlPrefix = urlPrefixes.length; --iurlPrefix >= 0; ) if (name.startsWith(urlPrefixes[iurlPrefix])) break; boolean isURL = (iurlPrefix >= 0); boolean isApplet = (appletDocumentBase != null); InputStream in = null; int length; try { if (isApplet || isURL) { if (isApplet && isURL && appletProxy != null) name = appletProxy + "?url=" + URLEncoder.encode(name, "utf-8"); URL url = (isApplet ? new URL(appletDocumentBase, name) : new URL(name)); name = url.toString(); if (showMsg) Logger.info("FileManager opening " + url.toString()); URLConnection conn = url.openConnection(); length = conn.getContentLength(); in = conn.getInputStream(); } else { if (showMsg) Logger.info("FileManager opening " + name); File file = new File(name); length = (int) file.length(); in = new FileInputStream(file); } return new MonitorInputStream(in, length); } catch (Exception e) { try { if (in != null) in.close(); } catch (IOException e1) { } errorMessage = "" + e; } return errorMessage; } | 886,034 |
1 | public static void copyToFileAndCloseStreams(InputStream istr, File destFile) throws IOException { OutputStream ostr = null; try { ostr = new FileOutputStream(destFile); IOUtils.copy(istr, ostr); } finally { if (ostr != null) ostr.close(); if (istr != null) istr.close(); } } | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 886,035 |
0 | void copyFile(File src, File dst) throws IOException { InputStream in = new FileInputStream(src); OutputStream out = new FileOutputStream(dst); byte[] buf = new byte[1024]; int len; while ((len = in.read(buf)) > 0) out.write(buf, 0, len); in.close(); out.close(); } | @Override public void doPost(HttpServletRequest req, HttpServletResponse resp) throws IOException { resp.setContentType("application/json"); resp.setCharacterEncoding("utf-8"); EntityManager em = EMF.get().createEntityManager(); String url = req.getRequestURL().toString(); String key = req.getParameter("key"); String format = req.getParameter("format"); if (key == null || !key.equals(Keys.APPREGKEY)) { resp.setStatus(HttpServletResponse.SC_UNAUTHORIZED); if (format != null && format.equals("xml")) resp.getWriter().print(Error.notAuthorised("").toXML(em)); else resp.getWriter().print(Error.notAuthorised("").toJSON(em)); em.close(); return; } String appname = req.getParameter("name"); if (appname == null || appname.equals("")) { resp.setStatus(HttpServletResponse.SC_BAD_REQUEST); if (format != null && format.equals("xml")) resp.getWriter().print(Error.noAppId(null).toXML(em)); else resp.getWriter().print(Error.noAppId(null).toJSON(em)); em.close(); return; } StringBuffer appkey = new StringBuffer(); try { MessageDigest algorithm = MessageDigest.getInstance("MD5"); algorithm.reset(); String api = System.nanoTime() + "" + System.identityHashCode(this) + "" + appname; algorithm.update(api.getBytes()); byte[] digest = algorithm.digest(); for (int i = 0; i < digest.length; i++) { appkey.append(Integer.toHexString(0xFF & digest[i])); } } catch (NoSuchAlgorithmException e) { resp.setStatus(HttpServletResponse.SC_INTERNAL_SERVER_ERROR); if (format != null && format.equals("xml")) resp.getWriter().print(Error.unknownError().toXML(em)); else resp.getWriter().print(Error.unknownError().toJSON(em)); log.severe(e.toString()); em.close(); return; } ClientApp app = new ClientApp(); app.setName(appname); app.setKey(appkey.toString()); app.setNumreceipts(0L); EntityTransaction tx = em.getTransaction(); tx.begin(); try { em.persist(app); tx.commit(); } catch (Throwable t) { log.severe("Error persisting application " + app.getName() + ": " + t.getMessage()); tx.rollback(); resp.setStatus(HttpServletResponse.SC_INTERNAL_SERVER_ERROR); if (format != null && format.equals("xml")) resp.getWriter().print(Error.unknownError().toXML(em)); else resp.getWriter().print(Error.unknownError().toJSON(em)); em.close(); return; } resp.setStatus(HttpServletResponse.SC_CREATED); if (format != null && format.equals("xml")) resp.getWriter().print(app.toXML(em)); else resp.getWriter().print(app.toJSON(em)); em.close(); } | 886,036 |
1 | public static boolean copy(InputStream is, File file) { try { IOUtils.copy(is, new FileOutputStream(file)); return true; } catch (Exception e) { logger.severe(e.getMessage()); return false; } } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 886,037 |
1 | public boolean isServerAlive(String pStrURL) { boolean isAlive; long t1 = System.currentTimeMillis(); try { URL url = new URL(pStrURL); BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream())); String inputLine; while ((inputLine = in.readLine()) != null) { logger.fine(inputLine); } logger.info("** Connection successful.. **"); in.close(); isAlive = true; } catch (Exception e) { logger.info("** Connection failed.. **"); e.printStackTrace(); isAlive = false; } long t2 = System.currentTimeMillis(); logger.info("Time taken to check connection: " + (t2 - t1) + " ms."); return isAlive; } | @SuppressWarnings("unchecked") public static <T extends Class> Collection<T> listServices(T serviceType, ClassLoader classLoader) throws IOException, ClassNotFoundException { final Collection<T> result = new LinkedHashSet<T>(); final Enumeration<URL> resouces = classLoader.getResources("META-INF/services/" + serviceType.getName()); while (resouces.hasMoreElements()) { final URL url = resouces.nextElement(); final BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); try { String line = reader.readLine(); while (line != null) { if (line.startsWith("#")) { } else if ("".equals(line.trim())) { } else { final T implClass = (T) Class.forName(line, true, classLoader); if (!serviceType.isAssignableFrom(implClass)) { throw new IllegalStateException(String.format("%s: class %s does not implement required interfafce %s", url, implClass, serviceType)); } result.add(implClass); } line = reader.readLine(); } } finally { reader.close(); } } return result; } | 886,038 |
1 | private void displayDiffResults() throws IOException { File outFile = File.createTempFile("diff", ".htm"); outFile.deleteOnExit(); FileOutputStream outStream = new FileOutputStream(outFile); BufferedWriter out = new BufferedWriter(new OutputStreamWriter(outStream)); out.write("<html><head><title>LOC Differences</title>\n" + SCRIPT + "</head>\n" + "<body bgcolor='#ffffff'>\n" + "<div onMouseOver=\"window.defaultStatus='Metrics'\">\n"); if (addedTable.length() > 0) { out.write("<table border><tr><th>Files Added:</th>" + "<th>Add</th><th>Type</th></tr>"); out.write(addedTable.toString()); out.write("</table><br><br>"); } if (modifiedTable.length() > 0) { out.write("<table border><tr><th>Files Modified:</th>" + "<th>Base</th><th>Del</th><th>Mod</th><th>Add</th>" + "<th>Total</th><th>Type</th></tr>"); out.write(modifiedTable.toString()); out.write("</table><br><br>"); } if (deletedTable.length() > 0) { out.write("<table border><tr><th>Files Deleted:</th>" + "<th>Del</th><th>Type</th></tr>"); out.write(deletedTable.toString()); out.write("</table><br><br>"); } out.write("<table name=METRICS BORDER>\n"); if (modifiedTable.length() > 0 || deletedTable.length() > 0) { out.write("<tr><td>Base: </td><td>"); out.write(Long.toString(base)); out.write("</td></tr>\n<tr><td>Deleted: </td><td>"); out.write(Long.toString(deleted)); out.write("</td></tr>\n<tr><td>Modified: </td><td>"); out.write(Long.toString(modified)); out.write("</td></tr>\n<tr><td>Added: </td><td>"); out.write(Long.toString(added)); out.write("</td></tr>\n<tr><td>New & Changed: </td><td>"); out.write(Long.toString(added + modified)); out.write("</td></tr>\n"); } out.write("<tr><td>Total: </td><td>"); out.write(Long.toString(total)); out.write("</td></tr>\n</table></div>"); redlinesOut.close(); out.flush(); InputStream redlines = new FileInputStream(redlinesTempFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = redlines.read(buffer)) != -1) outStream.write(buffer, 0, bytesRead); outStream.write("</BODY></HTML>".getBytes()); outStream.close(); Browser.launch(outFile.toURL().toString()); } | private boolean _copyPath(String source, String destination, Object handler) { try { FileInputStream fis = new FileInputStream(_fullPathForPath(source)); FileOutputStream fos = new FileOutputStream(_fullPathForPath(destination)); byte[] buffer = new byte[fis.available()]; int read; for (read = fis.read(buffer); read >= 0; read = fis.read(buffer)) { fos.write(buffer, 0, read); } fis.close(); fos.close(); return true; } catch (IOException ioe) { ioe.printStackTrace(); return false; } } | 886,039 |
0 | public static final void sequence(int[] list, int above) { int temp, max, min; boolean tag = true; for (int i = list.length - 1; i >= 0; i--) { for (int j = 0; j < i; j++) { if (above < 0) { if (list[j] < list[j + 1]) { temp = list[j]; list[j] = list[j + 1]; list[j + 1] = temp; tag = true; } } else { if (list[j] > list[j + 1]) { temp = list[j]; list[j] = list[j + 1]; list[j + 1] = temp; tag = true; } } } if (tag == false) break; } } | public void updateResult(Result result) throws UnsupportedEncodingException { HttpPost updateRequest = populateUpdateRequest(result); HttpClient client = clientProvider.getHttpClient(); try { HttpResponse response = client.execute(updateRequest); HttpEntity entity = response.getEntity(); if (entity != null) { InputStream input = entity.getContent(); if (HttpStatus.SC_OK != response.getStatusLine().getStatusCode()) { System.out.println("Request was not accepted by the collection server. Reason:"); System.out.println("Status: " + response.getStatusLine().getStatusCode()); } for (int c = 0; (c = input.read()) > -1; ) { System.out.print((char) c); } entity.consumeContent(); } } catch (ClientProtocolException e) { throw new RuntimeException(e); } catch (IOException e) { throw new RuntimeException(e); } } | 886,040 |
1 | private void processRequest(HttpServletRequest request, HttpServletResponse response) throws IOException { response.setContentType("text/html"); ServletContext ctx = getServletContext(); RequestDispatcher rd = ctx.getRequestDispatcher(SETUP_JSP); HttpSession session = request.getSession(false); if (session == null) { session = request.getSession(true); session.setAttribute(ERROR_TAG, "You need to have run the Sniffer before running " + "the Grinder. Go to <a href=\"/index.jsp\">the start page</a> " + " to run the Sniffer."); rd = ctx.getRequestDispatcher(ERROR_JSP); } else { session.setMaxInactiveInterval(-1); String pValue = request.getParameter(ACTION_TAG); if (pValue != null && pValue.equals(START_TAG)) { rd = ctx.getRequestDispatcher(WAIT_JSP); int p = 1; int t = 1; int c = 1; try { p = Integer.parseInt(request.getParameter("procs")); p = p > MAX_PROCS ? MAX_PROCS : p; } catch (NumberFormatException e) { } try { t = Integer.parseInt(request.getParameter("threads")); t = t > MAX_THREADS ? MAX_THREADS : t; } catch (NumberFormatException e) { } try { c = Integer.parseInt(request.getParameter("cycles")); c = c > MAX_CYCLES ? MAX_CYCLES : c; } catch (NumberFormatException e) { } try { String dirname = (String) session.getAttribute(OUTPUT_TAG); File workdir = new File(dirname); (new File(dirname + File.separator + LOG_DIR)).mkdir(); FileInputStream gpin = new FileInputStream(GPROPS); FileOutputStream gpout = new FileOutputStream(dirname + File.separator + GPROPS); copyBytes(gpin, gpout); gpin.close(); InitialContext ictx = new InitialContext(); Boolean isSecure = (Boolean) session.getAttribute(SECURE_TAG); if (isSecure.booleanValue()) { gpout.write(("grinder.plugin=" + "net.grinder.plugin.http.HttpsPlugin" + "\n").getBytes()); String certificate = (String) ictx.lookup(CERTIFICATE); String password = (String) ictx.lookup(PASSWORD); gpout.write(("grinder.plugin.parameter.clientCert=" + certificate + "\n").getBytes()); gpout.write(("grinder.plugin.parameter.clientCertPassword=" + password + "\n").getBytes()); } else { gpout.write(("grinder.plugin=" + "net.grinder.plugin.http.HttpPlugin\n").getBytes()); } gpout.write(("grinder.processes=" + p + "\n").getBytes()); gpout.write(("grinder.threads=" + t + "\n").getBytes()); gpout.write(("grinder.cycles=" + c + "\n").getBytes()); gpin = new FileInputStream(dirname + File.separator + SNIFFOUT); copyBytes(gpin, gpout); gpin.close(); gpout.close(); String classpath = (String) ictx.lookup(CLASSPATH); String cmd[] = new String[JAVA_PROCESS.length + 1 + GRINDER_PROCESS.length]; int i = 0; int n = JAVA_PROCESS.length; System.arraycopy(JAVA_PROCESS, 0, cmd, i, n); cmd[n] = classpath; i = n + 1; n = GRINDER_PROCESS.length; System.arraycopy(GRINDER_PROCESS, 0, cmd, i, n); for (int j = 0; j < cmd.length; ++j) { System.out.print(cmd[j] + " "); } Process proc = Runtime.getRuntime().exec(cmd, null, workdir); session.setAttribute(PROCESS_TAG, proc); } catch (NamingException e) { e.printStackTrace(); session.setAttribute(ERROR_MSG_TAG, e.toString()); session.setMaxInactiveInterval(TIMEOUT); rd = ctx.getRequestDispatcher(ERROR_JSP); } catch (Throwable e) { e.printStackTrace(response.getWriter()); throw new IOException(e.getMessage()); } } else if (pValue != null && pValue.equals(CHECK_TAG)) { boolean finished = true; try { Process p = (Process) session.getAttribute(PROCESS_TAG); int result = p.exitValue(); } catch (IllegalThreadStateException e) { finished = false; } if (finished) { session.setMaxInactiveInterval(TIMEOUT); rd = ctx.getRequestDispatcher(RESULTS_JSP); } else { rd = ctx.getRequestDispatcher(WAIT_JSP); } } try { rd.forward(request, response); } catch (ServletException e) { e.printStackTrace(response.getWriter()); throw new IOException(e.getMessage()); } } } | public void writeTo(File f) throws IOException { if (state != STATE_OK) throw new IllegalStateException("Upload failed"); if (tempLocation == null) throw new IllegalStateException("File already saved"); if (f.isDirectory()) f = new File(f, filename); FileInputStream fis = new FileInputStream(tempLocation); FileOutputStream fos = new FileOutputStream(f); byte[] buf = new byte[BUFFER_SIZE]; try { int i = 0; while ((i = fis.read(buf)) != -1) fos.write(buf, 0, i); } finally { deleteTemporaryFile(); fis.close(); fos.close(); } } | 886,041 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public void copy(String fromFileName, String toFileName) throws IOException { log.info("copy() file:" + fromFileName + " toFile:" + toFileName); File fromFile = new File(fromFileName); File toFile = new File(toFileName); if (!fromFile.exists()) throw new IOException("FileCopy: " + "no such source file: " + fromFileName); if (!fromFile.isFile()) throw new IOException("FileCopy: " + "can't copy directory: " + fromFileName); if (!fromFile.canRead()) throw new IOException("FileCopy: " + "source file is unreadable: " + fromFileName); if (toFile.isDirectory()) toFile = new File(toFile, fromFile.getName()); if (toFile.exists()) { if (!toFile.canWrite()) throw new IOException("FileCopy: " + "destination file is unwriteable: " + toFileName); } else { String parent = toFile.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) throw new IOException("FileCopy: " + "destination directory doesn't exist: " + parent); if (dir.isFile()) throw new IOException("FileCopy: " + "destination is not a directory: " + parent); if (!dir.canWrite()) throw new IOException("FileCopy: " + "destination directory is unwriteable: " + parent); } FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(fromFile); to = new FileOutputStream(toFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead); } finally { if (from != null) try { from.close(); } catch (IOException e) { log.error(e.getMessage()); } if (to != null) try { to.close(); } catch (IOException e) { log.error(e.getMessage()); } } } | 886,042 |
0 | public Map load() throws IOException { rpdMap = new HashMap(); try { SAXParserFactory factory = SAXParserFactory.newInstance(); XMLReader xr = factory.newSAXParser().getXMLReader(); ConfigHandler handler = new ConfigHandler(); xr.setContentHandler(handler); xr.setErrorHandler(handler); InputStream is = url.openStream(); xr.parse(new InputSource(is)); is.close(); } catch (SAXParseException e) { String msg = "Error while parsing line " + e.getLineNumber() + " of " + url + ": " + e.getMessage(); throw new IOException(msg); } catch (SAXException e) { throw new IOException("Problem with XML: " + e); } catch (ParserConfigurationException e) { throw new IOException(e.getMessage()); } return rpdMap; } | public InputStream getDaoConfig(String connectionType) throws IOException { URL url = null; InputStream inStream = null; if (connectionType.equals(SQL.ORACLE)) { url = com.apelon.selext.db.config.MatchLoadConfig.class.getResource("oracle.xml"); } else if (connectionType.equals(SQL.SQL2K)) { url = com.apelon.selext.db.config.MatchLoadConfig.class.getResource("sql2k.xml"); } else if (connectionType.equals(SQL.CACHE)) { url = com.apelon.selext.db.config.MatchLoadConfig.class.getResource("cache.xml"); } else if (connectionType.equals(SQL.DB2)) { url = com.apelon.selext.db.config.MatchLoadConfig.class.getResource("db2.xml"); } else { Categories.dataXml().error("* Problem: Unknown connection type: " + connectionType); } try { inStream = url.openStream(); } catch (NullPointerException npe) { Categories.dataXml().error("* Problem: Undefined resource URL: " + npe.getMessage()); throw npe; } return inStream; } | 886,043 |
0 | public static final String encryptMD5(String decrypted) { try { MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(decrypted.getBytes()); byte hash[] = md5.digest(); md5.reset(); return hashToHex(hash); } catch (NoSuchAlgorithmException _ex) { return null; } } | private static String completeGet(String encodedURLStr) throws IOException { URL url = new URL(encodedURLStr); HttpURLConnection connection = initConnection(url); String result = getReply(url.openStream()); connection.disconnect(); return result; } | 886,044 |
0 | public BufferedImage extract() throws DjatokaException { boolean useRegion = false; int left = 0; int top = 0; int width = 50; int height = 50; boolean useleftDouble = false; Double leftDouble = 0.0; boolean usetopDouble = false; Double topDouble = 0.0; boolean usewidthDouble = false; Double widthDouble = 0.0; boolean useheightDouble = false; Double heightDouble = 0.0; if (params.getRegion() != null) { StringTokenizer st = new StringTokenizer(params.getRegion(), "{},"); String token; if ((token = st.nextToken()).contains(".")) { topDouble = Double.parseDouble(token); usetopDouble = true; } else top = Integer.parseInt(token); if ((token = st.nextToken()).contains(".")) { leftDouble = Double.parseDouble(token); useleftDouble = true; } else left = Integer.parseInt(token); if ((token = st.nextToken()).contains(".")) { heightDouble = Double.parseDouble(token); useheightDouble = true; } else height = Integer.parseInt(token); if ((token = st.nextToken()).contains(".")) { widthDouble = Double.parseDouble(token); usewidthDouble = true; } else width = Integer.parseInt(token); useRegion = true; } try { if (is != null) { File f = File.createTempFile("tmp", ".jp2"); f.deleteOnExit(); FileOutputStream fos = new FileOutputStream(f); sourceFile = f.getAbsolutePath(); IOUtils.copyStream(is, fos); is.close(); fos.close(); } } catch (IOException e) { throw new DjatokaException(e); } try { Jp2_source inputSource = new Jp2_source(); Kdu_compressed_source input = null; Jp2_family_src jp2_family_in = new Jp2_family_src(); Jp2_locator loc = new Jp2_locator(); jp2_family_in.Open(sourceFile, true); inputSource.Open(jp2_family_in, loc); inputSource.Read_header(); input = inputSource; Kdu_codestream codestream = new Kdu_codestream(); codestream.Create(input); Kdu_channel_mapping channels = new Kdu_channel_mapping(); if (inputSource.Exists()) channels.Configure(inputSource, false); else channels.Configure(codestream); int ref_component = channels.Get_source_component(0); Kdu_coords ref_expansion = getReferenceExpansion(ref_component, channels, codestream); Kdu_dims image_dims = new Kdu_dims(); codestream.Get_dims(ref_component, image_dims); Kdu_coords imageSize = image_dims.Access_size(); Kdu_coords imagePosition = image_dims.Access_pos(); if (useleftDouble) left = imagePosition.Get_x() + (int) Math.round(leftDouble * imageSize.Get_x()); if (usetopDouble) top = imagePosition.Get_y() + (int) Math.round(topDouble * imageSize.Get_y()); if (useheightDouble) height = (int) Math.round(heightDouble * imageSize.Get_y()); if (usewidthDouble) width = (int) Math.round(widthDouble * imageSize.Get_x()); if (useRegion) { imageSize.Set_x(width); imageSize.Set_y(height); imagePosition.Set_x(left); imagePosition.Set_y(top); } int reduce = 1 << params.getLevelReductionFactor(); imageSize.Set_x(imageSize.Get_x() * ref_expansion.Get_x()); imageSize.Set_y(imageSize.Get_y() * ref_expansion.Get_y()); imagePosition.Set_x(imagePosition.Get_x() * ref_expansion.Get_x() / reduce - ((ref_expansion.Get_x() / reduce - 1) / 2)); imagePosition.Set_y(imagePosition.Get_y() * ref_expansion.Get_y() / reduce - ((ref_expansion.Get_y() / reduce - 1) / 2)); Kdu_dims view_dims = new Kdu_dims(); view_dims.Assign(image_dims); view_dims.Access_size().Set_x(imageSize.Get_x()); view_dims.Access_size().Set_y(imageSize.Get_y()); int region_buf_size = imageSize.Get_x() * imageSize.Get_y(); int[] region_buf = new int[region_buf_size]; Kdu_region_decompressor decompressor = new Kdu_region_decompressor(); decompressor.Start(codestream, channels, -1, params.getLevelReductionFactor(), 16384, image_dims, ref_expansion, new Kdu_coords(1, 1), false, Kdu_global.KDU_WANT_OUTPUT_COMPONENTS); Kdu_dims new_region = new Kdu_dims(); Kdu_dims incomplete_region = new Kdu_dims(); Kdu_coords viewSize = view_dims.Access_size(); incomplete_region.Assign(image_dims); int[] imgBuffer = new int[viewSize.Get_x() * viewSize.Get_y()]; int[] kduBuffer = null; while (decompressor.Process(region_buf, image_dims.Access_pos(), 0, 0, region_buf_size, incomplete_region, new_region)) { Kdu_coords newOffset = new_region.Access_pos(); Kdu_coords newSize = new_region.Access_size(); newOffset.Subtract(view_dims.Access_pos()); kduBuffer = region_buf; int imgBuffereIdx = newOffset.Get_x() + newOffset.Get_y() * viewSize.Get_x(); int kduBufferIdx = 0; int xDiff = viewSize.Get_x() - newSize.Get_x(); for (int j = 0; j < newSize.Get_y(); j++, imgBuffereIdx += xDiff) { for (int i = 0; i < newSize.Get_x(); i++) { imgBuffer[imgBuffereIdx++] = kduBuffer[kduBufferIdx++]; } } } BufferedImage image = new BufferedImage(imageSize.Get_x(), imageSize.Get_y(), BufferedImage.TYPE_INT_RGB); image.setRGB(0, 0, viewSize.Get_x(), viewSize.Get_y(), imgBuffer, 0, viewSize.Get_x()); if (params.getRotationDegree() > 0) { image = ImageProcessingUtils.rotate(image, params.getRotationDegree()); } decompressor.Native_destroy(); channels.Native_destroy(); if (codestream.Exists()) codestream.Destroy(); inputSource.Native_destroy(); input.Native_destroy(); jp2_family_in.Native_destroy(); return image; } catch (KduException e) { e.printStackTrace(); throw new DjatokaException(e); } catch (Exception e) { e.printStackTrace(); throw new DjatokaException(e); } } | public int update(BusinessObject o) throws DAOException { int update = 0; Account acc = (Account) o; try { PreparedStatement pst = connection.prepareStatement(XMLGetQuery.getQuery("UPDATE_ACCOUNT")); pst.setString(1, acc.getName()); pst.setString(2, acc.getAddress()); pst.setInt(3, acc.getCurrency()); pst.setInt(4, acc.getMainContact()); pst.setBoolean(5, acc.isArchived()); pst.setInt(6, acc.getId()); update = pst.executeUpdate(); if (update <= 0) { connection.rollback(); throw new DAOException("Number of rows <= 0"); } else if (update > 1) { connection.rollback(); throw new DAOException("Number of rows > 1"); } connection.commit(); } catch (SQLException e) { Log.write(e.getMessage()); throw new DAOException("A SQLException has occured"); } catch (NullPointerException npe) { Log.write(npe.getMessage()); throw new DAOException("Connection null"); } return update; } | 886,045 |
1 | @RequestMapping("/import") public String importPicture(@ModelAttribute PictureImportCommand command) throws IOException { ByteArrayOutputStream baos = new ByteArrayOutputStream(); URL url = command.getUrl(); IOUtils.copy(url.openStream(), baos); byte[] imageData = imageFilterService.touchupImage(baos.toByteArray()); String filename = StringUtils.substringAfterLast(url.getPath(), "/"); String email = userService.getCurrentUser().getEmail(); Picture picture = new Picture(email, filename, command.getDescription(), imageData); pictureRepository.store(picture); return "redirect:/picture/gallery"; } | void shutdown(final boolean unexpected) { if (unexpected) { log.warn("S H U T D O W N --- received unexpected shutdown request."); } else { log.info("S H U T D O W N --- start regular shutdown."); } if (this.uncaughtException != null) { log.warn("Shutdown probably caused by the following Exception.", this.uncaughtException); } log.error("check if we need the controler listener infrastructure"); if (this.dumpDataAtEnd) { new PopulationWriter(this.population, this.network).write(this.controlerIO.getOutputFilename(FILENAME_POPULATION)); new NetworkWriter(this.network).write(this.controlerIO.getOutputFilename(FILENAME_NETWORK)); new ConfigWriter(this.config).write(this.controlerIO.getOutputFilename(FILENAME_CONFIG)); if (!unexpected && this.getConfig().vspExperimental().isWritingOutputEvents()) { File toFile = new File(this.controlerIO.getOutputFilename("output_events.xml.gz")); File fromFile = new File(this.controlerIO.getIterationFilename(this.getLastIteration(), "events.xml.gz")); IOUtils.copyFile(fromFile, toFile); } } if (unexpected) { log.info("S H U T D O W N --- unexpected shutdown request completed."); } else { log.info("S H U T D O W N --- regular shutdown completed."); } try { Runtime.getRuntime().removeShutdownHook(this.shutdownHook); } catch (IllegalStateException e) { log.info("Cannot remove shutdown hook. " + e.getMessage()); } this.shutdownHook = null; this.collectLogMessagesAppender = null; IOUtils.closeOutputDirLogging(); } | 886,046 |
1 | private String getMAC(String password) { MessageDigest md = null; try { md = MessageDigest.getInstance("SHA"); } catch (NoSuchAlgorithmException e) { } try { md.update(password.getBytes("UTF-8")); } catch (UnsupportedEncodingException e) { } byte raw[] = md.digest(); String hash = (new BASE64Encoder()).encode(raw); return hash; } | @Override public String compute_hash(String plaintext) { MessageDigest d; try { d = MessageDigest.getInstance(get_algorithm_name()); d.update(plaintext.getBytes()); byte[] hash = d.digest(); StringBuffer sb = new StringBuffer(); for (byte b : hash) sb.append(String.format("%02x", b)); return sb.toString(); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } return null; } | 886,047 |
1 | public void write(File file) throws Exception { if (getGEDCOMFile() != null) { size = getGEDCOMFile().length(); if (!getGEDCOMFile().renameTo(file)) { BufferedInputStream in = null; BufferedOutputStream out = null; try { in = new BufferedInputStream(new FileInputStream(getGEDCOMFile())); out = new BufferedOutputStream(new FileOutputStream(file)); IOUtils.copy(in, out); } finally { if (in != null) { try { in.close(); } catch (IOException e) { } } if (out != null) { try { out.close(); } catch (IOException e) { } } } } } else { throw new FileUploadException("Cannot write uploaded file to disk!"); } } | private void transform(CommandLine commandLine) throws IOException { Reader reader; if (commandLine.hasOption('i')) { reader = createFileReader(commandLine.getOptionValue('i')); } else { reader = createStandardInputReader(); } Writer writer; if (commandLine.hasOption('o')) { writer = createFileWriter(commandLine.getOptionValue('o')); } else { writer = createStandardOutputWriter(); } String mapRule = commandLine.getOptionValue("m"); try { SrxTransformer transformer = new SrxAnyTransformer(); Map<String, Object> parameterMap = new HashMap<String, Object>(); if (mapRule != null) { parameterMap.put(Srx1Transformer.MAP_RULE_NAME, mapRule); } transformer.transform(reader, writer, parameterMap); } finally { cleanupReader(reader); cleanupWriter(writer); } } | 886,048 |
0 | public final String latestVersion() { String latestVersion = ""; try { URL url = new URL(Constants.officialSite + ":80/LatestVersion"); BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream())); String str; while ((str = in.readLine()) != null) { latestVersion = str; } in.close(); } catch (MalformedURLException e) { } catch (IOException e) { } return latestVersion; } | public static OMElement createOMRequest(String file, int count, String[] documentIds) throws Exception { ObjectFactory factory = new ObjectFactory(); SubmitDocumentRequest sdr = factory.createSubmitDocumentRequest(); IdType pid = factory.createIdType(); pid.setRoot("1.3.6.1.4.1.21367.2005.3.7.6fa11e467880478"); sdr.setPatientId(pid); ClassLoader classLoader = JUnitHelper.class.getClassLoader(); DocumentsType documents = factory.createDocumentsType(); for (int i = 0; i < count; ++i) { DocumentType document = factory.createDocumentType(); if ((documentIds != null) && (documentIds.length > i)) { document.setId(documentIds[i]); } CodeType type = factory.createCodeType(); type.setCode("51855-5"); type.setCodeSystem("2.16.840.1.113883.6.1"); document.setType(type); ByteArrayOutputStream bos = new ByteArrayOutputStream(); InputStream is = classLoader.getResourceAsStream(file); assertNotNull(is); IOUtils.copy(is, bos); document.setContent(bos.toByteArray()); documents.getDocument().add(document); } sdr.setDocuments(documents); QName qname = new QName(URIConstants.XDSBRIDGE_URI, "SubmitDocumentRequest"); JAXBContext jc = JAXBContext.newInstance(SubmitDocumentRequest.class); Marshaller marshaller = jc.createMarshaller(); marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, Boolean.TRUE); JAXBElement element = new JAXBElement(qname, sdr.getClass(), sdr); StringWriter sw = new StringWriter(); marshaller.marshal(element, sw); String xml = sw.toString(); logger.debug(xml); OMElement result = AXIOMUtil.stringToOM(OMAbstractFactory.getOMFactory(), xml); List<OMElement> list = XPathHelper.selectNodes(result, "./ns:Documents/ns:Document/ns:Content", URIConstants.XDSBRIDGE_URI); for (OMElement contentNode : list) { OMText binaryNode = (OMText) contentNode.getFirstOMChild(); if (binaryNode != null) { binaryNode.setOptimize(true); } } return result; } | 886,049 |
0 | public String getHtmlSource(String url) { StringBuffer codeBuffer = null; BufferedReader in = null; URLConnection uc = null; try { uc = new URL(url).openConnection(); uc.setRequestProperty("User-Agent", "Mozilla/4.0 (compatible; MSIE 5.0; Windows XP; DigExt)"); in = new BufferedReader(new InputStreamReader(uc.getInputStream(), "utf-8")); codeBuffer = new StringBuffer(); String tempCode = ""; while ((tempCode = in.readLine()) != null) { codeBuffer.append(tempCode).append("\n"); } in.close(); tempCode = null; } catch (MalformedURLException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } finally { if (null != in) in = null; if (null != uc) uc = null; } return codeBuffer.toString(); } | public static String getEncryptedPassword(String clearTextPassword) { if (StringUtil.isEmpty(clearTextPassword)) return ""; try { MessageDigest md = MessageDigest.getInstance("SHA-256"); md.update(clearTextPassword.getBytes()); return new sun.misc.BASE64Encoder().encode(md.digest()); } catch (NoSuchAlgorithmException e) { _log.error("Failed to encrypt password.", e); } return ""; } | 886,050 |
1 | private String buildShaHashOf(String source) { try { MessageDigest md = MessageDigest.getInstance("SHA"); md.update(source.getBytes()); return new BigInteger(1, md.digest()).toString(16); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); return ""; } } | public char check(String password) { if (captchaRandom.equals("null")) { return 's'; } if (captchaRandom.equals("used")) { return 'm'; } String encryptionBase = secret + captchaRandom; if (!alphabet.equals(ALPHABET_DEFAULT) || letters != LETTERS_DEFAULT) { encryptionBase += ":" + alphabet + ":" + letters; } MessageDigest md5; byte[] digest = { 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 }; try { md5 = MessageDigest.getInstance("MD5"); md5.update(encryptionBase.getBytes()); digest = md5.digest(); } catch (NoSuchAlgorithmException e) { } String correctPassword = ""; int index; for (int i = 0; i < letters; i++) { index = (digest[i] + 256) % 256 % alphabet.length(); correctPassword += alphabet.substring(index, index + 1); } if (!password.equals(correctPassword)) { return 'w'; } else { captchaRandom = "used"; return 't'; } } | 886,051 |
0 | public WordEntry[] getVariants(String word) throws MatchPackException { String upperWord = word.toUpperCase(); if (variantsDictionary == null) { try { long start = System.currentTimeMillis(); URL url = this.getClass().getResource("varlex.dic"); ObjectInputStream si = new ObjectInputStream(url.openStream()); variantsDictionary = (Map) si.readObject(); long end = System.currentTimeMillis(); System.out.println("loaded " + (end - start) + "ms"); si.close(); } catch (Exception e) { throw new MatchPackException("cannot load: varlex.dic " + e.getMessage()); } } List l = (List) variantsDictionary.get(upperWord); if (l == null) { return new WordEntry[0]; } return (WordEntry[]) l.toArray(new WordEntry[0]); } | @LargeTest public void testThreadCheck() throws Exception { ContentResolver resolver = getContext().getContentResolver(); GoogleHttpClient client = new GoogleHttpClient(resolver, "Test", false); try { HttpGet method = new HttpGet(mServerUrl); AndroidHttpClient.setThreadBlocked(true); try { client.execute(method); fail("\"thread forbids HTTP requests\" exception expected"); } catch (RuntimeException e) { if (!e.toString().contains("forbids HTTP requests")) throw e; } finally { AndroidHttpClient.setThreadBlocked(false); } HttpResponse response = client.execute(method); assertEquals("/", EntityUtils.toString(response.getEntity())); } finally { client.close(); } } | 886,052 |
1 | public static void zip() throws Exception { System.out.println("zip()"); ZipOutputStream zipout = new ZipOutputStream(new FileOutputStream(new File("/zip/myzip.zip"))); ZipEntry entry = new ZipEntry("asdf.script"); zipout.putNextEntry(entry); byte buffer[] = new byte[BLOCKSIZE]; FileInputStream in = new FileInputStream(new File("/zip/asdf.script")); for (int length; (length = in.read(buffer, 0, BLOCKSIZE)) != -1; ) zipout.write(buffer, 0, length); in.close(); zipout.closeEntry(); zipout.close(); } | public static void main(String[] args) { try { int encodeFlag = 0; if (args[0].equals("-e")) { encodeFlag = Base64.ENCODE; } else if (args[0].equals("-d")) { encodeFlag = Base64.DECODE; } String infile = args[1]; String outfile = args[2]; File fin = new File(infile); FileInputStream fis = new FileInputStream(fin); BufferedInputStream bis = new BufferedInputStream(fis); Base64.InputStream b64in = new Base64.InputStream(bis, encodeFlag | Base64.DO_BREAK_LINES); File fout = new File(outfile); FileOutputStream fos = new FileOutputStream(fout); BufferedOutputStream bos = new BufferedOutputStream(fos); byte[] buff = new byte[1024]; int read = -1; while ((read = b64in.read(buff)) >= 0) { bos.write(buff, 0, read); } bos.close(); b64in.close(); } catch (Exception e) { e.printStackTrace(); } } | 886,053 |
0 | public void fileUpload() throws Exception { DefaultHttpClient httpclient = new DefaultHttpClient(); HttpPost httppost = new HttpPost(postURL); MultipartEntity reqEntity = new MultipartEntity(HttpMultipartMode.BROWSER_COMPATIBLE); reqEntity.addPart("fff", new MonitoredFileBody(file, uploadProgress)); httppost.setEntity(reqEntity); NULogger.getLogger().info("Now uploading your file into 2shared.com. Please wait......................"); status = UploadStatus.UPLOADING; HttpResponse response = httpclient.execute(httppost); status = UploadStatus.GETTINGLINK; HttpEntity resEntity = response.getEntity(); if (resEntity != null) { String page = EntityUtils.toString(resEntity); NULogger.getLogger().log(Level.INFO, "PAGE :{0}", page); } } | public static String[] bubbleSort(String[] unsortedString, boolean ascending) { if (unsortedString.length < 2) return unsortedString; String[] sortedString = new String[unsortedString.length]; for (int i = 0; i < unsortedString.length; i++) { sortedString[i] = unsortedString[i]; } if (ascending) { for (int i = 0; i < sortedString.length - 1; i++) { for (int j = 1; j < sortedString.length - 1 - i; j++) if (sortedString[j + 1].compareToIgnoreCase(sortedString[j]) < 0) { String swap = sortedString[j]; sortedString[j] = sortedString[j + 1]; sortedString[j + 1] = swap; } } } else { for (int i = sortedString.length - 2; i >= 0; i--) { for (int j = sortedString.length - 2 - i; j >= 0; j--) if (sortedString[j + 1].compareToIgnoreCase(sortedString[j]) > 0) { String swap = sortedString[j]; sortedString[j] = sortedString[j + 1]; sortedString[j + 1] = swap; } } } return sortedString; } | 886,054 |
1 | public static String MD5(String text) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md; md = MessageDigest.getInstance("MD5"); byte[] md5hash = new byte[32]; md.update(text.getBytes("iso-8859-1"), 0, text.length()); md5hash = md.digest(); return convertToHex(md5hash); } | public static String createHash(String seed) { MessageDigest md; try { md = MessageDigest.getInstance("SHA"); } catch (NoSuchAlgorithmException e) { throw new RuntimeException("Can't happen!", e); } try { md.update(seed.getBytes(CHARSET)); md.update(String.valueOf(System.currentTimeMillis()).getBytes(CHARSET)); return toHexString(md.digest()); } catch (UnsupportedEncodingException e) { throw new RuntimeException("Can't happen!", e); } } | 886,055 |
0 | public static final void main(String[] args) throws FileNotFoundException, IOException { ArrayList<String[]> result = new ArrayList<String[]>(); IStream is = new StreamImpl(); IOUtils.copy(new FileInputStream("H:\\7-项目预算表.xlsx"), is.getOutputStream()); int count = loadExcel(result, is, 0, 0, -1, 16, 1); System.out.println(count); for (String[] rs : result) { for (String r : rs) { System.out.print(r + "\t"); } System.out.println(); } } | public Vector getData(DataDescription descr, Station station, DateInterval dateInterval, int sampling) throws ApiException { Connection con = null; Statement stmt = null; String table = (descr != null) ? descr.getTable() : null; Vector dsList = new Vector(); try { String wsflag = Settings.get(table + ".useWebService"); if ("yes".equals(wsflag) || "true".equals(wsflag)) { String serviceUrl = Settings.get(table + ".dataServiceUrl"); String serviceUser = Settings.get(table + ".dataServiceUser"); String servicePassword = Settings.get(table + ".dataServicePassword"); Call call = (Call) (new Service()).createCall(); call.setTargetEndpointAddress(serviceUrl); call.setOperationName("getData"); if (serviceUser != null) { call.setUsername(serviceUser); if (servicePassword != null) { call.setPassword(servicePassword); } } if (log.isDebugEnabled()) { log.debug("Service " + serviceUrl + " authentication user=" + serviceUser + " passwd=" + servicePassword + " call method getData" + " for table " + table + " station " + ((station != null) ? station.getStn() : "") + " element " + ((descr != null && descr.getElement() != null) ? descr.getElement() : "") + " dateFrom " + dateInterval.getDateFrom().getDayId() + " dateTo " + dateInterval.getDateTo().getDayId() + " sampling " + sampling); } String dssUrl = (String) call.invoke(new Object[] { table, ((station != null) ? station.getStn() : ""), ((descr != null && descr.getElement() != null) ? descr.getElement() : ""), "" + dateInterval.getDateFrom().getDayId(), "" + dateInterval.getDateTo().getDayId(), "", "" + sampling }); if (log.isDebugEnabled()) { log.debug("Service return url '" + dssUrl + "'"); } if (dssUrl != null && !"".equals(dssUrl)) { URL dataurl = new URL(dssUrl); DataSequenceSet dsstmp = readDataSet(dataurl.openStream()); if (dsstmp != null && dsstmp.size() > 0) { dsList.addAll(dsstmp); if (log.isDebugEnabled()) { log.debug("Data set list size is " + dsstmp.size()); } } else { if (log.isDebugEnabled()) { log.debug("Data set list is empty"); } } } } else { con = ConnectionPool.getConnection(table); stmt = con.createStatement(); String className = Settings.get(table + ".classGetter"); if (className == null) { throw new ApiException("Undefined classGetter field for table '" + table + "'"); } dsList = ((DBAccess) Class.forName(className).newInstance()).getDataSequence(stmt, descr, station, dateInterval, sampling); } return dsList; } catch (Exception e) { e.printStackTrace(); throw new ApiException("Data are not available: " + e.toString()); } finally { try { if (stmt != null) { stmt.close(); } } catch (Exception e) { } ConnectionPool.releaseConnection(con); } } | 886,056 |
1 | public static void copyCompletely(InputStream input, OutputStream output) throws IOException { if ((output instanceof FileOutputStream) && (input instanceof FileInputStream)) { try { FileChannel target = ((FileOutputStream) output).getChannel(); FileChannel source = ((FileInputStream) input).getChannel(); source.transferTo(0, Integer.MAX_VALUE, target); source.close(); target.close(); return; } catch (Exception e) { } } byte[] buf = new byte[8192]; while (true) { int length = input.read(buf); if (length < 0) break; output.write(buf, 0, length); } try { input.close(); } catch (IOException ignore) { } try { output.close(); } catch (IOException ignore) { } } | public static void copy(String from_name, String to_name) throws IOException { File from_file = new File(from_name); File to_file = new File(to_name); if (!from_file.exists()) abort("FileCopy: no such source file: " + from_name); if (!from_file.isFile()) abort("FileCopy: can't copy directory: " + from_name); if (!from_file.canRead()) abort("FileCopy: source file is unreadable: " + from_name); if (to_file.isDirectory()) to_file = new File(to_file, from_file.getName()); String parent = to_file.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) abort("FileCopy: destination directory doesn't exist: " + parent); if (dir.isFile()) abort("FileCopy: destination is not a directory: " + parent); if (!dir.canWrite()) abort("FileCopy: destination directory is unwriteable: " + parent); FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(from_file); to = new FileOutputStream(to_file); byte[] buffer = new byte[4096]; int bytes_read; while ((bytes_read = from.read(buffer)) != -1) to.write(buffer, 0, bytes_read); } finally { if (from != null) try { from.close(); } catch (IOException e) { ; } if (to != null) try { to.close(); } catch (IOException e) { ; } } } | 886,057 |
1 | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | public static void copy(Object arg1, Object arg2) { Writer writer = null; Reader reader = null; InputStream inStream = null; OutputStream outStream = null; try { if (arg2 instanceof Writer) { writer = (Writer) arg2; if (arg1 instanceof Reader) { reader = (Reader) arg1; copy(reader, writer); } else if (arg1 instanceof String) { reader = new FileReader(new File((String) arg1)); copy(reader, writer); } else if (arg1 instanceof File) { reader = new FileReader((File) arg1); copy(reader, writer); } else if (arg1 instanceof URL) { copy(((URL) arg1).openStream(), writer); } else if (arg1 instanceof InputStream) { reader = new InputStreamReader((InputStream) arg1); copy(reader, writer); } else if (arg1 instanceof RandomAccessFile) { copy((RandomAccessFile) arg1, writer); } else { throw new TypeError("Invalid first argument to copy()"); } } else if (arg2 instanceof OutputStream) { outStream = (OutputStream) arg2; if (arg1 instanceof Reader) { copy((Reader) arg1, new OutputStreamWriter(outStream)); } else if (arg1 instanceof String) { inStream = new FileInputStream(new File((String) arg1)); copy(inStream, outStream); } else if (arg1 instanceof File) { inStream = new FileInputStream((File) arg1); copy(inStream, outStream); } else if (arg1 instanceof URL) { copy(((URL) arg1).openStream(), outStream); } else if (arg1 instanceof InputStream) { copy((InputStream) arg1, outStream); } else if (arg1 instanceof RandomAccessFile) { copy((RandomAccessFile) arg1, outStream); } else { throw new TypeError("Invalid first argument to copy()"); } } else if (arg2 instanceof RandomAccessFile) { RandomAccessFile out = (RandomAccessFile) arg2; if (arg1 instanceof Reader) { copy((Reader) arg1, out); } else if (arg1 instanceof String) { inStream = new FileInputStream(new File((String) arg1)); copy(inStream, out); } else if (arg1 instanceof File) { inStream = new FileInputStream((File) arg1); copy(inStream, out); } else if (arg1 instanceof URL) { copy(((URL) arg1).openStream(), out); } else if (arg1 instanceof InputStream) { copy((InputStream) arg1, out); } else if (arg1 instanceof RandomAccessFile) { copy((RandomAccessFile) arg1, out); } else { throw new TypeError("Invalid first argument to copy()"); } } else if (arg2 instanceof File || arg2 instanceof String) { File outFile = null; if (arg2 instanceof File) { outFile = (File) arg2; } else { outFile = new File((String) arg2); } outStream = new FileOutputStream(outFile); if (arg1 instanceof Reader) { copy((Reader) arg1, new OutputStreamWriter(outStream)); } else if (arg1 instanceof String) { inStream = new FileInputStream(new File((String) arg1)); copy(inStream, outStream); } else if (arg1 instanceof File) { inStream = new FileInputStream((File) arg1); copy(inStream, outStream); } else if (arg1 instanceof URL) { copy(((URL) arg1).openStream(), outStream); } else if (arg1 instanceof InputStream) { copy((InputStream) arg1, outStream); } else if (arg1 instanceof RandomAccessFile) { copy((RandomAccessFile) arg1, outStream); } else { throw new TypeError("Invalid first argument to copy()"); } } else { throw new TypeError("Invalid second argument to copy()"); } } catch (IOException e) { throw new IOError(e.getMessage(), e); } } | 886,058 |
0 | public static void main(String[] args) { boolean rotateLeft = false; boolean rotateRight = false; boolean exclude = false; boolean reset = false; float quality = 0f; int thumbArea = 12000; for (int i = 0; i < args.length; i++) { if (args[i].equals("-rotl")) rotateLeft = true; else if (args[i].equals("-rotr")) rotateRight = true; else if (args[i].equals("-exclude")) exclude = true; else if (args[i].equals("-reset")) reset = true; else if (args[i].equals("-quality")) quality = Float.parseFloat(args[++i]); else if (args[i].equals("-area")) thumbArea = Integer.parseInt(args[++i]); else { File f = new File(args[i]); try { Tools t = new Tools(f); if (exclude) { URL url = t.getClass().getResource("exclude.jpg"); InputStream is = url.openStream(); File dest = t.getExcludeFile(); OutputStream os = new FileOutputStream(dest); byte[] buf = new byte[1024]; int len; while ((len = is.read(buf)) > 0) os.write(buf, 0, len); os.close(); is.close(); t.getOutFile().delete(); t.getThumbFile().delete(); System.exit(0); } if (reset) { t.getOutFile().delete(); t.getThumbFile().delete(); t.getExcludeFile().delete(); System.exit(0); } if (quality > 0) t.setQuality(quality); if (t.getType() == Tools.THUMB || t.getType() == Tools.EXCLUDE) t.load(t.getBaseFile()); else t.load(t.getSourceFile()); File out = t.getOutFile(); if (rotateLeft) t.rotateLeft(); else if (rotateRight) t.rotateRight(); t.save(out); t.getExcludeFile().delete(); t.getThumbFile().delete(); System.exit(0); } catch (Throwable e) { e.printStackTrace(); JOptionPane.showMessageDialog(null, "The operation could not be performed", "JPhotoAlbum", JOptionPane.ERROR_MESSAGE); System.exit(1); } } } } | private ExamModel(URL urlQuestions) throws IOException, DataCoherencyException { BufferedReader in = new BufferedReader(new InputStreamReader(urlQuestions.openStream())); String line; questions = new ArrayList<Question>(); questionsMap = new HashMap<String, Question>(); in = new BufferedReader(new InputStreamReader(urlQuestions.openStream(), "UTF-8")); int questionNumber = 0; Question question; String questText = ""; String hash = ""; int lookingFor = ExamModel.READING_HASH; while ((line = in.readLine()) != null) { switch(lookingFor) { case ExamModel.READING_HASH: if (line.length() == 0 || line.trim().length() == 0) continue; hash = line; questionNumber++; lookingFor = ExamModel.READING_QUESTION; break; case ExamModel.READING_QUESTION: if (line.equals("--")) { question = new Question(questionNumber, hash, questText); questions.add(question); questionsMap.put(question.getHash(), question); questText = ""; hash = null; lookingFor = ExamModel.READING_HASH; } else { questText = questText.concat(line + Constants.nl); } break; default: throw new DataCoherencyException("Neočekávaný konec souboru!"); } } questions.trimToSize(); in.close(); } | 886,059 |
0 | void bubbleSort(int[] a) { int i = 0; int j = a.length - 1; int aux = 0; int stop = 0; while (stop == 0) { stop = 1; i = 0; while (i < j) { if (a[i] > a[i + 1]) { aux = a[i]; a[i] = a[i + 1]; a[i + 1] = aux; stop = 0; } i = i + 1; } j = j - 1; } } | public boolean backupFile(File oldFile, File newFile) { boolean isBkupFileOK = false; FileChannel sourceChannel = null; FileChannel targetChannel = null; try { sourceChannel = new FileInputStream(oldFile).getChannel(); targetChannel = new FileOutputStream(newFile).getChannel(); targetChannel.transferFrom(sourceChannel, 0, sourceChannel.size()); } catch (IOException e) { logger.log(Level.SEVERE, "IO exception occurred while copying config file", e); } finally { if ((newFile != null) && (newFile.exists()) && (newFile.length() > 0)) { isBkupFileOK = true; } try { if (sourceChannel != null) { sourceChannel.close(); } if (targetChannel != null) { targetChannel.close(); } } catch (IOException e) { logger.log(Level.INFO, "closing channels failed"); } } return isBkupFileOK; } | 886,060 |
0 | private void refreshJOGL(final File installDir) { try { Class subAppletClass = Class.forName(subAppletClassName); } catch (ClassNotFoundException cnfe) { displayError("Start failed : class not found : " + subAppletClassName); } if (!installDir.exists()) { installDir.mkdirs(); } String libURLName = nativeLibsJarNames[osType]; URL nativeLibURL; URLConnection urlConnection; String path = getCodeBase().toExternalForm() + libURLName; try { nativeLibURL = new URL(path); urlConnection = nativeLibURL.openConnection(); } catch (Exception e) { e.printStackTrace(); displayError("Couldn't access the native lib URL : " + path); return; } long lastModified = urlConnection.getLastModified(); File localNativeFile = new File(installDir, nativeLibsFileNames[osType]); boolean needsRefresh = (!localNativeFile.exists()) || localNativeFile.lastModified() != lastModified; if (needsRefresh) { displayMessage("Updating local version of the native libraries"); File localJarFile = new File(installDir, nativeLibsJarNames[osType]); try { saveNativesJarLocally(localJarFile, urlConnection); } catch (IOException ioe) { ioe.printStackTrace(); displayError("Unable to install the native file locally"); return; } InputStream is = null; BufferedOutputStream out = null; try { JarFile jf = new JarFile(localJarFile); JarEntry nativeLibEntry = findNativeEntry(jf); if (nativeLibEntry == null) { displayError("native library not found in jar file"); } else { is = jf.getInputStream(nativeLibEntry); int totalLength = (int) nativeLibEntry.getSize(); try { out = new BufferedOutputStream(new FileOutputStream(localNativeFile)); } catch (FileNotFoundException ex) { ex.printStackTrace(); return; } byte[] buffer = new byte[1024]; int sum = 0; int len; try { while ((len = is.read(buffer)) > 0) { out.write(buffer, 0, len); sum += len; int percent = (100 * sum / totalLength); displayMessage("Installing native files"); progressBar.setValue(percent); } displayMessage("Download complete"); } catch (IOException ioe) { ioe.printStackTrace(); displayMessage("An error has occured during native library download"); return; } finally { if (out != null) { try { out.close(); } catch (IOException ignore) { } } } if (checkNativeCertificates(nativeLibEntry.getCertificates())) { localNativeFile.setLastModified(lastModified); loadNativesAndStart(localNativeFile); } else { displayError("The native librairies aren't properly signed"); } } } catch (IOException e) { e.printStackTrace(); } finally { if (is != null) { try { is.close(); } catch (IOException ignore) { } } } } else { loadNativesAndStart(localNativeFile); } } | public synchronized void readConfiguration() throws IOException, SecurityException { String path; InputStream inputStream; path = System.getProperty("java.util.logging.config.file"); if ((path == null) || (path.length() == 0)) { String url = (System.getProperty("gnu.classpath.home.url") + "/logging.properties"); inputStream = new URL(url).openStream(); } else inputStream = new java.io.FileInputStream(path); try { readConfiguration(inputStream); } finally { inputStream.close(); } } | 886,061 |
1 | public static void entering(String[] args) throws IOException, CodeCheckException { ClassWriter writer = new ClassWriter(); writer.readClass(new BufferedInputStream(new FileInputStream(args[0]))); int constantIndex = writer.getStringConstantIndex("Entering "); int fieldRefIndex = writer.getReferenceIndex(ClassWriter.CONSTANT_Fieldref, "java/lang/System", "out", "Ljava/io/PrintStream;"); int printlnRefIndex = writer.getReferenceIndex(ClassWriter.CONSTANT_Methodref, "java/io/PrintStream", "println", "(Ljava/lang/String;)V"); int printRefIndex = writer.getReferenceIndex(ClassWriter.CONSTANT_Methodref, "java/io/PrintStream", "print", "(Ljava/lang/String;)V"); for (Iterator i = writer.getMethods().iterator(); i.hasNext(); ) { MethodInfo method = (MethodInfo) i.next(); if (method.getName().equals("readConstant")) continue; CodeAttribute attribute = method.getCodeAttribute(); ArrayList instructions = new ArrayList(10); byte[] operands; operands = new byte[2]; NetByte.intToPair(fieldRefIndex, operands, 0); instructions.add(new Instruction(OpCode.getOpCodeByMnemonic("getstatic"), 0, operands, false)); instructions.add(new Instruction(OpCode.getOpCodeByMnemonic("dup"), 0, null, false)); instructions.add(Instruction.appropriateLdc(constantIndex, false)); operands = new byte[2]; NetByte.intToPair(printRefIndex, operands, 0); instructions.add(new Instruction(OpCode.getOpCodeByMnemonic("invokevirtual"), 0, operands, false)); instructions.add(Instruction.appropriateLdc(writer.getStringConstantIndex(method.getName()), false)); operands = new byte[2]; NetByte.intToPair(printlnRefIndex, operands, 0); instructions.add(new Instruction(OpCode.getOpCodeByMnemonic("invokevirtual"), 0, operands, false)); attribute.insertInstructions(0, 0, instructions); attribute.codeCheck(); } BufferedOutputStream outStream = new BufferedOutputStream(new FileOutputStream(args[1])); writer.writeClass(outStream); outStream.close(); } | public static void compress(final File zip, final Map<InputStream, String> entries, final IProgressMonitor monitor) throws IOException { if (zip == null || entries == null || CollectionUtils.isEmpty(entries.keySet())) throw new IllegalArgumentException("One ore more parameters are empty!"); if (zip.exists()) zip.delete(); else if (!zip.getParentFile().exists()) zip.getParentFile().mkdirs(); ZipOutputStream out = new ZipOutputStream(new BufferedOutputStream(new FileOutputStream(zip))); out.setLevel(Deflater.BEST_COMPRESSION); try { for (InputStream inputStream : entries.keySet()) { ZipEntry zipEntry = new ZipEntry(skipBeginningSlash(entries.get(inputStream))); out.putNextEntry(zipEntry); IOUtils.copy(inputStream, out); out.closeEntry(); inputStream.close(); if (monitor != null) monitor.worked(1); } } finally { IOUtils.closeQuietly(out); } } | 886,062 |
1 | private Face(String font) throws IOException { characterWidths = new double[256]; StringBuffer sb = new StringBuffer(); sb.append('/'); sb.append(Constants.FONTS_DIR); sb.append('/'); sb.append(font); sb.append(Constants.CHAR_WIDTHS_SUFFIX); String path = sb.toString(); URL url = getClass().getResource(path); InputStream is = url.openStream(); BufferedReader br = new BufferedReader(new InputStreamReader(is)); int pos = 0; String width = br.readLine(); while (width != null && pos < 256) { characterWidths[pos] = Double.parseDouble(width); pos++; width = br.readLine(); } } | public String htmlContentSimple(String urlStr, String charset) { StringBuffer html = new StringBuffer(); URL url = null; BufferedReader reader = null; try { url = new URL(urlStr); reader = new BufferedReader(new InputStreamReader(url.openStream(), charset)); String line; while ((line = reader.readLine()) != null) { html.append(line).append("\r\n"); } } catch (MalformedURLException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } finally { if (reader != null) try { reader.close(); } catch (IOException e) { e.printStackTrace(); } } return html.toString(); } | 886,063 |
1 | public void copyDependancyFiles() { for (String[] depStrings : getDependancyFiles()) { String source = depStrings[0]; String target = depStrings[1]; try { File sourceFile = PluginManager.getFile(source); IOUtils.copyEverything(sourceFile, new File(WEB_ROOT + target)); } catch (URISyntaxException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } } } | public static void copyFile(File src, File dst) throws IOException { File inputFile = src; File outputFile = dst; FileReader in = new FileReader(inputFile); FileWriter out = new FileWriter(outputFile); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); } | 886,064 |
1 | public String upload() throws IOException { int idx = docIndex.incrementAndGet(); String tmpName = "namefinder/doc_" + idx + "__" + fileFileName; File tmpFile = tmpFile(tmpName); if (tmpFile.exists()) { org.apache.commons.io.FileUtils.deleteQuietly(tmpFile); } org.apache.commons.io.FileUtils.touch(tmpFile); InputStream fileStream = new FileInputStream(file); OutputStream bos = new FileOutputStream(tmpFile); IOUtils.copy(fileStream, bos); bos.close(); fileStream.close(); return tmpUrl(tmpName); } | public void reqservmodif(HttpServletRequest req, HttpServletResponse resp, SessionCommand command) { try { System.err.println(req.getSession().getServletContext().getRealPath("WEB-INF/syncWork")); File tempFile = File.createTempFile("localmodif-", ".medoorequest"); OutputStream fos = new FileOutputStream(tempFile); syncServer.getServerModifications(command.getSession(), fos); InputStream fis = new FileInputStream(tempFile); resp.setContentLength(fis.available()); while (fis.available() > 0) { resp.getOutputStream().write(fis.read()); } resp.getOutputStream().flush(); resp.flushBuffer(); tempFile.delete(); } catch (IOException ioe) { logger.error(ioe.getMessage()); } catch (ImogSerializationException ex) { logger.error(ex.getMessage()); } } | 886,065 |
1 | private void weightAndPlaceClasses() { int rows = getRows(); for (int curRow = _maxPackageRank; curRow < rows; curRow++) { xPos = getHGap() / 2; BOTLRuleDiagramNode[] rowObject = getObjectsInRow(curRow); for (int i = 0; i < rowObject.length; i++) { if (curRow == _maxPackageRank) { int nDownlinks = rowObject[i].getDownlinks().size(); rowObject[i].setWeight((nDownlinks > 0) ? (1 / nDownlinks) : 2); } else { Vector uplinks = rowObject[i].getUplinks(); int nUplinks = uplinks.size(); if (nUplinks > 0) { float average_col = 0; for (int j = 0; j < uplinks.size(); j++) { average_col += ((BOTLRuleDiagramNode) (uplinks.elementAt(j))).getColumn(); } average_col /= nUplinks; rowObject[i].setWeight(average_col); } else { rowObject[i].setWeight(1000); } } } int[] pos = new int[rowObject.length]; for (int i = 0; i < pos.length; i++) { pos[i] = i; } boolean swapped = true; while (swapped) { swapped = false; for (int i = 0; i < pos.length - 1; i++) { if (rowObject[pos[i]].getWeight() > rowObject[pos[i + 1]].getWeight()) { int temp = pos[i]; pos[i] = pos[i + 1]; pos[i + 1] = temp; swapped = true; } } } for (int i = 0; i < pos.length; i++) { rowObject[pos[i]].setColumn(i); if ((i > _vMax) && (rowObject[pos[i]].getUplinks().size() == 0) && (rowObject[pos[i]].getDownlinks().size() == 0)) { if (getColumns(rows - 1) > _vMax) { rows++; } rowObject[pos[i]].setRank(rows - 1); } else { rowObject[pos[i]].setLocation(new Point(xPos, yPos)); xPos += rowObject[pos[i]].getSize().getWidth() + getHGap(); } } yPos += getRowHeight(curRow) + getVGap(); } } | public void sort(int[] order, double[] values) { int temp = 0; boolean done = false; for (int i = 0; i < values.length; i++) { order[i] = i; } if (desendingValues) { while (!done) { done = true; for (int i = values.length - 2; i >= 0; i--) { if (values[order[i]] < values[order[i + 1]]) { done = false; temp = order[i]; order[i] = order[i + 1]; order[i + 1] = temp; } } } } else { while (!done) { done = true; for (int i = values.length - 2; i >= 0; i--) { if (values[order[i]] > values[order[i + 1]]) { done = false; temp = order[i]; order[i] = order[i + 1]; order[i + 1] = temp; } } } } } | 886,066 |
0 | private void duplicateIndices(Connection scon, Connection dcon, String table) { try { String idx_name, idx_att, query; ResultSet idxs = scon.getMetaData().getIndexInfo(null, null, table, false, false); Statement stmt = dcon.createStatement(); while (idxs.next()) { idx_name = idxs.getString(6); idx_att = idxs.getString(9); idx_name += "_" + idx_att + "_idx"; logger.debug("Creating index " + idx_name); query = "CREATE INDEX " + idx_name + " ON " + table + "(" + idx_att + ")"; stmt.executeUpdate(query); dcon.commit(); } } catch (Exception e) { logger.error("Unable to copy indices " + e); try { dcon.rollback(); } catch (SQLException e1) { logger.fatal(e1); } } } | public void schema(final Row row, TestResults testResults) throws Exception { String urlString = row.text(1); String schemaBase = null; if (row.cellExists(2)) { schemaBase = row.text(2); } try { StreamSource schemaSource; if (urlString.startsWith(CLASS_PREFIX)) { InputStream schema = XmlValidator.class.getClassLoader().getResourceAsStream(urlString.substring(CLASS_PREFIX.length())); schemaSource = new StreamSource(schema); } else { URL url = new URL(urlString); URLConnection urlConnection = url.openConnection(); urlConnection.connect(); InputStream inputStream = urlConnection.getInputStream(); schemaSource = new StreamSource(inputStream); } SchemaFactory factory = SchemaFactory.newInstance(XMLConstants.W3C_XML_SCHEMA_NS_URI); if (schemaBase != null) { DefaultLSResourceResolver resolver = new DefaultLSResourceResolver(schemaBase); factory.setResourceResolver(resolver); } factory.newSchema(new URL(urlString)); Validator validator = factory.newSchema(schemaSource).newValidator(); StreamSource source = new StreamSource(new StringReader(xml)); validator.validate(source); row.pass(testResults); } catch (SAXException e) { Loggers.SERVICE_LOG.warn("schema error", e); throw new FitFailureException(e.getMessage()); } catch (IOException e) { Loggers.SERVICE_LOG.warn("schema error", e); throw new FitFailureException(e.getMessage()); } } | 886,067 |
1 | public static Collection providers(Class service, ClassLoader loader) { List classList = new ArrayList(); List nameSet = new ArrayList(); String name = "META-INF/services/" + service.getName(); Enumeration services; try { services = (loader == null) ? ClassLoader.getSystemResources(name) : loader.getResources(name); } catch (IOException ioe) { System.err.println("Service: cannot load " + name); return classList; } while (services.hasMoreElements()) { URL url = (URL) services.nextElement(); InputStream input = null; BufferedReader reader = null; try { input = url.openStream(); reader = new BufferedReader(new InputStreamReader(input, "utf-8")); String line = reader.readLine(); while (line != null) { int ci = line.indexOf('#'); if (ci >= 0) line = line.substring(0, ci); line = line.trim(); int si = line.indexOf(' '); if (si >= 0) line = line.substring(0, si); line = line.trim(); if (line.length() > 0) { if (!nameSet.contains(line)) nameSet.add(line); } line = reader.readLine(); } } catch (IOException ioe) { System.err.println("Service: problem with: " + url); } finally { try { if (input != null) input.close(); if (reader != null) reader.close(); } catch (IOException ioe2) { System.err.println("Service: problem with: " + url); } } } Iterator names = nameSet.iterator(); while (names.hasNext()) { String className = (String) names.next(); try { classList.add(Class.forName(className, true, loader).newInstance()); } catch (ClassNotFoundException e) { System.err.println("Service: cannot find class: " + className); } catch (InstantiationException e) { System.err.println("Service: cannot instantiate: " + className); } catch (IllegalAccessException e) { System.err.println("Service: illegal access to: " + className); } catch (NoClassDefFoundError e) { System.err.println("Service: " + e + " for " + className); } catch (Exception e) { System.err.println("Service: exception for: " + className + " " + e); } } return classList; } | public static ISimpleChemObjectReader createReader(URL url, String urlString, String type) throws CDKException { if (type == null) { type = "mol"; } ISimpleChemObjectReader cor = null; try { Reader input = new BufferedReader(getReader(url)); FormatFactory formatFactory = new FormatFactory(8192); IChemFormat format = formatFactory.guessFormat(input); if (format != null) { if (format instanceof RGroupQueryFormat) { cor = new RGroupQueryReader(); cor.setReader(input); } else if (format instanceof CMLFormat) { cor = new CMLReader(urlString); cor.setReader(url.openStream()); } else if (format instanceof MDLV2000Format) { cor = new MDLV2000Reader(getReader(url)); cor.setReader(input); } } } catch (Exception exc) { exc.printStackTrace(); } if (cor == null) { if (type.equals(JCPFileFilter.cml) || type.equals(JCPFileFilter.xml)) { cor = new CMLReader(urlString); } else if (type.equals(JCPFileFilter.sdf)) { cor = new MDLV2000Reader(getReader(url)); } else if (type.equals(JCPFileFilter.mol)) { cor = new MDLV2000Reader(getReader(url)); } else if (type.equals(JCPFileFilter.inchi)) { try { cor = new INChIReader(new URL(urlString).openStream()); } catch (Exception e) { e.printStackTrace(); } } else if (type.equals(JCPFileFilter.rxn)) { cor = new MDLRXNV2000Reader(getReader(url)); } else if (type.equals(JCPFileFilter.smi)) { cor = new SMILESReader(getReader(url)); } } if (cor == null) { throw new CDKException(GT._("Could not determine file format")); } if (cor instanceof MDLV2000Reader) { try { BufferedReader in = new BufferedReader(getReader(url)); String line; while ((line = in.readLine()) != null) { if (line.equals("$$$$")) { String message = GT._("It seems you opened a mol or sdf" + " file containing several molecules. " + "Only the first one will be shown"); JOptionPane.showMessageDialog(null, message, GT._("sdf-like file"), JOptionPane.INFORMATION_MESSAGE); break; } } } catch (IOException ex) { ex.printStackTrace(); } } return cor; } | 886,068 |
0 | public static String md5(String plain) { MessageDigest md5 = null; try { md5 = MessageDigest.getInstance("MD5"); } catch (Exception e) { PApplet.println("[ERROR]: md5() " + e); return ""; } md5.reset(); md5.update(plain.getBytes()); byte[] result = md5.digest(); StringBuffer hexString = new StringBuffer(); for (int i = 0; i < result.length; i += 1) { hexString.append(Integer.toHexString(0xFF & result[i])); } return hexString.toString(); } | public int delete(BusinessObject o) throws DAOException { int delete = 0; Item item = (Item) o; try { PreparedStatement pst = connection.prepareStatement(XMLGetQuery.getQuery("DELETE_ITEM")); pst.setInt(1, item.getId()); delete = pst.executeUpdate(); if (delete <= 0) { connection.rollback(); throw new DAOException("Number of rows <= 0"); } else if (delete > 1) { connection.rollback(); throw new DAOException("Number of rows > 1"); } connection.commit(); } catch (SQLException e) { Log.write(e.getMessage()); throw new DAOException("A SQLException has occured"); } catch (NullPointerException npe) { Log.write(npe.getMessage()); throw new DAOException("Connection null"); } return delete; } | 886,069 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | 886,070 |
0 | public void doGet(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException { HttpSession session = request.getSession(false); if (session == null) { log.warn("HttpProxyServlet: no session"); response.setStatus(404); return; } User user = (User) session.getAttribute("user"); if (user == null) { log.warn("HttpProxyServlet: user not logged in"); response.setStatus(404); return; } String target = null; if (request.getPathInfo() != null && !request.getPathInfo().equals("")) { target = "http:/" + request.getPathInfo() + "?" + request.getQueryString(); log.info("HttpProxyServlet: target=" + target); } else { log.warn("HttpProxyServlet: missing pathInfo"); response.setStatus(404); return; } InputStream is = null; ServletOutputStream out = null; try { URL url = new URL(target); URLConnection uc = url.openConnection(); response.setContentType(uc.getContentType()); is = uc.getInputStream(); out = response.getOutputStream(); byte[] buf = new byte[4096]; int bytesRead; while ((bytesRead = is.read(buf)) != -1) { out.write(buf, 0, bytesRead); } } catch (MalformedURLException e) { log.warn("HttpProxyServlet: malformed URL"); response.setStatus(404); } catch (IOException e) { log.warn("HttpProxyServlet: I/O exception"); response.setStatus(404); } finally { if (is != null) { is.close(); } if (out != null) { out.close(); } } } | public static void main(String[] args) { LogFrame.getInstance(); for (int i = 0; i < args.length; i++) { String arg = args[i]; if (arg.trim().startsWith(DEBUG_PARAMETER_NAME + "=")) { properties.put(DEBUG_PARAMETER_NAME, arg.trim().substring(DEBUG_PARAMETER_NAME.length() + 1).trim()); if (properties.getProperty(DEBUG_PARAMETER_NAME).toLowerCase().equals(DEBUG_TRUE)) { DEBUG = true; } } else if (arg.trim().startsWith(AUTOCONNECT_PARAMETER_NAME + "=")) { properties.put(AUTOCONNECT_PARAMETER_NAME, arg.trim().substring(AUTOCONNECT_PARAMETER_NAME.length() + 1).trim()); } else if (arg.trim().startsWith(SITE_CONFIG_URL_PARAMETER_NAME + "=")) { properties.put(SITE_CONFIG_URL_PARAMETER_NAME, arg.trim().substring(SITE_CONFIG_URL_PARAMETER_NAME.length() + 1).trim()); } else if (arg.trim().startsWith(LOAD_PLUGINS_PARAMETER_NAME + "=")) { properties.put(LOAD_PLUGINS_PARAMETER_NAME, arg.trim().substring(LOAD_PLUGINS_PARAMETER_NAME.length() + 1).trim()); } else if (arg.trim().startsWith(DOCSERVICE_URL_PARAMETER_NAME + "=")) { properties.put(DOCSERVICE_URL_PARAMETER_NAME, arg.trim().substring(DOCSERVICE_URL_PARAMETER_NAME.length() + 1).trim()); } else if (arg.trim().startsWith(CORPUS_ID_PARAMETER_NAME + "=")) { properties.put(CORPUS_ID_PARAMETER_NAME, arg.trim().substring(CORPUS_ID_PARAMETER_NAME.length() + 1).trim()); } else { System.out.println("WARNING! Unknown or undefined parameter: '" + arg.trim() + "'"); } } System.out.println("Annic GUI startup parameters:"); System.out.println("------------------------------"); for (Object propName : properties.keySet()) { System.out.println(propName.toString() + "=" + properties.getProperty((String) propName)); } System.out.println("------------------------------"); if (properties.getProperty(SITE_CONFIG_URL_PARAMETER_NAME) == null || properties.getProperty(SITE_CONFIG_URL_PARAMETER_NAME).length() == 0) { String err = "Mandatory parameter '" + SITE_CONFIG_URL_PARAMETER_NAME + "' is missing.\n\nApplication will exit."; System.out.println(err); JOptionPane.showMessageDialog(new JFrame(), err, "Error!", JOptionPane.ERROR_MESSAGE); System.exit(-1); } try { String context = System.getProperty(CONTEXT); if (context == null || "".equals(context)) { context = DEFAULT_CONTEXT; } String s = System.getProperty(GateConstants.GATE_HOME_PROPERTY_NAME); if (s == null || s.length() == 0) { File f = File.createTempFile("foo", ""); String gateHome = f.getParent().toString() + context; f.delete(); System.setProperty(GateConstants.GATE_HOME_PROPERTY_NAME, gateHome); f = new File(System.getProperty(GateConstants.GATE_HOME_PROPERTY_NAME)); if (!f.exists()) { f.mkdirs(); } } s = System.getProperty(GateConstants.PLUGINS_HOME_PROPERTY_NAME); if (s == null || s.length() == 0) { System.setProperty(GateConstants.PLUGINS_HOME_PROPERTY_NAME, System.getProperty(GateConstants.GATE_HOME_PROPERTY_NAME) + "/plugins"); File f = new File(System.getProperty(GateConstants.PLUGINS_HOME_PROPERTY_NAME)); if (!f.exists()) { f.mkdirs(); } } s = System.getProperty(GateConstants.GATE_SITE_CONFIG_PROPERTY_NAME); if (s == null || s.length() == 0) { System.setProperty(GateConstants.GATE_SITE_CONFIG_PROPERTY_NAME, System.getProperty(GateConstants.GATE_HOME_PROPERTY_NAME) + "/gate.xml"); } if (properties.getProperty(SITE_CONFIG_URL_PARAMETER_NAME) != null && properties.getProperty(SITE_CONFIG_URL_PARAMETER_NAME).length() > 0) { File f = new File(System.getProperty(GateConstants.GATE_SITE_CONFIG_PROPERTY_NAME)); if (f.exists()) { f.delete(); } f.getParentFile().mkdirs(); f.createNewFile(); URL url = new URL(properties.getProperty(SITE_CONFIG_URL_PARAMETER_NAME)); InputStream is = url.openStream(); FileOutputStream fos = new FileOutputStream(f); int i = is.read(); while (i != -1) { fos.write(i); i = is.read(); } fos.close(); is.close(); } try { Gate.init(); gate.Main.applyUserPreferences(); } catch (Exception e) { e.printStackTrace(); } s = BASE_PLUGIN_NAME + "," + properties.getProperty(LOAD_PLUGINS_PARAMETER_NAME); System.out.println("Loading plugins: " + s); loadPlugins(s, true); } catch (Throwable e) { e.printStackTrace(); } MainFrame.getInstance().setVisible(true); MainFrame.getInstance().pack(); if (properties.getProperty(AUTOCONNECT_PARAMETER_NAME, "").toLowerCase().equals(AUTOCONNECT_TRUE)) { if (properties.getProperty(CORPUS_ID_PARAMETER_NAME) == null || properties.getProperty(CORPUS_ID_PARAMETER_NAME).length() == 0) { String err = "Can't autoconnect. A parameter '" + CORPUS_ID_PARAMETER_NAME + "' is missing."; System.out.println(err); JOptionPane.showMessageDialog(MainFrame.getInstance(), err, "Error!", JOptionPane.ERROR_MESSAGE); ActionShowAnnicConnectDialog.getInstance().actionPerformed(null); } else { ActionConnectToAnnicGUI.getInstance().actionPerformed(null); } } else { ActionShowAnnicConnectDialog.getInstance().actionPerformed(null); } } | 886,071 |
0 | public void doGet(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException { response.setContentType(CONTENT_TYPE); URL url; URLConnection urlConn; DataOutputStream cgiInput; url = new URL("http://localhost:8080/ListeOnLine/Target"); urlConn = url.openConnection(); urlConn.setDoInput(true); urlConn.setDoOutput(true); urlConn.setUseCaches(false); urlConn.setRequestProperty("Content-Type", "application/x-www-form-urlencoded"); cgiInput = new DataOutputStream(urlConn.getOutputStream()); String content = "param1=" + URLEncoder.encode("first parameter") + "¶m2=" + URLEncoder.encode("the second one..."); cgiInput.writeBytes(content); cgiInput.flush(); cgiInput.close(); BufferedReader cgiOutput = new BufferedReader(new InputStreamReader(urlConn.getInputStream())); PrintWriter servletOutput = response.getWriter(); servletOutput.print("<html><body><h1>This is the Source Servlet</h1><p />"); String line = null; while (null != (line = cgiOutput.readLine())) { servletOutput.println(line); } cgiOutput.close(); servletOutput.print("</body></html>"); servletOutput.close(); } | public void copy(String fromFileName, String toFileName) throws IOException { log.info("copy() file:" + fromFileName + " toFile:" + toFileName); File fromFile = new File(fromFileName); File toFile = new File(toFileName); if (!fromFile.exists()) throw new IOException("FileCopy: " + "no such source file: " + fromFileName); if (!fromFile.isFile()) throw new IOException("FileCopy: " + "can't copy directory: " + fromFileName); if (!fromFile.canRead()) throw new IOException("FileCopy: " + "source file is unreadable: " + fromFileName); if (toFile.isDirectory()) toFile = new File(toFile, fromFile.getName()); if (toFile.exists()) { if (!toFile.canWrite()) throw new IOException("FileCopy: " + "destination file is unwriteable: " + toFileName); } else { String parent = toFile.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) throw new IOException("FileCopy: " + "destination directory doesn't exist: " + parent); if (dir.isFile()) throw new IOException("FileCopy: " + "destination is not a directory: " + parent); if (!dir.canWrite()) throw new IOException("FileCopy: " + "destination directory is unwriteable: " + parent); } FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(fromFile); to = new FileOutputStream(toFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead); } finally { if (from != null) try { from.close(); } catch (IOException e) { log.error(e.getMessage()); } if (to != null) try { to.close(); } catch (IOException e) { log.error(e.getMessage()); } } } | 886,072 |
1 | public static String getMD5HashFromString(String message) { String hashword = null; try { MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(message.getBytes()); BigInteger hash = new BigInteger(1, md5.digest()); hashword = hash.toString(16); } catch (NoSuchAlgorithmException nsae) { } return hashword; } | public static boolean matchPassword(String prevPassStr, String newPassword) throws NoSuchAlgorithmException, java.io.IOException, java.io.UnsupportedEncodingException { MessageDigest md = MessageDigest.getInstance("MD5"); byte[] seed = new byte[12]; byte[] prevPass = new sun.misc.BASE64Decoder().decodeBuffer(prevPassStr); System.arraycopy(prevPass, 0, seed, 0, 12); md.update(seed); md.update(newPassword.getBytes("UTF8")); byte[] digestNewPassword = md.digest(); byte[] choppedPrevPassword = new byte[prevPass.length - 12]; System.arraycopy(prevPass, 12, choppedPrevPassword, 0, prevPass.length - 12); boolean isMatching = Arrays.equals(digestNewPassword, choppedPrevPassword); return isMatching; } | 886,073 |
1 | public static void main(String[] args) throws Exception { TripleDES tdes = new TripleDES(); StreamBlockReader reader = new StreamBlockReader(new FileInputStream("D:\\testTDESENC.txt")); StreamBlockWriter writer = new StreamBlockWriter(new FileOutputStream("D:\\testTDESDEC.txt")); SingleKey key = new SingleKey(new Block(128), ""); key = new SingleKey(new Block("01011101110000101001100111001011101000001110111101001001101101101101100000011101100100110000101100001110000001111101001101001101"), ""); Mode mode = new ECBTripleDESMode(tdes); tdes.decrypt(reader, writer, key, mode); } | public static long writePropertiesInOpenXMLDocument(String ext, InputStream in, OutputStreamProvider outProvider, Map<String, String> properties) { in = new BufferedInputStream(in); try { File tempPptx = null; POIXMLDocument doc; if (ext.toLowerCase().equals("docx")) { doc = new XWPFDocument(in); } else if (ext.toLowerCase().equals("xlsx")) { doc = new XSSFWorkbook(in); } else if (ext.toLowerCase().equals("pptx")) { tempPptx = File.createTempFile("temp", "pptx"); OutputStream tempPptxOut = new FileOutputStream(tempPptx); tempPptxOut = new BufferedOutputStream(tempPptxOut); IOUtils.copy(in, tempPptxOut); tempPptxOut.close(); doc = new XSLFSlideShow(tempPptx.getAbsolutePath()); } else { throw new IllegalArgumentException("Writing properties for a " + ext + " file is not supported"); } for (Map.Entry<String, String> property : properties.entrySet()) { CoreProperties coreProperties = doc.getProperties().getCoreProperties(); if (property.getKey().equals(Metadata.TITLE)) { coreProperties.setTitle(property.getValue()); } else if (property.getKey().equals(Metadata.AUTHOR)) { coreProperties.setCreator(property.getValue()); } else if (property.getKey().equals(Metadata.KEYWORDS)) { coreProperties.getUnderlyingProperties().setKeywordsProperty(property.getValue()); } else if (property.getKey().equals(Metadata.COMMENTS)) { coreProperties.setDescription(property.getValue()); } else if (property.getKey().equals(Metadata.SUBJECT)) { coreProperties.setSubjectProperty(property.getValue()); } else if (property.getKey().equals(Metadata.COMPANY)) { doc.getProperties().getExtendedProperties().getUnderlyingProperties().setCompany(property.getValue()); } else { org.apache.poi.POIXMLProperties.CustomProperties customProperties = doc.getProperties().getCustomProperties(); if (customProperties.contains(property.getKey())) { int index = 0; for (CTProperty prop : customProperties.getUnderlyingProperties().getPropertyArray()) { if (prop.getName().equals(property.getKey())) { customProperties.getUnderlyingProperties().removeProperty(index); break; } index++; } } customProperties.addProperty(property.getKey(), property.getValue()); } } in.close(); File tempOpenXMLDocumentFile = File.createTempFile("temp", "tmp"); OutputStream tempOpenXMLDocumentOut = new FileOutputStream(tempOpenXMLDocumentFile); tempOpenXMLDocumentOut = new BufferedOutputStream(tempOpenXMLDocumentOut); doc.write(tempOpenXMLDocumentOut); tempOpenXMLDocumentOut.close(); long length = tempOpenXMLDocumentFile.length(); InputStream tempOpenXMLDocumentIn = new FileInputStream(tempOpenXMLDocumentFile); tempOpenXMLDocumentIn = new BufferedInputStream(tempOpenXMLDocumentIn); OutputStream out = null; try { out = outProvider.getOutputStream(); out = new BufferedOutputStream(out); IOUtils.copy(tempOpenXMLDocumentIn, out); out.flush(); } finally { IOUtils.closeQuietly(out); } if (!FileUtils.deleteQuietly(tempOpenXMLDocumentFile)) { tempOpenXMLDocumentFile.deleteOnExit(); } if (tempPptx != null && !FileUtils.deleteQuietly(tempPptx)) { tempPptx.deleteOnExit(); } return length; } catch (IOException e) { throw new RuntimeException(e); } catch (InvalidFormatException e) { throw new RuntimeException(e); } catch (OpenXML4JException e) { throw new RuntimeException(e); } catch (XmlException e) { throw new RuntimeException(e); } finally { IOUtils.closeQuietly(in); } } | 886,074 |
1 | public static boolean copyfile(String file0, String file1) { try { File f0 = new File(file0); File f1 = new File(file1); FileInputStream in = new FileInputStream(f0); FileOutputStream out = new FileOutputStream(f1); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); in = null; out = null; return true; } catch (Exception e) { return false; } } | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 886,075 |
0 | protected URLConnection openConnection(URL url) throws IOException { URLStreamHandler handler = factory.findAuthorizedURLStreamHandler(protocol); if (handler != null) { try { return (URLConnection) openConnectionMethod.invoke(handler, new Object[] { url }); } catch (Exception e) { factory.adaptor.getFrameworkLog().log(new FrameworkLogEntry(MultiplexingURLStreamHandler.class.getName(), "openConnection", FrameworkLogEntry.ERROR, e, null)); throw new RuntimeException(e.getMessage()); } } throw new MalformedURLException(); } | public byte[] loadResource(String location) throws IOException { if ((location == null) || (location.length() == 0)) { throw new IOException("The given resource location must not be null and non empty."); } URL url = buildURL(location); URLConnection cxn = url.openConnection(); InputStream is = null; try { byte[] byteBuffer = new byte[2048]; ByteArrayOutputStream bos = new ByteArrayOutputStream(2048); is = cxn.getInputStream(); int bytesRead = 0; while ((bytesRead = is.read(byteBuffer, 0, 2048)) >= 0) { bos.write(byteBuffer, 0, bytesRead); } return bos.toByteArray(); } finally { if (is != null) { is.close(); } } } | 886,076 |
1 | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 886,077 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 886,078 |
0 | public Reader getReader() throws Exception { if (url_base == null) { return new FileReader(file); } else { URL url = new URL(url_base + file.getName()); return new InputStreamReader(url.openConnection().getInputStream()); } } | @Override protected void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException { if (doAuth(request, response)) { Connection conn = null; try { int UID = icsm.getIntChatSession(request).getUID(); conn = getJDBCConnection(icsm.getHeavyDatabaseConnectionPool(), request, response, HttpServletResponse.SC_SERVICE_UNAVAILABLE); if (conn == null) return; ResultSet rs = IntChatDatabaseOperations.executeQuery(conn, "SELECT id FROM ic_messagetypes WHERE templatename='" + IntChatConstants.MessageTemplates.IC_FILES + "' LIMIT 1"); if (rs.next()) { int fileTypeID = rs.getInt("id"); String recipients = request.getHeader(IntChatConstants.HEADER_FILERECIPIENTS); rs.getStatement().close(); rs = null; if (recipients != null) { HashMap<String, String> hm = Tools.parseMultiparamLine(request.getHeader("Content-Disposition")); String fileName = URLDecoder.decode(hm.get("filename"), IntChatServerDefaults.ENCODING); long fileLength = (request.getHeader("Content-Length") != null ? Long.parseLong(request.getHeader("Content-Length")) : -1); fileLength = (request.getHeader(IntChatConstants.HEADER_FILELENGTH) != null ? Long.parseLong(request.getHeader(IntChatConstants.HEADER_FILELENGTH)) : fileLength); long maxFileSize = RuntimeParameters.getIntValue(ParameterNames.MAX_FILE_SIZE) * 1048576; if (maxFileSize > 0 && fileLength > maxFileSize) { request.getInputStream().close(); response.sendError(HttpServletResponse.SC_REQUEST_ENTITY_TOO_LARGE); return; } long now = System.currentTimeMillis(); long nextid = ic_messages_id_seq.nextval(); IntChatServletInputStream in = new IntChatServletInputStream(request); IntChatMessage icm = null; conn.setAutoCommit(false); try { PreparedStatement ps = conn.prepareStatement("INSERT INTO ic_messages (id, tid, mhead, mbody, mdate, sid) VALUES (?, ?, ?, ?, ?, ?)"); ps.setLong(1, nextid); ps.setInt(2, fileTypeID); ps.setString(3, fileName); ps.setString(4, Long.toString(fileLength)); ps.setLong(5, now); ps.setInt(6, UID); ps.executeUpdate(); ps.close(); if (!insertBLOB(conn, in, fileLength, nextid, maxFileSize)) { conn.rollback(); return; } icm = new IntChatMessage(false, fileTypeID, null, null); String[] id = recipients.split(","); int id1; for (int i = 0; i < id.length; i++) { id1 = Integer.parseInt(id[i].trim()); IntChatDatabaseOperations.executeUpdate(conn, "INSERT INTO ic_recipients (mid, rid) VALUES ('" + nextid + "', '" + id1 + "')"); icm.addTo(id1); } conn.commit(); } catch (Exception e) { conn.rollback(); throw e; } finally { conn.setAutoCommit(true); } if (icm != null) { icm.setID(nextid); icm.setDate(new Timestamp(now - TimeZone.getDefault().getOffset(now))); icm.setFrom(UID); icm.setHeadText(fileName); icm.setBodyText(Long.toString(fileLength)); icsm.onClientSentMessage(icm); } response.setStatus(HttpServletResponse.SC_OK); } else { response.setStatus(HttpServletResponse.SC_BAD_REQUEST); } } else { response.setStatus(HttpServletResponse.SC_NOT_FOUND); } if (rs != null) { rs.getStatement().close(); rs = null; } } catch (RetryRequest rr) { throw rr; } catch (Exception e) { Tools.makeErrorResponse(request, response, HttpServletResponse.SC_INTERNAL_SERVER_ERROR, e); } finally { try { if (conn != null) icsm.getHeavyDatabaseConnectionPool().releaseConnection(conn); } catch (Exception e) { } } } } | 886,079 |
1 | @Override public String compute_hash(String plaintext) { MessageDigest d; try { d = MessageDigest.getInstance(get_algorithm_name()); d.update(plaintext.getBytes()); byte[] hash = d.digest(); StringBuffer sb = new StringBuffer(); for (byte b : hash) sb.append(String.format("%02x", b)); return sb.toString(); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } return null; } | public static String getETag(final String uri, final long lastModified) { try { final MessageDigest dg = MessageDigest.getInstance("MD5"); dg.update(uri.getBytes("utf-8")); dg.update(new byte[] { (byte) ((lastModified >> 24) & 0xFF), (byte) ((lastModified >> 16) & 0xFF), (byte) ((lastModified >> 8) & 0xFF), (byte) (lastModified & 0xFF) }); return CBASE64Codec.encode(dg.digest()); } catch (final Exception ignore) { return uri + lastModified; } } | 886,080 |
0 | private static ImageIcon tryLoadImageIconFromResource(String filename, String path, int width, int height) { ImageIcon icon = null; try { URL url = cl.getResource(path + pathSeparator + fixFilename(filename)); if (url != null && url.openStream() != null) { icon = new ImageIcon(url); } } catch (Exception e) { } if (icon == null) { return null; } if ((icon.getIconWidth() == width) && (icon.getIconHeight() == height)) { return icon; } else { return new ImageIcon(icon.getImage().getScaledInstance(width, height, java.awt.Image.SCALE_SMOOTH)); } } | public String readFile(String filename) throws UnsupportedEncodingException, FileNotFoundException, IOException { File f = new File(baseDir); f = new File(f, filename); StringWriter w = new StringWriter(); Reader fr = new InputStreamReader(new FileInputStream(f), "UTF-8"); IOUtils.copy(fr, w); fr.close(); w.close(); String contents = w.toString(); return contents; } | 886,081 |
1 | public void create(File target) { if ("dir".equals(type)) { File dir = new File(target, name); dir.mkdirs(); for (Resource c : children) { c.create(dir); } } else if ("package".equals(type)) { String[] dirs = name.split("\\."); File parent = target; for (String d : dirs) { parent = new File(parent, d); } parent.mkdirs(); for (Resource c : children) { c.create(parent); } } else if ("file".equals(type)) { InputStream is = getInputStream(); File file = new File(target, name); try { if (is != null) { FileOutputStream fos = new FileOutputStream(file); IOUtils.copy(is, fos); fos.flush(); fos.close(); } else { PrintStream ps = new PrintStream(file); ps.print(content); ps.flush(); ps.close(); } } catch (FileNotFoundException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } } else if ("zip".equals(type)) { try { unzip(target); } catch (FileNotFoundException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } } else { throw new RuntimeException("unknown resource type: " + type); } } | public void transport(File file) throws TransportException { if (file.exists()) { if (file.isDirectory()) { File[] files = file.listFiles(); for (int i = 0; i < files.length; i++) { transport(file); } } else if (file.isFile()) { try { FileChannel inChannel = new FileInputStream(file).getChannel(); FileChannel outChannel = new FileOutputStream(getOption("destination")).getChannel(); inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { log.error("File transfer failed", e); } } } } | 886,082 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public static void copy(String from_name, String to_name) throws IOException { File from_file = new File(from_name); File to_file = new File(to_name); if (!from_file.exists()) abort("FileCopy: no such source file: " + from_name); if (!from_file.isFile()) abort("FileCopy: can't copy directory: " + from_name); if (!from_file.canRead()) abort("FileCopy: source file is unreadable: " + from_name); if (to_file.isDirectory()) to_file = new File(to_file, from_file.getName()); String parent = to_file.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) abort("FileCopy: destination directory doesn't exist: " + parent); if (dir.isFile()) abort("FileCopy: destination is not a directory: " + parent); if (!dir.canWrite()) abort("FileCopy: destination directory is unwriteable: " + parent); FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(from_file); to = new FileOutputStream(to_file); byte[] buffer = new byte[4096]; int bytes_read; while ((bytes_read = from.read(buffer)) != -1) to.write(buffer, 0, bytes_read); } finally { if (from != null) try { from.close(); } catch (IOException e) { ; } if (to != null) try { to.close(); } catch (IOException e) { ; } } } | 886,083 |
1 | public String getHash(String str) { try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(str.getBytes()); byte[] toChapter1Digest = md.digest(); return Keystore.hexEncode(toChapter1Digest); } catch (Exception e) { logger.error("Error in creating DN hash: " + e.getMessage()); return null; } } | public String login() { String authSuccess = "false"; try { String errorMesg = ""; int error; if ((error = utils.stringIsNull(passwd)) != -1) { errorMesg += rb.getString("passwdField") + ": " + utils.errors[error] + " "; } else if ((error = utils.stringIsEmpty(passwd)) != -1) { errorMesg += rb.getString("passwdField") + ": " + utils.errors[error] + " "; } if ((error = utils.stringIsNull(login)) != -1) { errorMesg += rb.getString("loginField") + ": " + utils.errors[error] + " "; } else if ((error = utils.stringIsEmpty(login)) != -1) { errorMesg += rb.getString("loginField") + ": " + utils.errors[error] + " "; } String[] admins = conf.getProperty("admin").split("\\s"); boolean admin = false; for (int i = 0; i < admins.length; i++) { if (admins[i].equals(login)) { admin = true; } } if (!admin) { errorMesg += rb.getString("noAdmin"); session.invalidate(); } else { session.setAttribute("conf", conf); } if (errorMesg.length() > 0) { status = errorMesg; System.out.println(status); FacesContext context = FacesContext.getCurrentInstance(); context.renderResponse(); } else { MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.reset(); md5.update(passwd.getBytes()); byte[] result = md5.digest(); StringBuffer hexString = new StringBuffer(); for (int i = 0; i < result.length; i++) { String hex = Integer.toHexString(0xFF & result[i]); if (hex.length() == 1) { hexString.append('0'); } hexString.append(hex); } authSuccess = (sqlManager.getPassword(login).equals(hexString.toString())) ? "true" : "false"; if (authSuccess.equals("false")) session.invalidate(); } } catch (NoSuchAlgorithmException nsae) { utils.catchExp(nsae); status = utils.getStatus(); if (stacktrace) { stackTrace = utils.getStackTrace(); } FacesContext.getCurrentInstance().renderResponse(); } catch (SQLException sqle) { utils.catchExp(sqle); status = utils.getStatus(); if (stacktrace) { stackTrace = utils.getStackTrace(); } FacesContext.getCurrentInstance().renderResponse(); } return authSuccess; } | 886,084 |
0 | @SuppressWarnings("unchecked") public static <T extends Class> Collection<T> listServices(T serviceType, ClassLoader classLoader) throws IOException, ClassNotFoundException { final Collection<T> result = new LinkedHashSet<T>(); final Enumeration<URL> resouces = classLoader.getResources("META-INF/services/" + serviceType.getName()); while (resouces.hasMoreElements()) { final URL url = resouces.nextElement(); final BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); try { String line = reader.readLine(); while (line != null) { if (line.startsWith("#")) { } else if ("".equals(line.trim())) { } else { final T implClass = (T) Class.forName(line, true, classLoader); if (!serviceType.isAssignableFrom(implClass)) { throw new IllegalStateException(String.format("%s: class %s does not implement required interfafce %s", url, implClass, serviceType)); } result.add(implClass); } line = reader.readLine(); } } finally { reader.close(); } } return result; } | @Override public DataTable generateDataTable(Query query, HttpServletRequest request) throws DataSourceException { String url = request.getParameter(URL_PARAM_NAME); if (StringUtils.isEmpty(url)) { log.error("url parameter not provided."); throw new DataSourceException(ReasonType.INVALID_REQUEST, "url parameter not provided"); } Reader reader; try { reader = new BufferedReader(new InputStreamReader(new URL(url).openStream())); } catch (MalformedURLException e) { log.error("url is malformed: " + url); throw new DataSourceException(ReasonType.INVALID_REQUEST, "url is malformed: " + url); } catch (IOException e) { log.error("Couldn't read from url: " + url, e); throw new DataSourceException(ReasonType.INVALID_REQUEST, "Couldn't read from url: " + url); } DataTable dataTable = null; ULocale requestLocale = DataSourceHelper.getLocaleFromRequest(request); try { dataTable = CsvDataSourceHelper.read(reader, null, true, requestLocale); } catch (IOException e) { log.error("Couldn't read from url: " + url, e); throw new DataSourceException(ReasonType.INVALID_REQUEST, "Couldn't read from url: " + url); } return dataTable; } | 886,085 |
1 | public static void fileCopy(String src, String dst) { try { FileInputStream fis = new FileInputStream(src); FileOutputStream fos = new FileOutputStream(dst); int read = -1; byte[] buf = new byte[8192]; while ((read = fis.read(buf)) != -1) { fos.write(buf, 0, read); } fos.flush(); fos.close(); fis.close(); } catch (Exception e) { e.printStackTrace(); } } | public static void copy(FileInputStream from, FileOutputStream to) throws IOException { FileChannel fromChannel = from.getChannel(); FileChannel toChannel = to.getChannel(); copy(fromChannel, toChannel); fromChannel.close(); toChannel.close(); } | 886,086 |
1 | public static void createModelZip(String filename, String tempdir) throws EDITSException { try { BufferedInputStream origin = null; FileOutputStream dest = new FileOutputStream(filename); ZipOutputStream out = new ZipOutputStream(new BufferedOutputStream(dest)); int BUFFER = 2048; byte data[] = new byte[BUFFER]; File f = new File(tempdir); for (File fs : f.listFiles()) { FileInputStream fi = new FileInputStream(fs.getAbsolutePath()); origin = new BufferedInputStream(fi, BUFFER); ZipEntry entry = new ZipEntry(fs.getName()); out.putNextEntry(entry); int count; while ((count = origin.read(data, 0, BUFFER)) != -1) out.write(data, 0, count); out.closeEntry(); origin.close(); } out.close(); } catch (Exception e) { throw new EDITSException("Can not create a model in file " + filename + " from folder " + tempdir); } } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 886,087 |
1 | static void conditionalCopyFile(File dst, File src) throws IOException { if (dst.equals(src)) return; if (!dst.isFile() || dst.lastModified() < src.lastModified()) { System.out.println("Copying " + src); InputStream is = new FileInputStream(src); OutputStream os = new FileOutputStream(dst); byte[] buf = new byte[8192]; int len; while ((len = is.read(buf)) > 0) os.write(buf, 0, len); os.close(); is.close(); } } | public void deployDir(File srcDir, String destDir) { File[] dirFiles = srcDir.listFiles(); for (int k = 0; dirFiles != null && k < dirFiles.length; k++) { if (!dirFiles[k].getName().startsWith(".")) { if (dirFiles[k].isFile()) { File deployFile = new File(destDir + File.separator + dirFiles[k].getName()); if (dirFiles[k].lastModified() != deployFile.lastModified() || dirFiles[k].length() != deployFile.length()) { IOUtils.copy(dirFiles[k], deployFile); } } else if (dirFiles[k].isDirectory()) { String newDestDir = destDir + File.separator + dirFiles[k].getName(); deployDir(dirFiles[k], newDestDir); } } } } | 886,088 |
0 | public static String encodeFromFile(String filename) throws java.io.IOException, URISyntaxException { String encodedData = null; Base641.InputStream bis = null; File file; try { URL url = new URL(filename); URLConnection conn = url.openConnection(); file = new File("myfile.doc"); java.io.InputStream inputStream = (java.io.InputStream) conn.getInputStream(); FileOutputStream out = new FileOutputStream(file); byte buf[] = new byte[1024]; int len; while ((len = inputStream.read(buf)) > 0) out.write(buf, 0, len); out.close(); inputStream.close(); byte[] buffer = new byte[Math.max((int) (file.length() * 1.4), 40)]; int length = 0; int numBytes = 0; bis = new Base641.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(file)), Base641.ENCODE); while ((numBytes = bis.read(buffer, length, 4096)) >= 0) { length += numBytes; } encodedData = new String(buffer, 0, length, Base641.PREFERRED_ENCODING); } catch (java.io.IOException e) { throw e; } finally { try { bis.close(); } catch (Exception e) { } } return encodedData; } | public void cleanup(long timeout) throws PersisterException { long threshold = System.currentTimeMillis() - timeout; Connection conn = null; PreparedStatement ps = null; try { conn = _ds.getConnection(); conn.setAutoCommit(true); ps = conn.prepareStatement("delete from " + _table_name + " where " + _ts_col + " < ?"); ps.setLong(1, threshold); ps.executeUpdate(); } catch (Throwable th) { if (conn != null) { try { conn.rollback(); } catch (Throwable th2) { } } throw new PersisterException("Failed to cleanup timed out objects: ", th); } finally { if (ps != null) { try { ps.close(); } catch (Throwable th) { } } if (conn != null) { try { conn.close(); } catch (Throwable th) { } } } } | 886,089 |
1 | private static long saveAndClosePDFDocument(PDDocument document, OutputStreamProvider outProvider) throws IOException, COSVisitorException { File tempFile = null; InputStream in = null; OutputStream out = null; try { tempFile = File.createTempFile("temp", "pdf"); OutputStream tempFileOut = new FileOutputStream(tempFile); tempFileOut = new BufferedOutputStream(tempFileOut); document.save(tempFileOut); document.close(); tempFileOut.close(); long length = tempFile.length(); in = new BufferedInputStream(new FileInputStream(tempFile)); out = new BufferedOutputStream(outProvider.getOutputStream()); IOUtils.copy(in, out); return length; } finally { if (in != null) { IOUtils.closeQuietly(in); } if (out != null) { IOUtils.closeQuietly(out); } if (tempFile != null && !FileUtils.deleteQuietly(tempFile)) { tempFile.deleteOnExit(); } } } | private void putAlgosFromJar(File jarfile, AlgoDir dir, Model model) throws FileNotFoundException, IOException { URLClassLoader urlLoader = new URLClassLoader(new URL[] { jarfile.toURI().toURL() }); JarInputStream jis = new JarInputStream(new FileInputStream(jarfile)); JarEntry entry = jis.getNextJarEntry(); String name = null; String tmpdir = System.getProperty("user.dir") + File.separator + Application.getProperty("dir.tmp") + File.separator; byte[] buffer = new byte[1000]; while (entry != null) { name = entry.getName(); if (name.endsWith(".class")) { name = name.substring(0, name.length() - 6); name = name.replace('/', '.'); try { Class<?> cls = urlLoader.loadClass(name); if (IAlgorithm.class.isAssignableFrom(cls) && !cls.isInterface() && ((cls.getModifiers() & Modifier.ABSTRACT) == 0)) { dir.addAlgorithm(cls); model.putClass(cls.getName(), cls); } else if (ISerializable.class.isAssignableFrom(cls)) { model.putClass(cls.getName(), cls); } } catch (ClassNotFoundException e) { e.printStackTrace(); } } else if (Constants.isAllowedImageType(name)) { int lastSep = name.lastIndexOf("/"); if (lastSep != -1) { String dirs = tmpdir + name.substring(0, lastSep); File d = new File(dirs); if (!d.exists()) d.mkdirs(); } String filename = tmpdir + name; File f = new File(filename); if (!f.exists()) { f.createNewFile(); FileOutputStream fos = new FileOutputStream(f); int read = -1; while ((read = jis.read(buffer)) != -1) { fos.write(buffer, 0, read); } fos.close(); } } entry = jis.getNextJarEntry(); } } | 886,090 |
1 | private static byte[] calcMd5(String pass) { try { MessageDigest digest = java.security.MessageDigest.getInstance("MD5"); digest.update(pass.getBytes(), 0, pass.length()); byte[] hash = digest.digest(); return hash; } catch (NoSuchAlgorithmException e) { System.err.println("No MD5 algorithm found"); throw new RuntimeException(e); } } | private StringBuffer hashPassword(StringBuffer password, String mode) { MessageDigest m = null; StringBuffer hash = new StringBuffer(); try { m = MessageDigest.getInstance(mode); m.update(password.toString().getBytes("UTF8")); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } catch (UnsupportedEncodingException e) { e.printStackTrace(); } byte[] digest = m.digest(); for (int i = 0; i < digest.length; i++) { String hex = Integer.toHexString(digest[i]); if (hex.length() == 1) hex = "0" + hex; hex = hex.substring(hex.length() - 2); hash.append(hex); } return hash; } | 886,091 |
0 | public static String getMD5HashFromString(String message) { String hashword = null; try { MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(message.getBytes()); BigInteger hash = new BigInteger(1, md5.digest()); hashword = hash.toString(16); } catch (NoSuchAlgorithmException nsae) { } return hashword; } | public static File copyFile(String path) { File src = new File(path); File dest = new File(src.getName()); try { if (!dest.exists()) { dest.createNewFile(); } FileChannel source = new FileInputStream(src).getChannel(); FileChannel destination = new FileOutputStream(dest).getChannel(); destination.transferFrom(source, 0, source.size()); source.close(); destination.close(); } catch (FileNotFoundException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } return dest; } | 886,092 |
1 | @Override public void run() { long timeout = 10 * 1000L; long start = (new Date()).getTime(); try { InputStream is = socket.getInputStream(); boolean available = false; while (!available && !socket.isClosed()) { try { if (is.available() != 0) { available = true; } else { Thread.sleep(100); } } catch (Exception e) { LOG.error("Error checking socket", e); } long curr = (new Date()).getTime(); if ((curr - start) >= timeout) { break; } } if (socket.isClosed()) { } else { ByteArrayOutputStream baos = new ByteArrayOutputStream(); IOUtils.copy(is, baos); baos.flush(); baos.close(); data = baos.toByteArray(); } String msg = FtpResponse.ReadComplete.asString() + ClientCommand.SP + "Read Complete" + ClientCommand.CRLF; List<String> list = new ArrayList<String>(); list.add(msg); ClientResponse response = new ClientResponse(list); ftpClient.notifyListeners(response); } catch (Exception e) { LOG.error("Error reading server response", e); } } | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | 886,093 |
0 | private void sendData(HttpServletResponse response, MediaBean mediaBean) throws IOException { if (logger.isInfoEnabled()) logger.info("sendData[" + mediaBean + "]"); response.setContentLength(mediaBean.getContentLength()); response.setContentType(mediaBean.getContentType()); response.addHeader("Last-Modified", mediaBean.getLastMod()); response.addHeader("Cache-Control", "must-revalidate"); response.addHeader("content-disposition", "attachment, filename=" + (new Date()).getTime() + "_" + mediaBean.getFileName()); byte[] content = mediaBean.getContent(); InputStream is = null; OutputStream os = null; try { os = response.getOutputStream(); is = new ByteArrayInputStream(content); IOUtils.copy(is, os); } catch (IOException e) { logger.error(e, e); } finally { if (is != null) try { is.close(); } catch (IOException e) { } if (os != null) try { os.close(); } catch (IOException e) { } } } | public void playSIDFromURL(String name) { player.reset(); player.setStatus("Loading song: " + name); URL url; try { if (name.startsWith("http")) { url = new URL(name); } else { url = getResource(name); } if (player.readSID(url.openConnection().getInputStream())) { player.playSID(); } } catch (IOException ioe) { System.out.println("Could not load: "); ioe.printStackTrace(); player.setStatus("Could not load SID: " + ioe.getMessage()); } } | 886,094 |
1 | public static void cpdir(File src, File dest) throws BrutException { dest.mkdirs(); File[] files = src.listFiles(); for (int i = 0; i < files.length; i++) { File file = files[i]; File destFile = new File(dest.getPath() + File.separatorChar + file.getName()); if (file.isDirectory()) { cpdir(file, destFile); continue; } try { InputStream in = new FileInputStream(file); OutputStream out = new FileOutputStream(destFile); IOUtils.copy(in, out); in.close(); out.close(); } catch (IOException ex) { throw new BrutException("Could not copy file: " + file, ex); } } } | private static void copyFile(File f) { try { String baseName = baseDir.getCanonicalPath(); String fullPath = f.getCanonicalPath(); String nameSufix = fullPath.substring(baseName.length() + 1); File destFile = new File(FileDestDir, nameSufix); destFile.getParentFile().mkdirs(); destFile.createNewFile(); FileChannel fromChannel = new FileInputStream(f).getChannel(); FileChannel toChannel = new FileOutputStream(destFile).getChannel(); fromChannel.transferTo(0, fromChannel.size(), toChannel); fromChannel.close(); toChannel.close(); destFile.setLastModified(f.lastModified()); } catch (Exception e) { System.err.println(e.getMessage()); } } | 886,095 |
0 | static void copyFile(File file, File file1) throws IOException { byte abyte0[] = new byte[512]; FileInputStream fileinputstream = new FileInputStream(file); FileOutputStream fileoutputstream = new FileOutputStream(file1); int i; while ((i = fileinputstream.read(abyte0)) > 0) fileoutputstream.write(abyte0, 0, i); fileinputstream.close(); fileoutputstream.close(); } | @edu.umd.cs.findbugs.annotations.SuppressWarnings({ "DLS", "REC" }) public static String md5Encode(String val) { String output = null; try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(val.getBytes()); byte[] digest = md.digest(); output = base64Encode(digest); } catch (Exception e) { } return output; } | 886,096 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public static synchronized BaseFont getL2BaseFont() { if (l2baseFont == null) { final ConfigProvider conf = ConfigProvider.getInstance(); try { final ByteArrayOutputStream tmpBaos = new ByteArrayOutputStream(); String fontPath = conf.getNotEmptyProperty("font.path", null); String fontName; String fontEncoding; InputStream tmpIs; if (fontPath != null) { fontName = conf.getNotEmptyProperty("font.name", null); if (fontName == null) { fontName = new File(fontPath).getName(); } fontEncoding = conf.getNotEmptyProperty("font.encoding", null); if (fontEncoding == null) { fontEncoding = BaseFont.WINANSI; } tmpIs = new FileInputStream(fontPath); } else { fontName = Constants.L2TEXT_FONT_NAME; fontEncoding = BaseFont.IDENTITY_H; tmpIs = FontUtils.class.getResourceAsStream(Constants.L2TEXT_FONT_PATH); } IOUtils.copy(tmpIs, tmpBaos); tmpIs.close(); tmpBaos.close(); l2baseFont = BaseFont.createFont(fontName, fontEncoding, BaseFont.EMBEDDED, BaseFont.CACHED, tmpBaos.toByteArray(), null); } catch (Exception e) { e.printStackTrace(); try { l2baseFont = BaseFont.createFont(BaseFont.HELVETICA, BaseFont.WINANSI, BaseFont.EMBEDDED); } catch (Exception ex) { } } } return l2baseFont; } | 886,097 |
1 | public static String SHA1(String text) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md; md = MessageDigest.getInstance("SHA-1"); byte[] sha1hash = new byte[40]; md.update(text.getBytes("iso-8859-1"), 0, text.length()); sha1hash = md.digest(); return convertToHex(sha1hash); } | public static byte[] crypt(String key, String salt) throws NoSuchAlgorithmException { int key_len = key.length(); if (salt.startsWith(saltPrefix)) { salt = salt.substring(saltPrefix.length()); } int salt_len = Math.min(getDollarLessLength(salt), 8); MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(key.getBytes()); md5.update(saltPrefix.getBytes()); md5.update(salt.getBytes(), 0, salt_len); MessageDigest md5_alt = MessageDigest.getInstance("MD5"); md5_alt.update(key.getBytes()); md5_alt.update(salt.getBytes(), 0, salt_len); md5_alt.update(key.getBytes()); byte[] altResult = md5_alt.digest(); int cnt; for (cnt = key_len; cnt > 16; cnt -= 16) { md5.update(altResult, 0, 16); } md5.update(altResult, 0, cnt); altResult[0] = 0; for (cnt = key_len; cnt > 0; cnt >>= 1) { md5.update(((cnt & 1) != 0) ? altResult : key.getBytes(), 0, 1); } altResult = md5.digest(); for (cnt = 0; cnt < 1000; cnt++) { md5.reset(); if ((cnt & 1) != 0) { md5.update(key.getBytes()); } else { md5.update(altResult, 0, 16); } if ((cnt % 3) != 0) { md5.update(salt.getBytes(), 0, salt_len); } if ((cnt % 7) != 0) { md5.update(key.getBytes()); } if ((cnt & 1) != 0) { md5.update(altResult, 0, 16); } else { md5.update(key.getBytes()); } altResult = md5.digest(); } StringBuilder sb = new StringBuilder(); sb.append(saltPrefix); sb.append(new String(salt.getBytes(), 0, salt_len)); sb.append('$'); sb.append(b64From24bit(altResult[0], altResult[6], altResult[12], 4)); sb.append(b64From24bit(altResult[1], altResult[7], altResult[13], 4)); sb.append(b64From24bit(altResult[2], altResult[8], altResult[14], 4)); sb.append(b64From24bit(altResult[3], altResult[9], altResult[15], 4)); sb.append(b64From24bit(altResult[4], altResult[10], altResult[5], 4)); sb.append(b64From24bit((byte) 0, (byte) 0, altResult[11], 2)); return sb.toString().getBytes(); } | 886,098 |
1 | private static String genRandomGUID(boolean secure) { String valueBeforeMD5 = ""; String valueAfterMD5 = ""; MessageDigest md5 = null; StringBuffer sbValueBeforeMD5 = new StringBuffer(); try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { System.out.println("Error: " + e); return valueBeforeMD5; } long time = System.currentTimeMillis(); long rand = 0; if (secure) { rand = mySecureRand.nextLong(); } else { rand = myRand.nextLong(); } sbValueBeforeMD5.append(s_id); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(time)); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(rand)); valueBeforeMD5 = sbValueBeforeMD5.toString(); md5.update(valueBeforeMD5.getBytes()); byte[] array = md5.digest(); String strTemp = ""; for (int i = 0; i < array.length; i++) { strTemp = (Integer.toHexString(array[i] & 0XFF)); if (strTemp.length() == 1) { valueAfterMD5 = valueAfterMD5 + "0" + strTemp; } else { valueAfterMD5 = valueAfterMD5 + strTemp; } } return valueAfterMD5.toUpperCase(); } | public static String encrypt(String message) { try { MessageDigest digest = MessageDigest.getInstance("MD5"); digest.update(message.getBytes()); BASE64Encoder encoder = new BASE64Encoder(); return encoder.encode(digest.digest()); } catch (NoSuchAlgorithmException ex) { ex.printStackTrace(); return null; } } | 886,099 |
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