label int64 0 1 | func1 stringlengths 173 53.1k | func2 stringlengths 173 53.1k | id int64 0 901k |
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1 | public static void copyFile(File src, String srcEncoding, File dest, String destEncoding) throws IOException { InputStreamReader in = new InputStreamReader(new FileInputStream(src), srcEncoding); OutputStreamWriter out = new OutputStreamWriter(new RobustFileOutputStream(dest), destEncoding); int c; while ((c = in.read()) != -1) out.write(c); out.flush(); in.close(); out.close(); } | @Override public void run() { try { IOUtils.copy(_is, processOutStr); } catch (final IOException ioe) { proc.destroy(); } finally { IOUtils.closeQuietly(_is); IOUtils.closeQuietly(processOutStr); } } | 886,100 |
0 | public void create(Session session) { Connection conn = session.getConnection(this); Statement stat = null; StringBuilder out = new StringBuilder(256); Appendable sql = out; List<MetaTable> tables = new ArrayList<MetaTable>(); List<MetaColumn> newColumns = new ArrayList<MetaColumn>(); List<MetaColumn> foreignColumns = new ArrayList<MetaColumn>(); List<MetaIndex> indexes = new ArrayList<MetaIndex>(); boolean createSequenceTable = false; int tableTotalCount = getTableTotalCount(); try { stat = conn.createStatement(); if (isSequenceTableRequired()) { PreparedStatement ps = null; ResultSet rs = null; Throwable exception = null; String logMsg = ""; try { sql = getDialect().printSequenceCurrentValue(findFirstSequencer(), out); ps = conn.prepareStatement(sql.toString()); ps.setString(1, "-"); rs = ps.executeQuery(); } catch (Throwable e) { exception = e; } if (exception != null) { switch(MetaParams.ORM2DLL_POLICY.of(ormHandler.getParameters())) { case VALIDATE: throw new IllegalStateException(logMsg, exception); case CREATE_DDL: case CREATE_OR_UPDATE_DDL: createSequenceTable = true; } } if (LOGGER.isLoggable(Level.INFO)) { logMsg = "Table '" + SqlDialect.COMMON_SEQ_TABLE_NAME + "' {0} available on the database '{1}'."; logMsg = MessageFormat.format(logMsg, exception != null ? "is not" : "is", getId()); LOGGER.log(Level.INFO, logMsg); } try { if (exception != null) { conn.rollback(); } } finally { close(null, ps, rs, false); } } boolean ddlOnly = false; switch(MetaParams.ORM2DLL_POLICY.of(ormHandler.getParameters())) { case CREATE_DDL: ddlOnly = true; case CREATE_OR_UPDATE_DDL: case VALIDATE: boolean change = isModelChanged(conn, tables, newColumns, indexes); if (change && ddlOnly) { if (tables.size() < tableTotalCount) { return; } } break; case DO_NOTHING: default: return; } switch(MetaParams.CHECK_KEYWORDS.of(getParams())) { case WARNING: case EXCEPTION: Set<String> keywords = getDialect().getKeywordSet(conn); for (MetaTable table : tables) { if (table.isTable()) { checkKeyWord(MetaTable.NAME.of(table), table, keywords); for (MetaColumn column : MetaTable.COLUMNS.of(table)) { checkKeyWord(MetaColumn.NAME.of(column), table, keywords); } } } for (MetaColumn column : newColumns) { checkKeyWord(MetaColumn.NAME.of(column), column.getTable(), keywords); } for (MetaIndex index : indexes) { checkKeyWord(MetaIndex.NAME.of(index), MetaIndex.TABLE.of(index), keywords); } } if (tableTotalCount == tables.size()) for (String schema : getSchemas(tables)) { out.setLength(0); sql = getDialect().printCreateSchema(schema, out); if (isUsable(sql)) { try { stat.executeUpdate(sql.toString()); } catch (SQLException e) { LOGGER.log(Level.INFO, "{0}: {1}; {2}", new Object[] { e.getClass().getName(), sql.toString(), e.getMessage() }); conn.rollback(); } } } int tableCount = 0; for (MetaTable table : tables) { if (table.isTable()) { tableCount++; out.setLength(0); sql = getDialect().printTable(table, out); executeUpdate(sql, stat); foreignColumns.addAll(table.getForeignColumns()); } } for (MetaColumn column : newColumns) { out.setLength(0); sql = getDialect().printAlterTable(column, out); executeUpdate(sql, stat); if (column.isForeignKey()) { foreignColumns.add(column); } } for (MetaIndex index : indexes) { out.setLength(0); sql = getDialect().printIndex(index, out); executeUpdate(sql, stat); } for (MetaColumn column : foreignColumns) { if (column.isForeignKey()) { out.setLength(0); MetaTable table = MetaColumn.TABLE.of(column); sql = getDialect().printForeignKey(column, table, out); executeUpdate(sql, stat); } } if (createSequenceTable) { out.setLength(0); sql = getDialect().printSequenceTable(this, out); executeUpdate(sql, stat); } List<MetaTable> cTables = null; switch(MetaParams.COMMENT_POLICY.of(ormHandler.getParameters())) { case FOR_NEW_OBJECT: cTables = tables; break; case ALWAYS: case ON_ANY_CHANGE: cTables = TABLES.getList(this); break; case NEVER: cTables = Collections.emptyList(); break; default: throw new IllegalStateException("Unsupported parameter"); } if (!cTables.isEmpty()) { sql = out; createTableComments(cTables, stat, out); } conn.commit(); } catch (Throwable e) { try { conn.rollback(); } catch (SQLException ex) { LOGGER.log(Level.WARNING, "Can't rollback DB" + getId(), ex); } throw new IllegalArgumentException(Session.SQL_ILLEGAL + sql, e); } } | private static void getFileFtp(String user, String password, String host, int port, String fileName, String location) throws Exception { Log.info("\nretrieve " + fileName + NEW_LINE); FTPClient client = new FTPClient(); client.connect(host, port); int reply = client.getReplyCode(); if (!FTPReply.isPositiveCompletion(reply)) { throw new Exception("FTP fail to connect"); } if (!client.login(user, password)) { throw new Exception("FTP fail to login"); } try { File locationFile = new File(location); File dest = new File(locationFile, fileName); if (dest.exists()) { dest.delete(); } else { locationFile.mkdirs(); } boolean status = client.changeWorkingDirectory("/"); Log.info("chdir-status:" + status + NEW_LINE); client.setFileTransferMode(FTPClient.BINARY_FILE_TYPE); client.setFileType(FTPClient.BINARY_FILE_TYPE); client.enterLocalActiveMode(); InputStream in = client.retrieveFileStream(fileName); if (in == null) { Log.error("Input stream is null\n"); throw new Exception("Fail to retrieve file " + fileName); } Thread.sleep(3000); saveInputStreamToFile(in, new File(location, fileName)); } finally { client.disconnect(); } } | 886,101 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public MemoryBinaryBody(InputStream is) throws IOException { TempPath tempPath = TempStorage.getInstance().getRootTempPath(); ByteArrayOutputStream out = new ByteArrayOutputStream(); IOUtils.copy(is, out); out.close(); tempFile = out.toByteArray(); } | 886,102 |
0 | @Override public void run() { try { if (LOG.isDebugEnabled()) { LOG.debug("Backupthread started"); } if (_file.exists()) { _file.delete(); } final ZipOutputStream zOut = new ZipOutputStream(new FileOutputStream(_file)); zOut.setLevel(9); final File xmlFile = File.createTempFile("mp3db", ".xml"); final OutputStream ost = new FileOutputStream(xmlFile); final XMLStreamWriter writer = XMLOutputFactory.newInstance().createXMLStreamWriter(ost, "UTF-8"); writer.writeStartDocument("UTF-8", "1.0"); writer.writeCharacters("\n"); writer.writeStartElement("mp3db"); writer.writeAttribute("version", Integer.toString(Main.ENGINEVERSION)); final MediafileDAO mfDAO = new MediafileDAO(); final AlbumDAO aDAO = new AlbumDAO(); final CdDAO cdDAO = new CdDAO(); final CoveritemDAO ciDAO = new CoveritemDAO(); int itemCount = 0; try { itemCount += mfDAO.getCount(); itemCount += aDAO.getCount(); itemCount += cdDAO.getCount(); itemCount += ciDAO.getCount(); fireStatusEvent(new StatusEvent(this, StatusEventType.MAX_VALUE, itemCount)); } catch (final Exception e) { LOG.error("Error getting size", e); fireStatusEvent(new StatusEvent(this, StatusEventType.MAX_VALUE, -1)); } int cdCounter = 0; int mediafileCounter = 0; int albumCounter = 0; int coveritemCounter = 0; int counter = 0; final List<CdIf> data = cdDAO.getCdsOrderById(); if (data.size() > 0) { final Map<Integer, Integer> albums = new HashMap<Integer, Integer>(); final Iterator<CdIf> it = data.iterator(); while (it.hasNext() && !_break) { final CdIf cd = it.next(); final Integer cdId = Integer.valueOf(cdCounter++); writer.writeStartElement(TypeConstants.XML_CD); exportCd(writer, cd, cdId); fireStatusEvent(new StatusEvent(this, StatusEventType.NEW_VALUE, ++counter)); final List<MediafileIf> files = cd.getMediafiles(); final Iterator<MediafileIf> mfit = files.iterator(); MediafileIf mf; while (mfit.hasNext() && !_break) { mf = mfit.next(); final Integer mfId = Integer.valueOf(mediafileCounter++); writer.writeStartElement(TypeConstants.XML_MEDIAFILE); exportMediafile(writer, mf, mfId); fireStatusEvent(new StatusEvent(this, StatusEventType.NEW_VALUE, ++counter)); final AlbumIf a = mf.getAlbum(); if (a != null) { Integer inte; if (albums.containsKey(a.getAid())) { inte = albums.get(a.getAid()); writeLink(writer, TypeConstants.XML_ALBUM, inte); } else { inte = Integer.valueOf(albumCounter++); writer.writeStartElement(TypeConstants.XML_ALBUM); exportAlbum(writer, a, inte); fireStatusEvent(new StatusEvent(this, StatusEventType.NEW_VALUE, ++counter)); albums.put(a.getAid(), inte); if (a.hasCoveritems() && !_break) { final List<CoveritemIf> covers = a.getCoveritems(); final Iterator<CoveritemIf> coit = covers.iterator(); while (coit.hasNext() && !_break) { final Integer coveritemId = Integer.valueOf(coveritemCounter++); exportCoveritem(writer, zOut, coit.next(), coveritemId); fireStatusEvent(new StatusEvent(this, StatusEventType.NEW_VALUE, ++counter)); } } writer.writeEndElement(); } GenericDAO.getEntityManager().close(); } writer.writeEndElement(); } writer.writeEndElement(); writer.flush(); it.remove(); GenericDAO.getEntityManager().close(); } } writer.writeEndElement(); writer.writeEndDocument(); writer.flush(); writer.close(); ost.flush(); ost.close(); if (_break) { zOut.close(); _file.delete(); } else { zOut.putNextEntry(new ZipEntry("mp3.xml")); final InputStream xmlIn = FileUtils.openInputStream(xmlFile); IOUtils.copy(xmlIn, zOut); xmlIn.close(); zOut.close(); } xmlFile.delete(); fireStatusEvent(new StatusEvent(this, StatusEventType.FINISH)); } catch (final Exception e) { if (LOG.isDebugEnabled()) { LOG.debug("Error backup database", e); } fireStatusEvent(new StatusEvent(this, e, "")); _messenger.fireMessageEvent(new MessageEvent(this, "ERROR", MessageEventTypeEnum.ERROR, GuiStrings.getInstance().getString("error.backup"), e)); } } | protected BufferedImage handleBNException() { if (params.uri.startsWith("http://purl.pt/")) try { URLConnection connection = new URL(params.uri).openConnection(); if (params.uri.endsWith("/")) params.uri = params.uri.substring(0, params.uri.length() - 1); int index = params.uri.lastIndexOf("/"); params.uri = "http://purl.pt/homepage/" + params.uri.substring(index + 1) + "/" + params.uri.substring(index + 1); BufferedReader reader = new BufferedReader(new InputStreamReader(connection.getInputStream())); String url = null; while ((url = reader.readLine()) != null) { index = url.indexOf(params.uri); if (index != -1) { url = url.substring(index); url = url.substring(0, url.indexOf("\"")); break; } } if (url != null) { connection = new URL(url).openConnection(); return processNewUri(connection); } } catch (Exception e) { } return null; } | 886,103 |
0 | public static void copy(String fromFileName, String toFileName) throws IOException { File fromFile = new File(fromFileName); File toFile = new File(toFileName); FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(fromFile); to = new FileOutputStream(toFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead); } finally { from.close(); to.close(); } } | public boolean searchEntity(String login, String password, String searcheId, OutputStream os) throws SynchronizationException { HttpClient client = new SSLHttpClient(); try { StringBuilder builder = new StringBuilder(url).append("?" + CMD_PARAM + "=" + CMD_SEARCH).append("&" + LOGIN_PARAM + "=" + URLEncoder.encode(login, "UTF-8")).append("&" + PASSWD_PARAM + "=" + URLEncoder.encode(password, "UTF-8")).append("&" + SEARCH_PARAM + "=" + searcheId); HttpGet method = httpGetMethod(builder.toString()); HttpResponse response = client.execute(method); Header header = response.getFirstHeader(HEADER_NAME); if (header != null && HEADER_VALUE.equals(HEADER_VALUE)) { int code = response.getStatusLine().getStatusCode(); if (code == HttpStatus.SC_OK) { long expectedLength = response.getEntity().getContentLength(); InputStream is = response.getEntity().getContent(); FileUtils.writeInFile(is, os, expectedLength); return true; } else { throw new SynchronizationException("Command 'search' : HTTP error code returned." + code, SynchronizationException.ERROR_SEARCH); } } else { throw new SynchronizationException("HTTP header is invalid", SynchronizationException.ERROR_SEARCH); } } catch (Exception e) { throw new SynchronizationException("Command 'search' -> ", e, SynchronizationException.ERROR_SEARCH); } } | 886,104 |
1 | private void setInlineXML(Entry entry, DatastreamXMLMetadata ds) throws UnsupportedEncodingException, StreamIOException { String content; if (m_obj.hasContentModel(Models.SERVICE_DEPLOYMENT_3_0) && (ds.DatastreamID.equals("SERVICE-PROFILE") || ds.DatastreamID.equals("WSDL"))) { content = DOTranslationUtility.normalizeInlineXML(new String(ds.xmlContent, m_encoding), m_transContext); } else { content = new String(ds.xmlContent, m_encoding); } if (m_format.equals(ATOM_ZIP1_1)) { String name = ds.DSVersionID + ".xml"; try { m_zout.putNextEntry(new ZipEntry(name)); InputStream is = new ByteArrayInputStream(content.getBytes(m_encoding)); IOUtils.copy(is, m_zout); m_zout.closeEntry(); is.close(); } catch (IOException e) { throw new StreamIOException(e.getMessage(), e); } IRI iri = new IRI(name); entry.setSummary(ds.DSVersionID); entry.setContent(iri, ds.DSMIME); } else { entry.setContent(content, ds.DSMIME); } } | public static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | 886,105 |
0 | public static void copyTo(File inFile, File outFile) throws IOException { char[] cbuff = new char[32768]; BufferedReader reader = new BufferedReader(new FileReader(inFile)); BufferedWriter writer = new BufferedWriter(new FileWriter(outFile)); int readedBytes = 0; long absWrittenBytes = 0; while ((readedBytes = reader.read(cbuff, 0, cbuff.length)) != -1) { writer.write(cbuff, 0, readedBytes); absWrittenBytes += readedBytes; } reader.close(); writer.close(); } | public boolean checkLogin(String pMail, String pMdp) { boolean vLoginOk = false; if (pMail == null || pMdp == null) { throw new IllegalArgumentException("Login and password are mandatory. Null values are forbidden."); } try { Criteria crit = ((Session) this.entityManager.getDelegate()).createCriteria(Client.class); crit.add(Restrictions.ilike("email", pMail)); MessageDigest vMd5Instance; try { vMd5Instance = MessageDigest.getInstance("MD5"); vMd5Instance.reset(); vMd5Instance.update(pMdp.getBytes()); byte[] vDigest = vMd5Instance.digest(); BigInteger vBigInt = new BigInteger(1, vDigest); String vHashPassword = vBigInt.toString(16); crit.add(Restrictions.eq("mdp", vHashPassword)); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } Client pClient = (Client) crit.uniqueResult(); vLoginOk = (pClient != null); } catch (DataAccessException e) { mLogger.error("Exception - DataAccessException occurs : {} on complete checkLogin( {}, {} )", new Object[] { e.getMessage(), pMail, pMdp }); } return vLoginOk; } | 886,106 |
1 | public static void copyFile(File fromFile, File toFile) throws OWFileCopyException { try { FileChannel src = new FileInputStream(fromFile).getChannel(); FileChannel dest = new FileOutputStream(toFile).getChannel(); dest.transferFrom(src, 0, src.size()); src.close(); dest.close(); } catch (IOException e) { throw (new OWFileCopyException("An error occurred while copying a file", e)); } } | private synchronized Frame addFrame(INSERT_TYPE type, File source) throws IOException { if (source == null) throw new NullPointerException("Parameter 'source' is null"); if (!source.exists()) throw new IOException("File does not exist: " + source.getAbsolutePath()); if (source.length() <= 0) throw new IOException("File is empty: " + source.getAbsolutePath()); File newLocation = new File(Settings.getPropertyString(ConstantKeys.project_dir), formatFileName(frames_.size())); if (newLocation.compareTo(source) != 0) { switch(type) { case MOVE: source.renameTo(newLocation); break; case COPY: FileChannel inChannel = new FileInputStream(source).getChannel(); FileChannel outChannel = new FileOutputStream(newLocation).getChannel(); inChannel.transferTo(0, inChannel.size(), outChannel); if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); break; } } Frame f = new Frame(newLocation); f.createThumbNail(); frames_.add(f); return f; } | 886,107 |
0 | private static void loadPluginsFromClassLoader(ClassLoader classLoader) throws IOException { Enumeration res = classLoader.getResources("META-INF/services/" + GDSFactoryPlugin.class.getName()); while (res.hasMoreElements()) { URL url = (URL) res.nextElement(); InputStreamReader rin = new InputStreamReader(url.openStream()); BufferedReader bin = new BufferedReader(rin); while (bin.ready()) { String className = bin.readLine(); try { Class clazz = Class.forName(className); GDSFactoryPlugin plugin = (GDSFactoryPlugin) clazz.newInstance(); registerPlugin(plugin); } catch (ClassNotFoundException ex) { if (log != null) log.error("Can't register plugin" + className, ex); } catch (IllegalAccessException ex) { if (log != null) log.error("Can't register plugin" + className, ex); } catch (InstantiationException ex) { if (log != null) log.error("Can't register plugin" + className, ex); } } } } | public void testGetContentInputStream() { URL url; try { url = new URL("http://www.wurzer.org/" + "Homepage/Publikationen/Eintrage/2009/10/7_Wissen_dynamisch_organisieren_files/" + "KnowTech%202009%20-%20Wissen%20dynamisch%20organisieren.pdf"); InputStream in = url.openStream(); Content c = provider.getContent(in); assertNotNull(c); assertTrue(!c.getFulltext().isEmpty()); assertTrue(c.getModificationDate() < System.currentTimeMillis()); assertTrue(c.getAttributes().size() > 0); assertEquals("KnowTech 2009 - Wissen dynamisch organisieren", c.getAttributeByName("Title").getValue()); assertEquals("Joerg Wurzer", c.getAttributeByName("Author").getValue()); assertEquals("Pages", c.getAttributeByName("Creator").getValue()); assertNull(c.getAttributeByName("Keywords")); assertTrue(c.getFulltext().startsWith("Wissen dynamisch organisieren")); assertTrue(c.getAttributeByName("Author").isKey()); assertTrue(!c.getAttributeByName("Producer").isKey()); } catch (MalformedURLException e) { fail("Malformed url - " + e.getMessage()); } catch (IOException e) { fail("Couldn't read file - " + e.getMessage()); } } | 886,108 |
0 | private String encode(String arg) { try { final MessageDigest digest = MessageDigest.getInstance("MD5"); digest.update(arg.getBytes()); byte[] md5sum = digest.digest(); final BigInteger bigInt = new BigInteger(1, md5sum); final String output = bigInt.toString(16); return output; } catch (NoSuchAlgorithmException e) { throw new IllegalStateException("MD5 required: " + e.getMessage(), e); } } | public static void reset() throws Exception { Session session = DataStaticService.getHibernateSessionFactory().openSession(); try { Connection connection = session.connection(); try { Statement statement = connection.createStatement(); try { statement.executeUpdate("delete from Post"); connection.commit(); } finally { statement.close(); } } catch (HibernateException e) { connection.rollback(); throw new Exception(e); } catch (SQLException e) { connection.rollback(); throw new Exception(e); } } catch (SQLException e) { throw new Exception(e); } finally { session.close(); } } | 886,109 |
1 | public boolean update(int idPartida, partida partidaModificada) { int intResult = 0; String sql = "UPDATE partida " + "SET torneo_idTorneo = ?, " + " jugador_idJugadorNegras = ?, jugador_idJugadorBlancas = ?, " + " fecha = ?, " + " resultado = ?, " + " nombreBlancas = ?, nombreNegras = ?, eloBlancas = ?, eloNegras = ?, idApertura = ? " + " WHERE idPartida = " + idPartida; try { connection = conexionBD.getConnection(); connection.setAutoCommit(false); ps = connection.prepareStatement(sql); populatePreparedStatement2(partidaModificada); intResult = ps.executeUpdate(); connection.commit(); } catch (SQLException ex) { ex.printStackTrace(); try { connection.rollback(); } catch (SQLException exe) { exe.printStackTrace(); } } finally { conexionBD.close(ps); conexionBD.close(connection); } return (intResult > 0); } | public boolean renameTo(Folder f) throws MessagingException, StoreClosedException, NullPointerException { String[] aLabels = new String[] { "en", "es", "fr", "de", "it", "pt", "ca", "ja", "cn", "tw", "fi", "ru", "pl", "nl", "xx" }; PreparedStatement oUpdt = null; if (!((DBStore) getStore()).isConnected()) throw new StoreClosedException(getStore(), "Store is not connected"); if (oCatg.isNull(DB.gu_category)) throw new NullPointerException("Folder is closed"); try { oUpdt = getConnection().prepareStatement("DELETE FROM " + DB.k_cat_labels + " WHERE " + DB.gu_category + "=?"); oUpdt.setString(1, oCatg.getString(DB.gu_category)); oUpdt.executeUpdate(); oUpdt.close(); oUpdt.getConnection().prepareStatement("INSERT INTO " + DB.k_cat_labels + " (" + DB.gu_category + "," + DB.id_language + "," + DB.tr_category + "," + DB.url_category + ") VALUES (?,?,?,NULL)"); oUpdt.setString(1, oCatg.getString(DB.gu_category)); for (int l = 0; l < aLabels.length; l++) { oUpdt.setString(2, aLabels[l]); oUpdt.setString(3, f.getName().substring(0, 1).toUpperCase() + f.getName().substring(1).toLowerCase()); oUpdt.executeUpdate(); } oUpdt.close(); oUpdt = null; getConnection().commit(); } catch (SQLException sqle) { try { if (null != oUpdt) oUpdt.close(); } catch (SQLException ignore) { } try { getConnection().rollback(); } catch (SQLException ignore) { } throw new MessagingException(sqle.getMessage(), sqle); } return true; } | 886,110 |
0 | protected void initFilter(URL url) { initFilterCommon(); try { String xmlText = PApplet.join(PApplet.loadStrings(url.openStream()), "\n"); XMLElement xml = new XMLElement(xmlText); loadXML(xml); } catch (IOException e) { System.err.println("Error loading filter: " + e.getMessage()); } initShader(url.toString(), true); } | void sortIds(int a[]) { ExecutionTimer t = new ExecutionTimer(); t.start(); for (int i = a.length; --i >= 0; ) { for (int j = 0; j < i; j++) { if (a[j] > a[j + 1]) { int T = a[j]; a[j] = a[j + 1]; a[j + 1] = T; } } } t.end(); TimerRecordFile timerFile = new TimerRecordFile("sort", "BufferSorting", "sortIds", t.duration()); } | 886,111 |
0 | private void process(int optind, String args[]) throws IOException, XMLStreamException { final int srlimit = 500; final QName att_title = new QName("title"); final QName att_sroffset = new QName("sroffset"); String sroffset = null; String srnamespace = null; if (!this.srnamespaces.isEmpty()) { StringBuilder sb = new StringBuilder(); for (Integer i : this.srnamespaces) { if (sb.length() > 0) sb.append("|"); sb.append(String.valueOf(i)); } srnamespace = sb.toString(); } StringBuilder terms = new StringBuilder(); while (optind < args.length) { if (terms.length() > 0) terms.append(" "); terms.append(args[optind++]); } while (true) { String url = this.base_api + "?action=query" + "&list=search" + "&format=xml" + "&srsearch=" + URLEncoder.encode(terms.toString(), "UTF-8") + (srnamespace != null ? "&srnamespace=" + srnamespace : "") + (sroffset == null ? "" : "&sroffset=" + sroffset) + "&srlimit=" + srlimit + "&srwhat=text&srprop=timestamp"; sroffset = null; LOG.info(url); XMLEventReader reader = this.xmlInputFactory.createXMLEventReader(openStream(url)); while (reader.hasNext()) { XMLEvent event = reader.nextEvent(); if (event.isStartElement()) { StartElement e = event.asStartElement(); String name = e.getName().getLocalPart(); Attribute att = null; if (name.equals("p") && (att = e.getAttributeByName(att_title)) != null) { System.out.println(att.getValue()); } else if (name.equals("search") && (att = e.getAttributeByName(att_sroffset)) != null) { sroffset = att.getValue(); } } } reader.close(); if (sroffset == null) break; } } | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 886,112 |
1 | public static String crypt(String password, String salt) throws java.security.NoSuchAlgorithmException { int saltEnd; int len; int value; int i; MessageDigest hash1; MessageDigest hash2; byte[] digest; byte[] passwordBytes; byte[] saltBytes; StringBuffer result; if (salt.startsWith(magic)) { salt = salt.substring(magic.length()); } if ((saltEnd = salt.indexOf('$')) != -1) { salt = salt.substring(0, saltEnd); } if (salt.length() > 8) { salt = salt.substring(0, 8); } hash1 = MessageDigest.getInstance("MD5"); hash1.update(password.getBytes()); hash1.update(magic.getBytes()); hash1.update(salt.getBytes()); hash2 = MessageDigest.getInstance("MD5"); hash2.update(password.getBytes()); hash2.update(salt.getBytes()); hash2.update(password.getBytes()); digest = hash2.digest(); for (len = password.length(); len > 0; len -= 16) { hash1.update(digest, 0, len > 16 ? 16 : len); } passwordBytes = password.getBytes(); for (i = password.length(); i > 0; i >>= 1) { if ((i & 1) == 1) { hash1.update((byte) 0); } else { hash1.update(passwordBytes, 0, 1); } } result = new StringBuffer(magic); result.append(salt); result.append("$"); digest = hash1.digest(); saltBytes = salt.getBytes(); for (i = 0; i < 1000; i++) { hash2.reset(); if ((i & 1) == 1) { hash2.update(passwordBytes); } else { hash2.update(digest); } if (i % 3 != 0) { hash2.update(saltBytes); } if (i % 7 != 0) { hash2.update(passwordBytes); } if ((i & 1) != 0) { hash2.update(digest); } else { hash2.update(passwordBytes); } digest = hash2.digest(); } value = ((digest[0] & 0xff) << 16) | ((digest[6] & 0xff) << 8) | (digest[12] & 0xff); result.append(to64(value, 4)); value = ((digest[1] & 0xff) << 16) | ((digest[7] & 0xff) << 8) | (digest[13] & 0xff); result.append(to64(value, 4)); value = ((digest[2] & 0xff) << 16) | ((digest[8] & 0xff) << 8) | (digest[14] & 0xff); result.append(to64(value, 4)); value = ((digest[3] & 0xff) << 16) | ((digest[9] & 0xff) << 8) | (digest[15] & 0xff); result.append(to64(value, 4)); value = ((digest[4] & 0xff) << 16) | ((digest[10] & 0xff) << 8) | (digest[5] & 0xff); result.append(to64(value, 4)); value = digest[11] & 0xff; result.append(to64(value, 2)); return result.toString(); } | public static String hash(String plaintext) { if (plaintext == null) { return ""; } MessageDigest md = null; try { md = MessageDigest.getInstance("SHA1"); md.update(plaintext.getBytes("UTF-8")); } catch (Exception e) { } return new String(Base64.encodeBase64(md.digest())); } | 886,113 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public he3Decode(String in_file) { try { File out = new File(in_file + extension); File in = new File(in_file); int file_size = (int) in.length(); FileInputStream in_stream = new FileInputStream(in_file); out.createNewFile(); FileOutputStream out_stream = new FileOutputStream(out.getName()); ByteArrayOutputStream os = new ByteArrayOutputStream(file_size); byte byte_arr[] = new byte[8]; int buff_size = byte_arr.length; int _fetched = 0; int _chars_read = 0; System.out.println(appname + ".\n" + "decoding: " + in_file + "\n" + "decoding to: " + in_file + extension + "\n" + "\nreading: "); while (_fetched < file_size) { _chars_read = in_stream.read(byte_arr, 0, buff_size); if (_chars_read == -1) break; os.write(byte_arr, 0, _chars_read); _fetched += _chars_read; System.out.print("*"); } System.out.print("\ndecoding: "); out_stream.write(_decode((ByteArrayOutputStream) os)); System.out.print("complete\n\n"); } catch (java.io.FileNotFoundException fnfEx) { System.err.println("Exception: " + fnfEx.getMessage()); } catch (java.io.IOException ioEx) { System.err.println("Exception: " + ioEx.getMessage()); } } | 886,114 |
1 | private static String deviceIdFromCombined_Device_ID(Context context) { StringBuilder builder = new StringBuilder(); builder.append(deviceIdFromIMEI(context)); builder.append(deviceIdFromPseudo_Unique_Id()); builder.append(deviceIdFromAndroidId(context)); builder.append(deviceIdFromWLAN_MAC_Address(context)); builder.append(deviceIdFromBT_MAC_Address(context)); String m_szLongID = builder.toString(); MessageDigest m = null; try { m = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } m.update(m_szLongID.getBytes(), 0, m_szLongID.length()); byte p_md5Data[] = m.digest(); String m_szUniqueID = new String(); for (int i = 0; i < p_md5Data.length; i++) { int b = (0xFF & p_md5Data[i]); if (b <= 0xF) m_szUniqueID += "0"; m_szUniqueID += Integer.toHexString(b); } return m_szUniqueID; } | public static final String md5(final String s) { try { MessageDigest digest = java.security.MessageDigest.getInstance("MD5"); digest.update(s.getBytes()); byte messageDigest[] = digest.digest(); StringBuffer hexString = new StringBuffer(); for (int i = 0; i < messageDigest.length; i++) { String h = Integer.toHexString(0xFF & messageDigest[i]); while (h.length() < 2) { h = "0" + h; } hexString.append(h); } return hexString.toString(); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } return ""; } | 886,115 |
0 | public String control(final String allOptions) throws SQLException { connect(); final Statement stmt = connection.createStatement(); final ResultSet rst1 = stmt.executeQuery("SELECT versionId FROM versions WHERE version='" + Concrete.version() + "'"); final long versionId; if (rst1.next()) { versionId = rst1.getInt(1); } else { disconnect(); return ""; } rst1.close(); final MessageDigest msgDigest; try { msgDigest = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e1) { logger.throwing(SQLExecutionController.class.getSimpleName(), "control", e1); disconnect(); return ""; } msgDigest.update(allOptions.getBytes()); final ResultSet rst2 = stmt.executeQuery("SELECT configId FROM configs WHERE md5='" + Concrete.md5(msgDigest.digest()) + "'"); final long configId; if (rst2.next()) { configId = rst2.getInt(1); } else { disconnect(); return ""; } rst2.close(); final ResultSet rst4 = stmt.executeQuery("SELECT problems.md5 FROM executions " + "LEFT JOIN problems ON executions.problemId = problems.problemId WHERE " + "configId=" + configId + " AND versionId=" + versionId); final StringBuilder stb = new StringBuilder(); while (rst4.next()) { stb.append(rst4.getString(1)).append('\n'); } rst4.close(); stmt.close(); return stb.toString(); } | public void run() { try { if (useStream || inputStream != null) { InputStream inputStream = null; if (LoadDocumentOperation.this.inputStream != null) inputStream = LoadDocumentOperation.this.inputStream; else inputStream = url.openStream(); if (frame != null) document = officeApplication.getDocumentService().loadDocument(frame, inputStream, documentDescriptor); else document = officeApplication.getDocumentService().loadDocument(inputStream, documentDescriptor); try { inputStream.close(); } catch (Throwable throwable) { } } else { if (frame != null) document = officeApplication.getDocumentService().loadDocument(frame, url.toString(), documentDescriptor); else document = officeApplication.getDocumentService().loadDocument(url.toString(), documentDescriptor); } done = true; } catch (Exception exception) { this.exception = exception; } catch (ThreadDeath threadDeath) { } } | 886,116 |
0 | private void loadProperties() { if (properties == null) { properties = new Properties(); try { URL url = getClass().getResource(propsFile); properties.load(url.openStream()); } catch (IOException ioe) { ioe.printStackTrace(); } } } | public static String SHA1(String text) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md; md = MessageDigest.getInstance("SHA-1"); byte[] sha1hash = new byte[40]; md.update(text.getBytes("iso-8859-1"), 0, text.length()); sha1hash = md.digest(); return convertToHex(sha1hash); } | 886,117 |
0 | public void saveDownloadFiles(List downloadFiles) throws SQLException { Connection conn = AppLayerDatabase.getInstance().getPooledConnection(); try { conn.setAutoCommit(false); Statement s = conn.createStatement(); s.executeUpdate("DELETE FROM DOWNLOADFILES"); s.close(); s = null; PreparedStatement ps = conn.prepareStatement("INSERT INTO DOWNLOADFILES " + "(name,targetpath,size,fnkey,enabled,state,downloadaddedtime,downloadstartedtime,downloadfinishedtime," + "retries,lastdownloadstoptime,gqid,filelistfilesha) VALUES (?,?,?,?,?,?,?,?,?,?,?,?,?)"); for (Iterator i = downloadFiles.iterator(); i.hasNext(); ) { FrostDownloadItem dlItem = (FrostDownloadItem) i.next(); int ix = 1; ps.setString(ix++, dlItem.getFilename()); ps.setString(ix++, dlItem.getTargetPath()); ps.setLong(ix++, (dlItem.getFileSize() == null ? 0 : dlItem.getFileSize().longValue())); ps.setString(ix++, dlItem.getKey()); ps.setBoolean(ix++, (dlItem.isEnabled() == null ? true : dlItem.isEnabled().booleanValue())); ps.setInt(ix++, dlItem.getState()); ps.setLong(ix++, dlItem.getDownloadAddedTime()); ps.setLong(ix++, dlItem.getDownloadStartedTime()); ps.setLong(ix++, dlItem.getDownloadFinishedTime()); ps.setInt(ix++, dlItem.getRetries()); ps.setLong(ix++, dlItem.getLastDownloadStopTime()); ps.setString(ix++, dlItem.getGqIdentifier()); ps.setString(ix++, dlItem.getFileListFileObject() == null ? null : dlItem.getFileListFileObject().getSha()); ps.executeUpdate(); } ps.close(); conn.commit(); conn.setAutoCommit(true); } catch (Throwable t) { logger.log(Level.SEVERE, "Exception during save", t); try { conn.rollback(); } catch (Throwable t1) { logger.log(Level.SEVERE, "Exception during rollback", t1); } try { conn.setAutoCommit(true); } catch (Throwable t1) { } } finally { AppLayerDatabase.getInstance().givePooledConnection(conn); } } | public Object run() { if (type == GET_THEME_DIR) { String sep = File.separator; String[] dirs = new String[] { userHome + sep + ".themes", System.getProperty("swing.metacitythemedir"), "/usr/share/themes", "/usr/gnome/share/themes", "/opt/gnome2/share/themes" }; URL themeDir = null; for (int i = 0; i < dirs.length; i++) { if (dirs[i] == null) { continue; } File dir = new File(dirs[i] + sep + arg + sep + "metacity-1"); if (new File(dir, "metacity-theme-1.xml").canRead()) { try { themeDir = dir.toURL(); } catch (MalformedURLException ex) { themeDir = null; } break; } } if (themeDir == null) { String filename = "resources/metacity/" + arg + "/metacity-1/metacity-theme-1.xml"; URL url = getClass().getResource(filename); if (url != null) { String str = url.toString(); try { themeDir = new URL(str.substring(0, str.lastIndexOf('/')) + "/"); } catch (MalformedURLException ex) { themeDir = null; } } } return themeDir; } else if (type == GET_USER_THEME) { try { userHome = System.getProperty("user.home"); String theme = System.getProperty("swing.metacitythemename"); if (theme != null) { return theme; } URL url = new URL(new File(userHome).toURL(), ".gconf/apps/metacity/general/%25gconf.xml"); Reader reader = new InputStreamReader(url.openStream(), "ISO-8859-1"); char[] buf = new char[1024]; StringBuffer strBuf = new StringBuffer(); int n; while ((n = reader.read(buf)) >= 0) { strBuf.append(buf, 0, n); } reader.close(); String str = strBuf.toString(); if (str != null) { String strLowerCase = str.toLowerCase(); int i = strLowerCase.indexOf("<entry name=\"theme\""); if (i >= 0) { i = strLowerCase.indexOf("<stringvalue>", i); if (i > 0) { i += "<stringvalue>".length(); int i2 = str.indexOf("<", i); return str.substring(i, i2); } } } } catch (MalformedURLException ex) { } catch (IOException ex) { } return null; } else if (type == GET_IMAGE) { return new ImageIcon((URL) arg).getImage(); } else { return null; } } | 886,118 |
0 | private void getInfoFromXML() { final ProgressDialog dialog = ProgressDialog.show(this, "", getString(R.string.loading), true, true); setProgressBarIndeterminateVisibility(true); Thread t3 = new Thread() { public void run() { waiting(200); try { URL url = new URL(urlAddress); SAXParserFactory spf = SAXParserFactory.newInstance(); SAXParser sp = spf.newSAXParser(); XMLReader xr = sp.getXMLReader(); XMLHandlerSingleArtist myXMLHandler = new XMLHandlerSingleArtist(); xr.setContentHandler(myXMLHandler); xr.parse(new InputSource(url.openStream())); artist = myXMLHandler.artist; emusicURL = myXMLHandler.url; bio = myXMLHandler.bio; born = myXMLHandler.born; death = myXMLHandler.death; decade = myXMLHandler.decade; rating = myXMLHandler.rating; statuscode = myXMLHandler.statuscode; if (statuscode != 200 && statuscode != 206) { throw new Exception(); } handlerSetContent.sendEmptyMessage(0); } catch (Exception e) { headerTextView.post(new Runnable() { public void run() { headerTextView.setText(R.string.couldnt_get_artist_info); } }); } dialog.dismiss(); handlerDoneLoading.sendEmptyMessage(0); } }; t3.start(); } | public static String getServiceContent(String serviceURL) throws IOException { URL url = new URL(serviceURL); HttpURLConnection connection = (HttpURLConnection) url.openConnection(); connection.setRequestMethod("GET"); connection.connect(); int code = connection.getResponseCode(); if (code == HttpURLConnection.HTTP_OK) { InputStream is = connection.getInputStream(); byte[] buffer = null; String stringBuffer = ""; buffer = new byte[4096]; int totBytes, bytes, sumBytes = 0; totBytes = connection.getContentLength(); while (true) { bytes = is.read(buffer); if (bytes <= 0) break; stringBuffer = stringBuffer + new String(buffer); } return stringBuffer; } return null; } | 886,119 |
0 | private void getRandomGUID(boolean secure) { MessageDigest md5 = null; StringBuffer sbValueBeforeMD5 = new StringBuffer(); try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { System.out.println("Error: " + e); } try { long time = System.currentTimeMillis(); long rand = 0; if (secure) { rand = mySecureRand.nextLong(); } else { rand = myRand.nextLong(); } sbValueBeforeMD5.append(s_id); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(time)); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(rand)); valueBeforeMD5 = sbValueBeforeMD5.toString(); md5.update(valueBeforeMD5.getBytes()); byte[] array = md5.digest(); StringBuffer sb = new StringBuffer(); for (int j = 0; j < array.length; ++j) { int b = array[j] & 0xFF; if (b < 0x10) sb.append('0'); sb.append(Integer.toHexString(b)); } valueAfterMD5 = sb.toString(); } catch (Exception e) { System.out.println("Error:" + e); } } | @Override protected final Boolean doInBackground(Void... v) { Bitmap bmp = ((BitmapDrawable) ((ImageView) findViewById(R.id.post_img)).getDrawable()).getBitmap(); HttpURLConnection con; try { URL url = new URL(POST_URL); con = (HttpURLConnection) url.openConnection(); con.setRequestMethod("POST"); con.setDoOutput(true); con.setRequestProperty("Accept-Language", "multipart/form-data"); con.setRequestProperty("X-RAW", "true"); } catch (MalformedURLException e) { e.printStackTrace(); finish(); return false; } catch (IOException e) { e.printStackTrace(); finish(); return false; } ByteArrayOutputStream bos = new ByteArrayOutputStream(); bmp.compress(CompressFormat.JPEG, 100, bos); OutputStream os = null; try { os = con.getOutputStream(); os.write(bos.toByteArray()); os.flush(); os.close(); } catch (IOException e) { e.printStackTrace(); try { os.close(); } catch (IOException e1) { e1.printStackTrace(); } return false; } InputStream is = null; BufferedReader reader; try { is = con.getInputStream(); reader = new BufferedReader(new InputStreamReader(is)); is.close(); } catch (IOException e) { e.printStackTrace(); try { is.close(); } catch (IOException e1) { e1.printStackTrace(); } return false; } String s; try { while ((s = reader.readLine()) != null) { Log.v(TAG, s); } } catch (IOException e) { e.printStackTrace(); } finally { try { reader.close(); } catch (IOException e) { e.printStackTrace(); } } return true; } | 886,120 |
0 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | private int renumberOrderBy(long tableID) throws SnapInException { int count = 0; Connection con = null; Statement stmt = null; ResultSet rs = null; try { con = getDataSource().getConnection(); con.setAutoCommit(false); stmt = con.createStatement(); StringBuffer query = new StringBuffer(); query.append("SELECT ").append(DatabaseConstants.TableFieldName_JV_FIELDBEHAVIOR_ID).append(" FROM ").append(DatabaseConstants.TableName_JV_FIELDBEHAVIOR).append(" WHERE ").append(DatabaseConstants.TableFieldName_JV_FIELDBEHAVIOR_TABLEID).append(" = ").append(tableID).append(" ORDER BY ").append(DatabaseConstants.TableFieldName_JV_FIELDBEHAVIOR_ORDERBY); Vector rowIDVector = new Vector(); rs = stmt.executeQuery(query.toString()); while (rs.next()) { count++; rowIDVector.add(rs.getLong(DatabaseConstants.TableFieldName_JV_FIELDBEHAVIOR_ID) + ""); } StringBuffer updateString = new StringBuffer(); updateString.append("UPDATE ").append(DatabaseConstants.TableName_JV_FIELDBEHAVIOR).append(" SET ").append(DatabaseConstants.TableFieldName_JV_FIELDBEHAVIOR_ORDERBY).append(" = ? WHERE ").append(DatabaseConstants.TableFieldName_JV_FIELDBEHAVIOR_ID).append(" = ?"); PreparedStatement pstmt = con.prepareStatement(updateString.toString()); int orderByValue = ORDERBY_BY_DELTA_VALUE; Enumeration en = rowIDVector.elements(); while (en.hasMoreElements()) { pstmt.setInt(1, orderByValue); pstmt.setString(2, en.nextElement().toString()); orderByValue += ORDERBY_BY_DELTA_VALUE; pstmt.executeUpdate(); } con.setAutoCommit(true); if (pstmt != null) { pstmt.close(); } } catch (java.sql.SQLException e) { if (con == null) { logger.error("java.sql.SQLException", e); } else { try { logger.error("Transaction is being rolled back."); con.rollback(); con.setAutoCommit(true); } catch (java.sql.SQLException e2) { logger.error("java.sql.SQLException", e2); } } } catch (Exception e) { logger.error("Error occured during RenumberOrderBy", e); } finally { getDataSourceHelper().releaseResources(con, stmt, rs); } return count; } | 886,121 |
0 | public Coordinates geocode(Address address) { Coordinates geocoordinates = null; String web = YAHOOURL + "?appid=" + applicationId + "&location=" + createLocation(address); URL url; try { url = new URL(web); InputStream in = url.openStream(); geocoordinates = YahooXmlReader.readConfig(in); in.close(); } catch (MalformedURLException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } return geocoordinates; } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 886,122 |
1 | public static void copyFile(File sourceFile, String toDir, boolean create, boolean overwrite) throws FileNotFoundException, IOException { FileInputStream source = null; FileOutputStream destination = null; byte[] buffer; int bytes_read; File toFile = new File(toDir); if (create && !toFile.exists()) toFile.mkdirs(); if (toFile.exists()) { File destFile = new File(toDir + "/" + sourceFile.getName()); try { if (!destFile.exists() || overwrite) { source = new FileInputStream(sourceFile); destination = new FileOutputStream(destFile); buffer = new byte[1024]; while (true) { bytes_read = source.read(buffer); if (bytes_read == -1) break; destination.write(buffer, 0, bytes_read); } } } catch (Exception exx) { exx.printStackTrace(); } finally { if (source != null) try { source.close(); } catch (IOException e) { } if (destination != null) try { destination.close(); } catch (IOException e) { } } } } | public void doCompress(File[] files, File out, List<String> excludedKeys) { Map<String, File> map = new HashMap<String, File>(); String parent = FilenameUtils.getBaseName(out.getName()); for (File f : files) { CompressionUtil.list(f, parent, map, excludedKeys); } if (!map.isEmpty()) { FileOutputStream fos = null; ArchiveOutputStream aos = null; InputStream is = null; try { fos = new FileOutputStream(out); aos = getArchiveOutputStream(fos); for (Map.Entry<String, File> entry : map.entrySet()) { File file = entry.getValue(); ArchiveEntry ae = getArchiveEntry(file, entry.getKey()); aos.putArchiveEntry(ae); if (file.isFile()) { IOUtils.copy(is = new FileInputStream(file), aos); IOUtils.closeQuietly(is); is = null; } aos.closeArchiveEntry(); } aos.finish(); } catch (IOException ex) { ex.printStackTrace(); } finally { IOUtils.closeQuietly(is); IOUtils.closeQuietly(aos); IOUtils.closeQuietly(fos); } } } | 886,123 |
0 | public static String SHA1(String text) throws NoSuchAlgorithmException { MessageDigest md = MessageDigest.getInstance("SHA-1"); md.update(text.getBytes()); byte byteData[] = md.digest(); StringBuilder sb = new StringBuilder(); for (int i = 0; i < byteData.length; i++) { sb.append(Integer.toString((byteData[i] & 0xff) + 0x100, 16).substring(1)); } StringBuilder hexString = new StringBuilder(); for (int i = 0; i < byteData.length; i++) { String hex = Integer.toHexString(0xff & byteData[i]); if (hex.length() == 1) hexString.append('0'); hexString.append(hex); } return hexString.toString(); } | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 886,124 |
1 | public ActionResponse executeAction(ActionRequest request) throws Exception { BufferedReader in = null; try { CurrencyEntityManager em = new CurrencyEntityManager(); String id = (String) request.getProperty("ID"); CurrencyMonitor cm = getCurrencyMonitor(em, Long.valueOf(id)); String code = cm.getCode(); if (code == null || code.length() == 0) code = DEFAULT_SYMBOL; String tmp = URL.replace("@", code); ActionResponse resp = new ActionResponse(); URL url = new URL(tmp); HttpURLConnection conn = (HttpURLConnection) url.openConnection(); int status = conn.getResponseCode(); if (status == 200) { in = new BufferedReader(new InputStreamReader(conn.getInputStream())); StringBuilder value = new StringBuilder(); while (true) { String line = in.readLine(); if (line == null) break; value.append(line); } cm.setLastUpdateValue(new BigDecimal(value.toString())); cm.setLastUpdateTs(new Date()); em.updateCurrencyMonitor(cm); resp.addResult("CURRENCYMONITOR", cm); } else { resp.setErrorCode(ActionResponse.GENERAL_ERROR); resp.setErrorMessage("HTTP Error [" + status + "]"); } return resp; } catch (Exception e) { String st = MiscUtils.stackTrace2String(e); logger.error(st); throw e; } finally { if (in != null) { in.close(); } } } | public static String getTextFromUrl(final String url) { InputStreamReader inputStreamReader = null; BufferedReader bufferedReader = null; try { final StringBuilder result = new StringBuilder(); inputStreamReader = new InputStreamReader(new URL(url).openStream()); bufferedReader = new BufferedReader(inputStreamReader); String line; while ((line = bufferedReader.readLine()) != null) { result.append(HtmlUtil.quoteHtml(line)).append("\r"); } return result.toString(); } catch (final IOException exception) { return exception.getMessage(); } finally { InputOutputUtil.close(bufferedReader); InputOutputUtil.close(inputStreamReader); } } | 886,125 |
0 | @Test public void testCustomerResource() throws Exception { DefaultHttpClient client = new DefaultHttpClient(); System.out.println("**** CustomerResource No Query params ***"); HttpGet get = new HttpGet("http://localhost:9095/customers"); HttpResponse response = client.execute(get); Assert.assertEquals(200, response.getStatusLine().getStatusCode()); BufferedReader reader = new BufferedReader(new InputStreamReader(response.getEntity().getContent())); String line = reader.readLine(); while (line != null) { System.out.println(line); line = reader.readLine(); } System.out.println("**** CustomerResource With Query params ***"); get = new HttpGet("http://localhost:9095/customers?start=1&size=3"); response = client.execute(get); Assert.assertEquals(200, response.getStatusLine().getStatusCode()); reader = new BufferedReader(new InputStreamReader(response.getEntity().getContent())); line = reader.readLine(); while (line != null) { System.out.println(line); line = reader.readLine(); } System.out.println("**** CustomerResource With UriInfo and Query params ***"); get = new HttpGet("http://localhost:9095/customers/uriinfo?start=2&size=2"); response = client.execute(get); Assert.assertEquals(200, response.getStatusLine().getStatusCode()); reader = new BufferedReader(new InputStreamReader(response.getEntity().getContent())); line = reader.readLine(); while (line != null) { System.out.println(line); line = reader.readLine(); } } | private boolean addBookmark0(Bookmark bookmark, BookmarkFolder folder, PreparedStatement preparedStatement) throws SQLException { Object[] bindVariables = new Object[8]; int[] types = new int[8]; types[0] = Types.BOOLEAN; types[1] = Types.TIMESTAMP; types[2] = Types.TIMESTAMP; types[3] = Types.VARCHAR; types[4] = Types.VARCHAR; types[5] = Types.BIGINT; types[6] = Types.VARCHAR; types[7] = Types.VARCHAR; bindVariables[0] = Boolean.valueOf(bookmark.isFavorite()); Date time = bookmark.getCreationTime(); bindVariables[1] = new Timestamp(time == null ? System.currentTimeMillis() : time.getTime()); time = bookmark.getLastAccess(); bindVariables[2] = new Timestamp(time == null ? System.currentTimeMillis() : time.getTime()); bindVariables[3] = bookmark.getName(); bindVariables[4] = bookmark.getCommandText(); bindVariables[5] = new Long(bookmark.getUseCount()); bindVariables[6] = folder == null ? bookmark.getPath() : folder.getPath(); ColorLabel colorLabel = bookmark.getColorLabel(); bindVariables[7] = colorLabel == null ? null : colorLabel.name(); boolean doBatch = (preparedStatement != null); boolean hasError = true; embeddedConnection.setAutoCommit(false); PreparedStatement statement = null; try { if (preparedStatement == null) { statement = embeddedConnection.prepareStatement(BOOKMARK_INSERT); } else { statement = preparedStatement; } for (int i = 0; i < bindVariables.length; i++) { if (bindVariables[i] == null) { statement.setNull(i + 1, types[i]); } else { statement.setObject(i + 1, bindVariables[i]); } } try { int affectedCount = statement.executeUpdate(); long identityValue = getInsertedPrimaryKey(); bookmark.setId(identityValue); addBindVariables(bookmark); hasError = false; return affectedCount == 1; } catch (SQLException exception) { if (CONSTRAINT_VIOLATION.equals(exception.getSQLState())) { return false; } throw exception; } } finally { if (hasError) { embeddedConnection.rollback(); } else { embeddedConnection.commit(); } embeddedConnection.setAutoCommit(true); if (preparedStatement != null) { if (!doBatch) { try { preparedStatement.close(); } catch (SQLException ignored) { } } else if (doBatch) { preparedStatement.clearParameters(); preparedStatement.clearWarnings(); } } } } | 886,126 |
0 | private void gravaOp(Vector<?> op) { PreparedStatement ps = null; String sql = null; ResultSet rs = null; int seqop = 0; Date dtFabrOP = null; try { sql = "SELECT MAX(SEQOP) FROM PPOP WHERE CODEMP=? AND CODFILIAL=? AND CODOP=?"; ps = con.prepareStatement(sql); ps.setInt(1, Aplicativo.iCodEmp); ps.setInt(2, ListaCampos.getMasterFilial("PPOP")); ps.setInt(3, txtCodOP.getVlrInteger().intValue()); rs = ps.executeQuery(); if (rs.next()) { seqop = rs.getInt(1) + 1; } rs.close(); ps.close(); con.commit(); sql = "SELECT DTFABROP FROM PPOP WHERE CODEMP=? AND CODFILIAL=? AND CODOP=? AND SEQOP=?"; ps = con.prepareStatement(sql); ps.setInt(1, Aplicativo.iCodEmp); ps.setInt(2, ListaCampos.getMasterFilial("PPOP")); ps.setInt(3, txtCodOP.getVlrInteger().intValue()); ps.setInt(4, txtSeqOP.getVlrInteger().intValue()); rs = ps.executeQuery(); if (rs.next()) { dtFabrOP = rs.getDate(1); } rs.close(); ps.close(); con.commit(); sql = "INSERT INTO PPOP (CODEMP,CODFILIAL,CODOP,SEQOP,CODEMPPD,CODFILIALPD,CODPROD,SEQEST,DTFABROP," + "QTDPREVPRODOP,QTDFINALPRODOP,DTVALIDPDOP,CODEMPLE,CODFILIALLE,CODLOTE,CODEMPTM,CODFILIALTM,CODTIPOMOV," + "CODEMPAX,CODFILIALAX,CODALMOX,CODEMPOPM,CODFILIALOPM,CODOPM,SEQOPM,QTDDISTIOP,QTDSUGPRODOP)" + " VALUES (?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?)"; ps = con.prepareStatement(sql); ps.setInt(1, Aplicativo.iCodEmp); ps.setInt(2, ListaCampos.getMasterFilial("PPOP")); ps.setInt(3, txtCodOP.getVlrInteger().intValue()); ps.setInt(4, seqop); ps.setInt(5, Aplicativo.iCodEmp); ps.setInt(6, ListaCampos.getMasterFilial("PPESTRUTURA")); ps.setInt(7, ((Integer) op.elementAt(4)).intValue()); ps.setInt(8, ((Integer) op.elementAt(6)).intValue()); ps.setDate(9, dtFabrOP); ps.setFloat(10, ((BigDecimal) op.elementAt(7)).floatValue()); ps.setFloat(11, 0); ps.setDate(12, (Funcoes.strDateToSqlDate((String) op.elementAt(11)))); ps.setInt(13, Aplicativo.iCodEmp); ps.setInt(14, ListaCampos.getMasterFilial("EQLOTE")); ps.setString(15, ((String) op.elementAt(10))); ps.setInt(16, Aplicativo.iCodEmp); ps.setInt(17, ListaCampos.getMasterFilial("EQTIPOMOV")); ps.setInt(18, buscaTipoMov()); ps.setInt(19, ((Integer) op.elementAt(13)).intValue()); ps.setInt(20, ((Integer) op.elementAt(14)).intValue()); ps.setInt(21, ((Integer) op.elementAt(12)).intValue()); ps.setInt(22, Aplicativo.iCodEmp); ps.setInt(23, ListaCampos.getMasterFilial("PPOP")); ps.setInt(24, txtCodOP.getVlrInteger().intValue()); ps.setInt(25, txtSeqOP.getVlrInteger().intValue()); ps.setFloat(26, ((BigDecimal) op.elementAt(9)).floatValue()); ps.setFloat(27, ((BigDecimal) op.elementAt(7)).floatValue()); ps.executeUpdate(); ps.close(); con.commit(); geraRMA(seqop); } catch (SQLException e) { Funcoes.mensagemErro(null, "Erro ao gerar OP's de distribui��o!\n" + e.getMessage()); try { con.rollback(); } catch (SQLException eb) { } } } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 886,127 |
0 | public static void copyFile(String source, String destination, TimeSlotTracker timeSlotTracker) { LOG.info("copying [" + source + "] to [" + destination + "]"); BufferedInputStream sourceStream = null; BufferedOutputStream destStream = null; try { File destinationFile = new File(destination); if (destinationFile.exists()) { destinationFile.delete(); } sourceStream = new BufferedInputStream(new FileInputStream(source)); destStream = new BufferedOutputStream(new FileOutputStream(destinationFile)); int readByte; while ((readByte = sourceStream.read()) > 0) { destStream.write(readByte); } Object[] arg = { destinationFile.getName() }; String msg = timeSlotTracker.getString("datasource.xml.copyFile.copied", arg); LOG.fine(msg); } catch (Exception e) { Object[] expArgs = { e.getMessage() }; String expMsg = timeSlotTracker.getString("datasource.xml.copyFile.exception", expArgs); timeSlotTracker.errorLog(expMsg); timeSlotTracker.errorLog(e); } finally { try { if (destStream != null) { destStream.close(); } if (sourceStream != null) { sourceStream.close(); } } catch (Exception e) { Object[] expArgs = { e.getMessage() }; String expMsg = timeSlotTracker.getString("datasource.xml.copyFile.exception", expArgs); timeSlotTracker.errorLog(expMsg); timeSlotTracker.errorLog(e); } } } | public void write(PDDocument doc) throws COSVisitorException { document = doc; SecurityHandler securityHandler = document.getSecurityHandler(); if (securityHandler != null) { try { securityHandler.prepareDocumentForEncryption(document); this.willEncrypt = true; } catch (IOException e) { throw new COSVisitorException(e); } catch (CryptographyException e) { throw new COSVisitorException(e); } } else { this.willEncrypt = false; } COSDocument cosDoc = document.getDocument(); COSDictionary trailer = cosDoc.getTrailer(); COSArray idArray = (COSArray) trailer.getDictionaryObject("ID"); if (idArray == null) { try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(Long.toString(System.currentTimeMillis()).getBytes()); COSDictionary info = (COSDictionary) trailer.getDictionaryObject("Info"); if (info != null) { Iterator values = info.getValues().iterator(); while (values.hasNext()) { md.update(values.next().toString().getBytes()); } } idArray = new COSArray(); COSString id = new COSString(md.digest()); idArray.add(id); idArray.add(id); trailer.setItem("ID", idArray); } catch (NoSuchAlgorithmException e) { throw new COSVisitorException(e); } } cosDoc.accept(this); } | 886,128 |
0 | private final long test(final boolean applyFilter, final int executionCount) throws NoSuchAlgorithmException, NoSuchPaddingException, FileNotFoundException, IOException, RuleLoadingException { final boolean stripHtmlEnabled = true; final boolean injectSecretTokensEnabled = true; final boolean encryptQueryStringsEnabled = true; final boolean protectParamsAndFormsEnabled = true; final boolean applyExtraProtectionForDisabledFormFields = true; final boolean applyExtraProtectionForReadonlyFormFields = false; final boolean applyExtraProtectionForRequestParamValueCount = false; final ContentInjectionHelper helper = new ContentInjectionHelper(); final RuleFileLoader ruleFileLoaderModificationExcludes = new ClasspathZipRuleFileLoader(); ruleFileLoaderModificationExcludes.setPath(WebCastellumFilter.MODIFICATION_EXCLUDES_DEFAULT); final ContentModificationExcludeDefinitionContainer containerModExcludes = new ContentModificationExcludeDefinitionContainer(ruleFileLoaderModificationExcludes); containerModExcludes.parseDefinitions(); helper.setContentModificationExcludeDefinitions(containerModExcludes); final AttackHandler attackHandler = new AttackHandler(null, 123, 600000, 100000, 300000, 300000, null, "MOCK", false, false, 0, false, false, Pattern.compile("sjghggfakgfjagfgajgfjasgfs"), Pattern.compile("sjghggfakgfjagfgajgfjasgfs"), true); final SessionCreationTracker sessionCreationTracker = new SessionCreationTracker(attackHandler, 0, 600000, 300000, 0, "", "", "", ""); final RequestWrapper request = new RequestWrapper(new RequestMock(), helper, sessionCreationTracker, "123.456.789.000", false, true, true); final RuleFileLoader ruleFileLoaderResponseModifications = new ClasspathZipRuleFileLoader(); ruleFileLoaderResponseModifications.setPath(WebCastellumFilter.RESPONSE_MODIFICATIONS_DEFAULT); final ResponseModificationDefinitionContainer container = new ResponseModificationDefinitionContainer(ruleFileLoaderResponseModifications); container.parseDefinitions(); final ResponseModificationDefinition[] responseModificationDefinitions = downCast(container.getAllEnabledRequestDefinitions()); final List tmpPatternsToExcludeCompleteTag = new ArrayList(responseModificationDefinitions.length); final List tmpPatternsToExcludeCompleteScript = new ArrayList(responseModificationDefinitions.length); final List tmpPatternsToExcludeLinksWithinScripts = new ArrayList(responseModificationDefinitions.length); final List tmpPatternsToExcludeLinksWithinTags = new ArrayList(responseModificationDefinitions.length); final List tmpPatternsToCaptureLinksWithinScripts = new ArrayList(responseModificationDefinitions.length); final List tmpPatternsToCaptureLinksWithinTags = new ArrayList(responseModificationDefinitions.length); final List tmpPrefiltersToExcludeCompleteTag = new ArrayList(responseModificationDefinitions.length); final List tmpPrefiltersToExcludeCompleteScript = new ArrayList(responseModificationDefinitions.length); final List tmpPrefiltersToExcludeLinksWithinScripts = new ArrayList(responseModificationDefinitions.length); final List tmpPrefiltersToExcludeLinksWithinTags = new ArrayList(responseModificationDefinitions.length); final List tmpPrefiltersToCaptureLinksWithinScripts = new ArrayList(responseModificationDefinitions.length); final List tmpPrefiltersToCaptureLinksWithinTags = new ArrayList(responseModificationDefinitions.length); final List tmpGroupNumbersToCaptureLinksWithinScripts = new ArrayList(responseModificationDefinitions.length); final List tmpGroupNumbersToCaptureLinksWithinTags = new ArrayList(responseModificationDefinitions.length); for (int i = 0; i < responseModificationDefinitions.length; i++) { final ResponseModificationDefinition responseModificationDefinition = responseModificationDefinitions[i]; if (responseModificationDefinition.isMatchesScripts()) { tmpPatternsToExcludeCompleteScript.add(responseModificationDefinition.getScriptExclusionPattern()); tmpPrefiltersToExcludeCompleteScript.add(responseModificationDefinition.getScriptExclusionPrefilter()); tmpPatternsToExcludeLinksWithinScripts.add(responseModificationDefinition.getUrlExclusionPattern()); tmpPrefiltersToExcludeLinksWithinScripts.add(responseModificationDefinition.getUrlExclusionPrefilter()); tmpPatternsToCaptureLinksWithinScripts.add(responseModificationDefinition.getUrlCapturingPattern()); tmpPrefiltersToCaptureLinksWithinScripts.add(responseModificationDefinition.getUrlCapturingPrefilter()); tmpGroupNumbersToCaptureLinksWithinScripts.add(ServerUtils.convertSimpleToObjectArray(responseModificationDefinition.getCapturingGroupNumbers())); } if (responseModificationDefinition.isMatchesTags()) { tmpPatternsToExcludeCompleteTag.add(responseModificationDefinition.getTagExclusionPattern()); tmpPrefiltersToExcludeCompleteTag.add(responseModificationDefinition.getTagExclusionPrefilter()); tmpPatternsToExcludeLinksWithinTags.add(responseModificationDefinition.getUrlExclusionPattern()); tmpPrefiltersToExcludeLinksWithinTags.add(responseModificationDefinition.getUrlExclusionPrefilter()); tmpPatternsToCaptureLinksWithinTags.add(responseModificationDefinition.getUrlCapturingPattern()); tmpPrefiltersToCaptureLinksWithinTags.add(responseModificationDefinition.getUrlCapturingPrefilter()); tmpGroupNumbersToCaptureLinksWithinTags.add(ServerUtils.convertSimpleToObjectArray(responseModificationDefinition.getCapturingGroupNumbers())); } } final Matcher[] matchersToExcludeCompleteTag = ServerUtils.convertListOfPatternToArrayOfMatcher(tmpPatternsToExcludeCompleteTag); final Matcher[] matchersToExcludeCompleteScript = ServerUtils.convertListOfPatternToArrayOfMatcher(tmpPatternsToExcludeCompleteScript); final Matcher[] matchersToExcludeLinksWithinScripts = ServerUtils.convertListOfPatternToArrayOfMatcher(tmpPatternsToExcludeLinksWithinScripts); final Matcher[] matchersToExcludeLinksWithinTags = ServerUtils.convertListOfPatternToArrayOfMatcher(tmpPatternsToExcludeLinksWithinTags); final Matcher[] matchersToCaptureLinksWithinScripts = ServerUtils.convertListOfPatternToArrayOfMatcher(tmpPatternsToCaptureLinksWithinScripts); final Matcher[] matchersToCaptureLinksWithinTags = ServerUtils.convertListOfPatternToArrayOfMatcher(tmpPatternsToCaptureLinksWithinTags); final WordDictionary[] prefiltersToExcludeCompleteTag = (WordDictionary[]) tmpPrefiltersToExcludeCompleteTag.toArray(new WordDictionary[0]); final WordDictionary[] prefiltersToExcludeCompleteScript = (WordDictionary[]) tmpPrefiltersToExcludeCompleteScript.toArray(new WordDictionary[0]); final WordDictionary[] prefiltersToExcludeLinksWithinScripts = (WordDictionary[]) tmpPrefiltersToExcludeLinksWithinScripts.toArray(new WordDictionary[0]); final WordDictionary[] prefiltersToExcludeLinksWithinTags = (WordDictionary[]) tmpPrefiltersToExcludeLinksWithinTags.toArray(new WordDictionary[0]); final WordDictionary[] prefiltersToCaptureLinksWithinScripts = (WordDictionary[]) tmpPrefiltersToCaptureLinksWithinScripts.toArray(new WordDictionary[0]); final WordDictionary[] prefiltersToCaptureLinksWithinTags = (WordDictionary[]) tmpPrefiltersToCaptureLinksWithinTags.toArray(new WordDictionary[0]); final int[][] groupNumbersToCaptureLinksWithinScripts = ServerUtils.convertArrayIntegerListTo2DimIntArray(tmpGroupNumbersToCaptureLinksWithinScripts); final int[][] groupNumbersToCaptureLinksWithinTags = ServerUtils.convertArrayIntegerListTo2DimIntArray(tmpGroupNumbersToCaptureLinksWithinTags); final Cipher cipher = CryptoUtils.getCipher(); final CryptoKeyAndSalt key = CryptoUtils.generateRandomCryptoKeyAndSalt(false); Cipher.getInstance("AES"); MessageDigest.getInstance("SHA-1"); final ResponseWrapper response = new ResponseWrapper(new ResponseMock(), request, attackHandler, helper, false, "___ENCRYPTED___", cipher, key, "___SEC-KEY___", "___SEC-VALUE___", "___PROT-KEY___", false, false, false, false, "123.456.789.000", new HashSet(), prefiltersToExcludeCompleteScript, matchersToExcludeCompleteScript, prefiltersToExcludeCompleteTag, matchersToExcludeCompleteTag, prefiltersToExcludeLinksWithinScripts, matchersToExcludeLinksWithinScripts, prefiltersToExcludeLinksWithinTags, matchersToExcludeLinksWithinTags, prefiltersToCaptureLinksWithinScripts, matchersToCaptureLinksWithinScripts, prefiltersToCaptureLinksWithinTags, matchersToCaptureLinksWithinTags, groupNumbersToCaptureLinksWithinScripts, groupNumbersToCaptureLinksWithinTags, true, false, true, true, true, true, true, true, true, true, true, false, false, true, "", "", (short) 3, true, false, false); final List durations = new ArrayList(); for (int i = 0; i < executionCount; i++) { final long start = System.currentTimeMillis(); Reader reader = null; Writer writer = null; try { reader = new BufferedReader(new FileReader(this.htmlFile)); writer = new FileWriter(this.outputFile); if (applyFilter) { writer = new ResponseFilterWriter(writer, true, "http://127.0.0.1/test/sample", "/test", "/test", "___SEC-KEY___", "___SEC-VALUE___", "___PROT-KEY___", cipher, key, helper, "___ENCRYPTED___", request, response, stripHtmlEnabled, injectSecretTokensEnabled, protectParamsAndFormsEnabled, encryptQueryStringsEnabled, applyExtraProtectionForDisabledFormFields, applyExtraProtectionForReadonlyFormFields, applyExtraProtectionForRequestParamValueCount, prefiltersToExcludeCompleteScript, matchersToExcludeCompleteScript, prefiltersToExcludeCompleteTag, matchersToExcludeCompleteTag, prefiltersToExcludeLinksWithinScripts, matchersToExcludeLinksWithinScripts, prefiltersToExcludeLinksWithinTags, matchersToExcludeLinksWithinTags, prefiltersToCaptureLinksWithinScripts, matchersToCaptureLinksWithinScripts, prefiltersToCaptureLinksWithinTags, matchersToCaptureLinksWithinTags, groupNumbersToCaptureLinksWithinScripts, groupNumbersToCaptureLinksWithinTags, true, true, false, true, true, true, true, true, true, true, true, false, false, true, "", "", (short) 3, true, false); writer = new BufferedWriter(writer); } char[] chars = new char[16 * 1024]; int read; while ((read = reader.read(chars)) != -1) { if (read > 0) { writer.write(chars, 0, read); } } durations.add(new Long(System.currentTimeMillis() - start)); } finally { if (reader != null) { try { reader.close(); } catch (IOException ignored) { } } if (writer != null) { try { writer.close(); } catch (IOException ignored) { } } } } long sum = 0; for (final Iterator iter = durations.iterator(); iter.hasNext(); ) { Long value = (Long) iter.next(); sum += value.longValue(); } return sum / durations.size(); } | private void writeStatsToDatabase(long transferJobAIPCount, long reprocessingJobAIPCount, long transferJobAIPVolume, long reprocessingJobAIPVolume, long overallBinaryAIPCount, Map<String, AIPStatistics> mimeTypeRegister) throws SQLException { int nextAIPStatsID; long nextMimetypeStatsID; Statement select = dbConnection.createStatement(); String aipStatsQuery = "select max(aip_statistics_id) from aip_statistics"; ResultSet result = select.executeQuery(aipStatsQuery); if (result.next()) { nextAIPStatsID = result.getInt(1) + 1; } else { throw new SQLException("Problem getting maximum AIP Statistics ID"); } String mimetypeStatsQuery = "select max(mimetype_aip_statistics_id) from mimetype_aip_statistics"; result = select.executeQuery(mimetypeStatsQuery); if (result.next()) { nextMimetypeStatsID = result.getLong(1) + 1; } else { throw new SQLException("Problem getting maximum MIME type AIP Statistics ID"); } String insertAIPStatsEntryQuery = "insert into aip_statistics " + "(aip_statistics_id, tj_aip_count, tj_aip_volume, rj_aip_count, rj_aip_volume, " + "collation_date, binary_aip_count) " + "values (?, ?, ?, ?, ?, ?, ?)"; PreparedStatement insert = dbConnection.prepareStatement(insertAIPStatsEntryQuery); insert.setInt(1, nextAIPStatsID); insert.setLong(2, transferJobAIPCount); insert.setLong(3, transferJobAIPVolume); insert.setLong(4, reprocessingJobAIPCount); insert.setLong(5, reprocessingJobAIPVolume); insert.setDate(6, new java.sql.Date(System.currentTimeMillis())); insert.setLong(7, overallBinaryAIPCount); int rowsAdded = insert.executeUpdate(); if (rowsAdded != 1) { dbConnection.rollback(); throw new SQLException("Could not insert row into AIP statistics table"); } String insertMimeTypeStatsQuery = "insert into mimetype_aip_statistics " + "(mimetype_aip_statistics_id, aip_statistics_id, mimetype_aip_count, mimetype_aip_volume, mimetype) " + "values (?, ?, ?, ?, ?)"; insert = dbConnection.prepareStatement(insertMimeTypeStatsQuery); insert.setInt(2, nextAIPStatsID); for (String mimeType : mimeTypeRegister.keySet()) { AIPStatistics mimeTypeStats = mimeTypeRegister.get(mimeType); insert.setLong(1, nextMimetypeStatsID); insert.setLong(3, mimeTypeStats.aipCount); insert.setLong(4, mimeTypeStats.aipVolume); insert.setString(5, mimeType); nextMimetypeStatsID++; rowsAdded = insert.executeUpdate(); if (rowsAdded != 1) { dbConnection.rollback(); throw new SQLException("Could not insert row into MIME Type AIP statistics table"); } } dbConnection.commit(); } | 886,129 |
1 | public void writeToStream(OutputStream out) throws IOException { InputStream result = null; if (tempFile != null) { InputStream input = new BufferedInputStream(new FileInputStream(tempFile)); IOUtils.copy(input, out); IOUtils.closeQuietly(input); } else if (tempBuffer != null) { out.write(tempBuffer); } } | public static final void zip(final ZipOutputStream out, final File f, String base) throws Exception { if (f.isDirectory()) { final File[] fl = f.listFiles(); base = base.length() == 0 ? "" : base + File.separator; for (final File element : fl) { zip(out, element, base + element.getName()); } } else { out.putNextEntry(new org.apache.tools.zip.ZipEntry(base)); final FileInputStream in = new FileInputStream(f); IOUtils.copyStream(in, out); in.close(); } Thread.sleep(10); } | 886,130 |
0 | public static void copy(File in, File out) throws IOException { FileChannel ic = new FileInputStream(in).getChannel(); FileChannel oc = new FileOutputStream(out).getChannel(); ic.transferTo(0, ic.size(), oc); ic.close(); oc.close(); } | public boolean save(Object obj) { boolean bool = false; this.result = null; if (obj == null) return bool; Connection conn = null; try { conn = ConnectUtil.getConnect(); conn.setAutoCommit(false); String sql = SqlUtil.getInsertSql(this.getCls()); PreparedStatement ps = conn.prepareStatement(sql); setPsParams(ps, obj); ps.executeUpdate(); ps.close(); conn.commit(); bool = true; } catch (Exception e) { try { conn.rollback(); } catch (SQLException e1) { } this.result = e.getMessage(); } finally { this.closeConnectWithTransaction(conn); } return bool; } | 886,131 |
0 | public static void insertTableData(Connection dest, TableMetaData tableMetaData) throws Exception { PreparedStatement ps = null; try { dest.setAutoCommit(false); String sql = "INSERT INTO " + tableMetaData.getSchema() + "." + tableMetaData.getTableName() + " ("; for (String columnName : tableMetaData.getColumnsNames()) { sql += columnName + ","; } sql = sql.substring(0, sql.length() - 1); sql += ") VALUES ("; for (String columnName : tableMetaData.getColumnsNames()) { sql += "?" + ","; } sql = sql.substring(0, sql.length() - 1); sql += ")"; IOHelper.writeInfo(sql); ps = dest.prepareStatement(sql); for (Row r : tableMetaData.getData()) { try { int param = 1; for (String columnName : tableMetaData.getColumnsNames()) { if (dest instanceof OracleConnection) { if (tableMetaData.getColumnsTypes().get(columnName).equalsIgnoreCase("BLOB")) { BLOB blob = new BLOB((OracleConnection) dest, (byte[]) r.getRowData().get(columnName)); ((OraclePreparedStatement) ps).setBLOB(param, blob); } else if (tableMetaData.getColumnsTypes().get(columnName).equalsIgnoreCase("CLOB")) { ((OraclePreparedStatement) ps).setStringForClob(param, (String) r.getRowData().get(columnName)); } else if (tableMetaData.getColumnsTypes().get(columnName).equalsIgnoreCase("LONG")) { ps.setBytes(param, (byte[]) r.getRowData().get(columnName)); } } else { IOHelper.writeInfo(columnName + " = " + r.getRowData().get(columnName)); ps.setObject(param, r.getRowData().get(columnName)); } param++; } if (ps.executeUpdate() != 1) { dest.rollback(); updateTableData(dest, tableMetaData, r); } } catch (Exception ex) { try { dest.rollback(); updateTableData(dest, tableMetaData, r); } catch (Exception ex2) { IOHelper.writeError("Error in update " + sql, ex2); } } ps.clearParameters(); } dest.commit(); dest.setAutoCommit(true); } finally { if (ps != null) ps.close(); } } | public static void concatFiles(List<File> sourceFiles, File destFile) throws IOException { FileOutputStream outFile = new FileOutputStream(destFile); FileChannel outChannel = outFile.getChannel(); for (File f : sourceFiles) { FileInputStream fis = new FileInputStream(f); FileChannel channel = fis.getChannel(); channel.transferTo(0, channel.size(), outChannel); channel.close(); fis.close(); } outChannel.close(); } | 886,132 |
0 | protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { String zOntoJsonApiUrl = getInitParameter("zOntoJsonApiServletUrl"); URL url = new URL(zOntoJsonApiUrl + "?" + req.getQueryString()); resp.setContentType("text/html"); InputStreamReader bf = new InputStreamReader(url.openStream()); BufferedReader bbf = new BufferedReader(bf); String response = ""; String line = bbf.readLine(); PrintWriter out = resp.getWriter(); while (line != null) { response += line; line = bbf.readLine(); } out.print(response); out.close(); } | public static String encrypt(String password, String algorithm, byte[] salt) { StringBuffer buffer = new StringBuffer(); MessageDigest digest = null; int size = 0; if ("CRYPT".equalsIgnoreCase(algorithm)) { throw new InternalError("Not implemented"); } else if ("SHA".equalsIgnoreCase(algorithm) || "SSHA".equalsIgnoreCase(algorithm)) { size = 20; if (salt != null && salt.length > 0) { buffer.append("{SSHA}"); } else { buffer.append("{SHA}"); } try { digest = MessageDigest.getInstance("SHA-1"); } catch (NoSuchAlgorithmException e) { throw new InternalError("Invalid algorithm"); } } else if ("MD5".equalsIgnoreCase(algorithm) || "SMD5".equalsIgnoreCase(algorithm)) { size = 16; if (salt != null && salt.length > 0) { buffer.append("{SMD5}"); } else { buffer.append("{MD5}"); } try { digest = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { throw new InternalError("Invalid algorithm"); } } int outSize = size; digest.reset(); digest.update(password.getBytes()); if (salt != null && salt.length > 0) { digest.update(salt); outSize += salt.length; } byte[] out = new byte[outSize]; System.arraycopy(digest.digest(), 0, out, 0, size); if (salt != null && salt.length > 0) { System.arraycopy(salt, 0, out, size, salt.length); } buffer.append(Base64.encode(out)); return buffer.toString(); } | 886,133 |
1 | public void testCreateNewXMLFile() throws InvalidNodeTypeDefException, ParseException, Exception { JCRNodeSource emptySource = loadTestSource(); assertEquals(false, emptySource.exists()); OutputStream sourceOut = emptySource.getOutputStream(); assertNotNull(sourceOut); InputStream contentIn = getClass().getResourceAsStream(CONTENT_FILE); try { IOUtils.copy(contentIn, sourceOut); sourceOut.flush(); } finally { sourceOut.close(); contentIn.close(); } InputStream expected = getClass().getResourceAsStream(CONTENT_FILE); JCRNodeSource persistentSource = loadTestSource(); assertEquals(true, persistentSource.exists()); InputStream actual = persistentSource.getInputStream(); try { assertTrue(isXmlEqual(expected, actual)); } finally { expected.close(); actual.close(); } JCRNodeSource tmpSrc = (JCRNodeSource) resolveSource(BASE_URL + "users/alexander.saar"); persistentSource.delete(); tmpSrc.delete(); } | @Test public void testWriteAndRead() throws Exception { JCFSFileServer server = new JCFSFileServer(defaultTcpPort, defaultTcpAddress, defaultUdpPort, defaultUdpAddress, dir, 0, 0); JCFS.configureDiscovery(defaultUdpAddress, defaultUdpPort); try { server.start(); RFile file = new RFile("testreadwrite.txt"); RFileOutputStream out = new RFileOutputStream(file); out.write("test".getBytes("utf-8")); out.close(); RFileInputStream in = new RFileInputStream(file); byte[] buffer = new byte[4]; int readCount = in.read(buffer); in.close(); assertEquals(4, readCount); String resultRead = new String(buffer, "utf-8"); assertEquals("test", resultRead); } finally { server.stop(); } } | 886,134 |
1 | public void load(String filename) throws VisbardException { String defaultFilename = VisbardMain.getSettingsDir() + File.separator + DEFAULT_SETTINGS_FILE; File defaultFile = new File(defaultFilename); InputStream settingsInStreamFromFile = null; try { sLogger.info("Loading settings from : " + defaultFilename); settingsInStreamFromFile = new FileInputStream(defaultFile); } catch (FileNotFoundException fnf) { sLogger.info("Unable to load custom settings from user's settings directory (" + fnf.getMessage() + "); reverting to default settings"); try { InputStream settingsInStreamFromJar = VisbardMain.class.getClassLoader().getResourceAsStream(filename); FileOutputStream settingsOutStream = new FileOutputStream(defaultFile); int c; while ((c = settingsInStreamFromJar.read()) != -1) settingsOutStream.write(c); settingsInStreamFromJar.close(); settingsOutStream.close(); settingsInStreamFromFile = new FileInputStream(defaultFile); } catch (IOException ioe) { sLogger.warn("Unable to copy default settings to user's settings directory (" + ioe.getMessage() + "); using default settings from ViSBARD distribution package"); settingsInStreamFromFile = VisbardMain.class.getClassLoader().getResourceAsStream(filename); } } this.processSettingsFile(settingsInStreamFromFile, filename); } | public static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | 886,135 |
1 | public static void main(String arg[]) { try { String readFile = arg[0]; String writeFile = arg[1]; java.io.FileInputStream ss = new java.io.FileInputStream(readFile); ManagedMemoryDataSource ms = new ManagedMemoryDataSource(ss, 1024 * 1024, "foo/data", true); javax.activation.DataHandler dh = new javax.activation.DataHandler(ms); java.io.InputStream is = dh.getInputStream(); java.io.FileOutputStream fo = new java.io.FileOutputStream(writeFile); byte[] buf = new byte[512]; int read = 0; do { read = is.read(buf); if (read > 0) { fo.write(buf, 0, read); } } while (read > -1); fo.close(); is.close(); } catch (java.lang.Exception e) { log.error(Messages.getMessage("exception00"), e); } } | private static void copyFile(File sourceFile, File destFile) throws IOException { if (!destFile.exists()) { destFile.createNewFile(); } FileChannel source = null; FileChannel destination = null; try { source = new FileInputStream(sourceFile).getChannel(); destination = new FileOutputStream(destFile).getChannel(); destination.transferFrom(source, 0, source.size()); } finally { if (source != null) { source.close(); } if (destination != null) { destination.close(); } } } | 886,136 |
1 | private void triggerBuild(Properties props, String project, int rev) throws IOException { boolean doBld = Boolean.parseBoolean(props.getProperty(project + ".bld")); String url = props.getProperty(project + ".url"); if (!doBld || project == null || project.length() == 0) { System.out.println("BuildLauncher: Not configured to build '" + project + "'"); return; } else if (url == null) { throw new IOException("Tried to launch build for project '" + project + "' but " + project + ".url property is not defined!"); } SimpleDateFormat fmt = new SimpleDateFormat("yyyy/MM/dd HH:mm:ss.SSS"); System.out.println(fmt.format(new Date()) + ": Triggering a build via: " + url); BufferedReader r = new BufferedReader(new InputStreamReader(new URL(url).openStream())); while (r.readLine() != null) ; System.out.println(fmt.format(new Date()) + ": Build triggered!"); LATEST_BUILD.put(project, rev); r.close(); System.out.println(fmt.format(new Date()) + ": triggerBuild() done!"); } | public static String filtraDoc(HttpServletRequest request, String resource, Repository rep, String template) throws IOException { StringBuilder sb = new StringBuilder(); BufferedReader br = null; int sec = 0; try { URL url = rep.getResource(request, resource); if (url == null) { return "Documento " + rep.dir + "/" + resource + " no encontrado"; } br = new BufferedReader(new InputStreamReader(url.openStream(), rep.encoding)); String line = br.readLine(); while (line != null) { int pos = line.indexOf("KAttach("); if (pos > -1) { sb.append(attach(request, ++sec, line, pos, template)); } else { line = line.replaceAll("%20", "-"); sb.append(new String(line.getBytes(rep.encoding), Config.getMng().getEncoding())).append("\n"); } line = br.readLine(); } } finally { if (br != null) br.close(); } return sb.toString(); } | 886,137 |
1 | public void fileCopy2(File inFile, File outFile) throws Exception { try { FileChannel srcChannel = new FileInputStream(inFile).getChannel(); FileChannel dstChannel = new FileOutputStream(outFile).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } catch (IOException e) { throw new Exception("Could not copy file: " + inFile.getName()); } } | public void testAddFiles() throws Exception { File original = ZipPlugin.getFileInPlugin(new Path("testresources/test.zip")); File copy = new File(original.getParentFile(), "1test.zip"); InputStream in = null; OutputStream out = null; try { in = new FileInputStream(original); out = new FileOutputStream(copy); byte[] buf = new byte[1024]; int len; while ((len = in.read(buf)) > 0) out.write(buf, 0, len); } finally { Util.close(in); Util.close(out); } ArchiveFile archive = new ArchiveFile(ZipPlugin.createArchive(copy.getPath())); archive.addFiles(new String[] { ZipPlugin.getFileInPlugin(new Path("testresources/add.txt")).getPath() }, new NullProgressMonitor()); IArchive[] children = archive.getChildren(); boolean found = false; for (IArchive child : children) { if (child.getLabel(IArchive.NAME).equals("add.txt")) found = true; } assertTrue(found); copy.delete(); } | 886,138 |
0 | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | public void sendRequest(String method) { try { url = new URL(urlStr); httpURLConnection = (HttpURLConnection) url.openConnection(); httpURLConnection.setRequestMethod(method); httpURLConnection.setDoOutput(true); httpURLConnection.getOutputStream().flush(); httpURLConnection.getOutputStream().close(); System.out.println(httpURLConnection.getResponseMessage()); } catch (Exception e) { e.printStackTrace(); } finally { if (httpURLConnection != null) { httpURLConnection.disconnect(); } } } | 886,139 |
0 | public String getContentAsString(String url) { StringBuffer sb = new StringBuffer(""); try { URL urlmy = new URL(url); HttpURLConnection con = (HttpURLConnection) urlmy.openConnection(); HttpURLConnection.setFollowRedirects(true); con.setInstanceFollowRedirects(false); con.connect(); BufferedReader br = new BufferedReader(new InputStreamReader(con.getInputStream(), "UTF-8")); String s = ""; while ((s = br.readLine()) != null) { sb.append(s + "\r\n"); } con.disconnect(); } catch (Exception ex) { this.logException(ex); } return sb.toString(); } | public String getWebPage(String url) { String content = ""; URL urlObj = null; try { urlObj = new URL(url); } catch (MalformedURLException urlEx) { urlEx.printStackTrace(); throw new Error("URL creation failed."); } try { BufferedReader reader = new BufferedReader(new InputStreamReader(urlObj.openStream())); String line; while ((line = reader.readLine()) != null) { content += line; } } catch (IOException e) { e.printStackTrace(); throw new Error("Page retrieval failed."); } return content; } | 886,140 |
1 | public void processAction(ActionMapping mapping, ActionForm form, PortletConfig config, ActionRequest req, ActionResponse res) throws Exception { boolean editor = false; req.setAttribute(ViewReportsAction.REPORT_EDITOR_OR_ADMIN, false); User user = _getUser(req); List<Role> roles = RoleFactory.getAllRolesForUser(user.getUserId()); for (Role role : roles) { if (role.getName().equals("Report Administrator") || role.getName().equals("Report Editor") || role.getName().equals("CMS Administrator")) { req.setAttribute(ViewReportsAction.REPORT_EDITOR_OR_ADMIN, true); editor = true; break; } } requiresInput = false; badParameters = false; newReport = false; ActionRequestImpl reqImpl = (ActionRequestImpl) req; HttpServletRequest httpReq = reqImpl.getHttpServletRequest(); String cmd = req.getParameter(Constants.CMD); Logger.debug(this, "Inside EditReportAction cmd=" + cmd); ReportForm rfm = (ReportForm) form; ArrayList<String> ds = (DbConnectionFactory.getAllDataSources()); ArrayList<DataSource> dsResults = new ArrayList<DataSource>(); for (String dataSource : ds) { DataSource d = rfm.getNewDataSource(); if (dataSource.equals(com.dotmarketing.util.Constants.DATABASE_DEFAULT_DATASOURCE)) { d.setDsName("DotCMS Datasource"); } else { d.setDsName(dataSource); } dsResults.add(d); } rfm.setDataSources(dsResults); httpReq.setAttribute("dataSources", rfm.getDataSources()); Long reportId = UtilMethods.parseLong(req.getParameter("reportId"), 0); String referrer = req.getParameter("referrer"); if (reportId > 0) { report = ReportFactory.getReport(reportId); ArrayList<String> adminRoles = new ArrayList<String>(); adminRoles.add(com.dotmarketing.util.Constants.ROLE_REPORT_ADMINISTRATOR); if (user.getUserId().equals(report.getOwner())) { _checkWritePermissions(report, user, httpReq, adminRoles); } if (cmd == null || !cmd.equals(Constants.EDIT)) { rfm.setSelectedDataSource(report.getDs()); rfm.setReportName(report.getReportName()); rfm.setReportDescription(report.getReportDescription()); rfm.setReportId(report.getInode()); rfm.setWebFormReport(report.isWebFormReport()); httpReq.setAttribute("selectedDS", report.getDs()); } } else { if (!editor) { throw new DotRuntimeException("user not allowed to create a new report"); } report = new Report(); report.setOwner(_getUser(req).getUserId()); newReport = true; } req.setAttribute(WebKeys.PERMISSION_INODE_EDIT, report); if ((cmd != null) && cmd.equals(Constants.EDIT)) { if (Validator.validate(req, form, mapping)) { report.setReportName(rfm.getReportName()); report.setReportDescription(rfm.getReportDescription()); report.setWebFormReport(rfm.isWebFormReport()); if (rfm.isWebFormReport()) report.setDs("None"); else report.setDs(rfm.getSelectedDataSource()); String jrxmlPath = ""; String jasperPath = ""; try { HibernateUtil.startTransaction(); ReportFactory.saveReport(report); _applyPermissions(req, report); if (!rfm.isWebFormReport()) { if (UtilMethods.isSet(Config.getStringProperty("ASSET_REAL_PATH"))) { jrxmlPath = Config.getStringProperty("ASSET_REAL_PATH") + File.separator + Config.getStringProperty("REPORT_PATH") + File.separator + report.getInode() + ".jrxml"; jasperPath = Config.getStringProperty("ASSET_REAL_PATH") + File.separator + Config.getStringProperty("REPORT_PATH") + File.separator + report.getInode() + ".jasper"; } else { jrxmlPath = Config.CONTEXT.getRealPath(File.separator + Config.getStringProperty("REPORT_PATH") + File.separator + report.getInode() + ".jrxml"); jasperPath = Config.CONTEXT.getRealPath(File.separator + Config.getStringProperty("REPORT_PATH") + File.separator + report.getInode() + ".jasper"); } UploadPortletRequest upr = PortalUtil.getUploadPortletRequest(req); File importFile = upr.getFile("jrxmlFile"); if (importFile.exists()) { byte[] currentData = new byte[0]; FileInputStream is = new FileInputStream(importFile); int size = is.available(); currentData = new byte[size]; is.read(currentData); File f = new File(jrxmlPath); FileChannel channelTo = new FileOutputStream(f).getChannel(); ByteBuffer currentDataBuffer = ByteBuffer.allocate(currentData.length); currentDataBuffer.put(currentData); currentDataBuffer.position(0); channelTo.write(currentDataBuffer); channelTo.force(false); channelTo.close(); try { JasperCompileManager.compileReportToFile(jrxmlPath, jasperPath); } catch (Exception e) { Logger.error(this, "Unable to compile or save jrxml: " + e.toString()); try { f = new File(jrxmlPath); f.delete(); } catch (Exception ex) { Logger.info(this, "Unable to delete jrxml. This is usually a permissions problem."); } try { f = new File(jasperPath); f.delete(); } catch (Exception ex) { Logger.info(this, "Unable to delete jasper. This is usually a permissions problem."); } HibernateUtil.rollbackTransaction(); SessionMessages.add(req, "error", UtilMethods.htmlLineBreak(e.getMessage())); setForward(req, "portlet.ext.report.edit_report"); return; } JasperReport jasperReport = (JasperReport) JRLoader.loadObject(jasperPath); ReportParameterFactory.deleteReportsParameters(report); _loadReportParameters(jasperReport.getParameters()); report.setRequiresInput(requiresInput); HibernateUtil.save(report); } else if (newReport) { HibernateUtil.rollbackTransaction(); SessionMessages.add(req, "error", "message.report.compile.error"); setForward(req, "portlet.ext.report.edit_report"); return; } } HibernateUtil.commitTransaction(); HashMap params = new HashMap(); SessionMessages.add(req, "message", "message.report.upload.success"); params.put("struts_action", new String[] { "/ext/report/view_reports" }); referrer = com.dotmarketing.util.PortletURLUtil.getRenderURL(((ActionRequestImpl) req).getHttpServletRequest(), javax.portlet.WindowState.MAXIMIZED.toString(), params); _sendToReferral(req, res, referrer); return; } catch (Exception ex) { HibernateUtil.rollbackTransaction(); Logger.error(this, "Unable to save Report: " + ex.toString()); File f; Logger.info(this, "Trying to delete jrxml"); try { f = new File(jrxmlPath); f.delete(); } catch (Exception e) { Logger.info(this, "Unable to delete jrxml. This is usually because the file doesn't exist."); } try { f = new File(jasperPath); f.delete(); } catch (Exception e) { Logger.info(this, "Unable to delete jasper. This is usually because the file doesn't exist."); } if (badParameters) { SessionMessages.add(req, "error", ex.getMessage()); } else { SessionMessages.add(req, "error", "message.report.compile.error"); } setForward(req, "portlet.ext.report.edit_report"); return; } } else { setForward(req, "portlet.ext.report.edit_report"); } } if ((cmd != null) && cmd.equals("downloadReportSource")) { ActionResponseImpl resImpl = (ActionResponseImpl) res; HttpServletResponse response = resImpl.getHttpServletResponse(); if (!downloadSourceReport(reportId, httpReq, response)) { SessionMessages.add(req, "error", "message.report.source.file.not.found"); } } setForward(req, "portlet.ext.report.edit_report"); } | public boolean copier(String source, String nomFichierSource, java.io.File destination) { boolean resultat = false; OutputStream tmpOut; try { tmpOut = new BufferedOutputStream(new FileOutputStream(nomFichierSource + "001.tmp")); InputStream is = getClass().getResourceAsStream(source + nomFichierSource); int i; while ((i = is.read()) != -1) tmpOut.write(i); tmpOut.close(); is.close(); } catch (IOException ex) { ex.printStackTrace(); } FileChannel in = null; FileChannel out = null; try { in = new FileInputStream(new File(nomFichierSource + "001.tmp")).getChannel(); out = new FileOutputStream(destination).getChannel(); in.transferTo(0, in.size(), out); resultat = true; } catch (java.io.FileNotFoundException f) { } catch (java.io.IOException e) { } finally { if (in != null) { try { in.close(); } catch (IOException e) { } } if (out != null) { try { out.close(); } catch (IOException e) { } } } new File(nomFichierSource + "001.tmp").delete(); return (resultat); } | 886,141 |
1 | public static String stringOfUrl(String addr) throws IOException { ByteArrayOutputStream output = new ByteArrayOutputStream(); URL url = new URL(addr); IOUtils.copy(url.openStream(), output); return output.toString(); } | private void mergeOne(String level, char strand, String filename, Path outPath, FileSystem srcFS, FileSystem dstFS, Timer to) throws IOException { to.start(); final OutputStream outs = dstFS.create(new Path(outPath, filename)); final FileStatus[] parts = srcFS.globStatus(new Path(sorted ? getSortOutputDir(level, strand) : wrkDir, filename + "-[0-9][0-9][0-9][0-9][0-9][0-9]")); for (final FileStatus part : parts) { final InputStream ins = srcFS.open(part.getPath()); IOUtils.copyBytes(ins, outs, getConf(), false); ins.close(); } for (final FileStatus part : parts) srcFS.delete(part.getPath(), false); outs.write(BlockCompressedStreamConstants.EMPTY_GZIP_BLOCK); outs.close(); System.out.printf("summarize :: Merged %s%c in %d.%03d s.\n", level, strand, to.stopS(), to.fms()); } | 886,142 |
0 | public void saveDraft(org.hibernate.Session hsession, Session session, String repositoryName, int ideIdint, String to, String cc, String bcc, String subject, String body, Vector attachments, boolean isHtml, String charset, InternetHeaders headers, String priority) throws MailException { try { if (charset == null) { charset = MimeUtility.javaCharset(Charset.defaultCharset().displayName()); } if ((body == null) || body.trim().equals("")) { body = " "; } Email email = null; if (isHtml) { email = new HtmlEmail(); } else { email = new MultiPartEmail(); } email.setCharset(charset); Users user = getUser(hsession, repositoryName); Identity identity = getIdentity(hsession, ideIdint, user); InternetAddress _returnPath = new InternetAddress(identity.getIdeEmail(), identity.getIdeName()); InternetAddress _from = new InternetAddress(identity.getIdeEmail(), identity.getIdeName()); InternetAddress _replyTo = new InternetAddress(identity.getIdeReplyTo(), identity.getIdeName()); InternetAddress[] _to = MessageUtilities.encodeAddresses(to, null); InternetAddress[] _cc = MessageUtilities.encodeAddresses(cc, null); InternetAddress[] _bcc = MessageUtilities.encodeAddresses(bcc, null); if (_from != null) { email.setFrom(_from.getAddress(), _from.getPersonal()); } if (_returnPath != null) { email.addHeader("Return-Path", _returnPath.getAddress()); email.addHeader("Errors-To", _returnPath.getAddress()); email.addHeader("X-Errors-To", _returnPath.getAddress()); } if (_replyTo != null) { email.addReplyTo(_replyTo.getAddress(), _replyTo.getPersonal()); } if ((_to != null) && (_to.length > 0)) { HashSet aux = new HashSet(_to.length); Collections.addAll(aux, _to); email.setTo(aux); } if ((_cc != null) && (_cc.length > 0)) { HashSet aux = new HashSet(_cc.length); Collections.addAll(aux, _cc); email.setCc(aux); } if ((_bcc != null) && (_bcc.length > 0)) { HashSet aux = new HashSet(_bcc.length); Collections.addAll(aux, _bcc); email.setBcc(aux); } email.setSubject(subject); Date now = new Date(); email.setSentDate(now); File dir = new File(System.getProperty("user.home") + File.separator + "tmp"); if (!dir.exists()) { dir.mkdir(); } if ((attachments != null) && (attachments.size() > 0)) { for (int i = 0; i < attachments.size(); i++) { ByteArrayInputStream bais = null; FileOutputStream fos = null; try { MailPartObj obj = (MailPartObj) attachments.get(i); File file = new File(dir, obj.getName()); bais = new ByteArrayInputStream(obj.getAttachent()); fos = new FileOutputStream(file); IOUtils.copy(bais, fos); EmailAttachment attachment = new EmailAttachment(); attachment.setPath(file.getPath()); attachment.setDisposition(EmailAttachment.ATTACHMENT); attachment.setDescription("File Attachment: " + file.getName()); attachment.setName(file.getName()); if (email instanceof MultiPartEmail) { ((MultiPartEmail) email).attach(attachment); } } catch (Exception ex) { } finally { IOUtils.closeQuietly(bais); IOUtils.closeQuietly(fos); } } } if (headers != null) { Header xheader; Enumeration xe = headers.getAllHeaders(); for (; xe.hasMoreElements(); ) { xheader = (Header) xe.nextElement(); if (xheader.getName().equals(RFC2822Headers.IN_REPLY_TO)) { email.addHeader(xheader.getName(), xheader.getValue()); } else if (xheader.getName().equals(RFC2822Headers.REFERENCES)) { email.addHeader(xheader.getName(), xheader.getValue()); } } } if (priority != null) { if (priority.equals("high")) { email.addHeader("Importance", priority); email.addHeader("X-priority", "1"); } else if (priority.equals("low")) { email.addHeader("Importance", priority); email.addHeader("X-priority", "5"); } } if (email instanceof HtmlEmail) { ((HtmlEmail) email).setHtmlMsg(body); } else { email.setMsg(body); } email.setMailSession(session); email.buildMimeMessage(); MimeMessage mime = email.getMimeMessage(); int size = MessageUtilities.getMessageSize(mime); if (!controlQuota(hsession, user, size)) { throw new MailException("ErrorMessages.mail.quota.exceded"); } messageable.storeDraftMessage(getId(), mime, user); } catch (MailException e) { throw e; } catch (Exception e) { throw new MailException(e); } catch (java.lang.OutOfMemoryError ex) { System.gc(); throw new MailException(ex); } catch (Throwable e) { throw new MailException(e); } finally { GeneralOperations.closeHibernateSession(hsession); } } | @Override public void decorate(Object element, IDecoration decoration) { if (element != null && element instanceof IProject) { InputStream is = null; try { IProject project = (IProject) element; IFile file = project.getFile(Activator.PLUGIN_CONF); if (file.exists()) { URL url = bundle.getEntry("icons/leaf4e_decorator.gif"); is = FileLocator.toFileURL(url).openStream(); Image img = new Image(Display.getCurrent(), is); ImageDescriptor id = ImageDescriptor.createFromImage(img); decoration.addOverlay(id, IDecoration.TOP_LEFT); } } catch (Exception e) { Status status = new Status(IStatus.WARNING, Activator.PLUGIN_ID, "Decorating error", e); logger.log(status); } finally { if (is != null) { try { is.close(); } catch (IOException e) { Status status = new Status(IStatus.WARNING, Activator.PLUGIN_ID, "", e); logger.log(status); } } } } } | 886,143 |
0 | protected void serveStaticContent(HttpServletRequest request, HttpServletResponse response, String pathInfo) throws ServletException { InputStream is = servletConfig.getServletContext().getResourceAsStream(pathInfo); if (is == null) { throw new ServletException("Static resource " + pathInfo + " is not available"); } try { int ind = pathInfo.lastIndexOf("."); if (ind != -1 && ind < pathInfo.length()) { String type = STATIC_CONTENT_TYPES.get(pathInfo.substring(ind + 1)); if (type != null) { response.setContentType(type); } } ServletOutputStream os = response.getOutputStream(); IOUtils.copy(is, os); os.flush(); } catch (IOException ex) { throw new ServletException("Static resource " + pathInfo + " can not be written to the output stream"); } } | private String generateUniqueIdMD5(String workgroupIdString, String runIdString) { String passwordUnhashed = workgroupIdString + "-" + runIdString; MessageDigest m = null; try { m = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } m.update(passwordUnhashed.getBytes(), 0, passwordUnhashed.length()); String uniqueIdMD5 = new BigInteger(1, m.digest()).toString(16); return uniqueIdMD5; } | 886,144 |
1 | private boolean copy_to_file_io(File src, File dst) throws IOException { InputStream is = null; OutputStream os = null; try { is = new FileInputStream(src); is = new BufferedInputStream(is); os = new FileOutputStream(dst); os = new BufferedOutputStream(os); byte buffer[] = new byte[1024 * 64]; int read; while ((read = is.read(buffer)) > 0) { os.write(buffer, 0, read); } return true; } finally { try { if (is != null) is.close(); } catch (IOException e) { Debug.debug(e); } try { if (os != null) os.close(); } catch (IOException e) { Debug.debug(e); } } } | public static void copy(File from_file, File to_file) throws IOException { if (!from_file.exists()) { throw new IOException("FileCopy: no such source file: " + from_file.getPath()); } if (!from_file.isFile()) { throw new IOException("FileCopy: can't copy directory: " + from_file.getPath()); } if (!from_file.canRead()) { throw new IOException("FileCopy: source file is unreadable: " + from_file.getPath()); } if (to_file.isDirectory()) { to_file = new File(to_file, from_file.getName()); } if (to_file.exists()) { if (!to_file.canWrite()) { throw new IOException("FileCopy: destination file is unwriteable: " + to_file.getPath()); } int choice = JOptionPane.showConfirmDialog(null, "Overwrite existing file " + to_file.getPath(), "File Exists", JOptionPane.YES_NO_OPTION, JOptionPane.QUESTION_MESSAGE); if (choice != JOptionPane.YES_OPTION) { throw new IOException("FileCopy: existing file was not overwritten."); } } else { String parent = to_file.getParent(); if (parent == null) { parent = Globals.getDefaultPath(); } File dir = new File(parent); if (!dir.exists()) { throw new IOException("FileCopy: destination directory doesn't exist: " + parent); } if (dir.isFile()) { throw new IOException("FileCopy: destination is not a directory: " + parent); } if (!dir.canWrite()) { throw new IOException("FileCopy: destination directory is unwriteable: " + parent); } } FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(from_file); to = new FileOutputStream(to_file); byte[] buffer = new byte[4096]; int bytes_read; while ((bytes_read = from.read(buffer)) != -1) { to.write(buffer, 0, bytes_read); } } finally { if (from != null) { try { from.close(); } catch (IOException e) { } } if (to != null) { try { to.close(); } catch (IOException e) { } } } } | 886,145 |
1 | private void add(Hashtable applicantInfo) throws Exception { String mode = "".equals(getParam("applicant_id_gen").trim()) ? "update" : "insert"; String applicant_id = getParam("applicant_id"); String password = getParam("password"); if ("".equals(applicant_id)) applicant_id = getParam("applicant_id_gen"); if ("".equals(getParam("applicant_name"))) throw new Exception("Can not have empty fields!"); applicantInfo.put("id", applicant_id); applicantInfo.put("password", password); applicantInfo.put("name", getParam("applicant_name")); applicantInfo.put("address1", getParam("address1")); applicantInfo.put("address2", getParam("address2")); applicantInfo.put("address3", getParam("address3")); applicantInfo.put("city", getParam("city")); applicantInfo.put("state", getParam("state")); applicantInfo.put("poscode", getParam("poscode")); applicantInfo.put("country_code", getParam("country_list")); applicantInfo.put("email", getParam("email")); applicantInfo.put("phone", getParam("phone")); String birth_year = getParam("birth_year"); String birth_month = getParam("birth_month"); String birth_day = getParam("birth_day"); applicantInfo.put("birth_year", birth_year); applicantInfo.put("birth_month", birth_month); applicantInfo.put("birth_day", birth_day); applicantInfo.put("gender", getParam("gender")); String birth_date = birth_year + "-" + fmt(birth_month) + "-" + fmt(birth_day); applicantInfo.put("birth_date", birth_date); Db db = null; String sql = ""; Connection conn = null; try { db = new Db(); conn = db.getConnection(); conn.setAutoCommit(false); Statement stmt = db.getStatement(); SQLRenderer r = new SQLRenderer(); boolean found = false; { r.add("applicant_id"); r.add("applicant_id", (String) applicantInfo.get("id")); sql = r.getSQLSelect("adm_applicant"); ResultSet rs = stmt.executeQuery(sql); if (rs.next()) found = true; else found = false; } if (found && !"update".equals(mode)) throw new Exception("Applicant Id was invalid!"); { r.clear(); r.add("password", (String) applicantInfo.get("password")); r.add("applicant_name", (String) applicantInfo.get("name")); r.add("address1", (String) applicantInfo.get("address1")); r.add("address2", (String) applicantInfo.get("address2")); r.add("address3", (String) applicantInfo.get("address3")); r.add("city", (String) applicantInfo.get("city")); r.add("state", (String) applicantInfo.get("state")); r.add("poscode", (String) applicantInfo.get("poscode")); r.add("country_code", (String) applicantInfo.get("country_code")); r.add("phone", (String) applicantInfo.get("phone")); r.add("birth_date", (String) applicantInfo.get("birth_date")); r.add("gender", (String) applicantInfo.get("gender")); } if (!found) { r.add("applicant_id", (String) applicantInfo.get("id")); sql = r.getSQLInsert("adm_applicant"); stmt.executeUpdate(sql); } else { r.update("applicant_id", (String) applicantInfo.get("id")); sql = r.getSQLUpdate("adm_applicant"); stmt.executeUpdate(sql); } conn.commit(); } catch (DbException dbex) { throw dbex; } catch (SQLException sqlex) { try { conn.rollback(); } catch (SQLException rollex) { } throw sqlex; } finally { if (db != null) db.close(); } } | public void createTableIfNotExisting(Connection conn) throws SQLException { String sql = "select * from " + tableName; PreparedStatement ps = null; try { ps = conn.prepareStatement(sql); ps.executeQuery(); } catch (SQLException sqle) { ps.close(); sql = "create table " + tableName + " ( tableName varchar(255) not null primary key, " + " lastId numeric(18) not null)"; ps = conn.prepareStatement(sql); ps.executeUpdate(); } finally { ps.close(); try { if (!conn.getAutoCommit()) conn.commit(); } catch (Exception e) { conn.rollback(); } } } | 886,146 |
0 | public String process(URL url) throws IOException { String line, results = ""; InputStream is = url.openStream(); BufferedReader dis = new BufferedReader(new InputStreamReader(is)); while ((line = dis.readLine()) != null) { results += line + "\n"; } System.out.println(results); return results; } | @Override protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { String uuid = req.getParameterValues(Constants.PARAM_UUID)[0]; String datastream = null; if (req.getRequestURI().contains(Constants.SERVLET_DOWNLOAD_FOXML_PREFIX)) { resp.addHeader("Content-Disposition", "attachment; ContentType = \"text/xml\"; filename=\"" + uuid + "_server_version.foxml\""); } else { datastream = req.getParameterValues(Constants.PARAM_DATASTREAM)[0]; resp.addHeader("Content-Disposition", "attachment; ContentType = \"text/xml\"; filename=\"" + uuid + "_server_version_" + datastream + ".xml\""); } ServletOutputStream os = resp.getOutputStream(); if (uuid != null && !"".equals(uuid)) { try { StringBuffer sb = new StringBuffer(); if (req.getRequestURI().contains(Constants.SERVLET_DOWNLOAD_FOXML_PREFIX)) { sb.append(config.getFedoraHost()).append("/objects/").append(uuid).append("/objectXML"); } else if (req.getRequestURI().contains(Constants.SERVLET_DOWNLOAD_DATASTREAMS_PREFIX)) { sb.append(config.getFedoraHost()).append("/objects/").append(uuid).append("/datastreams/").append(datastream).append("/content"); } InputStream is = RESTHelper.get(sb.toString(), config.getFedoraLogin(), config.getFedoraPassword(), false); if (is == null) { return; } try { if (req.getRequestURI().contains(Constants.SERVLET_DOWNLOAD_DATASTREAMS_PREFIX)) { os.write(Constants.XML_HEADER_WITH_BACKSLASHES.getBytes()); } IOUtils.copyStreams(is, os); } catch (IOException e) { resp.setStatus(HttpURLConnection.HTTP_NOT_FOUND); LOGGER.error("Problem with downloading foxml.", e); } finally { os.flush(); if (is != null) { try { is.close(); } catch (IOException e) { resp.setStatus(HttpURLConnection.HTTP_NOT_FOUND); LOGGER.error("Problem with downloading foxml.", e); } finally { is = null; } } } } catch (IOException e) { resp.setStatus(HttpURLConnection.HTTP_NOT_FOUND); LOGGER.error("Problem with downloading foxml.", e); } finally { os.flush(); } } } | 886,147 |
1 | private static Long getNextPkValueForEntityIncreaseBy(String ename, int count, int increaseBy) { if (increaseBy < 1) increaseBy = 1; String where = "where eoentity_name = '" + ename + "'"; ERXJDBCConnectionBroker broker = ERXJDBCConnectionBroker.connectionBrokerForEntityNamed(ename); Connection con = broker.getConnection(); try { try { con.setAutoCommit(false); con.setReadOnly(false); } catch (SQLException e) { log.error(e, e); } for (int tries = 0; tries < count; tries++) { try { ResultSet resultSet = con.createStatement().executeQuery("select pk_value from pk_table " + where); con.commit(); boolean hasNext = resultSet.next(); long pk = 1; if (hasNext) { pk = resultSet.getLong("pk_value"); con.createStatement().executeUpdate("update pk_table set pk_value = " + (pk + increaseBy) + " " + where); } else { pk = maxIdFromTable(ename); con.createStatement().executeUpdate("insert into pk_table (eoentity_name, pk_value) values ('" + ename + "', " + (pk + increaseBy) + ")"); } con.commit(); return new Long(pk); } catch (SQLException ex) { String s = ex.getMessage().toLowerCase(); boolean creationError = (s.indexOf("error code 116") != -1); creationError |= (s.indexOf("pk_table") != -1 && s.indexOf("does not exist") != -1); creationError |= s.indexOf("ora-00942") != -1; if (creationError) { try { con.rollback(); log.info("creating pk table"); con.createStatement().executeUpdate("create table pk_table (eoentity_name varchar(100) not null, pk_value integer)"); con.createStatement().executeUpdate("alter table pk_table add primary key (eoentity_name)"); con.commit(); } catch (SQLException ee) { throw new NSForwardException(ee, "could not create pk table"); } } else { throw new NSForwardException(ex, "Error fetching PK"); } } } } finally { broker.freeConnection(con); } throw new IllegalStateException("Couldn't get PK"); } | protected int insertRecord(PutMetadataRequest request, PutMetadataInfo info) throws ImsServiceException, SQLException { Connection con = null; boolean autoCommit = true; PreparedStatement st = null; ResultSet rs = null; int nRows = 0; String sXml = info.getXml(); String sUuid = info.getUuid(); String sName = info.getName(); String sThumbnailBinary = info.getThumbnailBinary(); String sTable = this.getResourceTableName(); String sDataTable = this.getResourceDataTableName(); long id = doesRecordExist(sTable, sUuid); try { ManagedConnection mc = returnConnection(); con = mc.getJdbcConnection(); autoCommit = con.getAutoCommit(); con.setAutoCommit(false); if (id < 0) { StringBuffer sql = new StringBuffer(); sql.append("INSERT INTO ").append(sTable); sql.append(" ("); sql.append("DOCUUID,"); sql.append("TITLE,"); sql.append("OWNER"); sql.append(")"); sql.append(" VALUES(?,?,?)"); logExpression(sql.toString()); st = con.prepareStatement(sql.toString()); int n = 1; st.setString(n++, sUuid); st.setString(n++, sName); st.setInt(n++, this.publisher.getLocalID()); nRows = st.executeUpdate(); closeStatement(st); if (nRows > 0) { if (getIsDbCaseSensitive(this.getRequestContext())) { st = con.prepareStatement("SELECT id FROM " + sTable + " WHERE UPPER(docuuid)=?"); } else { st = con.prepareStatement("SELECT id FROM " + sTable + " WHERE docuuid=?"); } st.setString(1, sUuid.toUpperCase()); rs = st.executeQuery(); rs.next(); id = rs.getLong(1); closeStatement(st); request.setActionStatus(ImsRequest.ACTION_STATUS_OK); sql = new StringBuffer(); sql.append("INSERT INTO ").append(sDataTable); sql.append(" (DOCUUID,ID,XML)"); sql.append(" VALUES(?,?,?)"); logExpression(sql.toString()); st = con.prepareStatement(sql.toString()); st.setString(1, sUuid); st.setLong(2, id); st.setString(3, sXml); st.executeUpdate(); } } else { this.authorize(request, sUuid); StringBuffer sql = new StringBuffer(); sql.append("UPDATE ").append(sTable); sql.append(" SET "); if (!request.getLockTitle()) { sql.append("TITLE=?, "); } sql.append("OWNER=?, "); sql.append("UPDATEDATE=?"); sql.append(" WHERE DOCUUID=?"); logExpression(sql.toString()); st = con.prepareStatement(sql.toString()); int n = 1; if (!request.getLockTitle()) { st.setString(n++, sName); } st.setInt(n++, this.publisher.getLocalID()); st.setTimestamp(n++, new Timestamp(System.currentTimeMillis())); st.setString(n++, sUuid); nRows = st.executeUpdate(); if (nRows > 0) { request.setActionStatus(ImsRequest.ACTION_STATUS_REPLACED); } closeStatement(st); sql = new StringBuffer(); if (doesRecordExist(sDataTable, sUuid) >= 0) { sql.append("UPDATE ").append(sDataTable); sql.append(" SET DOCUUID=?, XML=?, THUMBNAIL=?"); sql.append(" WHERE ID=?"); } else { sql.append("INSERT INTO ").append(sDataTable); sql.append(" (DOCUUID, XML,THUMBNAIL,ID)"); sql.append(" VALUES(?,?,?,?)"); } logExpression(sql.toString()); st = con.prepareStatement(sql.toString()); st.setString(1, sUuid); st.setString(2, sXml); st.setBytes(3, null); st.setLong(4, id); st.executeUpdate(); } con.commit(); } catch (ImsServiceException ex) { if (con != null) { con.rollback(); } throw ex; } catch (SQLException ex) { if (con != null) { con.rollback(); } throw ex; } finally { closeResultSet(rs); closeStatement(st); if (con != null) { con.setAutoCommit(autoCommit); } } if ((sThumbnailBinary != null) && (sThumbnailBinary.length() > 0)) { this.updateThumbnail(sThumbnailBinary, sUuid); } return nRows; } | 886,148 |
1 | public void newGuidSeed(boolean secure) { SecureRandom sr = new SecureRandom(); long secureInitializer = sr.nextLong(); Random rand = new Random(secureInitializer); String host_ip = ""; try { host_ip = InetAddress.getLocalHost().toString(); } catch (UnknownHostException err) { err.printStackTrace(); } MessageDigest md5 = null; try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException err) { err.printStackTrace(); } try { long time = System.currentTimeMillis(); long randNumber = 0; if (secure) { randNumber = sr.nextLong(); } else { randNumber = rand.nextLong(); } sbBeforeMd5.append(host_ip); sbBeforeMd5.append(":"); sbBeforeMd5.append(Long.toString(time)); sbBeforeMd5.append(":"); sbBeforeMd5.append(Long.toString(randNumber)); seed = sbBeforeMd5.toString(); md5.update(seed.getBytes()); byte[] array = md5.digest(); StringBuffer temp_sb = new StringBuffer(); for (int i = 0; i < array.length; i++) { int b = array[i] & 0xFF; if (b < 0x10) temp_sb.append('0'); temp_sb.append(Integer.toHexString(b)); } rawGUID = temp_sb.toString(); } catch (Exception err) { err.printStackTrace(); } } | public String getMD5(String data) { try { MessageDigest md5Algorithm = MessageDigest.getInstance("MD5"); md5Algorithm.update(data.getBytes(), 0, data.length()); byte[] digest = md5Algorithm.digest(); StringBuffer hexString = new StringBuffer(); String hexDigit = null; for (int i = 0; i < digest.length; i++) { hexDigit = Integer.toHexString(0xFF & digest[i]); if (hexDigit.length() < 2) { hexDigit = "0" + hexDigit; } hexString.append(hexDigit); } return hexString.toString(); } catch (NoSuchAlgorithmException ne) { return data; } } | 886,149 |
1 | public static boolean verifyPassword(String digest, String password) { String alg = null; int size = 0; if (digest.regionMatches(true, 0, "{SHA}", 0, 5)) { digest = digest.substring(5); alg = "SHA-1"; size = 20; } else if (digest.regionMatches(true, 0, "{SSHA}", 0, 6)) { digest = digest.substring(6); alg = "SHA-1"; size = 20; } else if (digest.regionMatches(true, 0, "{MD5}", 0, 5)) { digest = digest.substring(5); alg = "MD5"; size = 16; } else if (digest.regionMatches(true, 0, "{SMD5}", 0, 6)) { digest = digest.substring(6); alg = "MD5"; size = 16; } try { MessageDigest sha = MessageDigest.getInstance(alg); if (sha == null) { return false; } byte[][] hs = split(Base64.decode(digest), size); byte[] hash = hs[0]; byte[] salt = hs[1]; sha.reset(); sha.update(password.getBytes()); sha.update(salt); byte[] pwhash = sha.digest(); return MessageDigest.isEqual(hash, pwhash); } catch (NoSuchAlgorithmException nsae) { throw new RuntimeException("failed to find " + "algorithm for password hashing.", nsae); } } | private static String hashToMD5(String sig) { try { MessageDigest lDigest = MessageDigest.getInstance("MD5"); lDigest.update(sig.getBytes()); BigInteger lHashInt = new BigInteger(1, lDigest.digest()); return String.format("%1$032X", lHashInt).toLowerCase(); } catch (NoSuchAlgorithmException lException) { throw new RuntimeException(lException); } } | 886,150 |
0 | public Object run() { if (type == GET_THEME_DIR) { String sep = File.separator; String[] dirs = new String[] { userHome + sep + ".themes", System.getProperty("swing.metacitythemedir"), "/usr/share/themes", "/usr/gnome/share/themes", "/opt/gnome2/share/themes" }; URL themeDir = null; for (int i = 0; i < dirs.length; i++) { if (dirs[i] == null) { continue; } File dir = new File(dirs[i] + sep + arg + sep + "metacity-1"); if (new File(dir, "metacity-theme-1.xml").canRead()) { try { themeDir = dir.toURL(); } catch (MalformedURLException ex) { themeDir = null; } break; } } if (themeDir == null) { String filename = "resources/metacity/" + arg + "/metacity-1/metacity-theme-1.xml"; URL url = getClass().getResource(filename); if (url != null) { String str = url.toString(); try { themeDir = new URL(str.substring(0, str.lastIndexOf('/')) + "/"); } catch (MalformedURLException ex) { themeDir = null; } } } return themeDir; } else if (type == GET_USER_THEME) { try { userHome = System.getProperty("user.home"); String theme = System.getProperty("swing.metacitythemename"); if (theme != null) { return theme; } URL url = new URL(new File(userHome).toURL(), ".gconf/apps/metacity/general/%25gconf.xml"); Reader reader = new InputStreamReader(url.openStream(), "ISO-8859-1"); char[] buf = new char[1024]; StringBuffer strBuf = new StringBuffer(); int n; while ((n = reader.read(buf)) >= 0) { strBuf.append(buf, 0, n); } reader.close(); String str = strBuf.toString(); if (str != null) { String strLowerCase = str.toLowerCase(); int i = strLowerCase.indexOf("<entry name=\"theme\""); if (i >= 0) { i = strLowerCase.indexOf("<stringvalue>", i); if (i > 0) { i += "<stringvalue>".length(); int i2 = str.indexOf("<", i); return str.substring(i, i2); } } } } catch (MalformedURLException ex) { } catch (IOException ex) { } return null; } else if (type == GET_IMAGE) { return new ImageIcon((URL) arg).getImage(); } else { return null; } } | private static void writeBinaryFile(String filename, String target) throws IOException { File outputFile = new File(target); AgentFilesystem.forceDir(outputFile.getParent()); FileOutputStream output = new FileOutputStream(new File(target)); FileInputStream inputStream = new FileInputStream(filename); byte[] buffer = new byte[4096]; int bytesRead = 0; while ((bytesRead = inputStream.read(buffer)) > -1) output.write(buffer, 0, bytesRead); inputStream.close(); output.close(); } | 886,151 |
1 | public void testCreateNewXMLFile() throws InvalidNodeTypeDefException, ParseException, Exception { JCRNodeSource emptySource = loadTestSource(); assertEquals(false, emptySource.exists()); OutputStream sourceOut = emptySource.getOutputStream(); assertNotNull(sourceOut); InputStream contentIn = getClass().getResourceAsStream(CONTENT_FILE); try { IOUtils.copy(contentIn, sourceOut); sourceOut.flush(); } finally { sourceOut.close(); contentIn.close(); } InputStream contentIn2 = getClass().getResourceAsStream(CONTENT2_FILE); sourceOut = emptySource.getOutputStream(); try { IOUtils.copy(contentIn2, sourceOut); sourceOut.flush(); } finally { sourceOut.close(); contentIn2.close(); } InputStream expected = getClass().getResourceAsStream(CONTENT2_FILE); JCRNodeSource persistentSource = loadTestSource(); assertEquals(true, persistentSource.exists()); InputStream actual = persistentSource.getInputStream(); try { assertTrue(isXmlEqual(expected, actual)); } finally { expected.close(); actual.close(); } JCRNodeSource tmpSrc = (JCRNodeSource) resolveSource(BASE_URL + "users/alexander.saar"); persistentSource.delete(); tmpSrc.delete(); } | public static void copy(File src, File dest) throws IOException { if (!src.exists()) { throw new IOException(StaticUtils.format(OStrings.getString("LFC_ERROR_FILE_DOESNT_EXIST"), new Object[] { src.getAbsolutePath() })); } FileInputStream fis = new FileInputStream(src); dest.getParentFile().mkdirs(); FileOutputStream fos = new FileOutputStream(dest); byte[] b = new byte[BUFSIZE]; int readBytes; while ((readBytes = fis.read(b)) > 0) fos.write(b, 0, readBytes); fis.close(); fos.close(); } | 886,152 |
0 | private String md5(String pass) { StringBuffer enteredChecksum = new StringBuffer(); byte[] digest; MessageDigest md5; try { md5 = MessageDigest.getInstance("MD5"); md5.update(pass.getBytes(), 0, pass.length()); digest = md5.digest(); for (int i = 0; i < digest.length; i++) { enteredChecksum.append(toHexString(digest[i])); } } catch (NoSuchAlgorithmException e) { log.error("Could not create MD5 hash!"); log.error(e.getLocalizedMessage()); log.error(e.getStackTrace()); } return enteredChecksum.toString(); } | public Configuration(URL url) { InputStream in = null; try { load(in = url.openStream()); } catch (Exception e) { throw new RuntimeException("Could not load configuration from " + url, e); } finally { if (in != null) { try { in.close(); } catch (IOException ignore) { } } } } | 886,153 |
1 | public void addUserToRealm(final NewUser user) { try { connection.setAutoCommit(false); final String pass, salt; final List<RealmWithEncryptedPass> realmPass = new ArrayList<RealmWithEncryptedPass>(); Realm realm; String username; username = user.username.toLowerCase(locale); PasswordHasher ph = PasswordFactory.getInstance().getPasswordHasher(); pass = ph.hashPassword(user.password); salt = ph.getSalt(); realmPass.add(new RealmWithEncryptedPass(cm.getRealm("null"), PasswordFactory.getInstance().getPasswordHasher().hashRealmPassword(username, "", user.password))); if (user.realms != null) { for (String realmName : user.realms) { realm = cm.getRealm(realmName); realmPass.add(new RealmWithEncryptedPass(realm, PasswordFactory.getInstance().getPasswordHasher().hashRealmPassword(username, realm.getFullRealmName(), user.password))); } user.realms = null; } new ProcessEnvelope().executeNull(new ExecuteProcessAbstractImpl(connection, false, false, true, true) { @Override public void executeProcessReturnNull() throws SQLException { psImpl = connImpl.prepareStatement(sqlCommands.getProperty("user.updatePassword")); psImpl.setString(1, pass); psImpl.setString(2, salt); psImpl.setInt(3, user.userId); psImpl.executeUpdate(); } }); new ProcessEnvelope().executeNull(new ExecuteProcessAbstractImpl(connection, false, false, true, true) { @Override public void executeProcessReturnNull() throws SQLException { psImpl = connImpl.prepareStatement(sqlCommands.getProperty("realm.addUser")); RealmWithEncryptedPass rwep; RealmDb realm; Iterator<RealmWithEncryptedPass> iter1 = realmPass.iterator(); while (iter1.hasNext()) { rwep = iter1.next(); realm = (RealmDb) rwep.realm; psImpl.setInt(1, realm.getRealmId()); psImpl.setInt(2, user.userId); psImpl.setInt(3, user.domainId); psImpl.setString(4, rwep.password); psImpl.executeUpdate(); } } }); connection.commit(); cmDB.removeUser(user.userId); } catch (GeneralSecurityException e) { log.error(e); if (connection != null) { try { connection.rollback(); } catch (SQLException ex) { } } throw new RuntimeException("Error updating Realms. Unable to continue Operation."); } catch (SQLException sqle) { log.error(sqle); if (connection != null) { try { connection.rollback(); } catch (SQLException ex) { } } } finally { if (connection != null) { try { connection.setAutoCommit(true); } catch (SQLException ex) { } } } } | @Override public User createUser(User bean) throws SitoolsException { checkUser(); if (!User.isValid(bean)) { throw new SitoolsException("CREATE_USER_MALFORMED"); } Connection cx = null; try { cx = ds.getConnection(); cx.setAutoCommit(false); PreparedStatement st = cx.prepareStatement(jdbcStoreResource.CREATE_USER); int i = 1; st.setString(i++, bean.getIdentifier()); st.setString(i++, bean.getFirstName()); st.setString(i++, bean.getLastName()); st.setString(i++, bean.getSecret()); st.setString(i++, bean.getEmail()); st.executeUpdate(); st.close(); createProperties(bean, cx); if (!cx.getAutoCommit()) { cx.commit(); } } catch (SQLException e) { try { cx.rollback(); } catch (SQLException e1) { e1.printStackTrace(); throw new SitoolsException("CREATE_USER ROLLBACK" + e1.getMessage(), e1); } e.printStackTrace(); throw new SitoolsException("CREATE_USER " + e.getMessage(), e); } finally { closeConnection(cx); } return getUserById(bean.getIdentifier()); } | 886,154 |
0 | protected boolean registerFromFile(URI providerList) { boolean registeredSomething = false; InputStream urlStream = null; try { urlStream = providerList.toURL().openStream(); BufferedReader reader = new BufferedReader(new InputStreamReader(urlStream, "UTF-8")); String provider; while ((provider = reader.readLine()) != null) { int comment = provider.indexOf('#'); if (comment != -1) { provider = provider.substring(0, comment); } provider = provider.trim(); if (provider.length() > 0) { try { registeredSomething |= registerAssoc(provider); } catch (Exception allElse) { if (Logging.SHOW_WARNING && LOG.isLoggable(Level.WARNING)) { LOG.log(Level.WARNING, "Failed to register \'" + provider + "\'", allElse); } } } } } catch (IOException ex) { LOG.log(Level.WARNING, "Failed to read provider list " + providerList, ex); return false; } finally { if (null != urlStream) { try { urlStream.close(); } catch (IOException ignored) { } } } return registeredSomething; } | public void run() { String baseUrl; if (_rdoSRTM3FtpUrl.getSelection()) { } else { baseUrl = _txtSRTM3HttpUrl.getText().trim(); try { final URL url = new URL(baseUrl); final HttpURLConnection urlConn = (HttpURLConnection) url.openConnection(); urlConn.connect(); final int response = urlConn.getResponseCode(); final String responseMessage = urlConn.getResponseMessage(); final String message = response == HttpURLConnection.HTTP_OK ? NLS.bind(Messages.prefPage_srtm_checkHTTPConnectionOK_message, baseUrl) : NLS.bind(Messages.prefPage_srtm_checkHTTPConnectionFAILED_message, new Object[] { baseUrl, Integer.toString(response), responseMessage == null ? UI.EMPTY_STRING : responseMessage }); MessageDialog.openInformation(Display.getCurrent().getActiveShell(), Messages.prefPage_srtm_checkHTTPConnection_title, message); } catch (final IOException e) { MessageDialog.openInformation(Display.getCurrent().getActiveShell(), Messages.prefPage_srtm_checkHTTPConnection_title, NLS.bind(Messages.prefPage_srtm_checkHTTPConnection_message, baseUrl)); e.printStackTrace(); } } } | 886,155 |
0 | private static boolean computeMovieAverages(String completePath, String MovieAveragesOutputFileName, String MovieIndexFileName) { try { File inputFile = new File(completePath + fSep + "SmartGRAPE" + fSep + MovieIndexFileName); FileChannel inC = new FileInputStream(inputFile).getChannel(); int filesize = (int) inC.size(); ByteBuffer mappedfile = inC.map(FileChannel.MapMode.READ_ONLY, 0, filesize); TShortObjectHashMap MovieLimitsTHash = new TShortObjectHashMap(17770, 1); int i = 0, totalcount = 0; short movie; int startIndex, endIndex; TIntArrayList a; while (mappedfile.hasRemaining()) { movie = mappedfile.getShort(); startIndex = mappedfile.getInt(); endIndex = mappedfile.getInt(); a = new TIntArrayList(2); a.add(startIndex); a.add(endIndex); MovieLimitsTHash.put(movie, a); } inC.close(); mappedfile = null; System.out.println("Loaded movie index hash"); File outFile = new File(completePath + fSep + "SmartGRAPE" + fSep + MovieAveragesOutputFileName); FileChannel outC = new FileOutputStream(outFile, true).getChannel(); int totalMovies = MovieLimitsTHash.size(); File movieMMAPDATAFile = new File(completePath + fSep + "SmartGRAPE" + fSep + "CustomerRatingBinaryFile.txt"); inC = new FileInputStream(movieMMAPDATAFile).getChannel(); short[] itr = MovieLimitsTHash.keys(); Arrays.sort(itr); ByteBuffer buf; for (i = 0; i < totalMovies; i++) { short currentMovie = itr[i]; a = (TIntArrayList) MovieLimitsTHash.get(currentMovie); startIndex = a.get(0); endIndex = a.get(1); if (endIndex > startIndex) { buf = ByteBuffer.allocate((endIndex - startIndex + 1) * 5); inC.read(buf, (startIndex - 1) * 5); } else { buf = ByteBuffer.allocate(5); inC.read(buf, (startIndex - 1) * 5); } buf.flip(); int bufsize = buf.capacity() / 5; float sum = 0; for (int q = 0; q < bufsize; q++) { buf.getInt(); sum += buf.get(); } ByteBuffer outbuf = ByteBuffer.allocate(6); outbuf.putShort(currentMovie); outbuf.putFloat(sum / bufsize); outbuf.flip(); outC.write(outbuf); buf.clear(); buf = null; a.clear(); a = null; } inC.close(); outC.close(); return true; } catch (Exception e) { e.printStackTrace(); return false; } } | public void removeBodyPart(int iPart) throws MessagingException, ArrayIndexOutOfBoundsException { if (DebugFile.trace) { DebugFile.writeln("Begin DBMimeMultipart.removeBodyPart(" + String.valueOf(iPart) + ")"); DebugFile.incIdent(); } DBMimeMessage oMsg = (DBMimeMessage) getParent(); DBFolder oFldr = ((DBFolder) oMsg.getFolder()); Statement oStmt = null; ResultSet oRSet = null; String sDisposition = null, sFileName = null; boolean bFound; try { oStmt = oFldr.getConnection().createStatement(ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY); if (DebugFile.trace) DebugFile.writeln("Statement.executeQuery(SELECT " + DB.id_disposition + "," + DB.file_name + " FROM " + DB.k_mime_parts + " WHERE " + DB.gu_mimemsg + "='" + oMsg.getMessageGuid() + "' AND " + DB.id_part + "=" + String.valueOf(iPart) + ")"); oRSet = oStmt.executeQuery("SELECT " + DB.id_disposition + "," + DB.file_name + " FROM " + DB.k_mime_parts + " WHERE " + DB.gu_mimemsg + "='" + oMsg.getMessageGuid() + "' AND " + DB.id_part + "=" + String.valueOf(iPart)); bFound = oRSet.next(); if (bFound) { sDisposition = oRSet.getString(1); if (oRSet.wasNull()) sDisposition = "inline"; sFileName = oRSet.getString(2); } oRSet.close(); oRSet = null; oStmt.close(); oStmt = null; if (!bFound) { if (DebugFile.trace) DebugFile.decIdent(); throw new MessagingException("Part not found"); } if (!sDisposition.equals("reference") && !sDisposition.equals("pointer")) { if (DebugFile.trace) DebugFile.decIdent(); throw new MessagingException("Only parts with reference or pointer disposition can be removed from a message"); } else { if (sDisposition.equals("reference")) { try { File oRef = new File(sFileName); if (oRef.exists()) oRef.delete(); } catch (SecurityException se) { if (DebugFile.trace) DebugFile.writeln("SecurityException " + sFileName + " " + se.getMessage()); if (DebugFile.trace) DebugFile.decIdent(); throw new MessagingException("SecurityException " + sFileName + " " + se.getMessage(), se); } } oStmt = oFldr.getConnection().createStatement(); if (DebugFile.trace) DebugFile.writeln("Statement.executeUpdate(DELETE FROM " + DB.k_mime_parts + " WHERE " + DB.gu_mimemsg + "='" + oMsg.getMessageGuid() + "' AND " + DB.id_part + "=" + String.valueOf(iPart) + ")"); oStmt.executeUpdate("DELETE FROM " + DB.k_mime_parts + " WHERE " + DB.gu_mimemsg + "='" + oMsg.getMessageGuid() + "' AND " + DB.id_part + "=" + String.valueOf(iPart)); oStmt.close(); oStmt = null; oFldr.getConnection().commit(); } } catch (SQLException sqle) { if (oRSet != null) { try { oRSet.close(); } catch (Exception ignore) { } } if (oStmt != null) { try { oStmt.close(); } catch (Exception ignore) { } } try { oFldr.getConnection().rollback(); } catch (Exception ignore) { } if (DebugFile.trace) DebugFile.decIdent(); throw new MessagingException(sqle.getMessage(), sqle); } if (DebugFile.trace) { DebugFile.decIdent(); DebugFile.writeln("End DBMimeMultipart.removeBodyPart()"); } } | 886,156 |
1 | public boolean saveVideoXMLOnWebserver() { String text = ""; boolean erg = false; try { URL url = new URL("http://localhost:8080/virtPresenterVerwalter/videofile.jsp?id=" + this.getId()); HttpURLConnection http = (HttpURLConnection) url.openConnection(); BufferedReader in = new BufferedReader(new InputStreamReader(http.getInputStream())); String zeile = ""; while ((zeile = in.readLine()) != null) { text += zeile + "\n"; } in.close(); http.disconnect(); erg = saveVideoXMLOnWebserver(text); System.err.println("Job " + this.getId() + " erfolgreich bearbeitet!"); } catch (MalformedURLException e) { System.err.println("Job " + this.getId() + ": Konnte video.xml nicht erstellen. Verbindung konnte nicht aufgebaut werden."); return false; } catch (IOException e) { System.err.println("Job " + this.getId() + ": Konnte video.xml nicht erstellen. Konnte Daten nicht lesen/schreiben."); return false; } return erg; } | static ConversionMap create(String file) { ConversionMap out = new ConversionMap(); URL url = ConversionMap.class.getResource(file); try { BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream())); String line = in.readLine(); while (line != null) { if (line.length() > 0) { String[] arr = line.split("\t"); try { double value = Double.parseDouble(arr[1]); out.put(translate(lowercase(arr[0].getBytes())), value); out.defaultValue += value; out.length = arr[0].length(); } catch (NumberFormatException e) { throw new RuntimeException("Something is wrong with in conversion file: " + e); } } line = in.readLine(); } in.close(); out.defaultValue /= Math.pow(4, out.length); } catch (Exception e) { e.printStackTrace(); throw new RuntimeException("Their was an error while reading the conversion map: " + e); } return out; } | 886,157 |
0 | public InputStream retrieveStream(String url) { HttpGet getRequest = new HttpGet(url); try { HttpResponse getResponse = client.execute(getRequest); final int statusCode = getResponse.getStatusLine().getStatusCode(); if (statusCode != HttpStatus.SC_OK) { Log.w(getClass().getSimpleName(), "Error " + statusCode + " for URL " + url); return null; } HttpEntity getResponseEntity = getResponse.getEntity(); return getResponseEntity.getContent(); } catch (IOException e) { getRequest.abort(); Log.w(getClass().getSimpleName(), "Error for URL " + url, e); } return null; } | private void writeToUrl(byte[] data, String url) throws IOException, MalformedURLException { HttpURLConnection connection = (HttpURLConnection) new URL(url).openConnection(); OutputStream out = connection.getOutputStream(); out.write(data); out.flush(); out.close(); } | 886,158 |
1 | private String SHA1(String text) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md; md = MessageDigest.getInstance("SHA-1"); byte[] sha1hash = new byte[40]; md.update(text.getBytes("iso-8859-1"), 0, text.length()); sha1hash = md.digest(); return convertToHex(sha1hash); } | private String getMD5(String data) { try { MessageDigest md5Algorithm = MessageDigest.getInstance("MD5"); md5Algorithm.update(data.getBytes(), 0, data.length()); byte[] digest = md5Algorithm.digest(); StringBuffer hexString = new StringBuffer(); String hexDigit = null; for (int i = 0; i < digest.length; i++) { hexDigit = Integer.toHexString(0xFF & digest[i]); if (hexDigit.length() < 2) { hexDigit = "0" + hexDigit; } hexString.append(hexDigit); } return hexString.toString(); } catch (NoSuchAlgorithmException ne) { return data; } } | 886,159 |
0 | @Test public void testDocumentDownloadKnowledgeBase() throws IOException { if (uploadedKbDocumentID == null) { fail("Document Upload Test should run first"); } String downloadLink = GoogleDownloadLinkGenerator.generateTextDownloadLink(uploadedKbDocumentID); URL url = new URL(downloadLink); URLConnection urlConnection = url.openConnection(); urlConnection.connect(); InputStream input = url.openStream(); FileWriter fw = new FileWriter("tmpOutput.kb"); Reader reader = new InputStreamReader(input); BufferedReader bufferedReader = new BufferedReader(reader); String strLine = ""; int count = 0; while (count < 10000) { strLine = bufferedReader.readLine(); if (strLine != null && strLine != "") { fw.write(strLine); } count++; } } | private byte[] download(String URL) { byte[] result = null; HttpEntity httpEntity = null; try { HttpGet httpGet = new HttpGet(URL); httpGet.addHeader("Accept-Language", "zh-cn,zh,en"); httpGet.addHeader("Accept-Encoding", "gzip,deflate"); HttpResponse response = httpClient.execute(httpGet); if (response.getStatusLine().getStatusCode() != 200) { return null; } Header header = response.getFirstHeader("content-type"); if (header == null || header.getValue().indexOf("text/html") < 0) { return null; } int pos = header.getValue().indexOf("charset="); if (pos >= 0) { detectedEncoding = header.getValue().substring(pos + 8); } httpEntity = response.getEntity(); InputStream in = null; in = httpEntity.getContent(); header = response.getFirstHeader("Content-Encoding"); if (null != header) { if (header.getValue().indexOf("gzip") >= 0) { in = new GZIPInputStream(in); } else if (header.getValue().indexOf("deflate") >= 0) { in = new InflaterInputStream(in, new Inflater(true)); } } ByteArrayOutputStream out = new ByteArrayOutputStream(); byte[] buffer = new byte[1024]; int len = 0; while ((len = in.read(buffer)) != -1) { out.write(buffer, 0, len); } result = out.toByteArray(); } catch (IOException ex) { LOG.warn("downloading error,abandon"); result = null; } return result; } | 886,160 |
1 | static String MD5(String text) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md; md = MessageDigest.getInstance("MD5"); byte[] md5hash = new byte[32]; md.update(text.getBytes("iso-8859-1"), 0, text.length()); md5hash = md.digest(); return convertToHex(md5hash); } | public synchronized String encrypt(final String pPassword) throws NoSuchAlgorithmException, UnsupportedEncodingException { final MessageDigest md = MessageDigest.getInstance("SHA"); md.update(pPassword.getBytes("UTF-8")); final byte raw[] = md.digest(); return BASE64Encoder.encodeBuffer(raw); } | 886,161 |
1 | public static void copyFile(String fromFilePath, String toFilePath, boolean overwrite) throws IOException { File fromFile = new File(fromFilePath); File toFile = new File(toFilePath); if (!fromFile.exists()) throw new IOException("FileCopy: " + "no such source file: " + fromFilePath); if (!fromFile.isFile()) throw new IOException("FileCopy: " + "can't copy directory: " + fromFilePath); if (!fromFile.canRead()) throw new IOException("FileCopy: " + "source file is unreadable: " + fromFilePath); if (toFile.isDirectory()) toFile = new File(toFile, fromFile.getName()); if (toFile.exists()) { if (!overwrite) { throw new IOException(toFilePath + " already exists!"); } if (!toFile.canWrite()) { throw new IOException("FileCopy: destination file is unwriteable: " + toFilePath); } String parent = toFile.getParent(); if (parent == null) { parent = System.getProperty("user.dir"); } File dir = new File(parent); if (!dir.exists()) { throw new IOException("FileCopy: destination directory doesn't exist: " + parent); } if (dir.isFile()) { throw new IOException("FileCopy: destination is not a directory: " + parent); } if (!dir.canWrite()) { throw new IOException("FileCopy: destination directory is unwriteable: " + parent); } } FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(fromFile); to = new FileOutputStream(toFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead); } finally { long lastModified = fromFile.lastModified(); toFile.setLastModified(lastModified); if (from != null) { try { from.close(); } catch (IOException e) { } } if (to != null) { try { to.close(); } catch (IOException e) { } } } } | public static void copyFolderStucture(String strPath, String dstPath) throws IOException { Constants.iLog.LogInfoLine("copying " + strPath); File src = new File(strPath); File dest = new File(dstPath); if (src.isDirectory()) { dest.mkdirs(); String list[] = src.list(); for (int i = 0; i < list.length; i++) { String dest1 = dest.getAbsolutePath() + "\\" + list[i]; String src1 = src.getAbsolutePath() + "\\" + list[i]; copyFolderStucture(src1, dest1); } } else { FileInputStream fin = new FileInputStream(src); FileOutputStream fout = new FileOutputStream(dest); int c; while ((c = fin.read()) >= 0) fout.write(c); fin.close(); fout.close(); } } | 886,162 |
0 | public String getMd5CodeOf16(String str) { StringBuffer buf = null; try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(str.getBytes()); byte b[] = md.digest(); int i; buf = new StringBuffer(""); for (int offset = 0; offset < b.length; offset++) { i = b[offset]; if (i < 0) i += 256; if (i < 16) buf.append("0"); buf.append(Integer.toHexString(i)); } } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } finally { return buf.toString().substring(8, 24); } } | public ODFSignatureService(TimeStampServiceValidator timeStampServiceValidator, RevocationDataService revocationDataService, SignatureFacet signatureFacet, InputStream documentInputStream, OutputStream documentOutputStream, TimeStampService timeStampService, String role, IdentityDTO identity, byte[] photo, DigestAlgo digestAlgo) throws Exception { super(digestAlgo); this.temporaryDataStorage = new HttpSessionTemporaryDataStorage(); this.documentOutputStream = documentOutputStream; this.tmpFile = File.createTempFile("eid-dss-", ".odf"); FileOutputStream fileOutputStream; fileOutputStream = new FileOutputStream(this.tmpFile); IOUtils.copy(documentInputStream, fileOutputStream); addSignatureFacet(new XAdESXLSignatureFacet(timeStampService, revocationDataService, getSignatureDigestAlgorithm())); addSignatureFacet(signatureFacet); XAdESSignatureFacet xadesSignatureFacet = super.getXAdESSignatureFacet(); xadesSignatureFacet.setRole(role); if (null != identity) { IdentitySignatureFacet identitySignatureFacet = new IdentitySignatureFacet(identity, photo, getSignatureDigestAlgorithm()); addSignatureFacet(identitySignatureFacet); } } | 886,163 |
0 | private File downloadPDB(String pdbId) { File tempFile = new File(path + "/" + pdbId + ".pdb.gz"); File pdbHome = new File(path); if (!pdbHome.canWrite()) { System.err.println("can not write to " + pdbHome); return null; } String ftp = String.format("ftp://ftp.ebi.ac.uk/pub/databases/msd/pdb_uncompressed/pdb%s.ent", pdbId.toLowerCase()); System.out.println("Fetching " + ftp); try { URL url = new URL(ftp); InputStream conn = url.openStream(); System.out.println("writing to " + tempFile); FileOutputStream outPut = new FileOutputStream(tempFile); GZIPOutputStream gzOutPut = new GZIPOutputStream(outPut); PrintWriter pw = new PrintWriter(gzOutPut); BufferedReader fileBuffer = new BufferedReader(new InputStreamReader(conn)); String line; while ((line = fileBuffer.readLine()) != null) { pw.println(line); } pw.flush(); pw.close(); outPut.close(); conn.close(); } catch (Exception e) { e.printStackTrace(); return null; } return tempFile; } | public static void BubbleSortInt2(int[] num) { int last_exchange; int right_border = num.length - 1; do { last_exchange = 0; for (int j = 0; j < num.length - 1; j++) { if (num[j] > num[j + 1]) { int temp = num[j]; num[j] = num[j + 1]; num[j + 1] = temp; last_exchange = j; } } right_border = last_exchange; } while (right_border > 0); } | 886,164 |
0 | public static byte[] findHead(String url) { byte[] result = new byte[0]; InputStream in = null; try { in = new URL(appendSlash(url)).openStream(); byte[] buffer = new byte[1024]; int len = -1; while ((len = in.read(buffer)) != -1) { byte[] temp = new byte[result.length + len]; System.arraycopy(result, 0, temp, 0, result.length); System.arraycopy(buffer, 0, temp, result.length, len); result = temp; if (DEBUG) { log.debug(String.format("len=%d, result.length=%d", len, result.length)); } if (result.length > 4096) { break; } if (result.length > 1024) { String s = new String(result).replaceAll("\\s+", " "); Matcher m = P_HEAD.matcher(s); if (m.find()) { break; } } } } catch (Exception e) { log.error(e.getMessage(), e); } finally { try { if (null != in) in.close(); } catch (IOException e) { } } return result; } | public static String getHash(String password, String salt) throws NoSuchAlgorithmException, UnsupportedEncodingException { logger.debug("Entering getHash with password = " + password + "\n and salt = " + salt); MessageDigest digest = MessageDigest.getInstance("SHA-512"); digest.reset(); digest.update(salt.getBytes()); byte[] input = digest.digest(password.getBytes("UTF-8")); String hashResult = String.valueOf(input); logger.debug("Exiting getHash with hasResult of " + hashResult); return hashResult; } | 886,165 |
0 | public static void main(String[] args) throws Exception { DefaultHttpClient httpclient = new DefaultHttpClient(); HttpGet httpget = new HttpGet("https://portal.sun.com/portal/dt"); HttpResponse response = httpclient.execute(httpget); HttpEntity entity = response.getEntity(); System.out.println("Login form get: " + response.getStatusLine()); if (entity != null) { entity.consumeContent(); } System.out.println("Initial set of cookies:"); List<Cookie> cookies = httpclient.getCookieStore().getCookies(); if (cookies.isEmpty()) { System.out.println("None"); } else { for (int i = 0; i < cookies.size(); i++) { System.out.println("- " + cookies.get(i).toString()); } } HttpPost httpost = new HttpPost("https://portal.sun.com/amserver/UI/Login?" + "org=self_registered_users&" + "goto=/portal/dt&" + "gotoOnFail=/portal/dt?error=true"); List<NameValuePair> nvps = new ArrayList<NameValuePair>(); nvps.add(new BasicNameValuePair("IDToken1", "username")); nvps.add(new BasicNameValuePair("IDToken2", "password")); httpost.setEntity(new UrlEncodedFormEntity(nvps, HTTP.UTF_8)); response = httpclient.execute(httpost); entity = response.getEntity(); System.out.println("Login form get: " + response.getStatusLine()); if (entity != null) { entity.consumeContent(); } System.out.println("Post logon cookies:"); cookies = httpclient.getCookieStore().getCookies(); if (cookies.isEmpty()) { System.out.println("None"); } else { for (int i = 0; i < cookies.size(); i++) { System.out.println("- " + cookies.get(i).toString()); } } } | static void copy(String src, String dest) throws IOException { File ifp = new File(src); File ofp = new File(dest); if (ifp.exists() == false) { throw new IOException("file '" + src + "' does not exist"); } FileInputStream fis = new FileInputStream(ifp); FileOutputStream fos = new FileOutputStream(ofp); byte[] b = new byte[1024]; while (fis.read(b) > 0) fos.write(b); fis.close(); fos.close(); } | 886,166 |
1 | public void format(File source, File target) { if (!source.exists()) { throw new IllegalArgumentException("Source '" + source + " doesn't exist"); } if (!source.isFile()) { throw new IllegalArgumentException("Source '" + source + " is not a file"); } target.mkdirs(); String fileExtension = source.getName().substring(source.getName().lastIndexOf(".") + 1); String _target = source.getName().replace(fileExtension, "html"); target = new File(target.getPath() + "/" + _target); try { Reader reader = new FileReader(source); Writer writer = new FileWriter(target); this.format(reader, writer); } catch (Exception e) { e.printStackTrace(); } } | @Test public void testWriteAndRead() throws Exception { JCFS.configureLoopback(dir); RFile file = new RFile("testreadwrite.txt"); RFileOutputStream out = new RFileOutputStream(file); out.write("test".getBytes("utf-8")); out.close(); RFileInputStream in = new RFileInputStream(file); byte[] buffer = new byte[4]; int readCount = in.read(buffer); in.close(); assertEquals(4, readCount); String resultRead = new String(buffer, "utf-8"); assertEquals("test", resultRead); } | 886,167 |
0 | private static List<CountryEntry> retrieveCountries() throws IOException { URL url = new URL("http://" + ISO_3166_HOST + ISO_3166_TXT_FILE_PATH); BufferedReader input = new BufferedReader(new InputStreamReader(url.openStream())); List<CountryEntry> countries = new LinkedList<CountryEntry>(); boolean parsing = false; int trCount = 0; int tdCount = 0; CountryEntry current = new CountryEntry(); String nextLine = input.readLine(); while (nextLine != null) { if (nextLine.startsWith("<table")) { parsing = true; } if (nextLine.startsWith("</table>")) { break; } if (parsing) { if (nextLine.startsWith("<tr")) { trCount++; } else { if ((trCount > 1 && nextLine.startsWith("<td"))) { tdCount++; String data = pullData(nextLine); switch(tdCount) { case 1: current.setName(getCountryName(data)); break; case 2: current.setNumber(data); break; case 3: current.setAlpha3(data); break; case 4: current.setAlpha2(data); break; case 5: countries.add(current); current = new CountryEntry(); tdCount = 0; break; default: String msg = "Parsing error. Unexpected column: [" + data + "]"; throw new IllegalStateException(msg); } } } } nextLine = input.readLine(); } input.close(); return countries; } | public byte[] getHash(String plaintext) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest digest = MessageDigest.getInstance("SHA-1"); digest.reset(); digest.update(salt.getBytes("UTF-8")); return digest.digest(plaintext.getBytes("UTF-8")); } | 886,168 |
0 | private void chooseGame(DefaultHttpClient httpclient) throws IOException, ClientProtocolException { HttpGet httpget = new HttpGet(Constants.STRATEGICDOMINATION_URL + "/gameboard.cgi?gameid=" + 1687); HttpResponse response = httpclient.execute(httpget); HttpEntity entity = response.getEntity(); System.out.println("cg form get: " + response.getStatusLine()); if (entity != null) { InputStream inStream = entity.getContent(); IOUtils.copy(inStream, System.out); } System.out.println("cg set of cookies:"); List<Cookie> cookies = httpclient.getCookieStore().getCookies(); if (cookies.isEmpty()) { System.out.println("None"); } else { for (int i = 0; i < cookies.size(); i++) { System.out.println("- " + cookies.get(i).toString()); } } } | public static void postData(Reader data, URL endpoint, Writer output) throws Exception { HttpURLConnection urlc = null; try { urlc = (HttpURLConnection) endpoint.openConnection(); try { urlc.setRequestMethod("POST"); } catch (ProtocolException e) { throw new Exception("Shouldn't happen: HttpURLConnection doesn't support POST??", e); } urlc.setDoOutput(true); urlc.setDoInput(true); urlc.setUseCaches(false); urlc.setAllowUserInteraction(false); urlc.setRequestProperty("Content-type", "text/xml; charset=" + "UTF-8"); OutputStream out = urlc.getOutputStream(); try { Writer writer = new OutputStreamWriter(out, "UTF-8"); pipe(data, writer); writer.close(); } catch (IOException e) { throw new Exception("IOException while posting data", e); } finally { if (out != null) { out.close(); } } InputStream in = urlc.getInputStream(); try { Reader reader = new InputStreamReader(in); pipe(reader, output); reader.close(); } catch (IOException e) { throw new Exception("IOException while reading response", e); } finally { if (in != null) { in.close(); } } } catch (IOException e) { throw new Exception("Connection error (is server running at " + endpoint + " ?): " + e); } finally { if (urlc != null) { urlc.disconnect(); } } } | 886,169 |
1 | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 886,170 |
0 | public InputStream getInputStream() throws java.io.IOException { if (!_urlString.endsWith("!/")) return super.getInputStream(); URL url = new URL(_urlString.substring(4, _urlString.length() - 2)); return url.openStream(); } | protected BufferedReader getDataReader() { BufferedReader in = null; PrintWriter out = null; try { String line; URL url = new URL(this.catalog.getCatalogURL()); Debug.output("Catalog URL:" + url.toString()); in = new BufferedReader(new InputStreamReader(url.openStream())); File dir = (File) SessionHandler.getServletContext().getAttribute("javax.servlet.context.tempdir"); File temp = new File(dir, TEMP); Debug.output("Temp file:" + temp.toString()); out = new PrintWriter(new BufferedWriter(new FileWriter(temp))); while ((line = in.readLine()) != null) { out.println(line); } Debug.output("Temp file size:" + temp.length()); return new BufferedReader(new FileReader(temp)); } catch (IOException e) { throw new SeismoException(e); } finally { Util.close(in); Util.close(out); } } | 886,171 |
0 | private String getMD5(String data) { try { MessageDigest md5Algorithm = MessageDigest.getInstance("MD5"); md5Algorithm.update(data.getBytes(), 0, data.length()); byte[] digest = md5Algorithm.digest(); StringBuffer hexString = new StringBuffer(); String hexDigit = null; for (int i = 0; i < digest.length; i++) { hexDigit = Integer.toHexString(0xFF & digest[i]); if (hexDigit.length() < 2) { hexDigit = "0" + hexDigit; } hexString.append(hexDigit); } return hexString.toString(); } catch (NoSuchAlgorithmException ne) { return data; } } | public static void main(String[] args) throws Exception { DES des = new DES(); StreamBlockReader reader = new StreamBlockReader(new FileInputStream("D:\\test.txt")); StreamBlockWriter writer = new StreamBlockWriter(new FileOutputStream("D:\\test1.txt")); SingleKey key = new SingleKey(new Block(64), ""); key = new SingleKey(new Block("1111111100000000111111110000000011111111000000001111111100000000"), ""); Mode mode = new ECBDESMode(des); des.encrypt(reader, writer, key, mode); } | 886,172 |
0 | private synchronized void awaitResponse() throws BOSHException { HttpEntity entity = null; try { HttpResponse httpResp = client.execute(post, context); entity = httpResp.getEntity(); byte[] data = EntityUtils.toByteArray(entity); String encoding = entity.getContentEncoding() != null ? entity.getContentEncoding().getValue() : null; if (ZLIBCodec.getID().equalsIgnoreCase(encoding)) { data = ZLIBCodec.decode(data); } else if (GZIPCodec.getID().equalsIgnoreCase(encoding)) { data = GZIPCodec.decode(data); } body = StaticBody.fromString(new String(data, CHARSET)); statusCode = httpResp.getStatusLine().getStatusCode(); sent = true; } catch (IOException iox) { abort(); toThrow = new BOSHException("Could not obtain response", iox); throw (toThrow); } catch (RuntimeException ex) { abort(); throw (ex); } } | private void sort() { boolean unsortiert = true; Datei tmp = null; while (unsortiert) { unsortiert = false; for (int i = 0; i < this.size - 1; i++) { if (dateien[i] != null && dateien[i + 1] != null) { if (dateien[i].compareTo(dateien[i + 1]) < 0) { tmp = dateien[i]; dateien[i] = dateien[i + 1]; dateien[i + 1] = tmp; unsortiert = true; } } } } } | 886,173 |
0 | public static String getMD5(final String text) { if (null == text) return null; final MessageDigest algorithm; try { algorithm = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { throw new RuntimeException(e); } algorithm.reset(); algorithm.update(text.getBytes()); final byte[] digest = algorithm.digest(); final StringBuffer hexString = new StringBuffer(); for (byte b : digest) { String str = Integer.toHexString(0xFF & b); str = str.length() == 1 ? '0' + str : str; hexString.append(str); } return hexString.toString(); } | protected void copyAndDelete(final URL _src, final long _temp) throws IOException { final File storage = getStorageFile(_src, _temp); final File dest = new File(_src.getFile()); FileChannel in = null; FileChannel out = null; if (storage.equals(dest)) { return; } try { readWriteLock_.lockWrite(); if (dest.exists()) { dest.delete(); } if (storage.exists() && !storage.renameTo(dest)) { in = new FileInputStream(storage).getChannel(); out = new FileOutputStream(dest).getChannel(); final long len = in.size(); final long copied = out.transferFrom(in, 0, in.size()); if (len != copied) { throw new IOException("unable to complete write"); } } } finally { readWriteLock_.unlockWrite(); try { if (in != null) { in.close(); } } catch (final IOException _evt) { FuLog.error(_evt); } try { if (out != null) { out.close(); } } catch (final IOException _evt) { FuLog.error(_evt); } storage.delete(); } } | 886,174 |
1 | public static String encrypt(String text) { MessageDigest md = null; try { md = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException ex) { throw new WebDocRuntimeException(ex); } md.update(text.getBytes()); BigInteger hash = new BigInteger(1, md.digest()); return hash.toString(HEX); } | public static String toMD5String(String plainText) { if (TextUtils.isEmpty(plainText)) { plainText = ""; } StringBuilder text = new StringBuilder(); for (int i = plainText.length() - 1; i >= 0; i--) { text.append(plainText.charAt(i)); } plainText = text.toString(); MessageDigest mDigest; try { mDigest = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { return plainText; } mDigest.update(plainText.getBytes()); byte d[] = mDigest.digest(); StringBuffer hash = new StringBuffer(); for (int i = 0; i < d.length; i++) { hash.append(Integer.toHexString(0xFF & d[i])); } return hash.toString(); } | 886,175 |
1 | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | public static boolean copy(File from, File to, Override override) throws IOException { FileInputStream in = null; FileOutputStream out = null; FileChannel srcChannel = null; FileChannel destChannel = null; if (override == null) override = Override.NEWER; switch(override) { case NEVER: if (to.isFile()) return false; break; case NEWER: if (to.isFile() && (from.lastModified() - LASTMODIFIED_DIFF_MILLIS) < to.lastModified()) return false; break; } to.getParentFile().mkdirs(); try { in = new FileInputStream(from); out = new FileOutputStream(to); srcChannel = in.getChannel(); destChannel = out.getChannel(); long position = 0L; long count = srcChannel.size(); while (position < count) { long chunk = Math.min(MAX_IO_CHUNK_SIZE, count - position); position += destChannel.transferFrom(srcChannel, position, chunk); } to.setLastModified(from.lastModified()); return true; } finally { CommonUtils.close(srcChannel); CommonUtils.close(destChannel); CommonUtils.close(out); CommonUtils.close(in); } } | 886,176 |
0 | public static void BubbleSortByte2(byte[] num) { int last_exchange; int right_border = num.length - 1; do { last_exchange = 0; for (int j = 0; j < num.length - 1; j++) { if (num[j] > num[j + 1]) { byte temp = num[j]; num[j] = num[j + 1]; num[j + 1] = temp; last_exchange = j; } } right_border = last_exchange; } while (right_border > 0); } | private void initURL() { try { log.fine("Checking: " + locator); URLConnection conn = URIFactory.url(locator).openConnection(); conn.setUseCaches(false); log.info(conn.getHeaderFields().toString()); String header = conn.getHeaderField(null); if (header.contains("404")) { log.info("404 file not found: " + locator); return; } if (header.contains("500")) { log.info("500 server error: " + locator); return; } if (conn.getContentLength() > 0) { byte[] buffer = new byte[50]; conn.getInputStream().read(buffer); if (new String(buffer).trim().startsWith("<!DOCTYPE")) return; } else if (conn.getContentLength() == 0) { exists = true; return; } exists = true; length = conn.getContentLength(); } catch (Exception ioe) { System.err.println(ioe); } } | 886,177 |
0 | public static String md5Encrypt(final String txt) { String enTxt = txt; MessageDigest md = null; try { md = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { logger.error("Error:", e); } if (null != md) { byte[] md5hash = new byte[32]; try { md.update(txt.getBytes("UTF-8"), 0, txt.length()); } catch (UnsupportedEncodingException e) { logger.error("Error:", e); } md5hash = md.digest(); StringBuffer md5StrBuff = new StringBuffer(); for (int i = 0; i < md5hash.length; i++) { if (Integer.toHexString(0xFF & md5hash[i]).length() == 1) { md5StrBuff.append("0").append(Integer.toHexString(0xFF & md5hash[i])); } else { md5StrBuff.append(Integer.toHexString(0xFF & md5hash[i])); } } enTxt = md5StrBuff.toString(); } return enTxt; } | public static URL[] getURLsForAllJars(URL url, File tmpDir) { FileInputStream fin = null; InputStream in = null; ZipInputStream zin = null; try { ArrayList array = new ArrayList(); in = url.openStream(); String fileName = url.getFile(); int index = fileName.lastIndexOf('/'); if (index != -1) { fileName = fileName.substring(index + 1); } final File f = createTempFile(fileName, in, tmpDir); fin = (FileInputStream) org.apache.axis2.java.security.AccessController.doPrivileged(new PrivilegedExceptionAction() { public Object run() throws FileNotFoundException { return new FileInputStream(f); } }); array.add(f.toURL()); zin = new ZipInputStream(fin); ZipEntry entry; String entryName; while ((entry = zin.getNextEntry()) != null) { entryName = entry.getName(); if ((entryName != null) && entryName.toLowerCase().startsWith("lib/") && entryName.toLowerCase().endsWith(".jar")) { String suffix = entryName.substring(4); File f2 = createTempFile(suffix, zin, tmpDir); array.add(f2.toURL()); } } return (URL[]) array.toArray(new URL[array.size()]); } catch (Exception e) { throw new RuntimeException(e); } finally { if (fin != null) { try { fin.close(); } catch (IOException e) { } } if (in != null) { try { in.close(); } catch (IOException e) { } } if (zin != null) { try { zin.close(); } catch (IOException e) { } } } } | 886,178 |
1 | public void copiarMidias(final File vidDir, final File imgDir) { for (int i = 0; i < getMidias().size(); i++) { try { FileChannel src = new FileInputStream(getMidias().get(i).getUrl().trim()).getChannel(); FileChannel dest; if (getMidias().get(i).getTipo().equals("video")) { FileChannel vidDest = new FileOutputStream(vidDir + "/" + processaString(getMidias().get(i).getTitulo()) + "." + retornaExtensaoMidia(getMidias().get(i))).getChannel(); dest = vidDest; } else { FileChannel midDest = new FileOutputStream(imgDir + "/" + processaString(getMidias().get(i).getTitulo()) + "." + retornaExtensaoMidia(getMidias().get(i))).getChannel(); dest = midDest; } dest.transferFrom(src, 0, src.size()); src.close(); dest.close(); } catch (Exception e) { System.err.print(e.getMessage()); e.printStackTrace(); } } } | public static String stringOfUrl(String addr) throws IOException { ByteArrayOutputStream output = new ByteArrayOutputStream(); URL url = new URL(addr); IOUtils.copy(url.openStream(), output); return output.toString(); } | 886,179 |
0 | public void copyContent(long mailId1, long mailId2) throws Exception { File file1 = new File(this.getMailDir(mailId1) + "/"); File file2 = new File(this.getMailDir(mailId2) + "/"); this.recursiveDir(file2); if (file1.isDirectory()) { File[] files = file1.listFiles(); if (files != null) { for (int i = 0; i < files.length; i++) { if (files[i].isFile()) { File file2s = new File(file2.getAbsolutePath() + "/" + files[i].getName()); if (!file2s.exists()) { file2s.createNewFile(); BufferedOutputStream out = new BufferedOutputStream(new FileOutputStream(file2s)); BufferedInputStream in = new BufferedInputStream(new FileInputStream(files[i])); int read; while ((read = in.read()) != -1) { out.write(read); } out.flush(); if (in != null) { try { in.close(); } catch (IOException ex1) { ex1.printStackTrace(); } } if (out != null) { try { out.close(); } catch (IOException ex) { ex.printStackTrace(); } } } } } } } } | private static String calculateMD5(String s) { try { MessageDigest m = MessageDigest.getInstance("MD5"); m.reset(); m.update(s.getBytes()); return new BigInteger(1, m.digest()).toString(16); } catch (NoSuchAlgorithmException e) { throw new UndeclaredThrowableException(e); } } | 886,180 |
1 | private void copy(File source, File dest) throws IOException { FileChannel in = null; FileChannel out = null; try { in = new FileInputStream(source).getChannel(); out = new FileOutputStream(dest).getChannel(); long size = in.size(); MappedByteBuffer buf = in.map(FileChannel.MapMode.READ_ONLY, 0, size); out.write(buf); } finally { close(in); close(out); } } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 886,181 |
0 | public void testAuthentication() throws Exception { String host = "localhost"; int port = DEFAULT_PORT; URL url = new URL("http://" + host + ":" + port + "/"); URLConnection connection = url.openConnection(); InputStream in = connection.getInputStream(); in.close(); waitToStop(); server.setAttribute(name, new Attribute("AuthenticationMethod", "basic")); server.invoke(name, "addAuthorization", new Object[] { "mx4j", "mx4j" }, new String[] { "java.lang.String", "java.lang.String" }); server.invoke(name, "start", null, null); url = new URL("http://" + host + ":" + port + "/"); connection = url.openConnection(); try { in = connection.getInputStream(); } catch (Exception e) { } finally { in.close(); } assertEquals(((HttpURLConnection) connection).getResponseCode(), 401); url = new URL("http://" + host + ":" + port + "/"); connection = url.openConnection(); connection.setRequestProperty("Authorization", "basic bXg0ajpteDRq"); in = connection.getInputStream(); in.close(); waitToStop(); server.setAttribute(name, new Attribute("AuthenticationMethod", "none")); } | public static void getResponseAsStream(String _url, Object _stringOrStream, OutputStream _stream, Map _headers, Map _params, String _contentType, int _timeout) throws IOException { if (_url == null || _url.length() <= 0) throw new IllegalArgumentException("Url can not be null."); String temp = _url.toLowerCase(); if (!temp.startsWith("http://") && !temp.startsWith("https://")) _url = "http://" + _url; HttpMethod method = null; if (_stringOrStream == null && (_params == null || _params.size() <= 0)) method = new GetMethod(_url); else method = new PostMethod(_url); HttpMethodParams params = ((HttpMethodBase) method).getParams(); if (params == null) { params = new HttpMethodParams(); ((HttpMethodBase) method).setParams(params); } if (_timeout < 0) params.setSoTimeout(0); else params.setSoTimeout(_timeout); if (_contentType != null && _contentType.length() > 0) { if (_headers == null) _headers = new HashMap(); _headers.put("Content-Type", _contentType); } if (_headers != null) { Iterator iter = _headers.entrySet().iterator(); while (iter.hasNext()) { Map.Entry entry = (Map.Entry) iter.next(); method.setRequestHeader((String) entry.getKey(), (String) entry.getValue()); } } if (method instanceof PostMethod && (_params != null && _params.size() > 0)) { Iterator iter = _params.entrySet().iterator(); while (iter.hasNext()) { Map.Entry entry = (Map.Entry) iter.next(); ((PostMethod) method).addParameter((String) entry.getKey(), (String) entry.getValue()); } } if (method instanceof EntityEnclosingMethod && _stringOrStream != null) { if (_stringOrStream instanceof InputStream) { RequestEntity entity = new InputStreamRequestEntity((InputStream) _stringOrStream); ((EntityEnclosingMethod) method).setRequestEntity(entity); } else { RequestEntity entity = new StringRequestEntity(_stringOrStream.toString(), _contentType, null); ((EntityEnclosingMethod) method).setRequestEntity(entity); } } HttpClient httpClient = new HttpClient(new org.apache.commons.httpclient.SimpleHttpConnectionManager()); try { int status = httpClient.executeMethod(method); if (status != HttpStatus.SC_OK) { if (status >= 500 && status < 600) throw new IOException("Remote service<" + _url + "> respose a error, status:" + status); } InputStream instream = method.getResponseBodyAsStream(); IOUtils.copy(instream, _stream); instream.close(); } catch (IOException err) { throw err; } finally { if (method != null) method.releaseConnection(); } } | 886,182 |
0 | private byte[] getBytes(String resource) throws IOException { InputStream is = HttpServletFileDownloadTest.class.getResourceAsStream(resource); ByteArrayOutputStream out = new ByteArrayOutputStream(); IOUtils.copy(is, out); IOUtils.closeQuietly(is); return out.toByteArray(); } | public static boolean validPassword(String password, String passwordInDb) throws NoSuchAlgorithmException, UnsupportedEncodingException { byte[] pwdInDb = hexStringToByte(passwordInDb); byte[] salt = new byte[SALT_LENGTH]; System.arraycopy(pwdInDb, 0, salt, 0, SALT_LENGTH); MessageDigest md = MessageDigest.getInstance("MD5"); md.update(salt); md.update(password.getBytes("UTF-8")); byte[] digest = md.digest(); byte[] digestInDb = new byte[pwdInDb.length - SALT_LENGTH]; System.arraycopy(pwdInDb, SALT_LENGTH, digestInDb, 0, digestInDb.length); if (Arrays.equals(digest, digestInDb)) { return true; } else { return false; } } | 886,183 |
1 | @Override public void actionPerformed(ActionEvent event) { if (event.getSource() == btnChange) { Error.log(7002, "Bot�o alterar pressionado por " + login + "."); if (new String(passwordUser1.getPassword()).compareTo("") == 0) { JOptionPane.showMessageDialog(null, "Campo senha requerido"); passwordUser1.setFocusable(true); return; } String password1 = new String(passwordUser1.getPassword()); String password2 = new String(passwordUser2.getPassword()); if (password1.compareTo(password2) != 0) { JOptionPane.showMessageDialog(null, "Senhas n�o casam"); passwordUser1.setText(""); passwordUser2.setText(""); passwordUser1.setFocusable(true); return; } char c = passwordUser1.getPassword()[0]; int j = 1; for (j = 1; j < password1.length(); j++) { if (passwordUser1.getPassword()[j] != c) { break; } c = passwordUser1.getPassword()[j]; } if (j == password1.length()) { JOptionPane.showMessageDialog(null, "Senha fraca"); return; } if (password1.length() < 6) { JOptionPane.showMessageDialog(null, "Senha deve ter mais que 6 digitos"); return; } if (numPasswordOneUseUser.getText().compareTo("") == 0) { JOptionPane.showMessageDialog(null, "Campo n�mero de senhas de uso �nico requerido"); return; } if (!(Integer.parseInt(numPasswordOneUseUser.getText()) > 0 && Integer.parseInt(numPasswordOneUseUser.getText()) < 41)) { JOptionPane.showMessageDialog(null, "N�mero de senhas de uso �nico entre 1 e 40"); return; } String outputDigest = ""; try { MessageDigest messageDigest = MessageDigest.getInstance("SHA1"); messageDigest.update(password1.getBytes()); BigInteger bigInt = new BigInteger(1, messageDigest.digest()); outputDigest = bigInt.toString(16); } catch (NoSuchAlgorithmException exception) { exception.printStackTrace(); } Statement stmt; String sql; sql = "update Usuarios set password = '" + outputDigest + "' where login='" + login + "'"; try { theConn = DatabaseConnection.getConnection(); stmt = theConn.createStatement(); stmt.executeUpdate(sql); stmt.close(); } catch (Exception exception) { exception.printStackTrace(); } finally { try { if (theConn != null) theConn.close(); } catch (Exception exception) { } } sql = "delete from Senhas_De_Unica_Vez where login='" + login + "'"; try { theConn = DatabaseConnection.getConnection(); stmt = theConn.createStatement(); stmt.executeUpdate(sql); stmt.close(); } catch (Exception exception) { exception.printStackTrace(); } finally { try { if (theConn != null) theConn.close(); } catch (Exception exception) { } } Random rn = new Random(); int r; Vector<Integer> passwordVector = new Vector<Integer>(); for (int i = 0; i < Integer.parseInt(numPasswordOneUseUser.getText()); i++) { r = rn.nextInt() % 10000; if (r < 0) r = r * (-1); passwordVector.add(r); } try { BufferedWriter out = new BufferedWriter(new FileWriter(login + ".txt", false)); for (int i = 0; i < Integer.parseInt(numPasswordOneUseUser.getText()); i++) { out.append("" + i + " " + passwordVector.get(i) + "\n"); } out.close(); try { for (int i = 0; i < Integer.parseInt(numPasswordOneUseUser.getText()); i++) { MessageDigest messageDigest = MessageDigest.getInstance("SHA1"); messageDigest.update(passwordVector.get(i).toString().getBytes()); BigInteger bigInt = new BigInteger(1, messageDigest.digest()); String digest = bigInt.toString(16); sql = "insert into Senhas_De_Unica_Vez (login,key,password) values " + "('" + login + "'," + i + ",'" + digest + "')"; try { theConn = DatabaseConnection.getConnection(); stmt = theConn.createStatement(); stmt.executeUpdate(sql); stmt.close(); } catch (Exception exception) { exception.printStackTrace(); } finally { try { if (theConn != null) theConn.close(); } catch (Exception exception) { } } } } catch (NoSuchAlgorithmException exception) { exception.printStackTrace(); } } catch (IOException exception) { exception.printStackTrace(); } JOptionPane.showMessageDialog(null, "Usu�rio " + login + " foi alterado com sucesso."); dispose(); } if (event.getSource() == btnCancel) { Error.log(7003, "Bot�o voltar de alterar para o menu principal pressionado por " + login + "."); dispose(); } } | public static String genetateSHA256(String password) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md = MessageDigest.getInstance("SHA-256"); md.update(password.getBytes("UTF-8")); byte[] passWd = md.digest(); String hex = toHex(passWd); return hex; } | 886,184 |
0 | public void createMd5Hash() { try { String vcardObject = new ContactToVcard(TimeZone.getTimeZone("UTC"), "UTF-8").convert(this); MessageDigest m = MessageDigest.getInstance("MD5"); m.update(vcardObject.getBytes()); this.md5Hash = new BigInteger(m.digest()).toString(); if (log.isTraceEnabled()) { log.trace("Hash is:" + this.md5Hash); } } catch (ConverterException ex) { log.error("Error creating hash:" + ex.getMessage()); } catch (NoSuchAlgorithmException noSuchAlgorithmException) { log.error("Error creating hash:" + noSuchAlgorithmException.getMessage()); } } | private void removeSessionId(InputStream inputStream, Output output) throws IOException { String jsessionid = RewriteUtils.getSessionId(target); boolean textContentType = ResourceUtils.isTextContentType(httpClientResponse.getHeader(HttpHeaders.CONTENT_TYPE), target.getDriver().getConfiguration().getParsableContentTypes()); if (jsessionid == null || !textContentType) { IOUtils.copy(inputStream, output.getOutputStream()); } else { String charset = httpClientResponse.getContentCharset(); if (charset == null) { charset = "ISO-8859-1"; } String content = IOUtils.toString(inputStream, charset); content = removeSessionId(jsessionid, content); if (output.getHeader(HttpHeaders.CONTENT_LENGTH) != null) { output.setHeader(HttpHeaders.CONTENT_LENGTH, Integer.toString(content.length())); } OutputStream outputStream = output.getOutputStream(); IOUtils.write(content, outputStream, charset); } inputStream.close(); } | 886,185 |
1 | public void writeTo(OutputStream out) throws IOException, MessagingException { InputStream in = getInputStream(); Base64OutputStream base64Out = new Base64OutputStream(out); IOUtils.copy(in, base64Out); base64Out.close(); mFile.delete(); } | public void Copy() throws IOException { if (!FileDestination.exists()) { FileDestination.createNewFile(); } FileChannel source = null; FileChannel destination = null; try { source = new FileInputStream(FileSource).getChannel(); destination = new FileOutputStream(FileDestination).getChannel(); destination.transferFrom(source, 0, source.size()); } finally { if (source != null) { source.close(); } if (destination != null) { destination.close(); } } } | 886,186 |
0 | private void trySend(Primitive p) throws IOException { ByteArrayOutputStream out = new ByteArrayOutputStream(); try { mSerializer.serialize(p, out); } catch (SerializerException e) { mTxManager.notifyErrorResponse(p.getTransactionID(), ImErrorInfo.SERIALIZER_ERROR, "Internal serializer error, primitive: " + p.getType()); out.close(); return; } HttpPost req = new HttpPost(mPostUri); req.addHeader(mContentTypeHeader); if (mMsisdnHeader != null) { req.addHeader(mMsisdnHeader); } ByteArrayEntity entity = new ByteArrayEntity(out.toByteArray()); req.setEntity(entity); mLastActive = SystemClock.elapsedRealtime(); if (Log.isLoggable(ImpsLog.TAG, Log.DEBUG)) { long sendBytes = entity.getContentLength() + 176; ImpsLog.log(mConnection.getLoginUserName() + " >> " + p.getType() + " HTTP payload approx. " + sendBytes + " bytes"); } if (Log.isLoggable(ImpsLog.PACKET_TAG, Log.DEBUG)) { ImpsLog.dumpRawPacket(out.toByteArray()); ImpsLog.dumpPrimitive(p); } HttpResponse res = mHttpClient.execute(req); StatusLine statusLine = res.getStatusLine(); HttpEntity resEntity = res.getEntity(); InputStream in = resEntity.getContent(); if (Log.isLoggable(ImpsLog.PACKET_TAG, Log.DEBUG)) { Log.d(ImpsLog.PACKET_TAG, statusLine.toString()); Header[] headers = res.getAllHeaders(); for (Header h : headers) { Log.d(ImpsLog.PACKET_TAG, h.toString()); } int len = (int) resEntity.getContentLength(); if (len > 0) { byte[] content = new byte[len]; int offset = 0; int bytesRead = 0; do { bytesRead = in.read(content, offset, len); offset += bytesRead; len -= bytesRead; } while (bytesRead > 0); in.close(); ImpsLog.dumpRawPacket(content); in = new ByteArrayInputStream(content); } } try { if (statusLine.getStatusCode() != HttpURLConnection.HTTP_OK) { mTxManager.notifyErrorResponse(p.getTransactionID(), statusLine.getStatusCode(), statusLine.getReasonPhrase()); return; } if (resEntity.getContentLength() == 0) { if ((p.getTransactionMode() != TransactionMode.Response) && !p.getType().equals(ImpsTags.Polling_Request)) { mTxManager.notifyErrorResponse(p.getTransactionID(), ImErrorInfo.ILLEGAL_SERVER_RESPONSE, "bad response from server"); } return; } Primitive response = mParser.parse(in); if (Log.isLoggable(ImpsLog.PACKET_TAG, Log.DEBUG)) { ImpsLog.dumpPrimitive(response); } if (Log.isLoggable(ImpsLog.TAG, Log.DEBUG)) { long len = 2 + resEntity.getContentLength() + statusLine.toString().length() + 2; Header[] headers = res.getAllHeaders(); for (Header header : headers) { len += header.getName().length() + header.getValue().length() + 4; } ImpsLog.log(mConnection.getLoginUserName() + " << " + response.getType() + " HTTP payload approx. " + len + "bytes"); } if (!mReceiveQueue.offer(response)) { mTxManager.notifyErrorResponse(p.getTransactionID(), ImErrorInfo.UNKNOWN_ERROR, "receiving queue full"); } } catch (ParserException e) { ImpsLog.logError(e); mTxManager.notifyErrorResponse(p.getTransactionID(), ImErrorInfo.PARSER_ERROR, "Parser error, received a bad response from server"); } finally { resEntity.consumeContent(); } } | public APIResponse delete(String id) throws Exception { APIResponse response = new APIResponse(); connection = (HttpURLConnection) new URL(url + "/api/transaction/delete/" + id).openConnection(); connection.setRequestMethod("DELETE"); connection.setConnectTimeout(TIMEOUT); connection.connect(); if (connection.getResponseCode() == HttpURLConnection.HTTP_OK) { response.setDone(true); response.setMessage("Transaction Deleted!"); } else { response.setDone(false); response.setMessage("Delete Transaction Error Code: Http (" + connection.getResponseCode() + ")"); } connection.disconnect(); return response; } | 886,187 |
1 | public static void copyFile(File fromFile, File toFile) throws OWFileCopyException { try { FileChannel src = new FileInputStream(fromFile).getChannel(); FileChannel dest = new FileOutputStream(toFile).getChannel(); dest.transferFrom(src, 0, src.size()); src.close(); dest.close(); } catch (IOException e) { throw (new OWFileCopyException("An error occurred while copying a file", e)); } } | private File getTempFile(DigitalObject object, String pid) throws Exception { File directory = new File(tmpDir, object.getId()); File target = new File(directory, pid); if (!target.exists()) { target.getParentFile().mkdirs(); target.createNewFile(); } Payload payload = object.getPayload(pid); InputStream in = payload.open(); FileOutputStream out = null; try { out = new FileOutputStream(target); IOUtils.copyLarge(in, out); } catch (Exception ex) { close(out); target.delete(); payload.close(); throw ex; } close(out); payload.close(); return target; } | 886,188 |
1 | public String loadURLString(java.net.URL url) { try { BufferedReader br = new BufferedReader(new InputStreamReader(url.openStream())); StringBuffer buf = new StringBuffer(); String s = ""; while (br.ready() && s != null) { s = br.readLine(); if (s != null) { buf.append(s); buf.append("\n"); } } return buf.toString(); } catch (IOException ex) { return ""; } catch (NullPointerException npe) { return ""; } } | @Override protected void processImport() throws SudokuInvalidFormatException { importFolder(mUri.getLastPathSegment()); try { URL url = new URL(mUri.toString()); InputStreamReader isr = new InputStreamReader(url.openStream()); BufferedReader br = null; try { br = new BufferedReader(isr); String s; while ((s = br.readLine()) != null) { if (!s.equals("")) { importGame(s); } } } finally { if (br != null) br.close(); } } catch (MalformedURLException e) { throw new RuntimeException(e); } catch (IOException e) { throw new RuntimeException(e); } } | 886,189 |
1 | public static final boolean compressToZip(final String sSource, final String sDest, final boolean bDeleteSourceOnSuccess) { ZipOutputStream os = null; InputStream is = null; try { os = new ZipOutputStream(new FileOutputStream(sDest)); is = new FileInputStream(sSource); final byte[] buff = new byte[1024]; int r; String sFileName = sSource; if (sFileName.indexOf('/') >= 0) sFileName = sFileName.substring(sFileName.lastIndexOf('/') + 1); os.putNextEntry(new ZipEntry(sFileName)); while ((r = is.read(buff)) > 0) os.write(buff, 0, r); is.close(); os.flush(); os.closeEntry(); os.close(); } catch (Throwable e) { Log.log(Log.WARNING, "lazyj.Utils", "compressToZip : cannot compress '" + sSource + "' to '" + sDest + "' because", e); return false; } finally { if (is != null) { try { is.close(); } catch (IOException ioe) { } } if (os != null) { try { os.close(); } catch (IOException ioe) { } } } if (bDeleteSourceOnSuccess) try { if (!(new File(sSource)).delete()) Log.log(Log.WARNING, "lazyj.Utils", "compressToZip: could not delete original file (" + sSource + ")"); } catch (SecurityException se) { Log.log(Log.ERROR, "lazyj.Utils", "compressToZip: security constraints prevents file deletion"); } return true; } | public static void fastBackup(File file) { FileChannel in = null; FileChannel out = null; FileInputStream fin = null; FileOutputStream fout = null; try { in = (fin = new FileInputStream(file)).getChannel(); out = (fout = new FileOutputStream(file.getAbsolutePath() + ".bak")).getChannel(); in.transferTo(0, in.size(), out); } catch (IOException e) { Logging.getErrorLog().reportError("Fast backup failure (" + file.getAbsolutePath() + "): " + e.getMessage()); } finally { if (fin != null) { try { fin.close(); } catch (IOException e) { Logging.getErrorLog().reportException("Failed to close file input stream", e); } } if (fout != null) { try { fout.close(); } catch (IOException e) { Logging.getErrorLog().reportException("Failed to close file output stream", e); } } if (in != null) { try { in.close(); } catch (IOException e) { Logging.getErrorLog().reportException("Failed to close file channel", e); } } if (out != null) { try { out.close(); } catch (IOException e) { Logging.getErrorLog().reportException("Failed to close file channel", e); } } } } | 886,190 |
0 | public static URLConnection openRemoteDescriptionFile(String urlstr) throws MalformedURLException { URL url = new URL(urlstr); try { URLConnection conn = url.openConnection(); conn.connect(); return conn; } catch (Exception e) { Config conf = Config.loadConfig(); SimpleSocketAddress localServAddr = conf.getLocalProxyServerAddress(); Proxy proxy = new Proxy(Type.HTTP, new InetSocketAddress(localServAddr.host, localServAddr.port)); URLConnection conn; try { conn = url.openConnection(proxy); conn.connect(); return conn; } catch (IOException e1) { logger.error("Failed to retrive desc file:" + url, e1); } } return null; } | public boolean copyFile(File source, File dest) { try { FileReader in = new FileReader(source); FileWriter out = new FileWriter(dest); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); return true; } catch (Exception e) { return false; } } | 886,191 |
0 | public int fileUpload(File pFile, String uploadName, Hashtable pValue) throws Exception { int res = 0; MultipartEntity reqEntity = new MultipartEntity(); if (uploadName != null) { FileBody bin = new FileBody(pFile); reqEntity.addPart(uploadName, bin); } Enumeration<String> enm = pValue.keys(); String key; while (enm.hasMoreElements()) { key = enm.nextElement(); reqEntity.addPart(key, new StringBody("" + pValue.get(key))); } httpPost.setEntity(reqEntity); HttpResponse response = httpclient.execute(httpPost); HttpEntity resEntity = response.getEntity(); res = response.getStatusLine().getStatusCode(); close(); return res; } | public void run() { try { MessageDigest md = MessageDigest.getInstance("SHA-1"); ChannelMap cm = new ChannelMap(); for (int i = 0; i < picm.NumberOfChannels(); i++) { cm.Add(picm.GetName(i)); } String[] folder = picm.GetFolderList(); for (int i = 0; i < folder.length; i++) { cm.AddFolder(folder[i]); } sink.Request(cm, picm.GetRequestStart(), picm.GetRequestDuration(), picm.GetRequestReference()); cm = sink.Fetch(timeout); if (cm.GetIfFetchTimedOut()) { System.err.println("Signature Data Fetch Timed Out!"); picm.Clear(); } else { md.reset(); folder = cm.GetFolderList(); for (int i = 0; i < folder.length; i++) picm.AddFolder(folder[i]); int sigIdx = -1; for (int i = 0; i < cm.NumberOfChannels(); i++) { String chan = cm.GetName(i); if (chan.endsWith("/_signature")) { sigIdx = i; continue; } int idx = picm.GetIndex(chan); if (idx == -1) idx = picm.Add(chan); picm.PutTimeRef(cm, i); picm.PutDataRef(idx, cm, i); md.update(cm.GetData(i)); md.update((new Double(cm.GetTimeStart(i))).toString().getBytes()); } if (cm.NumberOfChannels() > 0) { byte[] amd = md.digest(signature.getBytes()); if (sigIdx >= 0) { if (MessageDigest.isEqual(amd, cm.GetDataAsByteArray(sigIdx)[0])) { System.err.println(pluginName + ": signature matched for: " + cm.GetName(0)); } else { System.err.println(pluginName + ": failed signature test, sending null response"); picm.Clear(); } } else { System.err.println(pluginName + ": _signature attached for: " + cm.GetName(0)); int idx = picm.Add("_signature"); picm.PutTime(0., 0.); picm.PutDataAsByteArray(idx, amd); } } } plugin.Flush(picm); } catch (Exception e) { e.printStackTrace(); } if (threadStack.size() < 4) threadStack.push(this); else sink.CloseRBNBConnection(); } | 886,192 |
1 | public String loadFileContent(final String _resourceURI) { final Lock readLock = this.fileLock.readLock(); final Lock writeLock = this.fileLock.writeLock(); boolean hasReadLock = false; boolean hasWriteLock = false; try { readLock.lock(); hasReadLock = true; if (!this.cachedResources.containsKey(_resourceURI)) { readLock.unlock(); hasReadLock = false; writeLock.lock(); hasWriteLock = true; if (!this.cachedResources.containsKey(_resourceURI)) { final InputStream resourceAsStream = this.getClass().getResourceAsStream(_resourceURI); final StringWriter writer = new StringWriter(); try { IOUtils.copy(resourceAsStream, writer); } catch (final IOException ex) { throw new IllegalStateException("Resource not read-able", ex); } final String loadedResource = writer.toString(); this.cachedResources.put(_resourceURI, loadedResource); } writeLock.unlock(); hasWriteLock = false; readLock.lock(); hasReadLock = true; } return this.cachedResources.get(_resourceURI); } finally { if (hasReadLock) { readLock.unlock(); } if (hasWriteLock) { writeLock.unlock(); } } } | public static final long copyFile(final File srcFile, final File dstFile, final long cpySize) throws IOException { if ((null == srcFile) || (null == dstFile)) return (-1L); final File dstFolder = dstFile.getParentFile(); if ((!dstFolder.exists()) && (!dstFolder.mkdirs())) throw new IOException("Failed to created destination folder(s)"); FileChannel srcChannel = null, dstChannel = null; try { srcChannel = new FileInputStream(srcFile).getChannel(); dstChannel = new FileOutputStream(dstFile).getChannel(); final long srcLen = srcFile.length(), copyLen = dstChannel.transferFrom(srcChannel, 0, (cpySize < 0L) ? srcLen : cpySize); if ((cpySize < 0L) && (copyLen != srcLen)) return (-2L); return copyLen; } finally { FileUtil.closeAll(srcChannel, dstChannel); } } | 886,193 |
0 | public static InputStream getRemoteIS(URL url, String post) throws ArcImsException { InputStream lector = null; try { HttpURLConnection conn = (HttpURLConnection) url.openConnection(); conn.setDoOutput(true); conn.setRequestMethod("POST"); conn.setRequestProperty("Content-type", "application/x-www-form-urlencoded"); conn.setRequestProperty("Content-length", "" + post.length()); OutputStreamWriter wr = new OutputStreamWriter(conn.getOutputStream()); wr.write(post); wr.flush(); logger.info("downloading '" + url.toString()); lector = conn.getInputStream(); } catch (ConnectException e) { logger.error("Timed out error", e); throw new ArcImsException("arcims_server_timeout"); } catch (ProtocolException e) { logger.error(e.getMessage(), e); throw new ArcImsException("arcims_server_error"); } catch (IOException e) { logger.error(e.getMessage(), e); throw new ArcImsException("arcims_server_error"); } return lector; } | public int extractDocumentsInternal(DocumentHolder holder, DocumentFactory docFactory) { FTPClient client = new FTPClient(); try { client.connect(site, port == 0 ? 21 : port); client.login(user, password); visitDirectory(client, "", path, holder, docFactory); client.disconnect(); } catch (SocketException e) { e.printStackTrace(); } catch (IOException e) { } return fileCount; } | 886,194 |
1 | private void getRandomGUID(boolean secure) { MessageDigest md5 = null; StringBuffer sbValueBeforeMD5 = new StringBuffer(); try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { System.out.println("Error: " + e); } try { long time = System.currentTimeMillis(); long rand = 0; if (secure) { rand = mySecureRand.nextLong(); } else { rand = myRand.nextLong(); } sbValueBeforeMD5.append(s_id); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(time)); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(rand)); valueBeforeMD5 = sbValueBeforeMD5.toString(); md5.update(valueBeforeMD5.getBytes()); byte[] array = md5.digest(); StringBuffer sb = new StringBuffer(); for (int j = 0; j < array.length; ++j) { int b = array[j] & 0xFF; if (b < 0x10) sb.append('0'); sb.append(Integer.toHexString(b)); } valueAfterMD5 = sb.toString(); } catch (Exception e) { System.out.println("Error:" + e); } } | private static String scramble(String text) { try { MessageDigest md = MessageDigest.getInstance("SHA-1"); md.update(text.getBytes("UTF-8")); StringBuffer sb = new StringBuffer(); for (byte b : md.digest()) sb.append(Integer.toString(b & 0xFF, 16)); return sb.toString(); } catch (UnsupportedEncodingException e) { return null; } catch (NoSuchAlgorithmException e) { return null; } } | 886,195 |
1 | public void setPassword(String plaintext) throws java.security.NoSuchAlgorithmException { StringBuffer encrypted = new StringBuffer(); java.security.MessageDigest digest = java.security.MessageDigest.getInstance("MD5"); digest.update(plaintext.getBytes()); byte[] digestArray = digest.digest(); for (int i = 0; i < digestArray.length; i++) { encrypted.append(byte2hex(digestArray[i])); } setEncryptedPassword(encrypted.toString()); } | public static String getMd5(String str) { try { final MessageDigest md = MessageDigest.getInstance("MD5"); md.update(str.getBytes()); final byte b[] = md.digest(); int i; final StringBuffer buf = new StringBuffer(""); for (int offset = 0; offset < b.length; offset++) { i = b[offset]; if (i < 0) { i += 256; } if (i < 16) { buf.append("0"); } buf.append(Integer.toHexString(i)); } return buf.toString(); } catch (final NoSuchAlgorithmException e) { e.printStackTrace(); } return ""; } | 886,196 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | private static void downloadFile(String downloadFileName) throws Exception { URL getFileUrl = new URL("http://www.tegsoft.com/Tobe/getFile" + "?tegsoftFileName=" + downloadFileName); URLConnection getFileUrlConnection = getFileUrl.openConnection(); InputStream is = getFileUrlConnection.getInputStream(); String tobeHome = UiUtil.getParameter("RealPath.Context"); OutputStream out = new FileOutputStream(tobeHome + "/setup/" + downloadFileName); IOUtils.copy(is, out); is.close(); out.close(); } | 886,197 |
1 | private static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | public static void exportDB(String input, String output) { try { Class.forName("org.sqlite.JDBC"); String fileName = input + File.separator + G.databaseName; File dataBase = new File(fileName); if (!dataBase.exists()) { JOptionPane.showMessageDialog(null, "No se encuentra el fichero DB", "Error", JOptionPane.ERROR_MESSAGE); } else { G.conn = DriverManager.getConnection("jdbc:sqlite:" + fileName); HashMap<Integer, String> languageIDs = new HashMap<Integer, String>(); HashMap<Integer, String> typeIDs = new HashMap<Integer, String>(); long tiempoInicio = System.currentTimeMillis(); Element dataBaseXML = new Element("database"); Element languages = new Element("languages"); Statement stat = G.conn.createStatement(); ResultSet rs = stat.executeQuery("select * from language order by id"); while (rs.next()) { int id = rs.getInt("id"); String name = rs.getString("name"); languageIDs.put(id, name); Element language = new Element("language"); language.setText(name); languages.addContent(language); } dataBaseXML.addContent(languages); rs = stat.executeQuery("select * from type order by id"); while (rs.next()) { int id = rs.getInt("id"); String name = rs.getString("name"); typeIDs.put(id, name); } rs = stat.executeQuery("select distinct name from main order by name"); while (rs.next()) { String name = rs.getString("name"); Element image = new Element("image"); image.setAttribute("id", name); Statement stat2 = G.conn.createStatement(); ResultSet rs2 = stat2.executeQuery("select distinct idL from main where name = \"" + name + "\" order by idL"); while (rs2.next()) { int idL = rs2.getInt("idL"); Element language = new Element("language"); language.setAttribute("id", languageIDs.get(idL)); Statement stat3 = G.conn.createStatement(); ResultSet rs3 = stat3.executeQuery("select * from main where name = \"" + name + "\" and idL = " + idL + " order by idT"); while (rs3.next()) { int idT = rs3.getInt("idT"); String word = rs3.getString("word"); Element wordE = new Element("word"); wordE.setAttribute("type", typeIDs.get(idT)); wordE.setText(word); language.addContent(wordE); String pathSrc = input + File.separator + name.substring(0, 1).toUpperCase() + File.separator + name; String pathDst = output + File.separator + name; try { FileChannel srcChannel = new FileInputStream(pathSrc).getChannel(); FileChannel dstChannel = new FileOutputStream(pathDst).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } catch (IOException exc) { System.out.println(exc.getMessage()); System.out.println(exc.toString()); } } rs3.close(); stat3.close(); image.addContent(language); } rs2.close(); stat2.close(); dataBaseXML.addContent(image); } rs.close(); stat.close(); XMLOutputter out = new XMLOutputter(Format.getPrettyFormat()); FileOutputStream f = new FileOutputStream(output + File.separator + G.imagesName); out.output(dataBaseXML, f); f.flush(); f.close(); long totalTiempo = System.currentTimeMillis() - tiempoInicio; System.out.println("El tiempo total es :" + totalTiempo / 1000 + " segundos"); } } catch (Exception e) { e.printStackTrace(); } } | 886,198 |
0 | void readData() { String[] nextLine; int line; double value; URL url = null; String FileToRead; try { for (int i = 0; i < names.length; i++) { FileToRead = "data/" + names[i] + ".csv"; url = new URL(ja.getCodeBase(), FileToRead); System.out.println(url.toString()); InputStream in = url.openStream(); CSVReader reader = new CSVReader(new InputStreamReader(in)); line = 0; while ((nextLine = reader.readNext()) != null) { allset.months[line] = Integer.parseInt(nextLine[0].substring(0, 2)); allset.years[line] = Integer.parseInt(nextLine[0].substring(6, 10)); value = Double.parseDouble(nextLine[1]); allset.values.getDataRef()[line][i] = value; line++; } } } catch (IOException e) { System.err.println("File Read Exception"); } } | public void writeOutput(String directory) throws IOException { File f = new File(directory); int i = 0; if (f.isDirectory()) { for (AppInventorScreen screen : screens.values()) { File screenFile = new File(getScreenFilePath(f.getAbsolutePath(), screen)); screenFile.getParentFile().mkdirs(); screenFile.createNewFile(); FileWriter out = new FileWriter(screenFile); String initial = files.get(i).toString(); Map<String, String> types = screen.getTypes(); String[] lines = initial.split("\n"); for (String key : types.keySet()) { if (!key.trim().equals(screen.getName().trim())) { String value = types.get(key); boolean varFound = false; boolean importFound = false; for (String line : lines) { if (line.matches("^\\s*(public|private)\\s+" + value + "\\s+" + key + "\\s*=.*;$")) varFound = true; if (line.matches("^\\s*(public|private)\\s+" + value + "\\s+" + key + "\\s*;$")) varFound = true; if (line.matches("^\\s*import\\s+.*" + value + "\\s*;$")) importFound = true; } if (!varFound) initial = initial.replaceFirst("(?s)(?<=\\{\n)", "\tprivate " + value + " " + key + ";\n"); if (!importFound) initial = initial.replaceFirst("(?=import)", "import com.google.devtools.simple.runtime.components.android." + value + ";\n"); } } out.write(initial); out.close(); i++; } File manifestFile = new File(getManifestFilePath(f.getAbsolutePath(), manifest)); manifestFile.getParentFile().mkdirs(); manifestFile.createNewFile(); FileWriter out = new FileWriter(manifestFile); out.write(manifest.toString()); out.close(); File projectFile = new File(getProjectFilePath(f.getAbsolutePath(), project)); projectFile.getParentFile().mkdirs(); projectFile.createNewFile(); out = new FileWriter(projectFile); out.write(project.toString()); out.close(); String[] copyResourceFilenames = { "proguard.cfg", "project.properties", "libSimpleAndroidRuntime.jar", "\\.classpath", "res/drawable/icon.png", "\\.settings/org.eclipse.jdt.core.prefs" }; for (String copyResourceFilename : copyResourceFilenames) { InputStream is = getClass().getResourceAsStream("/resources/" + copyResourceFilename.replace("\\.", "")); File outputFile = new File(f.getAbsoluteFile() + File.separator + copyResourceFilename.replace("\\.", ".")); outputFile.getParentFile().mkdirs(); OutputStream os = new FileOutputStream(outputFile); byte[] buf = new byte[1024]; int readBytes; if (is == null) System.out.println("/resources/" + copyResourceFilename.replace("\\.", "")); if (os == null) System.out.println(f.getAbsolutePath() + File.separator + copyResourceFilename.replace("\\.", ".")); while ((readBytes = is.read(buf)) > 0) { os.write(buf, 0, readBytes); } } for (String assetName : assets) { InputStream is = new FileInputStream(new File(assetsDir.getAbsolutePath() + File.separator + assetName)); File outputFile = new File(f.getAbsoluteFile() + File.separator + assetName); outputFile.getParentFile().mkdirs(); OutputStream os = new FileOutputStream(outputFile); byte[] buf = new byte[1024]; int readBytes; while ((readBytes = is.read(buf)) > 0) { os.write(buf, 0, readBytes); } } File assetsOutput = new File(getAssetsFilePath(f.getAbsolutePath())); new File(assetsDir.getAbsoluteFile() + File.separator + "assets").renameTo(assetsOutput); } } | 886,199 |
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